10 Oct 2024 11:48:15,691 INFO : Copying experiment "Streamlining Workflows in Ion Mobility Data Acquisition, Calibration and Processing: A Cross-Platform Assessment of Drift Tube and Traveling Wave Methodologies" from folder /UNC - Baker Lab/6560 and MOBIE Assessment to /Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment
10 Oct 2024 11:48:15,691 INFO : =======================================
10 Oct 2024 11:48:15,714 DEBUG: Resetting Job ID: 152ed239-6966-103d-907c-dc22ffcdca10
10 Oct 2024 11:48:15,741 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
10 Oct 2024 11:48:15,741 INFO :
10 Oct 2024 11:48:15,741 INFO : Exporting experiment.
10 Oct 2024 11:48:17,246 INFO : Exporting files metadata.
10 Oct 2024 11:48:17,246 DEBUG: [/UNC - Baker Lab/6560 and MOBIE Assessment] Writing files metadata to /data/labkey/files/Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment/@files/export
10 Oct 2024 11:48:17,248 INFO :
10 Oct 2024 11:48:17,248 INFO : Experiment export completed successfully.
10 Oct 2024 11:48:17,248 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
10 Oct 2024 11:48:17,270 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
10 Oct 2024 11:48:17,270 INFO :
10 Oct 2024 11:48:17,270 INFO : Importing experiment.
10 Oct 2024 11:48:17,271 DEBUG: [/Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment] Importing folder properties from: /data/labkey/files/Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment/@files/export
10 Oct 2024 11:48:17,272 INFO : Loading folder properties (folder type, settings and active modules)
10 Oct 2024 11:48:17,272 DEBUG: [/Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment] Folder type: Targeted MS
10 Oct 2024 11:48:17,272 DEBUG: [/Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment] Active modules: Query, Search, Assay, Pipeline, TargetedMS, FileContent, API, Wiki, MS2, Announcements, Issues, PanoramaPublic, Core, Experiment
