Copying experiment: Development and Application of a Targeted Phosphoproteomics Method for mTOR Pathway Analysis in Zebrafish PAC2 Cells

EAWAG Environmental Toxicology - mTOR_zf_PAC2_growth_curve

Job Status

Created: 2025-01-20 10:13:43
Modified: 2025-01-20 10:25:39
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Copying experiment: Development and Application of a Targeted Phosphoproteomics Method for mTOR Pathway Analysis in Zebrafish PAC2 Cells
File Path: /data/labkey/files/Panorama Public/2025/EAWAG Environmental Toxicology - mTOR_zf_PAC2_growth_curve/@files/Experiment_2018.log
Files: Experiment_2018.log
Completed Runs: NHU060_SIS_Reproducibility_paper_2024-09-08_16-27-04.sky.zip
P1_NHU024_025_033_growth_curve_2024-09-08_15-43-41.sky.zip
NHU061_SIS_linearity_SI_paper_2024-09-08_16-06-18.sky.zip
NHU049_058_Fe_vs_TiO2_2025-01-19_17-46-22.sky.zip
NHU054_matrix_2025-01-19_18-06-20.sky.zip

Log File


20 Jan 2025 10:13:43,623 INFO : Copying experiment "Development and Application of a Targeted Phosphoproteomics Method for mTOR Pathway Analysis in Zebrafish PAC2 Cells" from folder /EAWAG - Environmental Toxicology/mTOR_zf_PAC2_growth_curve to /Panorama Public/2025/EAWAG Environmental Toxicology - mTOR_zf_PAC2_growth_curve
20 Jan 2025 10:13:43,623 INFO : =======================================
20 Jan 2025 10:16:13,720 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
20 Jan 2025 10:16:13,720 INFO :
20 Jan 2025 10:16:13,720 INFO : Exporting experiment.
20 Jan 2025 10:17:16,045 INFO : Exporting files metadata.
20 Jan 2025 10:17:16,115 INFO :
20 Jan 2025 10:17:16,115 INFO : Experiment export completed successfully.
20 Jan 2025 10:17:16,115 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
20 Jan 2025 10:17:16,132 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
20 Jan 2025 10:17:16,132 INFO :
20 Jan 2025 10:17:16,132 INFO : Importing experiment.
20 Jan 2025 10:17:16,134 INFO : Loading folder properties (folder type, settings and active modules)
20 Jan 2025 10:17:16,166 INFO : Done importing folder properties (folder type, settings and active modules)
20 Jan 2025 10:17:16,167 INFO : Loading container specific module properties
20 Jan 2025 10:17:16,172 INFO : Done importing container specific module properties
20 Jan 2025 10:17:16,173 INFO : Loading queries
20 Jan 2025 10:17:16,175 INFO : 1 query imported
20 Jan 2025 10:17:16,175 INFO : Done importing queries
20 Jan 2025 10:17:16,176 INFO : Loading grid views
20 Jan 2025 10:17:16,179 INFO : 1 custom view imported
20 Jan 2025 10:17:16,179 INFO : Done importing grid views
20 Jan 2025 10:17:16,180 INFO : Loading etl definitions
20 Jan 2025 10:17:16,181 INFO : Loading wikis
20 Jan 2025 10:17:16,248 INFO : 8 wikis imported
20 Jan 2025 10:17:16,248 INFO : Done importing wikis
20 Jan 2025 10:17:16,249 INFO : Starting Data Class Importer
20 Jan 2025 10:17:16,250 INFO : No types XAR file to process.
20 Jan 2025 10:17:16,250 INFO : Finished Data Class Importer
20 Jan 2025 10:17:16,250 INFO : Starting to copy files to @files
20 Jan 2025 10:17:16,250 INFO : Copied 0 files to @files
20 Jan 2025 10:17:16,250 INFO : Starting to copy files to @assayfiles
20 Jan 2025 10:17:16,250 INFO : Copied 0 files to @assayfiles
20 Jan 2025 10:17:16,250 INFO : Ensuring exp.data rows exist for imported files
20 Jan 2025 10:17:16,362 INFO : Starting Sample Type Importer
20 Jan 2025 10:17:16,362 INFO : No types XAR file to process.
20 Jan 2025 10:17:16,362 INFO : Finished Sample Type Importer
20 Jan 2025 10:17:16,363 INFO : Loading xar
20 Jan 2025 10:17:30,301 INFO : Starting import from P1_NHU024_025_033_growth_curve_2024-09-08_15-43-41.sky.zip
20 Jan 2025 10:17:30,304 INFO : Starting to import Skyline document from P1_NHU024_025_033_growth_curve_2024-09-08_15-43-41.sky.zip
20 Jan 2025 10:17:30,312 INFO : Expanding Zebrafish_whole_proteome.protdb
20 Jan 2025 10:17:33,550 INFO : Expanding DIA_library_development_stage-assay.blib
20 Jan 2025 10:17:33,768 INFO : Expanding P1_NHU024_025_033_growth_curve.skyd
20 Jan 2025 10:17:34,152 INFO : Expanding P1_NHU024_025_033_growth_curve.sky.view
20 Jan 2025 10:17:34,153 INFO : Expanding P1_NHU024_025_033_growth_curve.sky
20 Jan 2025 10:17:34,174 INFO : Expanding P1_NHU024_025_033_growth_curve.skyl
20 Jan 2025 10:17:34,232 INFO : Reading Skyline file, P1_NHU024_025_033_growth_curve.sky, to determine if the TransitionChromInfos in the document should be stored...
20 Jan 2025 10:17:34,253 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
20 Jan 2025 10:17:34,255 INFO : 1% Done
20 Jan 2025 10:17:34,549 INFO : Inserting actb1_housekeeping protein
20 Jan 2025 10:17:34,556 INFO : 2% Done
20 Jan 2025 10:17:34,583 INFO : 3% Done
20 Jan 2025 10:17:34,605 INFO : Inserting Akt1
20 Jan 2025 10:17:34,608 INFO : 4% Done
20 Jan 2025 10:17:34,624 INFO : 5% Done
20 Jan 2025 10:17:34,648 INFO : 6% Done
20 Jan 2025 10:17:34,671 INFO : 7% Done
20 Jan 2025 10:17:34,697 INFO : Inserting AKT2_beta
20 Jan 2025 10:17:34,702 INFO : 9% Done
20 Jan 2025 10:17:34,725 INFO : 10% Done
20 Jan 2025 10:17:34,751 INFO : Inserting Akt3_gamma_incl. QC1_DEVA
20 Jan 2025 10:17:34,756 INFO : 12% Done
20 Jan 2025 10:17:34,795 INFO : Inserting akt1s1
20 Jan 2025 10:17:34,798 INFO : 13% Done
20 Jan 2025 10:17:34,813 INFO : 14% Done
20 Jan 2025 10:17:34,840 INFO : 15% Done
20 Jan 2025 10:17:34,866 INFO : 16% Done
20 Jan 2025 10:17:34,878 INFO : Inserting eif4ebp1_incl. QC2_FLLDC
20 Jan 2025 10:17:34,883 INFO : 17% Done
20 Jan 2025 10:17:34,907 INFO : 18% Done
20 Jan 2025 10:17:34,936 INFO : 19% Done
20 Jan 2025 10:17:34,948 INFO : Inserting ERK2
20 Jan 2025 10:17:34,952 INFO : 20% Done
20 Jan 2025 10:17:34,977 INFO : Inserting fkbp8
20 Jan 2025 10:17:34,981 INFO : 21% Done
20 Jan 2025 10:17:34,994 INFO : 22% Done
20 Jan 2025 10:17:35,020 INFO : Inserting hif1ab
