Copying experiment: Coho ovarian tissue response to gonadotropins

UW Nunn Lab - Coho Salmon Targeted MS 2022

Job Status

Created: 2024-05-21 22:55:35
Modified: 2024-05-21 22:56:04
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Copying experiment: Coho ovarian tissue response to gonadotropins
File Path: /data/labkey/files/Panorama Public/2024/UW Nunn Lab - Coho Salmon Targeted MS 2022/@files/Experiment_1907.log
Files: Experiment_1907.log
Completed Runs: Coho SRM for panorama_2024-05-21_11-24-52.sky.zip

Log File


21 May 2024 22:55:35,717 INFO : Copying experiment "Coho ovarian tissue response to gonadotropins" from folder /UW - Nunn Lab/Coho Salmon Targeted MS 2022 to /Panorama Public/2024/UW Nunn Lab - Coho Salmon Targeted MS 2022
21 May 2024 22:55:35,717 INFO : =======================================
21 May 2024 22:55:35,759 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
21 May 2024 22:55:35,759 INFO :
21 May 2024 22:55:35,759 INFO : Exporting experiment.
21 May 2024 22:55:48,135 INFO : Exporting files metadata.
21 May 2024 22:55:48,211 INFO :
21 May 2024 22:55:48,211 INFO : Experiment export completed successfully.
21 May 2024 22:55:48,211 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
21 May 2024 22:55:48,234 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
21 May 2024 22:55:48,234 INFO :
21 May 2024 22:55:48,234 INFO : Importing experiment.
21 May 2024 22:55:48,287 INFO : Loading folder properties (folder type, settings and active modules)
21 May 2024 22:55:48,382 INFO : Done importing folder properties (folder type, settings and active modules)
21 May 2024 22:55:48,383 INFO : Loading container specific module properties
21 May 2024 22:55:48,388 INFO : Done importing container specific module properties
21 May 2024 22:55:48,389 INFO : Loading queries
21 May 2024 22:55:48,443 INFO : 1 query imported
21 May 2024 22:55:48,443 INFO : Done importing queries
21 May 2024 22:55:48,445 INFO : Loading etl definitions
21 May 2024 22:55:48,446 INFO : Loading wikis
21 May 2024 22:55:48,449 INFO : 0 wikis imported
21 May 2024 22:55:48,449 INFO : Done importing wikis
21 May 2024 22:55:48,451 INFO : Starting Data Class Importer
21 May 2024 22:55:48,451 INFO : No types XAR file to process.
21 May 2024 22:55:48,451 INFO : Finished Data Class Importer
21 May 2024 22:55:48,452 INFO : Starting to copy files
21 May 2024 22:55:48,452 INFO : Copied 0 files
21 May 2024 22:55:48,452 INFO : Ensuring exp.data rows exist for imported files
21 May 2024 22:55:48,525 INFO : Starting Sample Type Importer
21 May 2024 22:55:48,526 INFO : No types XAR file to process.
21 May 2024 22:55:48,526 INFO : Finished Sample Type Importer
21 May 2024 22:55:48,527 INFO : Loading xar
21 May 2024 22:55:50,670 INFO : Starting import from Coho SRM for panorama_2024-05-21_11-24-52.sky.zip
21 May 2024 22:55:50,673 INFO : Starting to import Skyline document from Coho SRM for panorama_2024-05-21_11-24-52.sky.zip
21 May 2024 22:55:50,716 INFO : Expanding Coho biomarkers.protdb
21 May 2024 22:55:50,741 INFO : Expanding coho iRT PRTC.irtdb
21 May 2024 22:55:50,742 INFO : Expanding Coho SRM for panorama.skyd
21 May 2024 22:55:51,831 INFO : Expanding Coho SRM for panorama.sky.view
21 May 2024 22:55:51,832 INFO : Expanding Coho SRM for panorama.sky
21 May 2024 22:55:51,859 INFO : Expanding Coho SRM for panorama.skyl
21 May 2024 22:55:51,948 WARN : The version of this Skyline document is 23.12. This is newer than the highest supported version 23.1
