Copying experiment: ATI, fructans and predictive assessment of technological quality of Sicilian tetraploid conservation and modern wheat varieties

KIT Food Chemistry - ATI in Sicilian durum wheat

Job Status

Created: 2025-04-25 14:46:19
Modified: 2025-04-25 14:58:26
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Copying experiment: ATI, fructans and predictive assessment of technological quality of Sicilian tetraploid conservation and modern wheat varieties
File Path: /data/labkey/files/Panorama Public/2025/KIT Food Chemistry - ATI in Sicilian durum wheat/@files/Experiment_2103.log
Files: Experiment_2103.log
Completed Runs: 2021_ATIsamples_circe_2025-02-20_13-06-53.sky.zip
2022_ATIsamples_circe_2025-02-20_13-17-06.sky.zip
2023_ATIsamples_circe_2025-02-20_13-24-11.sky.zip

Log File


25 Apr 2025 14:46:19,387 INFO : Copying experiment "ATI, fructans and predictive assessment of technological quality of Sicilian tetraploid conservation and modern wheat varieties" from folder /KIT - Food Chemistry/ATI in Sicilian durum wheat to /Panorama Public/2025/KIT Food Chemistry - ATI in Sicilian durum wheat
25 Apr 2025 14:46:19,387 INFO : =======================================
25 Apr 2025 14:57:50,188 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
25 Apr 2025 14:57:50,188 INFO :
25 Apr 2025 14:57:50,188 INFO : Exporting experiment.
25 Apr 2025 14:58:01,682 INFO : Exporting files metadata.
25 Apr 2025 14:58:01,791 INFO :
25 Apr 2025 14:58:01,791 INFO : Experiment export completed successfully.
25 Apr 2025 14:58:01,791 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
25 Apr 2025 14:58:01,807 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
25 Apr 2025 14:58:01,807 INFO :
25 Apr 2025 14:58:01,807 INFO : Importing experiment.
25 Apr 2025 14:58:01,809 INFO : Loading folder properties (folder type, settings and active modules)
25 Apr 2025 14:58:01,840 INFO : Done importing folder properties (folder type, settings and active modules)
25 Apr 2025 14:58:01,841 INFO : Loading container specific module properties
25 Apr 2025 14:58:01,845 INFO : Done importing container specific module properties
25 Apr 2025 14:58:01,846 INFO : Loading queries
25 Apr 2025 14:58:01,847 INFO : 1 query imported
25 Apr 2025 14:58:01,847 INFO : Done importing queries
25 Apr 2025 14:58:01,848 INFO : Loading etl definitions
25 Apr 2025 14:58:01,849 INFO : Loading wikis
25 Apr 2025 14:58:01,849 INFO : 0 wikis imported
25 Apr 2025 14:58:01,849 INFO : Done importing wikis
25 Apr 2025 14:58:01,851 INFO : Starting Data Class Importer
25 Apr 2025 14:58:01,851 INFO : No types XAR file to process.
25 Apr 2025 14:58:01,851 INFO : Finished Data Class Importer
25 Apr 2025 14:58:01,852 INFO : Starting to copy files to @files
25 Apr 2025 14:58:01,852 INFO : Copied 0 files to @files
25 Apr 2025 14:58:01,852 INFO : Starting to copy files to @assayfiles
25 Apr 2025 14:58:01,852 INFO : Copied 0 files to @assayfiles
25 Apr 2025 14:58:01,852 INFO : Ensuring exp.data rows exist for imported files
25 Apr 2025 14:58:02,020 INFO : Starting Sample Type Importer
25 Apr 2025 14:58:02,021 INFO : No types XAR file to process.
25 Apr 2025 14:58:02,021 INFO : Finished Sample Type Importer
25 Apr 2025 14:58:02,021 INFO : Loading xar
25 Apr 2025 14:58:02,025 INFO : Done importing xar