10 Oct 2024 11:48:17,359 INFO : Done importing folder properties (folder type, settings and active modules)
10 Oct 2024 11:48:17,360 INFO : Loading container specific module properties
10 Oct 2024 11:48:17,364 INFO : Done importing container specific module properties
10 Oct 2024 11:48:17,366 INFO : Loading queries
10 Oct 2024 11:48:17,368 INFO : 1 query imported
10 Oct 2024 11:48:17,368 INFO : Done importing queries
10 Oct 2024 11:48:17,370 INFO : Loading etl definitions
10 Oct 2024 11:48:17,371 INFO : Loading wikis
10 Oct 2024 11:48:17,373 INFO : 0 wikis imported
10 Oct 2024 11:48:17,373 INFO : Done importing wikis
10 Oct 2024 11:48:17,374 INFO : Starting Data Class Importer
10 Oct 2024 11:48:17,374 INFO : No types XAR file to process.
10 Oct 2024 11:48:17,374 INFO : Finished Data Class Importer
10 Oct 2024 11:48:17,375 INFO : Starting to copy files
10 Oct 2024 11:48:17,375 INFO : Copied 0 files
10 Oct 2024 11:48:17,375 INFO : Ensuring exp.data rows exist for imported files
10 Oct 2024 11:48:17,447 INFO : Starting Sample Type Importer
10 Oct 2024 11:48:17,447 INFO : No types XAR file to process.
10 Oct 2024 11:48:17,447 INFO : Finished Sample Type Importer
10 Oct 2024 11:48:17,448 INFO : Loading xar
10 Oct 2024 11:48:17,727 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-14040:TargetedMS.ImportSkyZip'
10 Oct 2024 11:48:17,729 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-14040:TargetedMS.ImportSkyZip.Core'
10 Oct 2024 11:48:17,731 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-14040:TargetedMS.ImportSkyZip.Output'
10 Oct 2024 11:48:17,731 DEBUG: Protocol import complete
10 Oct 2024 11:48:17,733 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-14040:Streamlining+Workflows+in+Ion+Mobility+Data+Acquisition%2C+Calibration+and+Processing%3A+A+Cross-Platform+Assessment+of+Drift+Tube+and+Traveling+Wave+Methodologies'
10 Oct 2024 11:48:17,733 DEBUG: Experiment/Run group import complete
10 Oct 2024 11:48:17,741 DEBUG: Protocol action set import complete
10 Oct 2024 11:48:17,748 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-14040:TargetedMS.ImportSkyZip'
10 Oct 2024 11:48:17,754 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-14040:4f1f37e0-6890-103d-907c-dc22ffcdca10'
10 Oct 2024 11:48:17,758 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-14040:4f1f37aa-6890-103d-907c-dc22ffcdca10'
10 Oct 2024 11:48:17,758 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-14040:TargetedMS.ImportSkyZip.Core'
10 Oct 2024 11:48:17,760 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-14040:TargetedMS.ImportSkyZip.Output'
10 Oct 2024 11:48:17,760 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-14040:4f1f3a29-6890-103d-907c-dc22ffcdca10'
10 Oct 2024 11:48:17,765 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-14040:TargetedMS.ImportSkyZip'
10 Oct 2024 11:48:17,770 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-14040:b17a0443-6890-103d-907c-dc22ffcdca10'
10 Oct 2024 11:48:17,773 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-14040:b17a0401-6890-103d-907c-dc22ffcdca10'
10 Oct 2024 11:48:17,773 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-14040:TargetedMS.ImportSkyZip.Core'
10 Oct 2024 11:48:17,775 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-14040:TargetedMS.ImportSkyZip.Output'
10 Oct 2024 11:48:17,775 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-14040:b17a0666-6890-103d-907c-dc22ffcdca10'
10 Oct 2024 11:48:17,782 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2024/UNC%20Baker%20Lab%20-%206560%20and%20MOBIE%20Assessment/@files/export/xar/experiments_and_runs.xar.exploded/Run225455/6560%20Quant%20Oct%202024_2024-10-09_13-18-13/6560%20Quant%20Oct%202024.skyd into the system
10 Oct 2024 11:48:17,783 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2024/UNC%20Baker%20Lab%20-%206560%20and%20MOBIE%20Assessment/@files/export/xar/experiments_and_runs.xar.exploded/Run225455/6560%20Quant%20Oct%202024_2024-10-09_13-18-13/6560%20Quant%20Oct%202024.skyd into the system
10 Oct 2024 11:48:17,783 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2024/UNC%20Baker%20Lab%20-%206560%20and%20MOBIE%20Assessment/@files/export/xar/experiments_and_runs.xar.exploded/Run225455/6560%20Quant%20Oct%202024_2024-10-09_13-18-13.sky.zip into the system
10 Oct 2024 11:48:17,783 INFO : Starting import from 6560 Quant Oct 2024_2024-10-09_13-18-13.sky.zip
10 Oct 2024 11:48:17,786 INFO : Starting to import Skyline document from 6560 Quant Oct 2024_2024-10-09_13-18-13.sky.zip
10 Oct 2024 11:48:17,787 INFO : Expanding 6560 Quant Oct 2024.skyd
10 Oct 2024 11:48:17,830 INFO : Expanding 6560 Quant Oct 2024.sky.view
10 Oct 2024 11:48:17,831 INFO : Expanding 6560 Quant Oct 2024.sky
10 Oct 2024 11:48:17,838 INFO : Expanding 6560 Quant Oct 2024.skyl
10 Oct 2024 11:48:17,840 INFO : Reading Skyline file, 6560 Quant Oct 2024.sky, to determine if the TransitionChromInfos in the document should be stored...