20 Jan 2025 10:17:35,023 INFO : 23% Done
20 Jan 2025 10:17:35,037 INFO : 24% Done
20 Jan 2025 10:17:35,061 INFO : Inserting lamtor1_incl. QC3_IAAY
20 Jan 2025 10:17:35,066 INFO : 25% Done
20 Jan 2025 10:17:35,084 INFO : 26% Done
20 Jan 2025 10:17:35,084 INFO : Inserting lamtor2
20 Jan 2025 10:17:35,094 INFO : Inserting GAPDH_incl. QC4_VGIN
20 Jan 2025 10:17:35,114 INFO : Inserting lamtor5
20 Jan 2025 10:17:35,118 INFO : 27% Done
20 Jan 2025 10:17:35,132 INFO : 28% Done
20 Jan 2025 10:17:35,145 INFO : 29% Done
20 Jan 2025 10:17:35,157 INFO : Inserting lpin1a
20 Jan 2025 10:17:35,171 INFO : 30% Done
20 Jan 2025 10:17:35,193 INFO : Inserting LPIN1b
20 Jan 2025 10:17:35,209 INFO : 31% Done
20 Jan 2025 10:17:35,221 INFO : 32% Done
20 Jan 2025 10:17:35,235 INFO : 33% Done
20 Jan 2025 10:17:35,250 INFO : 34% Done
20 Jan 2025 10:17:35,264 INFO : Inserting mlst8
20 Jan 2025 10:17:35,295 INFO : 35% Done
20 Jan 2025 10:17:35,307 INFO : Inserting mTOR
20 Jan 2025 10:17:35,312 INFO : 37% Done
20 Jan 2025 10:17:35,350 INFO : 38% Done
20 Jan 2025 10:17:35,378 INFO : 39% Done
20 Jan 2025 10:17:35,389 INFO : Inserting pparg
20 Jan 2025 10:17:35,393 INFO : 40% Done
20 Jan 2025 10:17:35,405 INFO : Inserting prkaa1
20 Jan 2025 10:17:35,408 INFO : 41% Done
20 Jan 2025 10:17:35,436 INFO : 42% Done
20 Jan 2025 10:17:35,463 INFO : 43% Done
20 Jan 2025 10:17:35,477 INFO : 44% Done
20 Jan 2025 10:17:35,507 INFO : 45% Done
20 Jan 2025 10:17:35,522 INFO : 46% Done
20 Jan 2025 10:17:35,549 INFO : 47% Done
20 Jan 2025 10:17:35,561 INFO : Inserting prkaa2
20 Jan 2025 10:17:35,575 INFO : Inserting prkag1
20 Jan 2025 10:17:35,578 INFO : 48% Done
20 Jan 2025 10:17:35,593 INFO : 49% Done
20 Jan 2025 10:17:35,607 INFO : 50% Done
20 Jan 2025 10:17:35,645 INFO : Inserting RPS18_housekeeping protein
20 Jan 2025 10:17:35,649 INFO : 51% Done
20 Jan 2025 10:17:35,661 INFO : Inserting rheb
20 Jan 2025 10:17:35,664 INFO : 52% Done
20 Jan 2025 10:17:35,678 INFO : 53% Done
20 Jan 2025 10:17:35,693 INFO : 54% Done
20 Jan 2025 10:17:35,705 INFO : Inserting Rictorb_isoform_X1
20 Jan 2025 10:17:35,735 INFO : 55% Done
20 Jan 2025 10:17:35,748 INFO : Inserting rps6
20 Jan 2025 10:17:35,752 INFO : 57% Done
20 Jan 2025 10:17:35,789 INFO : 58% Done
20 Jan 2025 10:17:35,809 INFO : Inserting rps6kb1a
20 Jan 2025 10:17:35,825 INFO : 59% Done
20 Jan 2025 10:17:35,839 INFO : 60% Done
20 Jan 2025 10:17:35,853 INFO : 61% Done
20 Jan 2025 10:17:35,878 INFO : 62% Done
20 Jan 2025 10:17:35,904 INFO : Inserting rptor
20 Jan 2025 10:17:35,908 INFO : 64% Done
20 Jan 2025 10:17:35,942 INFO : 65% Done
20 Jan 2025 10:17:35,957 INFO : 66% Done
20 Jan 2025 10:17:35,994 INFO : Inserting stk11
20 Jan 2025 10:17:35,998 INFO : 67% Done
20 Jan 2025 10:17:36,012 INFO : 68% Done
20 Jan 2025 10:17:36,035 INFO : Inserting tsc1b
20 Jan 2025 10:17:36,039 INFO : 69% Done
20 Jan 2025 10:17:36,053 INFO : 70% Done
20 Jan 2025 10:17:36,070 INFO : 71% Done
20 Jan 2025 10:17:36,102 INFO : Inserting tsc2
20 Jan 2025 10:17:36,106 INFO : 72% Done
20 Jan 2025 10:17:36,133 INFO : 73% Done
20 Jan 2025 10:17:36,146 INFO : 74% Done
20 Jan 2025 10:17:36,185 INFO : 75% Done
20 Jan 2025 10:17:36,199 INFO : 76% Done
20 Jan 2025 10:17:36,212 INFO : 77% Done
20 Jan 2025 10:17:36,235 INFO : 78% Done
20 Jan 2025 10:17:36,260 INFO : Inserting ulk1b
20 Jan 2025 10:17:36,263 INFO : 79% Done
20 Jan 2025 10:17:36,289 INFO : 80% Done
20 Jan 2025 10:17:36,300 INFO : Done parsing Skyline document.
20 Jan 2025 10:17:36,351 INFO : No group comparisons found.
20 Jan 2025 10:17:36,351 INFO : Calculating calibration curves
20 Jan 2025 10:17:36,370 INFO : 81% Done
20 Jan 2025 10:17:36,423 INFO : 82% Done
20 Jan 2025 10:17:36,469 INFO : 83% Done
20 Jan 2025 10:17:36,503 INFO : 84% Done
20 Jan 2025 10:17:36,523 INFO : 85% Done
20 Jan 2025 10:17:36,545 INFO : 86% Done
20 Jan 2025 10:17:36,556 INFO : 87% Done
20 Jan 2025 10:17:36,573 INFO : 88% Done
20 Jan 2025 10:17:36,618 INFO : 89% Done
20 Jan 2025 10:17:36,665 INFO : 90% Done
20 Jan 2025 10:17:36,734 INFO : 91% Done
20 Jan 2025 10:17:36,742 INFO : 92% Done
20 Jan 2025 10:17:36,775 INFO : 93% Done
20 Jan 2025 10:17:36,812 INFO : 94% Done
20 Jan 2025 10:17:36,838 INFO : 95% Done
20 Jan 2025 10:17:36,912 INFO : 96% Done
20 Jan 2025 10:17:36,949 INFO : 97% Done
20 Jan 2025 10:17:37,030 INFO : 98% Done
20 Jan 2025 10:17:37,042 INFO : Done calculating calibration curves.
20 Jan 2025 10:19:20,060 INFO : Creating and populating temp tables for Proportion values
20 Jan 2025 10:19:20,070 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
20 Jan 2025 10:19:20,223 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
20 Jan 2025 10:19:20,287 INFO : Cleaning up temp tables
20 Jan 2025 10:19:20,523 INFO : Completed import of Skyline document from P1_NHU024_025_033_growth_curve_2024-09-08_15-43-41.sky.zip
20 Jan 2025 10:19:20,526 INFO : 100% Done
20 Jan 2025 10:19:20,530 INFO : Starting import from NHU061_SIS_linearity_SI_paper_2024-09-08_16-06-18.sky.zip
20 Jan 2025 10:19:20,531 INFO : Starting to import Skyline document from NHU061_SIS_linearity_SI_paper_2024-09-08_16-06-18.sky.zip
20 Jan 2025 10:19:20,541 INFO : Expanding 220411_Background_proteome_targeted_proteins.protdb
20 Jan 2025 10:19:20,548 INFO : Expanding Zebrafish_consensus_library.sptxt
20 Jan 2025 10:19:25,856 INFO : Expanding 2015_01_09_zebrafish_it_consensus_final_true_lib.msp
20 Jan 2025 10:19:26,432 INFO : Expanding NHU061_SIS_linearity_SI_paper.skyd
20 Jan 2025 10:19:26,766 INFO : Expanding NHU061_SIS_linearity_SI_paper.sky.view
20 Jan 2025 10:19:26,768 INFO : Expanding NHU061_SIS_linearity_SI_paper.sky
20 Jan 2025 10:19:26,792 INFO : Expanding NHU061_SIS_linearity_SI_paper.skyl
20 Jan 2025 10:19:26,851 INFO : Reading Skyline file, NHU061_SIS_linearity_SI_paper.sky, to determine if the TransitionChromInfos in the document should be stored...