25 Apr 2025 14:58:02,026 INFO : Loading pages and webpart properties
25 Apr 2025 14:58:02,069 INFO : Done importing 3 page(s) with 4 webpart(s)
25 Apr 2025 14:58:02,069 INFO : Loading File Browser config
25 Apr 2025 14:58:02,069 INFO : Done importing File Browser config
25 Apr 2025 14:58:02,069 INFO : Starting Sample Status Data import
25 Apr 2025 14:58:02,069 INFO : No sample types XAR file to process.
25 Apr 2025 14:58:02,070 INFO : Finished importing Sample Status Data
25 Apr 2025 14:58:02,073 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
25 Apr 2025 14:58:02,074 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
25 Apr 2025 14:58:02,074 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
25 Apr 2025 14:58:02,075 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
25 Apr 2025 14:58:02,075 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
25 Apr 2025 14:58:02,075 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
25 Apr 2025 14:58:02,076 INFO : Loading subfolders and container tabs
25 Apr 2025 14:58:02,107 INFO : New folder created with inherited permissions: /Panorama Public/2025/KIT Food Chemistry - ATI in Sicilian durum wheat/2021
25 Apr 2025 14:58:02,107 INFO : Loading folder archive for 2021
25 Apr 2025 14:58:02,108 INFO : Loading folder properties (folder type, settings and active modules)
25 Apr 2025 14:58:02,138 INFO : Done importing folder properties (folder type, settings and active modules)
25 Apr 2025 14:58:02,139 INFO : Loading container specific module properties
25 Apr 2025 14:58:02,143 INFO : Done importing container specific module properties
25 Apr 2025 14:58:02,144 INFO : Loading queries
25 Apr 2025 14:58:02,146 INFO : 1 query imported
25 Apr 2025 14:58:02,146 INFO : Done importing queries
25 Apr 2025 14:58:02,146 INFO : Loading etl definitions
25 Apr 2025 14:58:02,147 INFO : Loading wikis
25 Apr 2025 14:58:02,147 INFO : 0 wikis imported
25 Apr 2025 14:58:02,147 INFO : Done importing wikis
25 Apr 2025 14:58:02,149 INFO : Starting Data Class Importer
25 Apr 2025 14:58:02,149 INFO : No types XAR file to process.
25 Apr 2025 14:58:02,149 INFO : Finished Data Class Importer
25 Apr 2025 14:58:02,149 INFO : Starting to copy files to @files
25 Apr 2025 14:58:02,149 INFO : Copied 0 files to @files
25 Apr 2025 14:58:02,150 INFO : Starting to copy files to @assayfiles
25 Apr 2025 14:58:02,150 INFO : Copied 0 files to @assayfiles
25 Apr 2025 14:58:02,150 INFO : Ensuring exp.data rows exist for imported files
25 Apr 2025 14:58:02,152 INFO : Starting Sample Type Importer
25 Apr 2025 14:58:02,153 INFO : No types XAR file to process.
25 Apr 2025 14:58:02,153 INFO : Finished Sample Type Importer
25 Apr 2025 14:58:02,153 INFO : Loading xar
25 Apr 2025 14:58:02,642 INFO : Starting import from 2021_ATIsamples_circe_2025-02-20_13-06-53.sky.zip
25 Apr 2025 14:58:02,644 INFO : Starting to import Skyline document from 2021_ATIsamples_circe_2025-02-20_13-06-53.sky.zip
25 Apr 2025 14:58:02,644 INFO : Expanding 2021_ATIsamples_circe.skyd
25 Apr 2025 14:58:03,744 INFO : Expanding 2021_ATIsamples_circe.sky.view
25 Apr 2025 14:58:03,745 INFO : Expanding 2021_ATIsamples_circe.sky
25 Apr 2025 14:58:03,782 INFO : Reading Skyline file, 2021_ATIsamples_circe.sky, to determine if the TransitionChromInfos in the document should be stored...