21 May 2024 22:55:51,952 INFO : 1% Done
21 May 2024 22:55:52,748 INFO : Inserting PRTC peptides
21 May 2024 22:55:52,753 INFO : 2% Done
21 May 2024 22:55:52,793 INFO : 3% Done
21 May 2024 22:55:52,836 INFO : 4% Done
21 May 2024 22:55:52,880 INFO : 5% Done
21 May 2024 22:55:52,922 INFO : 6% Done
21 May 2024 22:55:52,962 INFO : 7% Done
21 May 2024 22:55:53,007 INFO : 8% Done
21 May 2024 22:55:53,051 INFO : 9% Done
21 May 2024 22:55:53,138 INFO : 10% Done
21 May 2024 22:55:53,183 INFO : 11% Done
21 May 2024 22:55:53,228 INFO : 12% Done
21 May 2024 22:55:53,272 INFO : 13% Done
21 May 2024 22:55:53,317 INFO : 14% Done
21 May 2024 22:55:53,355 INFO : Inserting 14-3-3 protein beta/theta/zeta XP_020338733.1
21 May 2024 22:55:53,364 INFO : 15% Done
21 May 2024 22:55:53,425 INFO : 16% Done
21 May 2024 22:55:53,473 INFO : 17% Done
21 May 2024 22:55:53,529 INFO : Inserting 17β-hydroxysteroid dehydrogenase XP_020349388.1
21 May 2024 22:55:53,539 INFO : 18% Done
21 May 2024 22:55:53,596 INFO : 19% Done
21 May 2024 22:55:53,654 INFO : 20% Done
21 May 2024 22:55:53,704 INFO : Inserting anti mullerian hormone ADV40928.1
21 May 2024 22:55:53,714 INFO : 21% Done
21 May 2024 22:55:53,782 INFO : 23% Done
21 May 2024 22:55:53,852 INFO : 24% Done
21 May 2024 22:55:53,916 INFO : 25% Done
21 May 2024 22:55:53,976 INFO : Inserting Aromatase XP_031668791.1
21 May 2024 22:55:54,036 INFO : Inserting catenin beta 1 XP_020315244.1
21 May 2024 22:55:54,045 INFO : 26% Done
21 May 2024 22:55:54,095 INFO : Inserting cathepsin D XP_020348792.1
21 May 2024 22:55:54,105 INFO : 27% Done
21 May 2024 22:55:54,166 INFO : 28% Done
21 May 2024 22:55:54,222 INFO : Inserting complement C1q XP_031671511.1
21 May 2024 22:55:54,231 INFO : 29% Done
21 May 2024 22:55:54,283 INFO : 30% Done
21 May 2024 22:55:54,323 INFO : Inserting complement C3 XP_020309580.1
21 May 2024 22:55:54,331 INFO : 31% Done
21 May 2024 22:55:54,384 INFO : 32% Done
21 May 2024 22:55:54,444 INFO : 33% Done
21 May 2024 22:55:54,500 INFO : Inserting complement component C9 XP_020340480.1
21 May 2024 22:55:54,509 INFO : 34% Done
21 May 2024 22:55:54,568 INFO : 35% Done
21 May 2024 22:55:54,622 INFO : Inserting complement factor B XP_020321310.2
21 May 2024 22:55:54,630 INFO : 36% Done
21 May 2024 22:55:54,693 INFO : 37% Done
21 May 2024 22:55:54,754 INFO : Inserting complement factor H XP_020355162.2
21 May 2024 22:55:54,761 INFO : 38% Done
21 May 2024 22:55:54,818 INFO : 39% Done
21 May 2024 22:55:54,928 INFO : 40% Done
21 May 2024 22:55:54,928 INFO : Inserting complement factor I XP_031647448.1
21 May 2024 22:55:54,998 INFO : 41% Done
21 May 2024 22:55:55,060 INFO : 42% Done
21 May 2024 22:55:55,121 INFO : Inserting estrogen receptor 1 XP_031647671.1
21 May 2024 22:55:55,128 INFO : 43% Done
21 May 2024 22:55:55,185 INFO : 44% Done
21 May 2024 22:55:55,255 INFO : 45% Done
21 May 2024 22:55:55,316 INFO : Inserting ferritin XP_020332301.2
21 May 2024 22:55:55,325 INFO : 46% Done
21 May 2024 22:55:55,388 INFO : 47% Done
21 May 2024 22:55:55,440 INFO : 48% Done
21 May 2024 22:55:55,494 INFO : 49% Done
21 May 2024 22:55:55,569 INFO : Inserting Forkhead transcription factor 2 XP_031667265.1
21 May 2024 22:55:55,600 INFO : 50% Done
21 May 2024 22:55:55,726 INFO : Inserting glucose-6-phosphate 1-dehydrogenase XP_020314994.1
21 May 2024 22:55:55,752 INFO : 51% Done
21 May 2024 22:55:55,834 INFO : 52% Done
21 May 2024 22:55:55,893 INFO : 53% Done
21 May 2024 22:55:55,954 INFO : 54% Done
21 May 2024 22:55:56,001 INFO : Inserting glucosidase XP_031683306.1
21 May 2024 22:55:56,009 INFO : 55% Done
21 May 2024 22:55:56,067 INFO : 56% Done
21 May 2024 22:55:56,129 INFO : 57% Done
21 May 2024 22:55:56,188 INFO : Inserting GTPase HRas XP_020312648.1
21 May 2024 22:55:56,198 INFO : 58% Done