10 Oct 2024 11:48:17,855 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
10 Oct 2024 11:48:17,855 WARN : The version of this Skyline document is 24.1. This is newer than the highest supported version 23.1
10 Oct 2024 11:48:17,858 INFO : 2% Done
10 Oct 2024 11:48:17,878 DEBUG: Starting to load chromatogram headers
10 Oct 2024 11:48:17,888 DEBUG: Done loading chromatogram headers
10 Oct 2024 11:48:18,140 INFO : Inserting PFAS (-) PFSA
10 Oct 2024 11:48:18,149 INFO : 6% Done
10 Oct 2024 11:48:18,248 INFO : 9% Done
10 Oct 2024 11:48:18,299 INFO : 13% Done
10 Oct 2024 11:48:18,353 INFO : 15% Done
10 Oct 2024 11:48:18,396 INFO : 20% Done
10 Oct 2024 11:48:18,450 DEBUG: Total molecules inserted: 5
10 Oct 2024 11:48:18,450 INFO : Inserting PFAS (-) PFCA
10 Oct 2024 11:48:18,456 INFO : 22% Done
10 Oct 2024 11:48:18,506 INFO : 25% Done
10 Oct 2024 11:48:18,558 INFO : 29% Done
10 Oct 2024 11:48:18,623 INFO : 34% Done
10 Oct 2024 11:48:18,690 INFO : 38% Done
10 Oct 2024 11:48:18,748 INFO : 42% Done
10 Oct 2024 11:48:18,808 INFO : 47% Done
10 Oct 2024 11:48:18,867 INFO : 52% Done
10 Oct 2024 11:48:18,926 INFO : 56% Done
10 Oct 2024 11:48:18,973 DEBUG: Total molecules inserted: 9
10 Oct 2024 11:48:18,973 INFO : Inserting PFAS (-) FT
10 Oct 2024 11:48:18,978 INFO : 58% Done
10 Oct 2024 11:48:19,014 INFO : 61% Done
10 Oct 2024 11:48:19,053 INFO : 63% Done
10 Oct 2024 11:48:19,085 DEBUG: Total molecules inserted: 3
10 Oct 2024 11:48:19,085 INFO : Inserting PFAS (-) PFECA
10 Oct 2024 11:48:19,091 INFO : 66% Done
10 Oct 2024 11:48:19,141 INFO : 68% Done
10 Oct 2024 11:48:19,175 INFO : 69% Done
10 Oct 2024 11:48:19,209 INFO : 71% Done
10 Oct 2024 11:48:19,244 INFO : 74% Done
10 Oct 2024 11:48:19,274 DEBUG: Total molecules inserted: 5
10 Oct 2024 11:48:19,274 INFO : Inserting PFAS (-) PFESA
10 Oct 2024 11:48:19,281 INFO : 76% Done
10 Oct 2024 11:48:19,316 INFO : 78% Done
10 Oct 2024 11:48:19,346 DEBUG: Total molecules inserted: 2
10 Oct 2024 11:48:19,346 INFO : Inserting EPA 533
10 Oct 2024 11:48:19,352 INFO : 80% Done
10 Oct 2024 11:48:19,382 DEBUG: Total molecules inserted: 1
10 Oct 2024 11:48:19,382 INFO : Done parsing Skyline document.
10 Oct 2024 11:48:19,451 INFO : No group comparisons found.
10 Oct 2024 11:48:19,451 INFO : Calculating calibration curves
10 Oct 2024 11:48:19,451 DEBUG: Calculating calibration curve for PFAS (-) PFSA, 1 of 6
10 Oct 2024 11:48:19,505 INFO : 83% Done
10 Oct 2024 11:48:19,505 DEBUG: Calculating calibration curve for PFAS (-) PFCA, 2 of 6
10 Oct 2024 11:48:19,609 INFO : 86% Done
10 Oct 2024 11:48:19,609 DEBUG: Calculating calibration curve for PFAS (-) FT, 3 of 6
10 Oct 2024 11:48:19,631 INFO : 89% Done
10 Oct 2024 11:48:19,631 DEBUG: Calculating calibration curve for PFAS (-) PFECA, 4 of 6
10 Oct 2024 11:48:19,670 INFO : 92% Done
