Copying experiment: Defective pgsA contributes to increased membrane fluidity and cell wall thickening in S. aureus with high-level daptomycin resistance

UGA Hines Lab - Defective pgsA contributes to increased membrane fluidity and cell wall thickening in S. aureus with high-level daptomycin resistance

Job Status

Created: 2024-04-30 20:58:25
Modified: 2024-04-30 20:58:57
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Copying experiment: Defective pgsA contributes to increased membrane fluidity and cell wall thickening in S. aureus with high-level daptomycin resistance
File Path: /data/labkey/files/Panorama Public/2024/UGA Hines Lab - Defective pgsA contributes to increased membrane fluidity and cell wall thickening in S. aureus with high-level daptomycin resistance/@files/Experiment_1894.log
Files: Experiment_1894.log
Completed Runs: 2021_09_17_N315_and_Dap8_isotope_labeled_16_2023-04-13_14-14-56.sky.zip
2021_09_17_N315_and_Dap8_isotope_labeled_15_2023-04-13_14-00-31.sky.zip
2022_01_25_P_N315_and_Dap8_LPG_precursors_2023-04-13_14-50-41.sky.zip
2023_08_31_N_CSH_V_Singh_Strains_PGs_2023-12-04_15-16-51.sky.zip
2023_08_31_N_CSH_V_Singh_Strains_LysylPGs_2023-12-04_15-22-27.sky.zip
2023_08_31_N_CSH_V_Singh_Strains_DGDGs_2023-12-04_15-25-28.sky.zip
2023_10_13_Dap8_PW_V_Singh_PGs_2023-12-04_15-27-38.sky.zip
2023_10_13_Dap8_PW_V_Singh_LysylPGs_2023-12-04_15-28-21.sky.zip
2023_10_13_Dap8_PW_V_Singh_DGDGs_2023-12-04_15-29-42.sky.zip

Log File


30 Apr 2024 20:58:25,119 INFO : Copying experiment "Defective pgsA contributes to increased membrane fluidity and cell wall thickening in S. aureus with high-level daptomycin resistance" from folder /UGA - Hines Lab/Defective pgsA contributes to increased membrane fluidity and cell wall thickening in S. aureus with high-level daptomycin resistance to /Panorama Public/2024/UGA Hines Lab - Defective pgsA contributes to increased membrane fluidity and cell wall thickening in S. aureus with high-level daptomycin resistance