25 Apr 2025 14:58:03,881 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
25 Apr 2025 14:58:03,882 WARN : The version of this Skyline document is 24.1. This is newer than the highest supported version 23.1
25 Apr 2025 14:58:03,884 INFO : 1% Done
25 Apr 2025 14:58:03,884 INFO : Copying SKYD to temp directory for import purposes
25 Apr 2025 14:58:04,141 INFO : Copying complete
25 Apr 2025 14:58:04,337 INFO : Inserting 0.28 sp|P01083|IAA2_WHEAT
25 Apr 2025 14:58:04,350 INFO : 6% Done
25 Apr 2025 14:58:04,581 INFO : 10% Done
25 Apr 2025 14:58:04,778 INFO : Inserting 0.19 sp|P01085|IAA1_WHEAT
25 Apr 2025 14:58:04,797 INFO : 15% Done
25 Apr 2025 14:58:04,993 INFO : 20% Done
25 Apr 2025 14:58:05,198 INFO : 25% Done
25 Apr 2025 14:58:05,386 INFO : Inserting 0.53 sp|P01084|IAA5_WHEAT
25 Apr 2025 14:58:05,396 INFO : 28% Done
25 Apr 2025 14:58:05,587 INFO : Inserting CM1 sp|P16850|IAAC1_WHEAT
25 Apr 2025 14:58:05,595 INFO : 32% Done
25 Apr 2025 14:58:05,748 INFO : Inserting CM2 sp|P16851|IAAC2_WHEAT
25 Apr 2025 14:58:05,755 INFO : 34% Done
25 Apr 2025 14:58:05,827 INFO : 39% Done
25 Apr 2025 14:58:06,005 INFO : Inserting CM3 sp|P17314|IAAC3_WHEAT
25 Apr 2025 14:58:06,016 INFO : 44% Done
25 Apr 2025 14:58:06,194 INFO : 48% Done
25 Apr 2025 14:58:06,364 INFO : Inserting CM16 sp|P16159|IAC16_WHEAT
25 Apr 2025 14:58:06,374 INFO : 53% Done
25 Apr 2025 14:58:06,526 INFO : 57% Done
25 Apr 2025 14:58:06,699 INFO : 62% Done
25 Apr 2025 14:58:06,865 INFO : Inserting CM17 tr|Q41540|Q41540_WHEAT
25 Apr 2025 14:58:06,875 INFO : 67% Done
25 Apr 2025 14:58:07,053 INFO : Inserting WASI sp|P16347|IAAS_WHEAT
25 Apr 2025 14:58:07,061 INFO : 71% Done
25 Apr 2025 14:58:07,212 INFO : 75% Done
25 Apr 2025 14:58:07,378 INFO : Inserting CMX1/3 sp|Q43723|IACX1_WHEAT
25 Apr 2025 14:58:07,387 INFO : 80% Done
25 Apr 2025 14:58:07,554 INFO : Inserting WCI sp|P83207|ICIW2_WHEAT
25 Apr 2025 14:58:07,563 INFO : 84% Done
25 Apr 2025 14:58:07,747 INFO : 89% Done
25 Apr 2025 14:58:07,927 INFO : Inserting sp|P-----|IBB3_WHEAT
25 Apr 2025 14:58:07,935 INFO : 93% Done
25 Apr 2025 14:58:08,113 INFO : 98% Done
25 Apr 2025 14:58:08,282 INFO : Done parsing Skyline document.
25 Apr 2025 14:58:08,282 INFO : Creating and populating temp tables for Proportion values
25 Apr 2025 14:58:08,291 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
25 Apr 2025 14:58:08,396 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
25 Apr 2025 14:58:08,436 INFO : Cleaning up temp tables
25 Apr 2025 14:58:08,711 INFO : Deleted temp copy of SKYD file
25 Apr 2025 14:58:08,711 INFO : Completed import of Skyline document from 2021_ATIsamples_circe_2025-02-20_13-06-53.sky.zip