10 Oct 2024 11:48:19,670 DEBUG: Calculating calibration curve for PFAS (-) PFESA, 5 of 6
10 Oct 2024 11:48:19,685 INFO : 95% Done
10 Oct 2024 11:48:19,685 DEBUG: Calculating calibration curve for EPA 533, 6 of 6
10 Oct 2024 11:48:19,694 INFO : 98% Done
10 Oct 2024 11:48:19,821 INFO : Done calculating calibration curves.
10 Oct 2024 11:48:19,874 INFO : Creating and populating temp tables for Proportion values
10 Oct 2024 11:48:19,888 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
10 Oct 2024 11:48:20,026 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
10 Oct 2024 11:48:20,090 INFO : Cleaning up temp tables
10 Oct 2024 11:48:20,438 INFO : Completed import of Skyline document from 6560 Quant Oct 2024_2024-10-09_13-18-13.sky.zip
10 Oct 2024 11:48:20,440 INFO : 100% Done
10 Oct 2024 11:48:20,445 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2024/UNC%20Baker%20Lab%20-%206560%20and%20MOBIE%20Assessment/@files/export/xar/experiments_and_runs.xar.exploded/Run225455/6560%20Quant%20Oct%202024_2024-10-09_13-18-13.sky.zip into the system
10 Oct 2024 11:48:20,445 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2024/UNC%20Baker%20Lab%20-%206560%20and%20MOBIE%20Assessment/@files/export/xar/experiments_and_runs.xar.exploded/Run225456/MOBIE%20Quant%20Oct%202024_2024-10-09_13-20-22/MOBIE%20Quant%20Oct%202024.skyd into the system
10 Oct 2024 11:48:20,445 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2024/UNC%20Baker%20Lab%20-%206560%20and%20MOBIE%20Assessment/@files/export/xar/experiments_and_runs.xar.exploded/Run225456/MOBIE%20Quant%20Oct%202024_2024-10-09_13-20-22/MOBIE%20Quant%20Oct%202024.skyd into the system
10 Oct 2024 11:48:20,445 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2024/UNC%20Baker%20Lab%20-%206560%20and%20MOBIE%20Assessment/@files/export/xar/experiments_and_runs.xar.exploded/Run225456/MOBIE%20Quant%20Oct%202024_2024-10-09_13-20-22.sky.zip into the system
10 Oct 2024 11:48:20,446 INFO : Starting import from MOBIE Quant Oct 2024_2024-10-09_13-20-22.sky.zip
10 Oct 2024 11:48:20,448 INFO : Starting to import Skyline document from MOBIE Quant Oct 2024_2024-10-09_13-20-22.sky.zip
10 Oct 2024 11:48:20,448 INFO : Expanding Sept 28 Hot Source CCS.imsdb
10 Oct 2024 11:48:20,449 INFO : Expanding MOBIE Quant Oct 2024.skyd
10 Oct 2024 11:48:20,565 INFO : Expanding MOBIE Quant Oct 2024.sky.view
10 Oct 2024 11:48:20,567 INFO : Expanding MOBIE Quant Oct 2024.sky
10 Oct 2024 11:48:20,574 INFO : Expanding MOBIE Quant Oct 2024.skyl
10 Oct 2024 11:48:20,576 INFO : Reading Skyline file, MOBIE Quant Oct 2024.sky, to determine if the TransitionChromInfos in the document should be stored...
10 Oct 2024 11:48:20,591 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
10 Oct 2024 11:48:20,591 WARN : The version of this Skyline document is 24.1. This is newer than the highest supported version 23.1