21 May 2024 22:55:56,262 INFO : 59% Done
21 May 2024 22:55:56,320 INFO : Inserting high choriolytic enzyme XP_031658182.1
21 May 2024 22:55:56,331 INFO : 60% Done
21 May 2024 22:55:56,394 INFO : 61% Done
21 May 2024 22:55:56,455 INFO : 62% Done
21 May 2024 22:55:56,511 INFO : Inserting HSP 90 XP_020352444.1
21 May 2024 22:55:56,519 INFO : 63% Done
21 May 2024 22:55:56,574 INFO : 64% Done
21 May 2024 22:55:56,632 INFO : 65% Done
21 May 2024 22:55:56,682 INFO : Inserting insulin-like growth factor 2 XP_020355577.1
21 May 2024 22:55:56,691 INFO : 66% Done
21 May 2024 22:55:56,751 INFO : 67% Done
21 May 2024 22:55:56,809 INFO : 68% Done
21 May 2024 22:55:56,854 INFO : Inserting integrin beta 2 XP_020318468.1
21 May 2024 22:55:56,864 INFO : 69% Done
21 May 2024 22:55:56,932 INFO : 70% Done
21 May 2024 22:55:56,985 INFO : Inserting low-density lipoprotein receptor XP_031650450.1
21 May 2024 22:55:56,995 INFO : 71% Done
21 May 2024 22:55:57,058 INFO : 72% Done
21 May 2024 22:55:57,112 INFO : Inserting L-rhamnose-binding lectin XP_031674840.1
21 May 2024 22:55:57,121 INFO : 73% Done
21 May 2024 22:55:57,191 INFO : 74% Done
21 May 2024 22:55:57,268 INFO : Inserting malate dehydrogenase XP_020341172.1
21 May 2024 22:55:57,331 INFO : 75% Done
21 May 2024 22:55:57,383 INFO : Inserting nuclear receptor coactivator 2 XP_020339547.1
21 May 2024 22:55:57,392 INFO : 76% Done
21 May 2024 22:55:57,455 INFO : 77% Done
21 May 2024 22:55:57,509 INFO : Inserting peroxiredoxin-4 XP_020319856.1
21 May 2024 22:55:57,518 INFO : 78% Done
21 May 2024 22:55:57,579 INFO : 79% Done
21 May 2024 22:55:57,625 INFO : Inserting plasminogen activator inhibitor XP_031689398.1
21 May 2024 22:55:57,634 INFO : 80% Done
21 May 2024 22:55:57,693 INFO : Inserting progesterone receptor XP_020319890.2
21 May 2024 22:55:57,702 INFO : 81% Done
21 May 2024 22:55:57,756 INFO : Inserting pyruvate kinase XP_031657427.1
21 May 2024 22:55:57,765 INFO : 82% Done
21 May 2024 22:55:57,824 INFO : 83% Done
21 May 2024 22:55:57,885 INFO : 84% Done
21 May 2024 22:55:57,940 INFO : Inserting scavenger receptor class B XP_031664827.1
21 May 2024 22:55:57,951 INFO : 86% Done
21 May 2024 22:55:58,015 INFO : 87% Done
21 May 2024 22:55:58,062 INFO : Inserting sex hormone-binding globulin XP_020359917.1
21 May 2024 22:55:58,072 INFO : 88% Done
21 May 2024 22:55:58,137 INFO : 89% Done
21 May 2024 22:55:58,196 INFO : Inserting Succinate--CoA ligase XP_020314027.2
21 May 2024 22:55:58,206 INFO : 90% Done
21 May 2024 22:55:58,266 INFO : 91% Done
21 May 2024 22:55:58,318 INFO : Inserting very low density lipoportein receptor XP_031674511.1
21 May 2024 22:55:58,328 INFO : 92% Done
21 May 2024 22:55:58,394 INFO : 93% Done
21 May 2024 22:55:58,446 INFO : Inserting zona pellucida sperm-binding protein 3 XP_020322060.1
21 May 2024 22:55:58,456 INFO : 94% Done
21 May 2024 22:55:58,523 INFO : 95% Done
21 May 2024 22:55:58,577 INFO : Inserting ZP domain-containing protein XP_020359782.1
21 May 2024 22:55:58,586 INFO : 96% Done
21 May 2024 22:55:58,657 INFO : 97% Done
21 May 2024 22:55:58,719 INFO : 98% Done
21 May 2024 22:55:58,785 INFO : Done parsing Skyline document.
21 May 2024 22:55:58,785 INFO : Calculating iRT correlations for 62 sample(s)
21 May 2024 22:55:58,789 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,790 INFO : Successfully calculated iRT regression line from 81 shared peptides.
21 May 2024 22:55:58,790 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,791 INFO : Successfully calculated iRT regression line from 79 shared peptides.
21 May 2024 22:55:58,791 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,792 INFO : Successfully calculated iRT regression line from 79 shared peptides.