25 Apr 2025 14:58:08,713 INFO : 100% Done
25 Apr 2025 14:58:08,955 INFO : Done importing xar
25 Apr 2025 14:58:08,956 INFO : Loading pages and webpart properties
25 Apr 2025 14:58:09,000 INFO : Done importing 3 page(s) with 3 webpart(s)
25 Apr 2025 14:58:09,000 INFO : Loading File Browser config
25 Apr 2025 14:58:09,000 INFO : Done importing File Browser config
25 Apr 2025 14:58:09,001 INFO : Starting Sample Status Data import
25 Apr 2025 14:58:09,001 INFO : No sample types XAR file to process.
25 Apr 2025 14:58:09,001 INFO : Finished importing Sample Status Data
25 Apr 2025 14:58:09,004 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
25 Apr 2025 14:58:09,006 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
25 Apr 2025 14:58:09,006 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
25 Apr 2025 14:58:09,006 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
25 Apr 2025 14:58:09,007 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
25 Apr 2025 14:58:09,007 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
25 Apr 2025 14:58:09,008 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
25 Apr 2025 14:58:09,010 INFO : Adding runs imported in subfolders.
25 Apr 2025 14:58:09,016 INFO : Moving files to folder /Panorama Public/2025/KIT Food Chemistry - ATI in Sicilian durum wheat/2021 and creating symlinks
25 Apr 2025 14:58:09,192 INFO : Aligning data files urls in folder: /Panorama Public/2025/KIT Food Chemistry - ATI in Sicilian durum wheat/2021
25 Apr 2025 14:58:09,197 INFO : Updating skydDataIds in folder: /Panorama Public/2025/KIT Food Chemistry - ATI in Sicilian durum wheat/2021
25 Apr 2025 14:58:09,198 INFO : Done importing folder archive for 2021
25 Apr 2025 14:58:09,234 INFO : New folder created with inherited permissions: /Panorama Public/2025/KIT Food Chemistry - ATI in Sicilian durum wheat/2022
25 Apr 2025 14:58:09,234 INFO : Loading folder archive for 2022
25 Apr 2025 14:58:09,235 INFO : Loading folder properties (folder type, settings and active modules)
25 Apr 2025 14:58:09,267 INFO : Done importing folder properties (folder type, settings and active modules)
25 Apr 2025 14:58:09,268 INFO : Loading container specific module properties
25 Apr 2025 14:58:09,273 INFO : Done importing container specific module properties
25 Apr 2025 14:58:09,274 INFO : Loading queries
25 Apr 2025 14:58:09,276 INFO : 1 query imported
25 Apr 2025 14:58:09,276 INFO : Done importing queries
25 Apr 2025 14:58:09,277 INFO : Loading etl definitions
25 Apr 2025 14:58:09,277 INFO : Loading wikis
25 Apr 2025 14:58:09,278 INFO : 0 wikis imported
25 Apr 2025 14:58:09,278 INFO : Done importing wikis
25 Apr 2025 14:58:09,280 INFO : Starting Data Class Importer
25 Apr 2025 14:58:09,280 INFO : No types XAR file to process.
25 Apr 2025 14:58:09,280 INFO : Finished Data Class Importer
25 Apr 2025 14:58:09,280 INFO : Starting to copy files to @files
25 Apr 2025 14:58:09,280 INFO : Copied 0 files to @files
25 Apr 2025 14:58:09,281 INFO : Starting to copy files to @assayfiles
25 Apr 2025 14:58:09,281 INFO : Copied 0 files to @assayfiles
25 Apr 2025 14:58:09,281 INFO : Ensuring exp.data rows exist for imported files
25 Apr 2025 14:58:09,284 INFO : Starting Sample Type Importer
25 Apr 2025 14:58:09,284 INFO : No types XAR file to process.
25 Apr 2025 14:58:09,284 INFO : Finished Sample Type Importer
25 Apr 2025 14:58:09,285 INFO : Loading xar
25 Apr 2025 14:58:09,779 INFO : Starting import from 2022_ATIsamples_circe_2025-02-20_13-17-06.sky.zip
25 Apr 2025 14:58:09,781 INFO : Starting to import Skyline document from 2022_ATIsamples_circe_2025-02-20_13-17-06.sky.zip
25 Apr 2025 14:58:09,781 INFO : Expanding 2022_ATIsamples_circe.skyd
25 Apr 2025 14:58:11,894 INFO : Expanding 2022_ATIsamples_circe.sky.view
25 Apr 2025 14:58:11,895 INFO : Expanding 2022_ATIsamples_circe.sky
25 Apr 2025 14:58:11,933 INFO : Reading Skyline file, 2022_ATIsamples_circe.sky, to determine if the TransitionChromInfos in the document should be stored...