10 Oct 2024 11:48:20,593 INFO : 2% Done
10 Oct 2024 11:48:20,736 DEBUG: Starting to load chromatogram headers
10 Oct 2024 11:48:20,745 DEBUG: Done loading chromatogram headers
10 Oct 2024 11:48:21,019 INFO : Inserting PFAS (-) PFSA
10 Oct 2024 11:48:21,027 INFO : 6% Done
10 Oct 2024 11:48:21,082 INFO : 8% Done
10 Oct 2024 11:48:21,118 INFO : 13% Done
10 Oct 2024 11:48:21,168 INFO : 15% Done
10 Oct 2024 11:48:21,211 INFO : 19% Done
10 Oct 2024 11:48:21,256 DEBUG: Total molecules inserted: 5
10 Oct 2024 11:48:21,257 INFO : Inserting PFAS (-) PFCA
10 Oct 2024 11:48:21,263 INFO : 22% Done
10 Oct 2024 11:48:21,324 INFO : 27% Done
10 Oct 2024 11:48:21,402 INFO : 31% Done
10 Oct 2024 11:48:21,476 INFO : 35% Done
10 Oct 2024 11:48:21,539 INFO : 39% Done
10 Oct 2024 11:48:21,593 INFO : 44% Done
10 Oct 2024 11:48:21,647 INFO : 48% Done
10 Oct 2024 11:48:21,700 INFO : 52% Done
10 Oct 2024 11:48:21,751 INFO : 57% Done
10 Oct 2024 11:48:21,796 DEBUG: Total molecules inserted: 9
10 Oct 2024 11:48:21,796 INFO : Inserting PFAS (-) FT
10 Oct 2024 11:48:21,802 INFO : 58% Done
10 Oct 2024 11:48:21,842 INFO : 61% Done
10 Oct 2024 11:48:21,876 INFO : 63% Done
10 Oct 2024 11:48:21,904 DEBUG: Total molecules inserted: 3
10 Oct 2024 11:48:21,904 INFO : Inserting PFAS (-) PFECA
10 Oct 2024 11:48:21,909 INFO : 65% Done
10 Oct 2024 11:48:21,942 INFO : 67% Done
10 Oct 2024 11:48:21,983 INFO : 70% Done
10 Oct 2024 11:48:22,026 INFO : 71% Done
10 Oct 2024 11:48:22,062 INFO : 74% Done
10 Oct 2024 11:48:22,095 DEBUG: Total molecules inserted: 5
10 Oct 2024 11:48:22,095 INFO : Inserting PFAS (-) PFESA
10 Oct 2024 11:48:22,101 INFO : 76% Done
10 Oct 2024 11:48:22,146 INFO : 78% Done
10 Oct 2024 11:48:22,183 DEBUG: Total molecules inserted: 2
10 Oct 2024 11:48:22,183 INFO : Inserting EPA 533
10 Oct 2024 11:48:22,188 INFO : 80% Done
10 Oct 2024 11:48:22,226 DEBUG: Total molecules inserted: 1
10 Oct 2024 11:48:22,226 INFO : Done parsing Skyline document.
10 Oct 2024 11:48:22,292 INFO : No group comparisons found.
10 Oct 2024 11:48:22,292 INFO : Calculating calibration curves
10 Oct 2024 11:48:22,292 DEBUG: Calculating calibration curve for PFAS (-) PFSA, 1 of 6
10 Oct 2024 11:48:22,345 INFO : 83% Done
10 Oct 2024 11:48:22,345 DEBUG: Calculating calibration curve for PFAS (-) PFCA, 2 of 6
10 Oct 2024 11:48:22,450 INFO : 86% Done
10 Oct 2024 11:48:22,450 DEBUG: Calculating calibration curve for PFAS (-) FT, 3 of 6
10 Oct 2024 11:48:22,473 INFO : 89% Done
10 Oct 2024 11:48:22,473 DEBUG: Calculating calibration curve for PFAS (-) PFECA, 4 of 6
10 Oct 2024 11:48:22,510 INFO : 92% Done
10 Oct 2024 11:48:22,510 DEBUG: Calculating calibration curve for PFAS (-) PFESA, 5 of 6
10 Oct 2024 11:48:22,528 INFO : 95% Done
10 Oct 2024 11:48:22,528 DEBUG: Calculating calibration curve for EPA 533, 6 of 6
10 Oct 2024 11:48:22,536 INFO : 98% Done
10 Oct 2024 11:48:22,821 INFO : Done calculating calibration curves.
10 Oct 2024 11:48:22,870 INFO : Creating and populating temp tables for Proportion values
10 Oct 2024 11:48:22,886 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
10 Oct 2024 11:48:23,020 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
10 Oct 2024 11:48:23,158 INFO : Cleaning up temp tables
10 Oct 2024 11:48:23,481 INFO : Completed import of Skyline document from MOBIE Quant Oct 2024_2024-10-09_13-20-22.sky.zip
10 Oct 2024 11:48:23,484 INFO : 100% Done
10 Oct 2024 11:48:23,488 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2024/UNC%20Baker%20Lab%20-%206560%20and%20MOBIE%20Assessment/@files/export/xar/experiments_and_runs.xar.exploded/Run225456/MOBIE%20Quant%20Oct%202024_2024-10-09_13-20-22.sky.zip into the system