30 Apr 2024 20:58:25,119 INFO : =======================================
30 Apr 2024 20:58:25,164 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
30 Apr 2024 20:58:25,164 INFO :
30 Apr 2024 20:58:25,164 INFO : Exporting experiment.
30 Apr 2024 20:58:34,937 INFO : Exporting files metadata.
30 Apr 2024 20:58:34,941 INFO :
30 Apr 2024 20:58:34,941 INFO : Experiment export completed successfully.
30 Apr 2024 20:58:34,941 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
30 Apr 2024 20:58:34,968 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
30 Apr 2024 20:58:34,968 INFO :
30 Apr 2024 20:58:34,968 INFO : Importing experiment.
30 Apr 2024 20:58:34,971 INFO : Loading folder properties (folder type, settings and active modules)
30 Apr 2024 20:58:35,037 INFO : Done importing folder properties (folder type, settings and active modules)
30 Apr 2024 20:58:35,038 INFO : Loading container specific module properties
30 Apr 2024 20:58:35,042 INFO : Done importing container specific module properties
30 Apr 2024 20:58:35,043 INFO : Loading queries
30 Apr 2024 20:58:35,047 INFO : 1 query imported
30 Apr 2024 20:58:35,047 INFO : Done importing queries
30 Apr 2024 20:58:35,048 INFO : Loading etl definitions
30 Apr 2024 20:58:35,049 INFO : Loading wikis
30 Apr 2024 20:58:35,050 INFO : 0 wikis imported
30 Apr 2024 20:58:35,050 INFO : Done importing wikis
30 Apr 2024 20:58:35,052 INFO : Starting Data Class Importer
30 Apr 2024 20:58:35,052 INFO : No types XAR file to process.
30 Apr 2024 20:58:35,052 INFO : Finished Data Class Importer
30 Apr 2024 20:58:35,053 INFO : Starting to copy files
30 Apr 2024 20:58:35,053 INFO : Copied 0 files
30 Apr 2024 20:58:35,053 INFO : Ensuring exp.data rows exist for imported files
30 Apr 2024 20:58:35,135 INFO : Starting Sample Type Importer
30 Apr 2024 20:58:35,135 INFO : No types XAR file to process.
30 Apr 2024 20:58:35,135 INFO : Finished Sample Type Importer
30 Apr 2024 20:58:35,136 INFO : Loading xar
30 Apr 2024 20:58:36,994 INFO : Starting import from 2021_09_17_N315_and_Dap8_isotope_labeled_15_2023-04-13_14-00-31.sky.zip
30 Apr 2024 20:58:36,997 INFO : Starting to import Skyline document from 2021_09_17_N315_and_Dap8_isotope_labeled_15_2023-04-13_14-00-31.sky.zip
30 Apr 2024 20:58:36,998 INFO : Expanding isotope_PGs.imsdb
30 Apr 2024 20:58:36,998 INFO : Expanding 2021_09_17_N315_and_Dap8_isotope_labeled_15.skyd
30 Apr 2024 20:58:37,213 INFO : Expanding 2021_09_17_N315_and_Dap8_isotope_labeled_15.sky.view
30 Apr 2024 20:58:37,214 INFO : Expanding 2021_09_17_N315_and_Dap8_isotope_labeled_15.sky
30 Apr 2024 20:58:37,219 INFO : Expanding 2021_09_17_N315_and_Dap8_isotope_labeled_15.skyl
30 Apr 2024 20:58:37,226 INFO : 1% Done
30 Apr 2024 20:58:38,008 INFO : Inserting PG
30 Apr 2024 20:58:38,017 INFO : 3% Done
30 Apr 2024 20:58:38,031 INFO : 4% Done
30 Apr 2024 20:58:38,041 INFO : 5% Done
30 Apr 2024 20:58:38,051 INFO : 7% Done
30 Apr 2024 20:58:38,062 INFO : 8% Done
30 Apr 2024 20:58:38,072 INFO : 9% Done
30 Apr 2024 20:58:38,082 INFO : 11% Done
30 Apr 2024 20:58:38,094 INFO : 12% Done
30 Apr 2024 20:58:38,104 INFO : 13% Done
30 Apr 2024 20:58:38,114 INFO : 15% Done
30 Apr 2024 20:58:38,127 INFO : 16% Done
30 Apr 2024 20:58:38,138 INFO : 18% Done
30 Apr 2024 20:58:38,149 INFO : 20% Done
30 Apr 2024 20:58:38,162 INFO : 21% Done
30 Apr 2024 20:58:38,171 INFO : 22% Done
30 Apr 2024 20:58:38,182 INFO : 24% Done
30 Apr 2024 20:58:38,196 INFO : 25% Done
30 Apr 2024 20:58:38,206 INFO : 26% Done
30 Apr 2024 20:58:38,217 INFO : 29% Done
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30 Apr 2024 20:58:38,260 INFO : 35% Done
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30 Apr 2024 20:58:38,290 INFO : 39% Done