25 Apr 2025 14:58:11,978 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
25 Apr 2025 14:58:11,978 WARN : The version of this Skyline document is 24.1. This is newer than the highest supported version 23.1
25 Apr 2025 14:58:11,980 INFO : 1% Done
25 Apr 2025 14:58:11,980 INFO : Copying SKYD to temp directory for import purposes
25 Apr 2025 14:58:12,475 INFO : Copying complete
25 Apr 2025 14:58:12,665 INFO : Inserting 0.28 sp|P01083|IAA2_WHEAT
25 Apr 2025 14:58:12,674 INFO : 6% Done
25 Apr 2025 14:58:12,856 INFO : 10% Done
25 Apr 2025 14:58:13,049 INFO : Inserting 0.19 sp|P01085|IAA1_WHEAT
25 Apr 2025 14:58:13,057 INFO : 15% Done
25 Apr 2025 14:58:13,226 INFO : 20% Done
25 Apr 2025 14:58:13,409 INFO : 24% Done
25 Apr 2025 14:58:13,602 INFO : 25% Done
25 Apr 2025 14:58:13,602 INFO : Inserting 0.53 sp|P01084|IAA5_WHEAT
25 Apr 2025 14:58:13,610 INFO : 28% Done
25 Apr 2025 14:58:13,802 INFO : Inserting CM1 sp|P16850|IAAC1_WHEAT
25 Apr 2025 14:58:13,809 INFO : 32% Done
25 Apr 2025 14:58:13,958 INFO : Inserting CM2 sp|P16851|IAAC2_WHEAT
25 Apr 2025 14:58:13,963 INFO : 34% Done
25 Apr 2025 14:58:14,026 INFO : 39% Done
25 Apr 2025 14:58:14,188 INFO : Inserting CM3 sp|P17314|IAAC3_WHEAT
25 Apr 2025 14:58:14,196 INFO : 44% Done
25 Apr 2025 14:58:14,368 INFO : 48% Done
25 Apr 2025 14:58:14,530 INFO : Inserting CM16 sp|P16159|IAC16_WHEAT
25 Apr 2025 14:58:14,538 INFO : 53% Done
25 Apr 2025 14:58:14,687 INFO : 57% Done
25 Apr 2025 14:58:14,856 INFO : 62% Done
25 Apr 2025 14:58:15,018 INFO : Inserting CM17 tr|Q41540|Q41540_WHEAT
25 Apr 2025 14:58:15,026 INFO : 67% Done
25 Apr 2025 14:58:15,201 INFO : Inserting WASI sp|P16347|IAAS_WHEAT
25 Apr 2025 14:58:15,209 INFO : 71% Done
25 Apr 2025 14:58:15,357 INFO : 75% Done
25 Apr 2025 14:58:15,520 INFO : Inserting CMX1/3 sp|Q43723|IACX1_WHEAT
25 Apr 2025 14:58:15,529 INFO : 79% Done
25 Apr 2025 14:58:15,691 INFO : Inserting WCI sp|P83207|ICIW2_WHEAT
25 Apr 2025 14:58:15,699 INFO : 84% Done
25 Apr 2025 14:58:15,877 INFO : 89% Done
25 Apr 2025 14:58:16,051 INFO : Inserting sp|P-----|IBB3_WHEAT
25 Apr 2025 14:58:16,059 INFO : 93% Done
25 Apr 2025 14:58:16,230 INFO : 98% Done
25 Apr 2025 14:58:16,392 INFO : Done parsing Skyline document.
25 Apr 2025 14:58:16,393 INFO : Creating and populating temp tables for Proportion values
25 Apr 2025 14:58:16,402 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
25 Apr 2025 14:58:16,510 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
25 Apr 2025 14:58:16,550 INFO : Cleaning up temp tables
25 Apr 2025 14:58:16,813 INFO : Deleted temp copy of SKYD file
25 Apr 2025 14:58:16,813 INFO : Completed import of Skyline document from 2022_ATIsamples_circe_2025-02-20_13-17-06.sky.zip