10 Oct 2024 11:48:23,495 INFO : Done importing xar
10 Oct 2024 11:48:23,496 INFO : Loading pages and webpart properties
10 Oct 2024 11:48:23,563 INFO : Done importing 3 page(s) with 5 webpart(s)
10 Oct 2024 11:48:23,564 INFO : Loading File Browser config
10 Oct 2024 11:48:23,564 INFO : Done importing File Browser config
10 Oct 2024 11:48:23,565 INFO : Starting Sample Status Data import
10 Oct 2024 11:48:23,565 INFO : No sample types XAR file to process.
10 Oct 2024 11:48:23,565 INFO : Finished importing Sample Status Data
10 Oct 2024 11:48:23,570 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
10 Oct 2024 11:48:23,572 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
10 Oct 2024 11:48:23,572 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
10 Oct 2024 11:48:23,573 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
10 Oct 2024 11:48:23,573 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
10 Oct 2024 11:48:23,573 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
10 Oct 2024 11:48:23,575 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
10 Oct 2024 11:48:23,580 INFO : Moving files to folder /Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment and creating symlinks
10 Oct 2024 11:48:23,582 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/6560 and MOBIE Assessment/@files/6560 Quant Oct 2024_2024-10-09_13-18-13.sky.zip to /data/labkey/files/Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment/@files/6560 Quant Oct 2024_2024-10-09_13-18-13.sky.zip
10 Oct 2024 11:48:23,584 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/6560 and MOBIE Assessment/@files/6560 Quant Oct 2024_2024-10-09_13-18-13.sky.zip targeting /data/labkey/files/Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment/@files/6560 Quant Oct 2024_2024-10-09_13-18-13.sky.zip
10 Oct 2024 11:48:23,585 DEBUG: Directory created: /data/labkey/files/Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment/@files/RawFiles
10 Oct 2024 11:48:23,586 DEBUG: Directory created: /data/labkey/files/Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment/@files/6560 Quant Oct 2024_2024-10-09_13-18-13
10 Oct 2024 11:48:23,587 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/6560 and MOBIE Assessment/@files/6560 Quant Oct 2024_2024-10-09_13-18-13/6560 Quant Oct 2024.sky to /data/labkey/files/Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment/@files/6560 Quant Oct 2024_2024-10-09_13-18-13/6560 Quant Oct 2024.sky
10 Oct 2024 11:48:23,588 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/6560 and MOBIE Assessment/@files/6560 Quant Oct 2024_2024-10-09_13-18-13/6560 Quant Oct 2024.sky targeting /data/labkey/files/Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment/@files/6560 Quant Oct 2024_2024-10-09_13-18-13/6560 Quant Oct 2024.sky
10 Oct 2024 11:48:23,589 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/6560 and MOBIE Assessment/@files/6560 Quant Oct 2024_2024-10-09_13-18-13/6560 Quant Oct 2024.skyd to /data/labkey/files/Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment/@files/6560 Quant Oct 2024_2024-10-09_13-18-13/6560 Quant Oct 2024.skyd
10 Oct 2024 11:48:23,590 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/6560 and MOBIE Assessment/@files/6560 Quant Oct 2024_2024-10-09_13-18-13/6560 Quant Oct 2024.skyd targeting /data/labkey/files/Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment/@files/6560 Quant Oct 2024_2024-10-09_13-18-13/6560 Quant Oct 2024.skyd
10 Oct 2024 11:48:23,591 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/6560 and MOBIE Assessment/@files/6560 Quant Oct 2024_2024-10-09_13-18-13/6560 Quant Oct 2024.sky.view to /data/labkey/files/Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment/@files/6560 Quant Oct 2024_2024-10-09_13-18-13/6560 Quant Oct 2024.sky.view
10 Oct 2024 11:48:23,592 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/6560 and MOBIE Assessment/@files/6560 Quant Oct 2024_2024-10-09_13-18-13/6560 Quant Oct 2024.sky.view targeting /data/labkey/files/Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment/@files/6560 Quant Oct 2024_2024-10-09_13-18-13/6560 Quant Oct 2024.sky.view
10 Oct 2024 11:48:23,593 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/6560 and MOBIE Assessment/@files/6560 Quant Oct 2024_2024-10-09_13-18-13/6560 Quant Oct 2024.skyl to /data/labkey/files/Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment/@files/6560 Quant Oct 2024_2024-10-09_13-18-13/6560 Quant Oct 2024.skyl
10 Oct 2024 11:48:23,594 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/6560 and MOBIE Assessment/@files/6560 Quant Oct 2024_2024-10-09_13-18-13/6560 Quant Oct 2024.skyl targeting /data/labkey/files/Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment/@files/6560 Quant Oct 2024_2024-10-09_13-18-13/6560 Quant Oct 2024.skyl
10 Oct 2024 11:48:23,595 DEBUG: Directory created: /data/labkey/files/Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment/@files/MOBIE Quant Oct 2024_2024-10-09_13-20-22
10 Oct 2024 11:48:23,596 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/6560 and MOBIE Assessment/@files/MOBIE Quant Oct 2024_2024-10-09_13-20-22/MOBIE Quant Oct 2024.sky to /data/labkey/files/Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment/@files/MOBIE Quant Oct 2024_2024-10-09_13-20-22/MOBIE Quant Oct 2024.sky