20 Jan 2025 10:19:26,875 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
20 Jan 2025 10:19:26,878 INFO : 1% Done
20 Jan 2025 10:19:27,119 INFO : Inserting actb1
20 Jan 2025 10:19:27,144 INFO : 2% Done
20 Jan 2025 10:19:27,159 INFO : Inserting Akt1
20 Jan 2025 10:19:27,180 INFO : 3% Done
20 Jan 2025 10:19:27,198 INFO : 4% Done
20 Jan 2025 10:19:27,216 INFO : 5% Done
20 Jan 2025 10:19:27,234 INFO : 6% Done
20 Jan 2025 10:19:27,265 INFO : Inserting AKT2_beta
20 Jan 2025 10:19:27,269 INFO : 7% Done
20 Jan 2025 10:19:27,304 INFO : 8% Done
20 Jan 2025 10:19:27,319 INFO : Inserting Akt3_gamma
20 Jan 2025 10:19:27,322 INFO : 9% Done
20 Jan 2025 10:19:27,340 INFO : 10% Done
20 Jan 2025 10:19:27,356 INFO : Inserting akt1s1
20 Jan 2025 10:19:27,376 INFO : 11% Done
20 Jan 2025 10:19:27,394 INFO : 12% Done
20 Jan 2025 10:19:27,413 INFO : 13% Done
20 Jan 2025 10:19:27,431 INFO : 14% Done
20 Jan 2025 10:19:27,464 INFO : Inserting eif4ebp1
20 Jan 2025 10:19:27,486 INFO : 15% Done
20 Jan 2025 10:19:27,505 INFO : 16% Done
20 Jan 2025 10:19:27,523 INFO : 17% Done
20 Jan 2025 10:19:27,539 INFO : Inserting ERK2
20 Jan 2025 10:19:27,543 INFO : 18% Done
20 Jan 2025 10:19:27,578 INFO : Inserting fkbp8
20 Jan 2025 10:19:27,599 INFO : 19% Done
20 Jan 2025 10:19:27,617 INFO : 20% Done
20 Jan 2025 10:19:27,633 INFO : Inserting hif1ab
20 Jan 2025 10:19:27,636 INFO : 21% Done
20 Jan 2025 10:19:27,655 INFO : 22% Done
20 Jan 2025 10:19:27,689 INFO : Inserting lamtor1
20 Jan 2025 10:19:27,708 INFO : Inserting lamtor2
20 Jan 2025 10:19:27,711 INFO : 23% Done
20 Jan 2025 10:19:27,727 INFO : Inserting GAPDH
20 Jan 2025 10:19:27,731 INFO : 24% Done
20 Jan 2025 10:19:27,748 INFO : Inserting lamtor5
20 Jan 2025 10:19:27,751 INFO : 25% Done
20 Jan 2025 10:19:27,770 INFO : 26% Done
20 Jan 2025 10:19:27,803 INFO : Inserting lpin1a
20 Jan 2025 10:19:27,821 INFO : 27% Done
20 Jan 2025 10:19:27,839 INFO : 28% Done
20 Jan 2025 10:19:27,855 INFO : Inserting LPIN1b
20 Jan 2025 10:19:27,858 INFO : 29% Done
20 Jan 2025 10:19:27,894 INFO : 30% Done
20 Jan 2025 10:19:27,932 INFO : 31% Done
20 Jan 2025 10:19:27,950 INFO : Inserting mlst8
20 Jan 2025 10:19:27,954 INFO : 32% Done
20 Jan 2025 10:19:27,974 INFO : 33% Done
20 Jan 2025 10:19:27,992 INFO : 34% Done
20 Jan 2025 10:19:28,008 INFO : Inserting mTOR
20 Jan 2025 10:19:28,046 INFO : 35% Done
20 Jan 2025 10:19:28,065 INFO : 36% Done
20 Jan 2025 10:19:28,083 INFO : 37% Done
20 Jan 2025 10:19:28,098 INFO : Inserting PAK1
20 Jan 2025 10:19:28,102 INFO : 38% Done
20 Jan 2025 10:19:28,136 INFO : Inserting pparg
20 Jan 2025 10:19:28,154 INFO : Inserting prkaa1
20 Jan 2025 10:19:28,157 INFO : 39% Done
20 Jan 2025 10:19:28,176 INFO : 40% Done
20 Jan 2025 10:19:28,195 INFO : 41% Done
20 Jan 2025 10:19:28,214 INFO : 42% Done
20 Jan 2025 10:19:28,267 INFO : 43% Done
20 Jan 2025 10:19:28,286 INFO : 44% Done
20 Jan 2025 10:19:28,304 INFO : 45% Done
20 Jan 2025 10:19:28,323 INFO : 46% Done
20 Jan 2025 10:19:28,357 INFO : Inserting prkaa2
20 Jan 2025 10:19:28,376 INFO : Inserting prkag1
20 Jan 2025 10:19:28,380 INFO : 47% Done
20 Jan 2025 10:19:28,398 INFO : 48% Done
20 Jan 2025 10:19:28,417 INFO : 49% Done
20 Jan 2025 10:19:28,435 INFO : 50% Done
20 Jan 2025 10:19:28,468 INFO : Inserting rheb
20 Jan 2025 10:19:28,488 INFO : 51% Done
20 Jan 2025 10:19:28,506 INFO : 52% Done
20 Jan 2025 10:19:28,522 INFO : Inserting Rictorb_isoform_X1
20 Jan 2025 10:19:28,526 INFO : 53% Done
20 Jan 2025 10:19:28,544 INFO : 54% Done
20 Jan 2025 10:19:28,578 INFO : Inserting RPS18
20 Jan 2025 10:19:28,579 INFO : Inserting rps6
20 Jan 2025 10:19:28,583 INFO : 55% Done
20 Jan 2025 10:19:28,619 INFO : 56% Done
20 Jan 2025 10:19:28,640 INFO : 57% Done
20 Jan 2025 10:19:28,658 INFO : Inserting rps6kb1a
20 Jan 2025 10:19:28,661 INFO : 58% Done
20 Jan 2025 10:19:28,697 INFO : 59% Done
20 Jan 2025 10:19:28,716 INFO : 60% Done
20 Jan 2025 10:19:28,751 INFO : 61% Done
20 Jan 2025 10:19:28,771 INFO : 62% Done
20 Jan 2025 10:19:28,792 INFO : Inserting rptor
20 Jan 2025 10:19:28,796 INFO : 63% Done
20 Jan 2025 10:19:28,831 INFO : 64% Done
20 Jan 2025 10:19:28,850 INFO : 65% Done
20 Jan 2025 10:19:28,868 INFO : 66% Done
20 Jan 2025 10:19:28,902 INFO : Inserting stk11
20 Jan 2025 10:19:28,923 INFO : 67% Done
20 Jan 2025 10:19:28,941 INFO : 68% Done
20 Jan 2025 10:19:28,958 INFO : Inserting tsc1b
20 Jan 2025 10:19:28,961 INFO : 69% Done
20 Jan 2025 10:19:28,979 INFO : 70% Done
20 Jan 2025 10:19:29,014 INFO : Inserting tsc2
20 Jan 2025 10:19:29,037 INFO : 71% Done
20 Jan 2025 10:19:29,055 INFO : 72% Done
20 Jan 2025 10:19:29,073 INFO : 73% Done
20 Jan 2025 10:19:29,091 INFO : 74% Done
20 Jan 2025 10:19:29,145 INFO : 75% Done
20 Jan 2025 10:19:29,164 INFO : 76% Done
20 Jan 2025 10:19:29,182 INFO : 77% Done
20 Jan 2025 10:19:29,200 INFO : 78% Done
20 Jan 2025 10:19:29,233 INFO : Inserting ulk1b
20 Jan 2025 10:19:29,255 INFO : 79% Done