30 Apr 2024 20:58:38,303 INFO : 41% Done
30 Apr 2024 20:58:38,318 INFO : 43% Done
30 Apr 2024 20:58:38,332 INFO : 45% Done
30 Apr 2024 20:58:38,343 INFO : 47% Done
30 Apr 2024 20:58:38,356 INFO : 49% Done
30 Apr 2024 20:58:38,372 INFO : 51% Done
30 Apr 2024 20:58:38,389 INFO : 53% Done
30 Apr 2024 20:58:38,403 INFO : 55% Done
30 Apr 2024 20:58:38,417 INFO : 58% Done
30 Apr 2024 20:58:38,434 INFO : 60% Done
30 Apr 2024 20:58:38,447 INFO : 62% Done
30 Apr 2024 20:58:38,462 INFO : 65% Done
30 Apr 2024 20:58:38,481 INFO : 67% Done
30 Apr 2024 20:58:38,498 INFO : 70% Done
30 Apr 2024 20:58:38,513 INFO : 72% Done
30 Apr 2024 20:58:38,531 INFO : 74% Done
30 Apr 2024 20:58:38,550 INFO : 76% Done
30 Apr 2024 20:58:38,566 INFO : 78% Done
30 Apr 2024 20:58:38,584 INFO : 81% Done
30 Apr 2024 20:58:38,602 INFO : 84% Done
30 Apr 2024 20:58:38,620 INFO : 86% Done
30 Apr 2024 20:58:38,637 INFO : 88% Done
30 Apr 2024 20:58:38,651 INFO : 90% Done
30 Apr 2024 20:58:38,666 INFO : 92% Done
30 Apr 2024 20:58:38,679 INFO : 94% Done
30 Apr 2024 20:58:38,693 INFO : 96% Done
30 Apr 2024 20:58:38,707 INFO : 98% Done
30 Apr 2024 20:58:38,724 INFO : Done parsing Skyline document.
30 Apr 2024 20:58:38,761 INFO : Creating and populating temp tables for Proportion values
30 Apr 2024 20:58:38,768 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
30 Apr 2024 20:58:38,794 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
30 Apr 2024 20:58:38,812 INFO : Cleaning up temp tables
30 Apr 2024 20:58:39,113 INFO : Completed import of Skyline document from 2021_09_17_N315_and_Dap8_isotope_labeled_15_2023-04-13_14-00-31.sky.zip
30 Apr 2024 20:58:39,116 INFO : 100% Done
30 Apr 2024 20:58:39,125 INFO : Starting import from 2021_2021_09_17_N315_and_Dap8_isotope_labeled_16_2023-04-13_14-14-56.sky.zip
30 Apr 2024 20:58:39,127 INFO : Starting to import Skyline document from 2021_2021_09_17_N315_and_Dap8_isotope_labeled_16_2023-04-13_14-14-56.sky.zip
30 Apr 2024 20:58:39,128 INFO : Expanding isotope_PGs2.imsdb
30 Apr 2024 20:58:39,129 INFO : Expanding 2021_09_20_inc_N315_and_N315_dap8_FA_16_peak_areas.skyd
30 Apr 2024 20:58:39,317 INFO : Expanding 2021_09_20_inc_N315_and_N315_dap8_FA_16_peak_areas.sky.view
30 Apr 2024 20:58:39,317 INFO : Expanding 2021_09_20_inc_N315_and_N315_dap8_FA_16_peak_areas.sky
30 Apr 2024 20:58:39,322 INFO : Expanding 2021_09_20_inc_N315_and_N315_dap8_FA_16_peak_areas.skyl
30 Apr 2024 20:58:39,329 INFO : 1% Done
30 Apr 2024 20:58:40,250 INFO : Inserting PG
30 Apr 2024 20:58:40,258 INFO : 3% Done
30 Apr 2024 20:58:40,273 INFO : 4% Done
30 Apr 2024 20:58:40,284 INFO : 5% Done
30 Apr 2024 20:58:40,296 INFO : 7% Done
30 Apr 2024 20:58:40,309 INFO : 9% Done
30 Apr 2024 20:58:40,320 INFO : 10% Done
30 Apr 2024 20:58:40,333 INFO : 12% Done
30 Apr 2024 20:58:40,345 INFO : 13% Done
30 Apr 2024 20:58:40,356 INFO : 15% Done
30 Apr 2024 20:58:40,367 INFO : 17% Done
30 Apr 2024 20:58:40,381 INFO : 19% Done
30 Apr 2024 20:58:40,395 INFO : 21% Done
30 Apr 2024 20:58:40,408 INFO : 23% Done
30 Apr 2024 20:58:40,421 INFO : 25% Done
30 Apr 2024 20:58:40,446 INFO : 27% Done