10 Oct 2024 11:48:23,597 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/6560 and MOBIE Assessment/@files/MOBIE Quant Oct 2024_2024-10-09_13-20-22/MOBIE Quant Oct 2024.sky targeting /data/labkey/files/Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment/@files/MOBIE Quant Oct 2024_2024-10-09_13-20-22/MOBIE Quant Oct 2024.sky
10 Oct 2024 11:48:23,598 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/6560 and MOBIE Assessment/@files/MOBIE Quant Oct 2024_2024-10-09_13-20-22/MOBIE Quant Oct 2024.skyl to /data/labkey/files/Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment/@files/MOBIE Quant Oct 2024_2024-10-09_13-20-22/MOBIE Quant Oct 2024.skyl
10 Oct 2024 11:48:23,599 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/6560 and MOBIE Assessment/@files/MOBIE Quant Oct 2024_2024-10-09_13-20-22/MOBIE Quant Oct 2024.skyl targeting /data/labkey/files/Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment/@files/MOBIE Quant Oct 2024_2024-10-09_13-20-22/MOBIE Quant Oct 2024.skyl
10 Oct 2024 11:48:23,600 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/6560 and MOBIE Assessment/@files/MOBIE Quant Oct 2024_2024-10-09_13-20-22/MOBIE Quant Oct 2024.sky.view to /data/labkey/files/Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment/@files/MOBIE Quant Oct 2024_2024-10-09_13-20-22/MOBIE Quant Oct 2024.sky.view
10 Oct 2024 11:48:23,601 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/6560 and MOBIE Assessment/@files/MOBIE Quant Oct 2024_2024-10-09_13-20-22/MOBIE Quant Oct 2024.sky.view targeting /data/labkey/files/Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment/@files/MOBIE Quant Oct 2024_2024-10-09_13-20-22/MOBIE Quant Oct 2024.sky.view
10 Oct 2024 11:48:23,602 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/6560 and MOBIE Assessment/@files/MOBIE Quant Oct 2024_2024-10-09_13-20-22/MOBIE Quant Oct 2024.skyd to /data/labkey/files/Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment/@files/MOBIE Quant Oct 2024_2024-10-09_13-20-22/MOBIE Quant Oct 2024.skyd
10 Oct 2024 11:48:23,603 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/6560 and MOBIE Assessment/@files/MOBIE Quant Oct 2024_2024-10-09_13-20-22/MOBIE Quant Oct 2024.skyd targeting /data/labkey/files/Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment/@files/MOBIE Quant Oct 2024_2024-10-09_13-20-22/MOBIE Quant Oct 2024.skyd
10 Oct 2024 11:48:23,604 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/6560 and MOBIE Assessment/@files/MOBIE Quant Oct 2024_2024-10-09_13-20-22/Sept 28 Hot Source CCS.imsdb to /data/labkey/files/Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment/@files/MOBIE Quant Oct 2024_2024-10-09_13-20-22/Sept 28 Hot Source CCS.imsdb
10 Oct 2024 11:48:23,605 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/6560 and MOBIE Assessment/@files/MOBIE Quant Oct 2024_2024-10-09_13-20-22/Sept 28 Hot Source CCS.imsdb targeting /data/labkey/files/Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment/@files/MOBIE Quant Oct 2024_2024-10-09_13-20-22/Sept 28 Hot Source CCS.imsdb
10 Oct 2024 11:48:23,606 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/6560 and MOBIE Assessment/@files/MOBIE Quant Oct 2024_2024-10-09_13-20-22.sky.zip to /data/labkey/files/Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment/@files/MOBIE Quant Oct 2024_2024-10-09_13-20-22.sky.zip
10 Oct 2024 11:48:23,607 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/6560 and MOBIE Assessment/@files/MOBIE Quant Oct 2024_2024-10-09_13-20-22.sky.zip targeting /data/labkey/files/Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment/@files/MOBIE Quant Oct 2024_2024-10-09_13-20-22.sky.zip
10 Oct 2024 11:48:23,608 INFO : Aligning data files urls in folder: /Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment
10 Oct 2024 11:48:23,609 DEBUG: Setting filePathRoot on copied run: 6560 Quant Oct 2024_2024-10-09_13-18-13.sky.zip to: /data/labkey/files/Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment/@files
10 Oct 2024 11:48:23,612 DEBUG: Setting dataFileUri on copied data: 6560 Quant Oct 2024.skyd to: /data/labkey/files/Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment/@files/6560 Quant Oct 2024_2024-10-09_13-18-13/6560 Quant Oct 2024.skyd
10 Oct 2024 11:48:23,613 DEBUG: Setting dataFileUri on copied data: 6560 Quant Oct 2024_2024-10-09_13-18-13.sky.zip to: /data/labkey/files/Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment/@files/6560 Quant Oct 2024_2024-10-09_13-18-13.sky.zip
10 Oct 2024 11:48:23,615 DEBUG: Setting filePathRoot on copied run: MOBIE Quant Oct 2024_2024-10-09_13-20-22.sky.zip to: /data/labkey/files/Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment/@files
10 Oct 2024 11:48:23,616 DEBUG: Setting dataFileUri on copied data: MOBIE Quant Oct 2024.skyd to: /data/labkey/files/Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment/@files/MOBIE Quant Oct 2024_2024-10-09_13-20-22/MOBIE Quant Oct 2024.skyd
10 Oct 2024 11:48:23,618 DEBUG: Setting dataFileUri on copied data: MOBIE Quant Oct 2024_2024-10-09_13-20-22.sky.zip to: /data/labkey/files/Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment/@files/MOBIE Quant Oct 2024_2024-10-09_13-20-22.sky.zip