20 Jan 2025 10:19:29,273 INFO : 80% Done
20 Jan 2025 10:19:29,289 INFO : Done parsing Skyline document.
20 Jan 2025 10:19:29,338 INFO : No group comparisons found.
20 Jan 2025 10:19:29,338 INFO : Calculating calibration curves
20 Jan 2025 10:19:29,352 INFO : 81% Done
20 Jan 2025 10:19:29,404 INFO : 82% Done
20 Jan 2025 10:19:29,450 INFO : 83% Done
20 Jan 2025 10:19:29,485 INFO : 84% Done
20 Jan 2025 10:19:29,503 INFO : 85% Done
20 Jan 2025 10:19:29,527 INFO : 86% Done
20 Jan 2025 10:19:29,540 INFO : 87% Done
20 Jan 2025 10:19:29,573 INFO : 88% Done
20 Jan 2025 10:19:29,620 INFO : 89% Done
20 Jan 2025 10:19:29,649 INFO : 90% Done
20 Jan 2025 10:19:29,667 INFO : 91% Done
20 Jan 2025 10:19:29,734 INFO : 92% Done
20 Jan 2025 10:19:29,780 INFO : 93% Done
20 Jan 2025 10:19:29,798 INFO : 94% Done
20 Jan 2025 10:19:29,822 INFO : 95% Done
20 Jan 2025 10:19:29,897 INFO : 96% Done
20 Jan 2025 10:19:29,932 INFO : 97% Done
20 Jan 2025 10:19:30,015 INFO : 98% Done
20 Jan 2025 10:19:30,230 INFO : Done calculating calibration curves.
20 Jan 2025 10:21:12,183 INFO : Creating and populating temp tables for Proportion values
20 Jan 2025 10:21:12,195 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
20 Jan 2025 10:21:12,331 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
20 Jan 2025 10:21:12,432 INFO : Cleaning up temp tables
20 Jan 2025 10:21:12,651 INFO : Completed import of Skyline document from NHU061_SIS_linearity_SI_paper_2024-09-08_16-06-18.sky.zip
20 Jan 2025 10:21:12,654 INFO : 100% Done
20 Jan 2025 10:21:12,658 INFO : Starting import from NHU060_SIS_Reproducibility_paper_2024-09-08_16-27-04.sky.zip
20 Jan 2025 10:21:12,659 INFO : Starting to import Skyline document from NHU060_SIS_Reproducibility_paper_2024-09-08_16-27-04.sky.zip
20 Jan 2025 10:21:12,670 INFO : Expanding 220411_Background_proteome_targeted_proteins.protdb
20 Jan 2025 10:21:12,677 INFO : Expanding Zebrafish_consensus_library.sptxt
20 Jan 2025 10:21:18,050 INFO : Expanding 2015_01_09_zebrafish_it_consensus_final_true_lib.msp
20 Jan 2025 10:21:18,617 INFO : Expanding NHU060_SIS_Reproducibility_paper.skyd
20 Jan 2025 10:21:19,252 INFO : Expanding NHU060_SIS_Reproducibility_paper.sky.view
20 Jan 2025 10:21:19,252 INFO : Expanding NHU060_SIS_Reproducibility_paper.sky
20 Jan 2025 10:21:19,296 INFO : Expanding NHU060_SIS_Reproducibility_paper.skyl
20 Jan 2025 10:21:19,355 INFO : Reading Skyline file, NHU060_SIS_Reproducibility_paper.sky, to determine if the TransitionChromInfos in the document should be stored...
20 Jan 2025 10:21:19,398 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
20 Jan 2025 10:21:19,401 INFO : 1% Done
20 Jan 2025 10:21:19,794 INFO : Inserting actb1
20 Jan 2025 10:21:19,832 INFO : 2% Done
20 Jan 2025 10:21:19,858 INFO : Inserting Akt1
20 Jan 2025 10:21:19,898 INFO : 3% Done
20 Jan 2025 10:21:19,929 INFO : 4% Done
20 Jan 2025 10:21:19,988 INFO : 5% Done
20 Jan 2025 10:21:20,017 INFO : 6% Done
20 Jan 2025 10:21:20,043 INFO : Inserting AKT2_beta
20 Jan 2025 10:21:20,080 INFO : 7% Done
20 Jan 2025 10:21:20,110 INFO : 8% Done
20 Jan 2025 10:21:20,137 INFO : Inserting Akt3_gamma
20 Jan 2025 10:21:20,142 INFO : 9% Done
20 Jan 2025 10:21:20,201 INFO : Inserting akt1s1
20 Jan 2025 10:21:20,206 INFO : 10% Done
20 Jan 2025 10:21:20,266 INFO : 11% Done
20 Jan 2025 10:21:20,296 INFO : 12% Done
20 Jan 2025 10:21:20,327 INFO : 13% Done
20 Jan 2025 10:21:20,381 INFO : Inserting eif4ebp1
20 Jan 2025 10:21:20,386 INFO : 14% Done
20 Jan 2025 10:21:20,445 INFO : 15% Done
20 Jan 2025 10:21:20,475 INFO : 16% Done
20 Jan 2025 10:21:20,501 INFO : Inserting ERK2
20 Jan 2025 10:21:20,507 INFO : 17% Done
20 Jan 2025 10:21:20,536 INFO : 18% Done
20 Jan 2025 10:21:20,561 INFO : Inserting fkbp8
20 Jan 2025 10:21:20,628 INFO : 19% Done
20 Jan 2025 10:21:20,656 INFO : Inserting hif1ab
20 Jan 2025 10:21:20,661 INFO : 20% Done
20 Jan 2025 10:21:20,691 INFO : 21% Done
20 Jan 2025 10:21:20,722 INFO : 22% Done
20 Jan 2025 10:21:20,748 INFO : Inserting lamtor1
20 Jan 2025 10:21:20,777 INFO : Inserting lamtor2
20 Jan 2025 10:21:20,811 INFO : Inserting GAPDH
20 Jan 2025 10:21:20,817 INFO : 23% Done
20 Jan 2025 10:21:20,846 INFO : Inserting lamtor5
20 Jan 2025 10:21:20,851 INFO : 24% Done
20 Jan 2025 10:21:20,881 INFO : 25% Done
20 Jan 2025 10:21:20,938 INFO : Inserting lpin1a
20 Jan 2025 10:21:20,943 INFO : 26% Done
20 Jan 2025 10:21:21,003 INFO : 27% Done
20 Jan 2025 10:21:21,028 INFO : Inserting LPIN1b
20 Jan 2025 10:21:21,033 INFO : 28% Done
20 Jan 2025 10:21:21,063 INFO : 29% Done
20 Jan 2025 10:21:21,092 INFO : 30% Done
20 Jan 2025 10:21:21,158 INFO : 31% Done
20 Jan 2025 10:21:21,194 INFO : Inserting mlst8
20 Jan 2025 10:21:21,200 INFO : 32% Done
20 Jan 2025 10:21:21,258 INFO : 33% Done
20 Jan 2025 10:21:21,284 INFO : Inserting mTOR
20 Jan 2025 10:21:21,289 INFO : 34% Done
20 Jan 2025 10:21:21,348 INFO : 35% Done
20 Jan 2025 10:21:21,378 INFO : 36% Done
20 Jan 2025 10:21:21,408 INFO : 37% Done