25 Apr 2025 14:58:16,815 INFO : 100% Done
25 Apr 2025 14:58:17,009 INFO : Done importing xar
25 Apr 2025 14:58:17,009 INFO : Loading pages and webpart properties
25 Apr 2025 14:58:17,052 INFO : Done importing 3 page(s) with 3 webpart(s)
25 Apr 2025 14:58:17,052 INFO : Loading File Browser config
25 Apr 2025 14:58:17,052 INFO : Done importing File Browser config
25 Apr 2025 14:58:17,053 INFO : Starting Sample Status Data import
25 Apr 2025 14:58:17,053 INFO : No sample types XAR file to process.
25 Apr 2025 14:58:17,053 INFO : Finished importing Sample Status Data
25 Apr 2025 14:58:17,056 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
25 Apr 2025 14:58:17,058 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
25 Apr 2025 14:58:17,058 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
25 Apr 2025 14:58:17,058 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
25 Apr 2025 14:58:17,059 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
25 Apr 2025 14:58:17,059 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
25 Apr 2025 14:58:17,059 INFO : Moving files to folder /Panorama Public/2025/KIT Food Chemistry - ATI in Sicilian durum wheat/2022 and creating symlinks
25 Apr 2025 14:58:17,244 INFO : Aligning data files urls in folder: /Panorama Public/2025/KIT Food Chemistry - ATI in Sicilian durum wheat/2022
25 Apr 2025 14:58:17,249 INFO : Updating skydDataIds in folder: /Panorama Public/2025/KIT Food Chemistry - ATI in Sicilian durum wheat/2022
25 Apr 2025 14:58:17,250 INFO : Done importing folder archive for 2022
25 Apr 2025 14:58:17,281 INFO : New folder created with inherited permissions: /Panorama Public/2025/KIT Food Chemistry - ATI in Sicilian durum wheat/2023
25 Apr 2025 14:58:17,281 INFO : Loading folder archive for 2023
25 Apr 2025 14:58:17,282 INFO : Loading folder properties (folder type, settings and active modules)
25 Apr 2025 14:58:17,311 INFO : Done importing folder properties (folder type, settings and active modules)
25 Apr 2025 14:58:17,312 INFO : Loading container specific module properties
25 Apr 2025 14:58:17,316 INFO : Done importing container specific module properties
25 Apr 2025 14:58:17,317 INFO : Loading queries
25 Apr 2025 14:58:17,319 INFO : 1 query imported
25 Apr 2025 14:58:17,319 INFO : Done importing queries
25 Apr 2025 14:58:17,320 INFO : Loading etl definitions
25 Apr 2025 14:58:17,320 INFO : Loading wikis
25 Apr 2025 14:58:17,321 INFO : 0 wikis imported
25 Apr 2025 14:58:17,321 INFO : Done importing wikis
25 Apr 2025 14:58:17,322 INFO : Starting Data Class Importer
25 Apr 2025 14:58:17,323 INFO : No types XAR file to process.
25 Apr 2025 14:58:17,323 INFO : Finished Data Class Importer
25 Apr 2025 14:58:17,323 INFO : Starting to copy files to @files
25 Apr 2025 14:58:17,323 INFO : Copied 0 files to @files
25 Apr 2025 14:58:17,324 INFO : Starting to copy files to @assayfiles
25 Apr 2025 14:58:17,324 INFO : Copied 0 files to @assayfiles
25 Apr 2025 14:58:17,324 INFO : Ensuring exp.data rows exist for imported files
25 Apr 2025 14:58:17,327 INFO : Starting Sample Type Importer
25 Apr 2025 14:58:17,327 INFO : No types XAR file to process.
25 Apr 2025 14:58:17,327 INFO : Finished Sample Type Importer
25 Apr 2025 14:58:17,327 INFO : Loading xar
25 Apr 2025 14:58:17,809 INFO : Starting import from 2023_ATIsamples_circe_2025-02-20_13-24-11.sky.zip
25 Apr 2025 14:58:17,811 INFO : Starting to import Skyline document from 2023_ATIsamples_circe_2025-02-20_13-24-11.sky.zip
25 Apr 2025 14:58:17,811 INFO : Expanding 2023_ATIsamples_circe.skyd
25 Apr 2025 14:58:18,067 INFO : Expanding 2023_ATIsamples_circe.sky.view
25 Apr 2025 14:58:18,068 INFO : Expanding 2023_ATIsamples_circe.sky
25 Apr 2025 14:58:18,105 INFO : Reading Skyline file, 2023_ATIsamples_circe.sky, to determine if the TransitionChromInfos in the document should be stored...