30 Apr 2024 20:58:40,460 INFO : 29% Done
30 Apr 2024 20:58:40,475 INFO : 31% Done
30 Apr 2024 20:58:40,491 INFO : 34% Done
30 Apr 2024 20:58:40,506 INFO : 35% Done
30 Apr 2024 20:58:40,519 INFO : 37% Done
30 Apr 2024 20:58:40,532 INFO : 39% Done
30 Apr 2024 20:58:40,547 INFO : 41% Done
30 Apr 2024 20:58:40,559 INFO : 42% Done
30 Apr 2024 20:58:40,570 INFO : 45% Done
30 Apr 2024 20:58:40,585 INFO : 47% Done
30 Apr 2024 20:58:40,598 INFO : 48% Done
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30 Apr 2024 20:58:40,636 INFO : 53% Done
30 Apr 2024 20:58:40,651 INFO : 56% Done
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30 Apr 2024 20:58:40,719 INFO : 65% Done
30 Apr 2024 20:58:40,734 INFO : 68% Done
30 Apr 2024 20:58:40,754 INFO : 71% Done
30 Apr 2024 20:58:40,771 INFO : 72% Done
30 Apr 2024 20:58:40,785 INFO : 75% Done
30 Apr 2024 20:58:40,805 INFO : 77% Done
30 Apr 2024 20:58:40,822 INFO : 79% Done
30 Apr 2024 20:58:40,837 INFO : 82% Done
30 Apr 2024 20:58:40,857 INFO : 85% Done
30 Apr 2024 20:58:40,874 INFO : 86% Done
30 Apr 2024 20:58:40,887 INFO : 88% Done
30 Apr 2024 20:58:40,902 INFO : 90% Done
30 Apr 2024 20:58:40,917 INFO : 92% Done
30 Apr 2024 20:58:40,931 INFO : 94% Done
30 Apr 2024 20:58:40,945 INFO : 96% Done
30 Apr 2024 20:58:40,959 INFO : 98% Done
30 Apr 2024 20:58:40,975 INFO : Done parsing Skyline document.
30 Apr 2024 20:58:41,252 INFO : Creating and populating temp tables for Proportion values
30 Apr 2024 20:58:41,260 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
30 Apr 2024 20:58:41,286 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
30 Apr 2024 20:58:41,305 INFO : Cleaning up temp tables
30 Apr 2024 20:58:41,593 INFO : Completed import of Skyline document from 2021_2021_09_17_N315_and_Dap8_isotope_labeled_16_2023-04-13_14-14-56.sky.zip
30 Apr 2024 20:58:41,596 INFO : 100% Done
30 Apr 2024 20:58:41,602 INFO : Starting import from 2022_01_25_P_N315_and_Dap8_LPG_precursors_2023-04-13_14-50-41.sky.zip
30 Apr 2024 20:58:41,603 INFO : Starting to import Skyline document from 2022_01_25_P_N315_and_Dap8_LPG_precursors_2023-04-13_14-50-41.sky.zip
30 Apr 2024 20:58:41,604 INFO : Expanding DGDG_ion_mobility.imsdb
30 Apr 2024 20:58:41,605 INFO : Expanding 2022_01_25_P_N315_and_N315_dap8_LPG_new_pH.skyd
30 Apr 2024 20:58:41,718 INFO : Expanding 2022_01_25_P_N315_and_N315_dap8_LPG_new_pH.sky.view
30 Apr 2024 20:58:41,718 INFO : Expanding 2022_01_25_P_N315_and_N315_dap8_LPG_new_pH.sky
30 Apr 2024 20:58:41,719 INFO : Expanding 2022_01_25_P_N315_and_N315_dap8_LPG_new_pH.skyl
30 Apr 2024 20:58:41,725 INFO : 6% Done
30 Apr 2024 20:58:42,592 INFO : 11% Done
30 Apr 2024 20:58:42,592 INFO : Inserting LPG
30 Apr 2024 20:58:42,597 INFO : 15% Done
30 Apr 2024 20:58:42,603 INFO : 19% Done
30 Apr 2024 20:58:42,608 INFO : 25% Done
30 Apr 2024 20:58:42,613 INFO : 29% Done
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30 Apr 2024 20:58:42,623 INFO : 40% Done
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30 Apr 2024 20:58:42,633 INFO : 51% Done
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30 Apr 2024 20:58:42,652 INFO : 70% Done