21 May 2024 22:55:58,793 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,793 INFO : Successfully calculated iRT regression line from 81 shared peptides.
21 May 2024 22:55:58,794 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,794 INFO : Successfully calculated iRT regression line from 81 shared peptides.
21 May 2024 22:55:58,795 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,795 INFO : Successfully calculated iRT regression line from 81 shared peptides.
21 May 2024 22:55:58,796 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,796 INFO : Successfully calculated iRT regression line from 80 shared peptides.
21 May 2024 22:55:58,797 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,798 INFO : Successfully calculated iRT regression line from 81 shared peptides.
21 May 2024 22:55:58,798 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,799 INFO : Successfully calculated iRT regression line from 80 shared peptides.
21 May 2024 22:55:58,799 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,800 INFO : Successfully calculated iRT regression line from 84 shared peptides.
21 May 2024 22:55:58,800 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,801 INFO : Successfully calculated iRT regression line from 81 shared peptides.
21 May 2024 22:55:58,801 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,802 INFO : Successfully calculated iRT regression line from 81 shared peptides.
21 May 2024 22:55:58,802 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,803 INFO : Successfully calculated iRT regression line from 79 shared peptides.
21 May 2024 22:55:58,803 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,804 INFO : Successfully calculated iRT regression line from 81 shared peptides.
21 May 2024 22:55:58,804 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,805 INFO : Successfully calculated iRT regression line from 82 shared peptides.
21 May 2024 22:55:58,805 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,806 INFO : Successfully calculated iRT regression line from 81 shared peptides.
21 May 2024 22:55:58,806 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,807 INFO : Successfully calculated iRT regression line from 85 shared peptides.
21 May 2024 22:55:58,808 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,808 INFO : Successfully calculated iRT regression line from 80 shared peptides.
21 May 2024 22:55:58,809 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,809 INFO : Successfully calculated iRT regression line from 78 shared peptides.
21 May 2024 22:55:58,810 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,810 INFO : Successfully calculated iRT regression line from 83 shared peptides.
21 May 2024 22:55:58,811 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,811 INFO : Successfully calculated iRT regression line from 80 shared peptides.
21 May 2024 22:55:58,812 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,813 INFO : Successfully calculated iRT regression line from 80 shared peptides.
21 May 2024 22:55:58,813 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,814 INFO : Successfully calculated iRT regression line from 73 shared peptides.
21 May 2024 22:55:58,814 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,815 INFO : Successfully calculated iRT regression line from 81 shared peptides.
21 May 2024 22:55:58,816 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,816 INFO : Successfully calculated iRT regression line from 81 shared peptides.
21 May 2024 22:55:58,817 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,818 INFO : Successfully calculated iRT regression line from 79 shared peptides.
21 May 2024 22:55:58,818 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,819 INFO : Successfully calculated iRT regression line from 77 shared peptides.