20 Jan 2025 10:21:21,435 INFO : Inserting PAK1
20 Jan 2025 10:21:21,440 INFO : 38% Done
20 Jan 2025 10:21:21,497 INFO : Inserting pparg
20 Jan 2025 10:21:21,527 INFO : Inserting prkaa1
20 Jan 2025 10:21:21,532 INFO : 39% Done
20 Jan 2025 10:21:21,565 INFO : 40% Done
20 Jan 2025 10:21:21,627 INFO : 41% Done
20 Jan 2025 10:21:21,657 INFO : 42% Done
20 Jan 2025 10:21:21,718 INFO : 43% Done
20 Jan 2025 10:21:21,748 INFO : 44% Done
20 Jan 2025 10:21:21,812 INFO : 45% Done
20 Jan 2025 10:21:21,844 INFO : 46% Done
20 Jan 2025 10:21:21,871 INFO : Inserting prkaa2
20 Jan 2025 10:21:21,903 INFO : Inserting prkag1
20 Jan 2025 10:21:21,908 INFO : 47% Done
20 Jan 2025 10:21:21,968 INFO : 48% Done
20 Jan 2025 10:21:21,998 INFO : 49% Done
20 Jan 2025 10:21:22,029 INFO : 50% Done
20 Jan 2025 10:21:22,055 INFO : Inserting rheb
20 Jan 2025 10:21:22,089 INFO : 51% Done
20 Jan 2025 10:21:22,148 INFO : Inserting Rictorb_isoform_X1
20 Jan 2025 10:21:22,153 INFO : 52% Done
20 Jan 2025 10:21:22,184 INFO : 53% Done
20 Jan 2025 10:21:22,214 INFO : 54% Done
20 Jan 2025 10:21:22,240 INFO : Inserting RPS18
20 Jan 2025 10:21:22,241 INFO : Inserting rps6
20 Jan 2025 10:21:22,275 INFO : 55% Done
20 Jan 2025 10:21:22,307 INFO : 56% Done
20 Jan 2025 10:21:22,339 INFO : 57% Done
20 Jan 2025 10:21:22,370 INFO : Inserting rps6kb1a
20 Jan 2025 10:21:22,375 INFO : 58% Done
20 Jan 2025 10:21:22,468 INFO : 59% Done
20 Jan 2025 10:21:22,502 INFO : 60% Done
20 Jan 2025 10:21:22,532 INFO : 61% Done
20 Jan 2025 10:21:22,565 INFO : 62% Done
20 Jan 2025 10:21:22,601 INFO : Inserting rptor
20 Jan 2025 10:21:22,635 INFO : 63% Done
20 Jan 2025 10:21:22,668 INFO : 64% Done
20 Jan 2025 10:21:22,729 INFO : 65% Done
20 Jan 2025 10:21:22,759 INFO : 66% Done
20 Jan 2025 10:21:22,786 INFO : Inserting stk11
20 Jan 2025 10:21:22,820 INFO : 67% Done
20 Jan 2025 10:21:22,849 INFO : 68% Done
20 Jan 2025 10:21:22,875 INFO : Inserting tsc1b
20 Jan 2025 10:21:22,880 INFO : 69% Done
20 Jan 2025 10:21:22,941 INFO : 70% Done
20 Jan 2025 10:21:22,967 INFO : Inserting tsc2
20 Jan 2025 10:21:23,004 INFO : 71% Done
20 Jan 2025 10:21:23,037 INFO : 72% Done
20 Jan 2025 10:21:23,068 INFO : 73% Done
20 Jan 2025 10:21:23,097 INFO : 74% Done
20 Jan 2025 10:21:23,184 INFO : 75% Done
20 Jan 2025 10:21:23,215 INFO : 76% Done
20 Jan 2025 10:21:23,245 INFO : 77% Done
20 Jan 2025 10:21:23,277 INFO : 78% Done
20 Jan 2025 10:21:23,332 INFO : Inserting ulk1b
20 Jan 2025 10:21:23,368 INFO : 79% Done
20 Jan 2025 10:21:23,397 INFO : 80% Done
20 Jan 2025 10:21:23,423 INFO : Done parsing Skyline document.
20 Jan 2025 10:21:23,474 INFO : No group comparisons found.
20 Jan 2025 10:21:23,474 INFO : Calculating calibration curves
20 Jan 2025 10:21:23,489 INFO : 81% Done
20 Jan 2025 10:21:23,548 INFO : 82% Done
20 Jan 2025 10:21:23,601 INFO : 83% Done
20 Jan 2025 10:21:23,642 INFO : 84% Done
20 Jan 2025 10:21:23,662 INFO : 85% Done
20 Jan 2025 10:21:23,689 INFO : 86% Done
20 Jan 2025 10:21:23,703 INFO : 87% Done
20 Jan 2025 10:21:23,743 INFO : 88% Done
20 Jan 2025 10:21:23,799 INFO : 89% Done
20 Jan 2025 10:21:23,832 INFO : 90% Done
20 Jan 2025 10:21:23,853 INFO : 91% Done
20 Jan 2025 10:21:23,929 INFO : 92% Done
20 Jan 2025 10:21:23,982 INFO : 93% Done
20 Jan 2025 10:21:24,003 INFO : 94% Done
20 Jan 2025 10:21:24,031 INFO : 95% Done
20 Jan 2025 10:21:24,118 INFO : 96% Done
20 Jan 2025 10:21:24,158 INFO : 97% Done
20 Jan 2025 10:21:24,256 INFO : 98% Done
20 Jan 2025 10:21:24,267 INFO : Done calculating calibration curves.
20 Jan 2025 10:22:51,092 INFO : Creating and populating temp tables for Proportion values
20 Jan 2025 10:22:51,109 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
20 Jan 2025 10:22:51,354 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
20 Jan 2025 10:22:51,537 INFO : Cleaning up temp tables
20 Jan 2025 10:22:51,767 INFO : Completed import of Skyline document from NHU060_SIS_Reproducibility_paper_2024-09-08_16-27-04.sky.zip
20 Jan 2025 10:22:51,770 INFO : 100% Done
20 Jan 2025 10:22:51,773 INFO : Starting import from NHU049_058_Fe_vs_TiO2_2025-01-19_17-46-22.sky.zip
20 Jan 2025 10:22:51,774 INFO : Starting to import Skyline document from NHU049_058_Fe_vs_TiO2_2025-01-19_17-46-22.sky.zip
20 Jan 2025 10:22:51,782 INFO : Expanding Zebrafish_whole_proteome.protdb
20 Jan 2025 10:22:55,101 INFO : Expanding Zebrafish_consensus_library.sptxt
20 Jan 2025 10:23:00,530 INFO : Expanding 2015_01_09_zebrafish_it_consensus_final_true_lib.msp
20 Jan 2025 10:23:01,127 INFO : Expanding NHU049_058_Fe_vs_TiO2.skyd
20 Jan 2025 10:23:01,410 INFO : Expanding NHU049_058_Fe_vs_TiO2.sky.view
20 Jan 2025 10:23:01,411 INFO : Expanding NHU049_058_Fe_vs_TiO2.sky
20 Jan 2025 10:23:01,429 INFO : Expanding NHU049_058_Fe_vs_TiO2.skyl
20 Jan 2025 10:23:01,480 INFO : Reading Skyline file, NHU049_058_Fe_vs_TiO2.sky, to determine if the TransitionChromInfos in the document should be stored...