30 Apr 2024 20:58:42,657 INFO : 74% Done
30 Apr 2024 20:58:42,662 INFO : 80% Done
30 Apr 2024 20:58:42,667 INFO : 84% Done
30 Apr 2024 20:58:42,672 INFO : 88% Done
30 Apr 2024 20:58:42,677 INFO : 95% Done
30 Apr 2024 20:58:42,682 INFO : 98% Done
30 Apr 2024 20:58:42,689 INFO : Done parsing Skyline document.
30 Apr 2024 20:58:42,763 INFO : Creating and populating temp tables for Proportion values
30 Apr 2024 20:58:42,768 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
30 Apr 2024 20:58:42,777 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
30 Apr 2024 20:58:42,784 INFO : Cleaning up temp tables
30 Apr 2024 20:58:43,040 INFO : Completed import of Skyline document from 2022_01_25_P_N315_and_Dap8_LPG_precursors_2023-04-13_14-50-41.sky.zip
30 Apr 2024 20:58:43,042 INFO : 100% Done
30 Apr 2024 20:58:43,047 INFO : Starting import from 2023_08_31_N_CSH_V_Singh_Strains_PGs_2023-12-04_15-16-51.sky.zip
30 Apr 2024 20:58:43,049 INFO : Starting to import Skyline document from 2023_08_31_N_CSH_V_Singh_Strains_PGs_2023-12-04_15-16-51.sky.zip