25 Apr 2025 14:58:18,141 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
25 Apr 2025 14:58:18,141 WARN : The version of this Skyline document is 24.1. This is newer than the highest supported version 23.1
25 Apr 2025 14:58:18,143 INFO : 1% Done
25 Apr 2025 14:58:18,143 INFO : Copying SKYD to temp directory for import purposes
25 Apr 2025 14:58:18,214 INFO : Copying complete
25 Apr 2025 14:58:18,401 INFO : Inserting 0.28 sp|P01083|IAA2_WHEAT
25 Apr 2025 14:58:18,410 INFO : 6% Done
25 Apr 2025 14:58:18,588 INFO : 10% Done
25 Apr 2025 14:58:18,759 INFO : Inserting 0.19 sp|P01085|IAA1_WHEAT
25 Apr 2025 14:58:18,767 INFO : 15% Done
25 Apr 2025 14:58:18,948 INFO : 20% Done
25 Apr 2025 14:58:19,108 INFO : Inserting 0.19 sp|P01085|IAA1_WHEAT, NEU
25 Apr 2025 14:58:19,117 INFO : 24% Done
25 Apr 2025 14:58:19,279 INFO : 25% Done
25 Apr 2025 14:58:19,279 INFO : Inserting 0.53 sp|P01084|IAA5_WHEAT
25 Apr 2025 14:58:19,287 INFO : 28% Done
25 Apr 2025 14:58:19,454 INFO : Inserting CM1 sp|P16850|IAAC1_WHEAT
25 Apr 2025 14:58:19,462 INFO : 32% Done
25 Apr 2025 14:58:19,592 INFO : Inserting CM2 sp|P16851|IAAC2_WHEAT
25 Apr 2025 14:58:19,598 INFO : 34% Done
25 Apr 2025 14:58:19,658 INFO : 39% Done
25 Apr 2025 14:58:19,819 INFO : Inserting CM3 sp|P17314|IAAC3_WHEAT
25 Apr 2025 14:58:19,827 INFO : 44% Done
25 Apr 2025 14:58:19,995 INFO : 48% Done
25 Apr 2025 14:58:20,156 INFO : Inserting CM16 sp|P16159|IAC16_WHEAT
25 Apr 2025 14:58:20,164 INFO : 53% Done
25 Apr 2025 14:58:20,312 INFO : 57% Done
25 Apr 2025 14:58:20,480 INFO : 62% Done
25 Apr 2025 14:58:20,641 INFO : Inserting CM17 tr|Q41540|Q41540_WHEAT
25 Apr 2025 14:58:20,649 INFO : 67% Done
25 Apr 2025 14:58:20,823 INFO : Inserting WASI sp|P16347|IAAS_WHEAT
25 Apr 2025 14:58:20,830 INFO : 71% Done
25 Apr 2025 14:58:20,978 INFO : 75% Done
25 Apr 2025 14:58:21,138 INFO : Inserting CMX1/3 sp|Q43723|IACX1_WHEAT
25 Apr 2025 14:58:21,147 INFO : 79% Done
25 Apr 2025 14:58:21,312 INFO : 80% Done
25 Apr 2025 14:58:21,312 INFO : Inserting WCI sp|P83207|ICIW2_WHEAT
25 Apr 2025 14:58:21,320 INFO : 84% Done
25 Apr 2025 14:58:21,496 INFO : 89% Done
25 Apr 2025 14:58:21,664 INFO : Inserting sp|P-----|IBB3_WHEAT
25 Apr 2025 14:58:21,672 INFO : 93% Done
25 Apr 2025 14:58:21,839 INFO : 98% Done
25 Apr 2025 14:58:22,003 INFO : Done parsing Skyline document.
25 Apr 2025 14:58:22,003 INFO : Creating and populating temp tables for Proportion values
25 Apr 2025 14:58:22,013 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
25 Apr 2025 14:58:22,120 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
25 Apr 2025 14:58:22,159 INFO : Cleaning up temp tables
25 Apr 2025 14:58:22,431 INFO : Deleted temp copy of SKYD file
25 Apr 2025 14:58:22,431 INFO : Completed import of Skyline document from 2023_ATIsamples_circe_2025-02-20_13-24-11.sky.zip