21 May 2024 22:55:58,819 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,820 INFO : Successfully calculated iRT regression line from 76 shared peptides.
21 May 2024 22:55:58,820 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,821 INFO : Successfully calculated iRT regression line from 76 shared peptides.
21 May 2024 22:55:58,822 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,822 INFO : Successfully calculated iRT regression line from 80 shared peptides.
21 May 2024 22:55:58,823 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,824 INFO : Successfully calculated iRT regression line from 77 shared peptides.
21 May 2024 22:55:58,824 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,825 INFO : Successfully calculated iRT regression line from 82 shared peptides.
21 May 2024 22:55:58,826 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,826 INFO : Successfully calculated iRT regression line from 79 shared peptides.
21 May 2024 22:55:58,827 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,827 INFO : Successfully calculated iRT regression line from 79 shared peptides.
21 May 2024 22:55:58,828 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,828 INFO : Successfully calculated iRT regression line from 84 shared peptides.
21 May 2024 22:55:58,829 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,830 INFO : Successfully calculated iRT regression line from 75 shared peptides.
21 May 2024 22:55:58,830 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,831 INFO : Successfully calculated iRT regression line from 83 shared peptides.
21 May 2024 22:55:58,831 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,832 INFO : Successfully calculated iRT regression line from 79 shared peptides.
21 May 2024 22:55:58,833 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,833 INFO : Successfully calculated iRT regression line from 83 shared peptides.
21 May 2024 22:55:58,834 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,834 INFO : Successfully calculated iRT regression line from 63 shared peptides.
21 May 2024 22:55:58,835 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,835 INFO : Successfully calculated iRT regression line from 81 shared peptides.
21 May 2024 22:55:58,836 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,836 INFO : Successfully calculated iRT regression line from 73 shared peptides.
21 May 2024 22:55:58,837 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,838 INFO : Successfully calculated iRT regression line from 81 shared peptides.
21 May 2024 22:55:58,838 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,839 INFO : Successfully calculated iRT regression line from 76 shared peptides.
21 May 2024 22:55:58,839 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,840 INFO : Successfully calculated iRT regression line from 82 shared peptides.
21 May 2024 22:55:58,840 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,841 INFO : Successfully calculated iRT regression line from 81 shared peptides.
21 May 2024 22:55:58,842 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,842 INFO : Successfully calculated iRT regression line from 80 shared peptides.
21 May 2024 22:55:58,843 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,843 INFO : Successfully calculated iRT regression line from 77 shared peptides.
21 May 2024 22:55:58,844 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,844 INFO : Successfully calculated iRT regression line from 80 shared peptides.
21 May 2024 22:55:58,845 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,845 INFO : Successfully calculated iRT regression line from 82 shared peptides.
21 May 2024 22:55:58,846 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,847 INFO : Successfully calculated iRT regression line from 78 shared peptides.
21 May 2024 22:55:58,847 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,848 INFO : Successfully calculated iRT regression line from 80 shared peptides.
21 May 2024 22:55:58,848 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,849 INFO : Successfully calculated iRT regression line from 82 shared peptides.
21 May 2024 22:55:58,849 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,850 INFO : Successfully calculated iRT regression line from 77 shared peptides.
21 May 2024 22:55:58,851 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,851 INFO : Successfully calculated iRT regression line from 79 shared peptides.
21 May 2024 22:55:58,852 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,852 INFO : Successfully calculated iRT regression line from 81 shared peptides.
21 May 2024 22:55:58,853 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,853 INFO : Successfully calculated iRT regression line from 80 shared peptides.
21 May 2024 22:55:58,854 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,855 INFO : Successfully calculated iRT regression line from 80 shared peptides.
21 May 2024 22:55:58,855 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,856 INFO : Successfully calculated iRT regression line from 81 shared peptides.
21 May 2024 22:55:58,856 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,857 INFO : Successfully calculated iRT regression line from 78 shared peptides.
21 May 2024 22:55:58,857 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,858 INFO : Successfully calculated iRT regression line from 82 shared peptides.
21 May 2024 22:55:58,859 INFO : Attempting to calculate iRT regression line from shared peptides.
21 May 2024 22:55:58,859 INFO : Successfully calculated iRT regression line from 75 shared peptides.
21 May 2024 22:55:58,860 INFO : Finished calculating iRT correlations for all samples. 62 had a regression line calculated.