30 Apr 2024 20:58:43,050 INFO : Expanding V_Singh_PG.imsdb
30 Apr 2024 20:58:43,051 INFO : Expanding 2023_08_31_N_CSH_V_Singh_Strains_PGs.skyd
30 Apr 2024 20:58:43,156 INFO : Expanding 2023_08_31_N_CSH_V_Singh_Strains_PGs.sky.view
30 Apr 2024 20:58:43,157 INFO : Expanding 2023_08_31_N_CSH_V_Singh_Strains_PGs.sky
30 Apr 2024 20:58:43,160 INFO : Expanding 2023_08_31_N_CSH_V_Singh_Strains_PGs.skyl
30 Apr 2024 20:58:43,167 INFO : 1% Done
30 Apr 2024 20:58:44,100 INFO : Inserting PG
30 Apr 2024 20:58:44,114 INFO : 6% Done
30 Apr 2024 20:58:44,145 INFO : 10% Done
30 Apr 2024 20:58:44,174 INFO : 15% Done
30 Apr 2024 20:58:44,203 INFO : 20% Done
30 Apr 2024 20:58:44,233 INFO : 25% Done
30 Apr 2024 20:58:44,262 INFO : 30% Done
30 Apr 2024 20:58:44,294 INFO : 35% Done
30 Apr 2024 20:58:44,326 INFO : 40% Done
30 Apr 2024 20:58:44,359 INFO : 46% Done
30 Apr 2024 20:58:44,393 INFO : 52% Done
30 Apr 2024 20:58:44,428 INFO : 57% Done
30 Apr 2024 20:58:44,465 INFO : 63% Done
30 Apr 2024 20:58:44,502 INFO : 70% Done
30 Apr 2024 20:58:44,543 INFO : 75% Done
30 Apr 2024 20:58:44,582 INFO : 81% Done
30 Apr 2024 20:58:44,619 INFO : 87% Done
30 Apr 2024 20:58:44,655 INFO : 92% Done
30 Apr 2024 20:58:44,690 INFO : 98% Done
30 Apr 2024 20:58:44,718 INFO : Done parsing Skyline document.
30 Apr 2024 20:58:44,814 INFO : Creating and populating temp tables for Proportion values
30 Apr 2024 20:58:44,820 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
30 Apr 2024 20:58:44,827 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
30 Apr 2024 20:58:44,831 INFO : Cleaning up temp tables
30 Apr 2024 20:58:45,107 INFO : Completed import of Skyline document from 2023_08_31_N_CSH_V_Singh_Strains_PGs_2023-12-04_15-16-51.sky.zip
30 Apr 2024 20:58:45,110 INFO : 100% Done
30 Apr 2024 20:58:45,116 INFO : Starting import from 2023_08_31_N_CSH_V_Singh_Strains_LysylPGs_2023-12-04_15-22-27.sky.zip
30 Apr 2024 20:58:45,118 INFO : Starting to import Skyline document from 2023_08_31_N_CSH_V_Singh_Strains_LysylPGs_2023-12-04_15-22-27.sky.zip
30 Apr 2024 20:58:45,119 INFO : Expanding V_Singh_LysylPG.imsdb
30 Apr 2024 20:58:45,119 INFO : Expanding 2023_08_31_N_CSH_V_Singh_Strains_LysylPGs.skyd
30 Apr 2024 20:58:45,191 INFO : Expanding 2023_08_31_N_CSH_V_Singh_Strains_LysylPGs.sky.view
30 Apr 2024 20:58:45,192 INFO : Expanding 2023_08_31_N_CSH_V_Singh_Strains_LysylPGs.sky
30 Apr 2024 20:58:45,194 INFO : Expanding 2023_08_31_N_CSH_V_Singh_Strains_LysylPGs.skyl
30 Apr 2024 20:58:45,200 INFO : 3% Done
30 Apr 2024 20:58:46,223 INFO : Inserting LPG
30 Apr 2024 20:58:46,234 INFO : 9% Done
30 Apr 2024 20:58:46,248 INFO : 14% Done
30 Apr 2024 20:58:46,259 INFO : 21% Done
30 Apr 2024 20:58:46,271 INFO : 25% Done
30 Apr 2024 20:58:46,282 INFO : 30% Done
30 Apr 2024 20:58:46,294 INFO : 36% Done
30 Apr 2024 20:58:46,305 INFO : 41% Done
30 Apr 2024 20:58:46,317 INFO : 46% Done
30 Apr 2024 20:58:46,329 INFO : 51% Done
30 Apr 2024 20:58:46,340 INFO : 56% Done
30 Apr 2024 20:58:46,351 INFO : 62% Done
30 Apr 2024 20:58:46,363 INFO : 67% Done
30 Apr 2024 20:58:46,374 INFO : 72% Done
30 Apr 2024 20:58:46,387 INFO : 76% Done
30 Apr 2024 20:58:46,399 INFO : 82% Done
30 Apr 2024 20:58:46,410 INFO : 88% Done
30 Apr 2024 20:58:46,422 INFO : 93% Done
30 Apr 2024 20:58:46,434 INFO : 98% Done
30 Apr 2024 20:58:46,445 INFO : Done parsing Skyline document.
30 Apr 2024 20:58:46,530 INFO : Creating and populating temp tables for Proportion values
30 Apr 2024 20:58:46,537 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
30 Apr 2024 20:58:46,544 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
30 Apr 2024 20:58:46,549 INFO : Cleaning up temp tables
30 Apr 2024 20:58:46,840 INFO : Completed import of Skyline document from 2023_08_31_N_CSH_V_Singh_Strains_LysylPGs_2023-12-04_15-22-27.sky.zip
30 Apr 2024 20:58:46,842 INFO : 100% Done
30 Apr 2024 20:58:46,848 INFO : Starting import from 2023_08_31_N_CSH_V_Singh_Strains_DGDGs_2023-12-04_15-25-28.sky.zip
30 Apr 2024 20:58:46,850 INFO : Starting to import Skyline document from 2023_08_31_N_CSH_V_Singh_Strains_DGDGs_2023-12-04_15-25-28.sky.zip