25 Apr 2025 14:58:22,433 INFO : 100% Done
25 Apr 2025 14:58:22,618 INFO : Done importing xar
25 Apr 2025 14:58:22,619 INFO : Loading pages and webpart properties
25 Apr 2025 14:58:22,662 INFO : Done importing 3 page(s) with 3 webpart(s)
25 Apr 2025 14:58:22,662 INFO : Loading File Browser config
25 Apr 2025 14:58:22,662 INFO : Done importing File Browser config
25 Apr 2025 14:58:22,662 INFO : Starting Sample Status Data import
25 Apr 2025 14:58:22,663 INFO : No sample types XAR file to process.
25 Apr 2025 14:58:22,663 INFO : Finished importing Sample Status Data
25 Apr 2025 14:58:22,666 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
25 Apr 2025 14:58:22,667 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
25 Apr 2025 14:58:22,667 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
25 Apr 2025 14:58:22,668 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
25 Apr 2025 14:58:22,668 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
25 Apr 2025 14:58:22,668 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
25 Apr 2025 14:58:22,669 INFO : Moving files to folder /Panorama Public/2025/KIT Food Chemistry - ATI in Sicilian durum wheat/2023 and creating symlinks
25 Apr 2025 14:58:22,844 INFO : Aligning data files urls in folder: /Panorama Public/2025/KIT Food Chemistry - ATI in Sicilian durum wheat/2023
25 Apr 2025 14:58:22,848 INFO : Updating skydDataIds in folder: /Panorama Public/2025/KIT Food Chemistry - ATI in Sicilian durum wheat/2023
25 Apr 2025 14:58:22,850 INFO : Done importing folder archive for 2023
25 Apr 2025 14:58:22,850 INFO : Done importing subfolders and container tabs
25 Apr 2025 14:58:22,850 INFO : Moving files to folder /Panorama Public/2025/KIT Food Chemistry - ATI in Sicilian durum wheat and creating symlinks
25 Apr 2025 14:58:22,852 INFO : Aligning data files urls in folder: /Panorama Public/2025/KIT Food Chemistry - ATI in Sicilian durum wheat
25 Apr 2025 14:58:22,853 INFO : Updating skydDataIds in folder: /Panorama Public/2025/KIT Food Chemistry - ATI in Sicilian durum wheat
25 Apr 2025 14:58:22,853 INFO : Importing files metadata.
25 Apr 2025 14:58:22,856 INFO :
25 Apr 2025 14:58:22,856 INFO : Experiment import completed successfully.
25 Apr 2025 14:58:22,856 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
25 Apr 2025 14:58:22,872 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
25 Apr 2025 14:58:22,872 INFO :
25 Apr 2025 14:58:22,872 INFO : Checking for library folders.
25 Apr 2025 14:58:22,874 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
25 Apr 2025 14:58:22,886 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
25 Apr 2025 14:58:22,886 INFO :
25 Apr 2025 14:58:22,886 INFO : Finishing up experiment copy.
25 Apr 2025 14:58:22,887 INFO : Updating TargetedMS experiment entry in target folder /Panorama Public/2025/KIT Food Chemistry - ATI in Sicilian durum wheat
25 Apr 2025 14:58:22,888 INFO : Setting version on new experiment to 1
25 Apr 2025 14:58:22,889 INFO : Updating permanent link to point to the new copy of the data.
25 Apr 2025 14:58:22,904 INFO : Removing copy permissions given to Panorama Public
25 Apr 2025 14:58:22,909 INFO : Adding read permissions to all users that are folder admins in the source folder.
25 Apr 2025 14:58:22,909 INFO : Assigning ReaderRole to s.geisslitz.leibniz-lsb@tum.de
25 Apr 2025 14:58:22,909 INFO : Assigning ReaderRole to sabrina.geisslitz@kit.edu
25 Apr 2025 14:58:22,909 INFO : Assigning ReaderRole to katharina.scherf@kit.edu
25 Apr 2025 14:58:22,909 INFO : Assigning ReaderRole to marco.bonarrigo@unitus.it
25 Apr 2025 14:58:22,909 INFO : Assigning ReaderRole to k.scherf.leibniz-lsb@tum.de
25 Apr 2025 14:58:22,909 INFO : Assigning PanoramaPublicSubmitterRole to marco.bonarrigo@unitus.it
25 Apr 2025 14:58:22,909 INFO : Assigning PanoramaPublicSubmitterRole to k.scherf.leibniz-lsb@tum.de
25 Apr 2025 14:58:22,913 INFO : Adding user marco.bonarrigo@unitus.it to group Panorama Public Submitters
25 Apr 2025 14:58:22,916 INFO : User k.scherf.leibniz-lsb@tum.de is already a member of group Panorama Public Submitters
25 Apr 2025 14:58:22,916 INFO : Updating the 'Raw Data' tab configuration
25 Apr 2025 14:58:22,917 INFO : Making folder public.
25 Apr 2025 14:58:22,918 INFO : Hiding the Data Pipeline tab.
25 Apr 2025 14:58:22,928 INFO : Updating Submission. Setting copiedExperimentId to 2060
25 Apr 2025 14:58:25,320 INFO : Assigning a ProteomeXchange ID.
25 Apr 2025 14:58:25,576 INFO : Assigned ProteomeXchange ID: PXD063353
25 Apr 2025 14:58:25,576 INFO : Assigning a DOI.
25 Apr 2025 14:58:26,394 INFO : Assigned DOI: 10.6069/9j6n-e741
25 Apr 2025 14:58:26,533 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'