20 Jan 2025 10:23:01,500 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
20 Jan 2025 10:23:01,502 INFO : 1% Done
20 Jan 2025 10:23:01,775 INFO : Inserting actb1
20 Jan 2025 10:23:01,780 INFO : 2% Done
20 Jan 2025 10:23:01,810 INFO : Inserting Akt1
20 Jan 2025 10:23:01,827 INFO : 3% Done
20 Jan 2025 10:23:01,844 INFO : 4% Done
20 Jan 2025 10:23:01,860 INFO : 5% Done
20 Jan 2025 10:23:01,876 INFO : 6% Done
20 Jan 2025 10:23:01,890 INFO : Inserting AKT2_beta
20 Jan 2025 10:23:01,909 INFO : 7% Done
20 Jan 2025 10:23:01,925 INFO : 8% Done
20 Jan 2025 10:23:01,939 INFO : Inserting Akt3_gamma
20 Jan 2025 10:23:01,958 INFO : 9% Done
20 Jan 2025 10:23:01,974 INFO : Inserting akt1s1
20 Jan 2025 10:23:01,977 INFO : 10% Done
20 Jan 2025 10:23:02,008 INFO : 11% Done
20 Jan 2025 10:23:02,024 INFO : 12% Done
20 Jan 2025 10:23:02,040 INFO : 13% Done
20 Jan 2025 10:23:02,069 INFO : Inserting eif4ebp1
20 Jan 2025 10:23:02,072 INFO : 14% Done
20 Jan 2025 10:23:02,104 INFO : 15% Done
20 Jan 2025 10:23:02,120 INFO : 16% Done
20 Jan 2025 10:23:02,133 INFO : Inserting ERK2
20 Jan 2025 10:23:02,137 INFO : 17% Done
20 Jan 2025 10:23:02,153 INFO : 18% Done
20 Jan 2025 10:23:02,167 INFO : Inserting fkbp8
20 Jan 2025 10:23:02,185 INFO : 19% Done
20 Jan 2025 10:23:02,214 INFO : Inserting hif1ab
20 Jan 2025 10:23:02,218 INFO : 20% Done
20 Jan 2025 10:23:02,234 INFO : 21% Done
20 Jan 2025 10:23:02,249 INFO : 22% Done
20 Jan 2025 10:23:02,263 INFO : Inserting lamtor1
20 Jan 2025 10:23:02,278 INFO : Inserting GAPDH
20 Jan 2025 10:23:02,282 INFO : 23% Done
20 Jan 2025 10:23:02,296 INFO : Inserting lamtor5
20 Jan 2025 10:23:02,300 INFO : 24% Done
20 Jan 2025 10:23:02,316 INFO : 25% Done
20 Jan 2025 10:23:02,333 INFO : 26% Done
20 Jan 2025 10:23:02,346 INFO : Inserting lpin1a
20 Jan 2025 10:23:02,379 INFO : 27% Done
20 Jan 2025 10:23:02,393 INFO : Inserting LPIN1b
20 Jan 2025 10:23:02,396 INFO : 28% Done
20 Jan 2025 10:23:02,412 INFO : 29% Done
20 Jan 2025 10:23:02,428 INFO : 30% Done
20 Jan 2025 10:23:02,459 INFO : 31% Done
20 Jan 2025 10:23:02,473 INFO : Inserting mlst8
20 Jan 2025 10:23:02,492 INFO : 32% Done
20 Jan 2025 10:23:02,508 INFO : 33% Done
20 Jan 2025 10:23:02,525 INFO : Inserting mTOR
20 Jan 2025 10:23:02,530 INFO : 34% Done
20 Jan 2025 10:23:02,563 INFO : 35% Done
20 Jan 2025 10:23:02,579 INFO : 36% Done
20 Jan 2025 10:23:02,595 INFO : 37% Done
20 Jan 2025 10:23:02,609 INFO : Inserting PAK1
20 Jan 2025 10:23:02,612 INFO : 38% Done
20 Jan 2025 10:23:02,642 INFO : Inserting prkaa1
20 Jan 2025 10:23:02,662 INFO : 39% Done
20 Jan 2025 10:23:02,678 INFO : 40% Done
20 Jan 2025 10:23:02,695 INFO : 41% Done
20 Jan 2025 10:23:02,711 INFO : 42% Done
20 Jan 2025 10:23:02,742 INFO : 43% Done
20 Jan 2025 10:23:02,774 INFO : 44% Done
20 Jan 2025 10:23:02,790 INFO : 45% Done
20 Jan 2025 10:23:02,808 INFO : 46% Done
20 Jan 2025 10:23:02,822 INFO : Inserting prkaa2
20 Jan 2025 10:23:02,838 INFO : Inserting prkag1
20 Jan 2025 10:23:02,841 INFO : 47% Done
20 Jan 2025 10:23:02,857 INFO : 48% Done
20 Jan 2025 10:23:02,889 INFO : 49% Done
20 Jan 2025 10:23:02,906 INFO : 50% Done
20 Jan 2025 10:23:02,919 INFO : Inserting rheb
20 Jan 2025 10:23:02,938 INFO : 51% Done
20 Jan 2025 10:23:02,954 INFO : 52% Done
20 Jan 2025 10:23:02,968 INFO : Inserting Rictorb_isoform_X1
20 Jan 2025 10:23:02,971 INFO : 53% Done
20 Jan 2025 10:23:02,987 INFO : 54% Done
20 Jan 2025 10:23:03,016 INFO : Inserting RPS18
20 Jan 2025 10:23:03,017 INFO : Inserting rps6
20 Jan 2025 10:23:03,038 INFO : 55% Done
20 Jan 2025 10:23:03,054 INFO : 56% Done
20 Jan 2025 10:23:03,068 INFO : Inserting rps6kb1a
20 Jan 2025 10:23:03,072 INFO : 57% Done
20 Jan 2025 10:23:03,088 INFO : 58% Done
20 Jan 2025 10:23:03,119 INFO : 59% Done
20 Jan 2025 10:23:03,134 INFO : 60% Done
20 Jan 2025 10:23:03,165 INFO : 61% Done
20 Jan 2025 10:23:03,179 INFO : Inserting rptor
20 Jan 2025 10:23:03,183 INFO : 62% Done
20 Jan 2025 10:23:03,214 INFO : 63% Done
20 Jan 2025 10:23:03,230 INFO : 64% Done
20 Jan 2025 10:23:03,245 INFO : 65% Done
20 Jan 2025 10:23:03,261 INFO : 66% Done
20 Jan 2025 10:23:03,275 INFO : Inserting stk11
20 Jan 2025 10:23:03,308 INFO : 67% Done
20 Jan 2025 10:23:03,322 INFO : Inserting tsc1b
20 Jan 2025 10:23:03,326 INFO : 68% Done
20 Jan 2025 10:23:03,342 INFO : 69% Done
20 Jan 2025 10:23:03,358 INFO : 70% Done
20 Jan 2025 10:23:03,372 INFO : Inserting tsc2
20 Jan 2025 10:23:03,391 INFO : 71% Done
20 Jan 2025 10:23:03,408 INFO : 72% Done
20 Jan 2025 10:23:03,424 INFO : 73% Done
20 Jan 2025 10:23:03,456 INFO : 74% Done
20 Jan 2025 10:23:03,487 INFO : 75% Done
20 Jan 2025 10:23:03,503 INFO : 76% Done
20 Jan 2025 10:23:03,519 INFO : 77% Done
20 Jan 2025 10:23:03,537 INFO : 78% Done
20 Jan 2025 10:23:03,565 INFO : Inserting ulk1b
20 Jan 2025 10:23:03,584 INFO : 79% Done
20 Jan 2025 10:23:03,600 INFO : 80% Done
20 Jan 2025 10:23:03,614 INFO : Done parsing Skyline document.
20 Jan 2025 10:23:03,663 INFO : No group comparisons found.
20 Jan 2025 10:23:03,663 INFO : Calculating calibration curves
20 Jan 2025 10:23:03,675 INFO : 81% Done
20 Jan 2025 10:23:03,714 INFO : 82% Done
20 Jan 2025 10:23:03,752 INFO : 83% Done
20 Jan 2025 10:23:03,772 INFO : 84% Done
20 Jan 2025 10:23:03,797 INFO : 85% Done
20 Jan 2025 10:23:03,817 INFO : 86% Done
20 Jan 2025 10:23:03,823 INFO : 87% Done
20 Jan 2025 10:23:03,852 INFO : 88% Done
20 Jan 2025 10:23:03,890 INFO : 89% Done
20 Jan 2025 10:23:03,915 INFO : 90% Done
20 Jan 2025 10:23:03,975 INFO : 91% Done
20 Jan 2025 10:23:04,005 INFO : 92% Done
20 Jan 2025 10:23:04,019 INFO : 93% Done
20 Jan 2025 10:23:04,036 INFO : 94% Done
20 Jan 2025 10:23:04,083 INFO : 95% Done
20 Jan 2025 10:23:04,112 INFO : 96% Done
20 Jan 2025 10:23:04,141 INFO : 97% Done
20 Jan 2025 10:23:04,212 INFO : 98% Done
20 Jan 2025 10:23:04,222 INFO : Done calculating calibration curves.
20 Jan 2025 10:24:06,766 INFO : Creating and populating temp tables for Proportion values
20 Jan 2025 10:24:06,776 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
20 Jan 2025 10:24:06,883 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
20 Jan 2025 10:24:06,964 INFO : Cleaning up temp tables
20 Jan 2025 10:24:07,206 INFO : Completed import of Skyline document from NHU049_058_Fe_vs_TiO2_2025-01-19_17-46-22.sky.zip
20 Jan 2025 10:24:07,209 INFO : 100% Done
20 Jan 2025 10:24:07,214 INFO : Starting import from NHU054_matrix_2025-01-19_18-06-20.sky.zip
20 Jan 2025 10:24:07,215 INFO : Starting to import Skyline document from NHU054_matrix_2025-01-19_18-06-20.sky.zip
20 Jan 2025 10:24:07,221 INFO : Expanding 220411_Background_proteome_targeted_proteins.protdb
20 Jan 2025 10:24:07,228 INFO : Expanding Zebrafish_consensus_library.sptxt
20 Jan 2025 10:24:12,538 INFO : Expanding 2015_01_09_zebrafish_it_consensus_final_true_lib.msp
20 Jan 2025 10:24:13,087 INFO : Expanding NHU054_matrix.skyd
20 Jan 2025 10:24:13,206 INFO : Expanding NHU054_matrix.sky.view
20 Jan 2025 10:24:13,206 INFO : Expanding NHU054_matrix.sky
20 Jan 2025 10:24:13,214 INFO : Expanding NHU054_matrix.skyl
20 Jan 2025 10:24:13,268 INFO : Reading Skyline file, NHU054_matrix.sky, to determine if the TransitionChromInfos in the document should be stored...