30 Apr 2024 20:58:46,850 INFO : Expanding V_Singh_DGDG.imsdb
30 Apr 2024 20:58:46,851 INFO : Expanding 2023_08_31_N_CSH_V_Singh_Strains_DGDGs.skyd
30 Apr 2024 20:58:46,904 INFO : Expanding 2023_08_31_N_CSH_V_Singh_Strains_DGDGs.sky.view
30 Apr 2024 20:58:46,905 INFO : Expanding 2023_08_31_N_CSH_V_Singh_Strains_DGDGs.sky
30 Apr 2024 20:58:46,909 INFO : Expanding 2023_08_31_N_CSH_V_Singh_Strains_DGDGs.skyl
30 Apr 2024 20:58:46,914 INFO : 1% Done
30 Apr 2024 20:58:48,001 INFO : Inserting DGDG
30 Apr 2024 20:58:48,013 INFO : 6% Done
30 Apr 2024 20:58:48,043 INFO : 11% Done
30 Apr 2024 20:58:48,070 INFO : 16% Done
30 Apr 2024 20:58:48,099 INFO : 20% Done
30 Apr 2024 20:58:48,128 INFO : 25% Done
30 Apr 2024 20:58:48,157 INFO : 29% Done
30 Apr 2024 20:58:48,187 INFO : 35% Done
30 Apr 2024 20:58:48,217 INFO : 41% Done
30 Apr 2024 20:58:48,249 INFO : 46% Done
30 Apr 2024 20:58:48,280 INFO : 52% Done
30 Apr 2024 20:58:48,313 INFO : 58% Done
30 Apr 2024 20:58:48,346 INFO : 64% Done
30 Apr 2024 20:58:48,380 INFO : 70% Done
30 Apr 2024 20:58:48,417 INFO : 75% Done
30 Apr 2024 20:58:48,454 INFO : 81% Done
30 Apr 2024 20:58:48,490 INFO : 87% Done
30 Apr 2024 20:58:48,523 INFO : 93% Done
30 Apr 2024 20:58:48,558 INFO : 98% Done
30 Apr 2024 20:58:48,586 INFO : Done parsing Skyline document.
30 Apr 2024 20:58:48,671 INFO : Creating and populating temp tables for Proportion values
30 Apr 2024 20:58:48,677 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
30 Apr 2024 20:58:48,683 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
30 Apr 2024 20:58:48,688 INFO : Cleaning up temp tables
30 Apr 2024 20:58:48,689 INFO : Completed import of Skyline document from 2023_08_31_N_CSH_V_Singh_Strains_DGDGs_2023-12-04_15-25-28.sky.zip
30 Apr 2024 20:58:48,693 INFO : 100% Done
30 Apr 2024 20:58:48,699 INFO : Starting import from 2023_10_13_Dap8_PW_V_Singh_PGs_2023-12-04_15-27-38.sky.zip
30 Apr 2024 20:58:48,700 INFO : Starting to import Skyline document from 2023_10_13_Dap8_PW_V_Singh_PGs_2023-12-04_15-27-38.sky.zip
