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Validating data for experiment Id: 1838, validation Id: 954

University of Eastern Finland - LRL_IRD_MS_rd10

Job Status

Created: 2024-05-29 23:22:52
Modified: 2024-05-29 23:22:52
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Validating data for experiment Id: 1838, validation Id: 954
File Path: /data/labkey/files/Panorama Public/2024/University of Eastern Finland - LRL_IRD_MS_rd10/@files/Experiment_Validation_1929_2024-05-29_23-22-51.log
Files: Experiment_Validation_1929_2024-05-29_23-22-51.log
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Log File


29 May 2024 23:22:52,023 INFO : Validating data for a ProteomeXchange submission.
29 May 2024 23:22:52,024 INFO : =======================================
29 May 2024 23:22:52,055 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.PxDataValidationTask' at location 'webserver'
29 May 2024 23:22:52,057 INFO : Validating data for experiment Id: 1838, validation Id: 954
29 May 2024 23:22:52,065 INFO : Validating data for 1 Skyline documents in 1 folders
29 May 2024 23:22:52,069 INFO : Sample file validation for Skyline document: IRD_UEF_DIANN_Skyline_rd10_2024-05-27_12-53-06.sky.zip
29 May 2024 23:22:52,069 INFO :   Found all sample files.
29 May 2024 23:22:52,240 INFO : Modifications validation:
29 May 2024 23:22:52,240 INFO : VALID MODIFICATIONS:
29 May 2024 23:22:52,240 INFO : 6367: Carbamidomethyl (C): UNIMOD:4 - Carbamidomethyl
29 May 2024 23:22:52,240 INFO :     IRD_UEF_DIANN_Skyline_rd10_2024-05-27_12-53-06.sky.zip
29 May 2024 23:22:52,240 INFO : 6368: Oxidation (M): UNIMOD:35 - Oxidation
29 May 2024 23:22:52,240 INFO :     IRD_UEF_DIANN_Skyline_rd10_2024-05-27_12-53-06.sky.zip
29 May 2024 23:22:52,240 INFO : INVALID MODIFICATIONS (No Unimod ID):
29 May 2024 23:22:52,242 INFO : Validating spectral library: IRD_UEF_DIANN_Skyline_rd10.blib
29 May 2024 23:22:52,262 INFO : 'IRD_UEF_DIANN_Skyline_rd10' (IRD_UEF_DIANN_Skyline_rd10.blib) library in 1 Skyline documents was built with 8 raw files; 1 peptide Id files. Status: Missing spectrum  files.
29 May 2024 23:22:52,262 INFO :   MISSING FILES:
29 May 2024 23:22:52,262 INFO :     Spectrum File: 20230424_NMRMS_025
29 May 2024 23:22:52,262 INFO :     Spectrum File: 20230424_NMRMS_026
29 May 2024 23:22:52,263 INFO :     Spectrum File: 20230424_NMRMS_027
29 May 2024 23:22:52,263 INFO :     Spectrum File: 20230424_NMRMS_028
29 May 2024 23:22:52,263 INFO :     Spectrum File: 20230424_NMRMS_029
29 May 2024 23:22:52,263 INFO :     Spectrum File: 20230424_NMRMS_030
29 May 2024 23:22:52,263 INFO :     Spectrum File: 20230424_NMRMS_031
29 May 2024 23:22:52,263 INFO :     Spectrum File: 20230424_NMRMS_032
29 May 2024 23:22:52,263 INFO : Spectral library validation complete.
29 May 2024 23:22:52,263 INFO : Data validation is complete. Status is IncompleteMetadata
29 May 2024 23:22:52,263 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.PxDataValidationTask'