20 Jan 2025 10:24:13,276 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
20 Jan 2025 10:24:13,278 INFO : 1% Done
20 Jan 2025 10:24:13,513 INFO : Inserting actb1
20 Jan 2025 10:24:13,517 INFO : 2% Done
20 Jan 2025 10:24:13,532 INFO : Inserting Akt1
20 Jan 2025 10:24:13,535 INFO : 3% Done
20 Jan 2025 10:24:13,541 INFO : 4% Done
20 Jan 2025 10:24:13,549 INFO : 5% Done
20 Jan 2025 10:24:13,562 INFO : 6% Done
20 Jan 2025 10:24:13,570 INFO : Inserting AKT2_beta
20 Jan 2025 10:24:13,580 INFO : 7% Done
20 Jan 2025 10:24:13,586 INFO : 8% Done
20 Jan 2025 10:24:13,593 INFO : Inserting Akt3_gamma
20 Jan 2025 10:24:13,595 INFO : 10% Done
20 Jan 2025 10:24:13,620 INFO : Inserting akt1s1
20 Jan 2025 10:24:13,622 INFO : 11% Done
20 Jan 2025 10:24:13,632 INFO : 12% Done
20 Jan 2025 10:24:13,641 INFO : 13% Done
20 Jan 2025 10:24:13,646 INFO : 14% Done
20 Jan 2025 10:24:13,658 INFO : Inserting eif4ebp1
20 Jan 2025 10:24:13,661 INFO : 15% Done
20 Jan 2025 10:24:13,672 INFO : 16% Done
20 Jan 2025 10:24:13,681 INFO : 17% Done
20 Jan 2025 10:24:13,689 INFO : Inserting ERK2
20 Jan 2025 10:24:13,692 INFO : 18% Done
20 Jan 2025 10:24:13,700 INFO : Inserting fkbp8
20 Jan 2025 10:24:13,703 INFO : 19% Done
20 Jan 2025 10:24:13,716 INFO : 20% Done
20 Jan 2025 10:24:13,723 INFO : Inserting hif1ab
20 Jan 2025 10:24:13,725 INFO : 21% Done
20 Jan 2025 10:24:13,730 INFO : 22% Done
20 Jan 2025 10:24:13,741 INFO : Inserting lamtor1
20 Jan 2025 10:24:13,744 INFO : 23% Done
20 Jan 2025 10:24:13,753 INFO : Inserting lamtor2
20 Jan 2025 10:24:13,757 INFO : Inserting GAPDH
20 Jan 2025 10:24:13,760 INFO : 25% Done
20 Jan 2025 10:24:13,769 INFO : Inserting lamtor5
20 Jan 2025 10:24:13,776 INFO : 26% Done
20 Jan 2025 10:24:13,788 INFO : Inserting lpin1a
20 Jan 2025 10:24:13,790 INFO : 27% Done
20 Jan 2025 10:24:13,800 INFO : 28% Done
20 Jan 2025 10:24:13,807 INFO : Inserting LPIN1b
20 Jan 2025 10:24:13,809 INFO : 29% Done
20 Jan 2025 10:24:13,817 INFO : 30% Done
20 Jan 2025 10:24:13,830 INFO : 31% Done
20 Jan 2025 10:24:13,839 INFO : 32% Done
20 Jan 2025 10:24:13,844 INFO : Inserting mlst8
20 Jan 2025 10:24:13,851 INFO : 33% Done
20 Jan 2025 10:24:13,860 INFO : 34% Done
20 Jan 2025 10:24:13,864 INFO : Inserting mTOR
20 Jan 2025 10:24:13,874 INFO : 35% Done
20 Jan 2025 10:24:13,880 INFO : 36% Done
20 Jan 2025 10:24:13,888 INFO : 37% Done
20 Jan 2025 10:24:13,893 INFO : 38% Done
20 Jan 2025 10:24:13,901 INFO : Inserting PAK1
20 Jan 2025 10:24:13,911 INFO : Inserting pparg
20 Jan 2025 10:24:13,914 INFO : Inserting prkaa1
20 Jan 2025 10:24:13,917 INFO : 39% Done
20 Jan 2025 10:24:13,922 INFO : 40% Done
20 Jan 2025 10:24:13,936 INFO : 41% Done
20 Jan 2025 10:24:13,944 INFO : 42% Done
20 Jan 2025 10:24:13,955 INFO : 43% Done
20 Jan 2025 10:24:13,968 INFO : 44% Done
20 Jan 2025 10:24:13,976 INFO : 45% Done
20 Jan 2025 10:24:13,981 INFO : 46% Done
20 Jan 2025 10:24:13,989 INFO : Inserting prkaa2
20 Jan 2025 10:24:13,997 INFO : Inserting prkag1
20 Jan 2025 10:24:14,004 INFO : 47% Done
20 Jan 2025 10:24:14,013 INFO : 48% Done
20 Jan 2025 10:24:14,022 INFO : 49% Done
20 Jan 2025 10:24:14,028 INFO : 50% Done
20 Jan 2025 10:24:14,035 INFO : Inserting rheb
20 Jan 2025 10:24:14,046 INFO : 51% Done
20 Jan 2025 10:24:14,053 INFO : Inserting Rictorb_isoform_X1
20 Jan 2025 10:24:14,056 INFO : 52% Done
20 Jan 2025 10:24:14,064 INFO : 53% Done
20 Jan 2025 10:24:14,073 INFO : 54% Done
20 Jan 2025 10:24:14,080 INFO : Inserting RPS18
20 Jan 2025 10:24:14,085 INFO : Inserting rps6
20 Jan 2025 10:24:14,088 INFO : 55% Done
20 Jan 2025 10:24:14,097 INFO : 56% Done
20 Jan 2025 10:24:14,106 INFO : 57% Done
20 Jan 2025 10:24:14,115 INFO : Inserting rps6kb1a
20 Jan 2025 10:24:14,117 INFO : 58% Done
20 Jan 2025 10:24:14,130 INFO : 59% Done
20 Jan 2025 10:24:14,139 INFO : 60% Done
20 Jan 2025 10:24:14,147 INFO : 61% Done
20 Jan 2025 10:24:14,152 INFO : 62% Done
20 Jan 2025 10:24:14,165 INFO : Inserting rptor
20 Jan 2025 10:24:14,168 INFO : 63% Done
20 Jan 2025 10:24:14,184 INFO : 65% Done
20 Jan 2025 10:24:14,197 INFO : 66% Done
20 Jan 2025 10:24:14,209 INFO : Inserting stk11
20 Jan 2025 10:24:14,216 INFO : 67% Done
20 Jan 2025 10:24:14,225 INFO : 68% Done
20 Jan 2025 10:24:14,230 INFO : Inserting tsc1b
20 Jan 2025 10:24:14,237 INFO : 69% Done
20 Jan 2025 10:24:14,246 INFO : 70% Done
20 Jan 2025 10:24:14,257 INFO : Inserting tsc2
20 Jan 2025 10:24:14,260 INFO : 71% Done
20 Jan 2025 10:24:14,270 INFO : 72% Done
20 Jan 2025 10:24:14,278 INFO : 73% Done
20 Jan 2025 10:24:14,284 INFO : 74% Done
20 Jan 2025 10:24:14,297 INFO : 75% Done
20 Jan 2025 10:24:14,309 INFO : 76% Done
20 Jan 2025 10:24:14,318 INFO : 77% Done
20 Jan 2025 10:24:14,323 INFO : 78% Done
20 Jan 2025 10:24:14,334 INFO : Inserting ulk1b
20 Jan 2025 10:24:14,337 INFO : 79% Done
20 Jan 2025 10:24:14,350 INFO : 80% Done
20 Jan 2025 10:24:14,357 INFO : Done parsing Skyline document.
20 Jan 2025 10:24:14,405 INFO : No group comparisons found.
20 Jan 2025 10:24:14,405 INFO : Calculating calibration curves
20 Jan 2025 10:24:14,419 INFO : 81% Done
20 Jan 2025 10:24:14,460 INFO : 82% Done
20 Jan 2025 10:24:14,503 INFO : 83% Done
20 Jan 2025 10:24:14,530 INFO : 84% Done