21 May 2024 22:55:59,604 INFO : Creating and populating temp tables for Proportion values
21 May 2024 22:55:59,625 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
21 May 2024 22:55:59,895 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
21 May 2024 22:56:00,094 INFO : Cleaning up temp tables
21 May 2024 22:56:00,434 INFO : Completed import of Skyline document from Coho SRM for panorama_2024-05-21_11-24-52.sky.zip
21 May 2024 22:56:00,438 INFO : 100% Done
21 May 2024 22:56:00,447 INFO : Done importing xar
21 May 2024 22:56:00,449 INFO : Loading pages and webpart properties
21 May 2024 22:56:00,511 INFO : Done importing 3 page(s) with 5 webpart(s)
21 May 2024 22:56:00,511 INFO : Loading File Browser config
21 May 2024 22:56:00,511 INFO : Done importing File Browser config
21 May 2024 22:56:00,512 INFO : Starting Sample Status Data import
21 May 2024 22:56:00,512 INFO : No sample types XAR file to process.
21 May 2024 22:56:00,512 INFO : Finished importing Sample Status Data
21 May 2024 22:56:00,516 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
21 May 2024 22:56:00,518 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
21 May 2024 22:56:00,518 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
21 May 2024 22:56:00,519 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
21 May 2024 22:56:00,519 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
21 May 2024 22:56:00,519 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
21 May 2024 22:56:00,521 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
21 May 2024 22:56:00,530 INFO : Moving files to folder /Panorama Public/2024/UW Nunn Lab - Coho Salmon Targeted MS 2022 and creating symlinks
21 May 2024 22:56:00,799 INFO : Aligning data files urls in folder: /Panorama Public/2024/UW Nunn Lab - Coho Salmon Targeted MS 2022
21 May 2024 22:56:00,804 INFO : Importing files metadata.
21 May 2024 22:56:00,805 INFO :
21 May 2024 22:56:00,805 INFO : Experiment import completed successfully.
21 May 2024 22:56:00,805 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
21 May 2024 22:56:00,825 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
21 May 2024 22:56:00,825 INFO :
21 May 2024 22:56:00,825 INFO : Checking for library folders.
21 May 2024 22:56:00,827 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
21 May 2024 22:56:00,842 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
21 May 2024 22:56:00,842 INFO :
21 May 2024 22:56:00,842 INFO : Finishing up experiment copy.
21 May 2024 22:56:00,844 INFO : Updating TargetedMS experiment entry in target folder /Panorama Public/2024/UW Nunn Lab - Coho Salmon Targeted MS 2022
21 May 2024 22:56:00,844 INFO : Setting version on new experiment to 1
21 May 2024 22:56:00,846 INFO : Updating permanent link to point to the new copy of the data.
21 May 2024 22:56:00,873 INFO : Removing copy permissions given to Panorama Public
21 May 2024 22:56:00,875 INFO : Adding read permissions to all users that are folder admins in the source folder.
21 May 2024 22:56:00,876 INFO : Assigning ReaderRole to emmats@uw.edu
21 May 2024 22:56:00,876 INFO : Assigning ReaderRole to brookh@uw.edu
21 May 2024 22:56:00,876 INFO : Assigning PanoramaPublicSubmitterRole to emmats@uw.edu
21 May 2024 22:56:00,876 INFO : Assigning PanoramaPublicSubmitterRole to brookh@uw.edu
21 May 2024 22:56:00,882 INFO : User emmats@uw.edu is already a member of group Panorama Public Submitters
21 May 2024 22:56:00,882 INFO : User brookh@uw.edu is already a member of group Panorama Public Submitters
21 May 2024 22:56:00,882 INFO : Updating the 'Raw Data' tab configuration
21 May 2024 22:56:00,882 INFO : Making folder public.
21 May 2024 22:56:00,885 INFO : Hiding the Data Pipeline tab.
21 May 2024 22:56:00,889 INFO : Updating Submission. Setting copiedExperimentId to 1826
21 May 2024 22:56:02,980 INFO : Assigning a ProteomeXchange ID.
21 May 2024 22:56:03,197 INFO : Assigned ProteomeXchange ID: PXD052463
21 May 2024 22:56:03,197 INFO : Assigning a DOI.
21 May 2024 22:56:04,134 INFO : Assigned DOI: 10.6069/bgbz-zd96
21 May 2024 22:56:04,212 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'