10 Oct 2024 11:48:23,618 INFO : Importing files metadata.
10 Oct 2024 11:48:23,618 DEBUG: [/Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment] Reading files metadata from /data/labkey/files/Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment/@files/export
10 Oct 2024 11:48:23,619 INFO :
10 Oct 2024 11:48:23,619 INFO : Experiment import completed successfully.
10 Oct 2024 11:48:23,619 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
10 Oct 2024 11:48:23,640 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
10 Oct 2024 11:48:23,640 INFO :
10 Oct 2024 11:48:23,640 INFO : Checking for library folders.
10 Oct 2024 11:48:23,641 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
10 Oct 2024 11:48:23,658 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
10 Oct 2024 11:48:23,658 INFO :
10 Oct 2024 11:48:23,658 INFO : Finishing up experiment copy.
10 Oct 2024 11:48:23,659 INFO : Updating TargetedMS experiment entry in target folder /Panorama Public/2024/UNC Baker Lab - 6560 and MOBIE Assessment
10 Oct 2024 11:48:23,660 INFO : Setting version on new experiment to 1
10 Oct 2024 11:48:23,662 INFO : Updating permanent link to point to the new copy of the data.
10 Oct 2024 11:48:23,686 INFO : Removing copy permissions given to Panorama Public
10 Oct 2024 11:48:23,692 INFO : Adding read permissions to all users that are folder admins in the source folder.
10 Oct 2024 11:48:23,693 INFO : Assigning ReaderRole to jndodds@unc.edu
10 Oct 2024 11:48:23,693 INFO : Assigning ReaderRole to rlberes@unc.edu
10 Oct 2024 11:48:23,693 INFO : Assigning ReaderRole to akstewar@ncsu.edu
10 Oct 2024 11:48:23,693 INFO : Assigning ReaderRole to mrfoster@ncsu.edu
10 Oct 2024 11:48:23,693 INFO : Assigning ReaderRole to guozhi@unc.edu
10 Oct 2024 11:48:23,693 INFO : Assigning ReaderRole to erinmsb@unc.edu
10 Oct 2024 11:48:23,693 INFO : Assigning ReaderRole to melanie.odenkirk@colostate.edu
10 Oct 2024 11:48:23,693 INFO : Assigning ReaderRole to kikirkwo@ncsu.edu
10 Oct 2024 11:48:23,693 INFO : Assigning ReaderRole to aboatman@unc.edu
10 Oct 2024 11:48:23,693 INFO : Assigning PanoramaPublicSubmitterRole to jndodds@unc.edu
10 Oct 2024 11:48:23,693 INFO : Assigning PanoramaPublicSubmitterRole to erinmsb@unc.edu
10 Oct 2024 11:48:23,701 INFO : User jndodds@unc.edu is already a member of group Panorama Public Submitters
10 Oct 2024 11:48:23,702 INFO : User erinmsb@unc.edu is already a member of group Panorama Public Submitters
10 Oct 2024 11:48:23,702 INFO : Updating the 'Raw Data' tab configuration
10 Oct 2024 11:48:23,703 INFO : Creating a reviewer account.
10 Oct 2024 11:48:23,775 INFO : Created reviewer with email: panorama+reviewer296@proteinms.net
10 Oct 2024 11:48:23,775 INFO : Generating password.
10 Oct 2024 11:48:23,914 INFO : Set reviewer password successfully.
10 Oct 2024 11:48:23,919 INFO : Adding user panorama+reviewer296@proteinms.net to group Reviewers
10 Oct 2024 11:48:23,921 INFO : Hiding the Data Pipeline tab.
10 Oct 2024 11:48:23,925 INFO : Updating Submission. Setting copiedExperimentId to 1924
10 Oct 2024 11:48:26,110 INFO : Assigning a DOI.
10 Oct 2024 11:48:27,781 INFO : Assigned DOI: 10.6069/qzq3-we32
10 Oct 2024 11:48:27,905 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'