20 Jan 2025 10:24:14,546 INFO : 85% Done
20 Jan 2025 10:24:14,567 INFO : 86% Done
20 Jan 2025 10:24:14,580 INFO : 87% Done
20 Jan 2025 10:24:14,607 INFO : 88% Done
20 Jan 2025 10:24:14,646 INFO : 89% Done
20 Jan 2025 10:24:14,671 INFO : 90% Done
20 Jan 2025 10:24:14,685 INFO : 91% Done
20 Jan 2025 10:24:14,741 INFO : 92% Done
20 Jan 2025 10:24:14,778 INFO : 93% Done
20 Jan 2025 10:24:14,796 INFO : 94% Done
20 Jan 2025 10:24:14,822 INFO : 95% Done
20 Jan 2025 10:24:14,885 INFO : 96% Done
20 Jan 2025 10:24:14,915 INFO : 97% Done
20 Jan 2025 10:24:14,984 INFO : 98% Done
20 Jan 2025 10:24:14,994 INFO : Done calculating calibration curves.
20 Jan 2025 10:25:34,227 INFO : Creating and populating temp tables for Proportion values
20 Jan 2025 10:25:34,233 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
20 Jan 2025 10:25:34,265 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
20 Jan 2025 10:25:34,285 INFO : Cleaning up temp tables
20 Jan 2025 10:25:34,515 INFO : Completed import of Skyline document from NHU054_matrix_2025-01-19_18-06-20.sky.zip
20 Jan 2025 10:25:34,519 INFO : 100% Done
20 Jan 2025 10:25:35,665 INFO : Done importing xar
20 Jan 2025 10:25:35,667 INFO : Loading pages and webpart properties
20 Jan 2025 10:25:35,724 INFO : Done importing 4 page(s) with 6 webpart(s)
20 Jan 2025 10:25:35,724 INFO : Loading File Browser config
20 Jan 2025 10:25:35,725 INFO : Done importing File Browser config
20 Jan 2025 10:25:35,726 INFO : Starting Sample Status Data import
20 Jan 2025 10:25:35,726 INFO : No sample types XAR file to process.
20 Jan 2025 10:25:35,726 INFO : Finished importing Sample Status Data
20 Jan 2025 10:25:35,733 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
20 Jan 2025 10:25:35,734 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
20 Jan 2025 10:25:35,734 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
20 Jan 2025 10:25:35,734 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
20 Jan 2025 10:25:35,735 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
20 Jan 2025 10:25:35,735 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
20 Jan 2025 10:25:35,736 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
20 Jan 2025 10:25:35,745 INFO : Moving files to folder /Panorama Public/2025/EAWAG Environmental Toxicology - mTOR_zf_PAC2_growth_curve and creating symlinks
20 Jan 2025 10:25:36,213 INFO : Aligning data files urls in folder: /Panorama Public/2025/EAWAG Environmental Toxicology - mTOR_zf_PAC2_growth_curve
20 Jan 2025 10:25:36,232 INFO : Importing files metadata.
20 Jan 2025 10:25:36,233 INFO :
20 Jan 2025 10:25:36,233 INFO : Experiment import completed successfully.
20 Jan 2025 10:25:36,233 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
20 Jan 2025 10:25:36,252 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
20 Jan 2025 10:25:36,252 INFO :
20 Jan 2025 10:25:36,252 INFO : Checking for library folders.
20 Jan 2025 10:25:36,253 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
20 Jan 2025 10:25:36,266 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
20 Jan 2025 10:25:36,266 INFO :
20 Jan 2025 10:25:36,266 INFO : Finishing up experiment copy.
20 Jan 2025 10:25:36,268 INFO : Updating TargetedMS experiment entry in target folder /Panorama Public/2025/EAWAG Environmental Toxicology - mTOR_zf_PAC2_growth_curve
20 Jan 2025 10:25:36,268 INFO : Setting version on new experiment to 1
20 Jan 2025 10:25:36,270 INFO : Updating permanent link to point to the new copy of the data.
20 Jan 2025 10:25:36,287 INFO : Removing copy permissions given to Panorama Public
20 Jan 2025 10:25:36,290 INFO : Adding read permissions to all users that are folder admins in the source folder.
20 Jan 2025 10:25:36,290 INFO : Assigning ReaderRole to nikolai.huwa@eawag.ch
20 Jan 2025 10:25:36,291 INFO : Assigning ReaderRole to ksenia.groh@eawag.ch
20 Jan 2025 10:25:36,291 INFO : Assigning PanoramaPublicSubmitterRole to nikolai.huwa@eawag.ch
20 Jan 2025 10:25:36,291 INFO : Assigning PanoramaPublicSubmitterRole to ksenia.groh@eawag.ch
20 Jan 2025 10:25:36,296 INFO : Adding user nikolai.huwa@eawag.ch to group Panorama Public Submitters
20 Jan 2025 10:25:36,299 INFO : Adding user ksenia.groh@eawag.ch to group Panorama Public Submitters
20 Jan 2025 10:25:36,300 INFO : Updating the 'Raw Data' tab configuration
20 Jan 2025 10:25:36,301 INFO : Creating a reviewer account.
20 Jan 2025 10:25:36,343 INFO : Created reviewer with email: panorama+reviewer320@proteinms.net
20 Jan 2025 10:25:36,343 INFO : Generating password.
20 Jan 2025 10:25:36,479 INFO : Set reviewer password successfully.
20 Jan 2025 10:25:36,484 INFO : Adding user panorama+reviewer320@proteinms.net to group Reviewers
20 Jan 2025 10:25:36,485 INFO : Hiding the Data Pipeline tab.
20 Jan 2025 10:25:36,488 INFO : Updating Submission. Setting copiedExperimentId to 1989
20 Jan 2025 10:25:38,382 INFO : Assigning a ProteomeXchange ID.
20 Jan 2025 10:25:38,810 INFO : Assigned ProteomeXchange ID: PXD059986
20 Jan 2025 10:25:38,810 INFO : Assigning a DOI.
20 Jan 2025 10:25:39,715 INFO : Assigned DOI: 10.6069/4y7h-f034
20 Jan 2025 10:25:39,784 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'