30 Apr 2024 20:58:48,701 INFO : Expanding V_Singh_PG.imsdb
30 Apr 2024 20:58:48,702 INFO : Expanding 2023_10_13_Dap8_PW_V_Singh_PGs.skyd
30 Apr 2024 20:58:48,785 INFO : Expanding 2023_10_13_Dap8_PW_V_Singh_PGs.sky.view
30 Apr 2024 20:58:48,786 INFO : Expanding 2023_10_13_Dap8_PW_V_Singh_PGs.sky
30 Apr 2024 20:58:48,791 INFO : Expanding 2023_10_13_Dap8_PW_V_Singh_PGs.skyl
30 Apr 2024 20:58:48,796 INFO : 1% Done
30 Apr 2024 20:58:49,984 INFO : Inserting PG
30 Apr 2024 20:58:49,997 INFO : 5% Done
30 Apr 2024 20:58:50,028 INFO : 10% Done
30 Apr 2024 20:58:50,055 INFO : 15% Done
30 Apr 2024 20:58:50,081 INFO : 20% Done
30 Apr 2024 20:58:50,108 INFO : 25% Done
30 Apr 2024 20:58:50,137 INFO : 29% Done
30 Apr 2024 20:58:50,167 INFO : 35% Done
30 Apr 2024 20:58:50,197 INFO : 40% Done
30 Apr 2024 20:58:50,227 INFO : 46% Done
30 Apr 2024 20:58:50,257 INFO : 51% Done
30 Apr 2024 20:58:50,288 INFO : 56% Done
30 Apr 2024 20:58:50,319 INFO : 62% Done
30 Apr 2024 20:58:50,353 INFO : 68% Done
30 Apr 2024 20:58:50,389 INFO : 74% Done
30 Apr 2024 20:58:50,428 INFO : 80% Done
30 Apr 2024 20:58:50,466 INFO : 86% Done
30 Apr 2024 20:58:50,501 INFO : 92% Done
30 Apr 2024 20:58:50,535 INFO : 98% Done
30 Apr 2024 20:58:50,565 INFO : Done parsing Skyline document.
30 Apr 2024 20:58:50,591 INFO : Creating and populating temp tables for Proportion values
30 Apr 2024 20:58:50,597 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
30 Apr 2024 20:58:50,603 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
30 Apr 2024 20:58:50,608 INFO : Cleaning up temp tables
30 Apr 2024 20:58:50,609 INFO : Completed import of Skyline document from 2023_10_13_Dap8_PW_V_Singh_PGs_2023-12-04_15-27-38.sky.zip
30 Apr 2024 20:58:50,613 INFO : 100% Done
30 Apr 2024 20:58:50,619 INFO : Starting import from 2023_10_13_Dap8_PW_V_Singh_LysylPGs_2023-12-04_15-28-21.sky.zip
30 Apr 2024 20:58:50,621 INFO : Starting to import Skyline document from 2023_10_13_Dap8_PW_V_Singh_LysylPGs_2023-12-04_15-28-21.sky.zip
30 Apr 2024 20:58:50,622 INFO : Expanding V_Singh_LysylPG.imsdb
30 Apr 2024 20:58:50,622 INFO : Expanding 2023_10_13_Dap8_PW_V_Singh_LysylPGs.skyd
30 Apr 2024 20:58:50,709 INFO : Expanding 2023_10_13_Dap8_PW_V_Singh_LysylPGs.sky.view
30 Apr 2024 20:58:50,710 INFO : Expanding 2023_10_13_Dap8_PW_V_Singh_LysylPGs.sky
30 Apr 2024 20:58:50,712 INFO : Expanding 2023_10_13_Dap8_PW_V_Singh_LysylPGs.skyl
30 Apr 2024 20:58:50,717 INFO : 2% Done
30 Apr 2024 20:58:51,951 INFO : Inserting LPG
30 Apr 2024 20:58:51,958 INFO : 4% Done
30 Apr 2024 20:58:51,963 INFO : 8% Done
30 Apr 2024 20:58:51,973 INFO : 14% Done
30 Apr 2024 20:58:51,982 INFO : 19% Done
30 Apr 2024 20:58:51,991 INFO : 25% Done
30 Apr 2024 20:58:52,000 INFO : 29% Done
30 Apr 2024 20:58:52,009 INFO : 34% Done
30 Apr 2024 20:58:52,018 INFO : 40% Done
30 Apr 2024 20:58:52,027 INFO : 46% Done
30 Apr 2024 20:58:52,035 INFO : 50% Done
30 Apr 2024 20:58:52,044 INFO : 56% Done
30 Apr 2024 20:58:52,052 INFO : 61% Done
30 Apr 2024 20:58:52,061 INFO : 66% Done
30 Apr 2024 20:58:52,070 INFO : 72% Done
30 Apr 2024 20:58:52,079 INFO : 77% Done
30 Apr 2024 20:58:52,088 INFO : 82% Done
30 Apr 2024 20:58:52,097 INFO : 88% Done
30 Apr 2024 20:58:52,106 INFO : 93% Done
30 Apr 2024 20:58:52,115 INFO : 98% Done
30 Apr 2024 20:58:52,124 INFO : Done parsing Skyline document.
30 Apr 2024 20:58:52,148 INFO : Creating and populating temp tables for Proportion values
30 Apr 2024 20:58:52,153 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
30 Apr 2024 20:58:52,161 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
30 Apr 2024 20:58:52,169 INFO : Cleaning up temp tables
30 Apr 2024 20:58:52,170 INFO : Completed import of Skyline document from 2023_10_13_Dap8_PW_V_Singh_LysylPGs_2023-12-04_15-28-21.sky.zip
30 Apr 2024 20:58:52,174 INFO : 100% Done
30 Apr 2024 20:58:52,180 INFO : Starting import from 2023_10_13_Dap8_PW_V_Singh_DGDGs_2023-12-04_15-29-42.sky.zip
30 Apr 2024 20:58:52,181 INFO : Starting to import Skyline document from 2023_10_13_Dap8_PW_V_Singh_DGDGs_2023-12-04_15-29-42.sky.zip
30 Apr 2024 20:58:52,182 INFO : Expanding V_Singh_DGDG.imsdb
30 Apr 2024 20:58:52,183 INFO : Expanding 2023_10_13_Dap8_PW_V_Singh_DGDGs.skyd
30 Apr 2024 20:58:52,220 INFO : Expanding 2023_10_13_Dap8_PW_V_Singh_DGDGs.sky.view
30 Apr 2024 20:58:52,220 INFO : Expanding 2023_10_13_Dap8_PW_V_Singh_DGDGs.sky
30 Apr 2024 20:58:52,225 INFO : Expanding 2023_10_13_Dap8_PW_V_Singh_DGDGs.skyl
30 Apr 2024 20:58:52,229 INFO : 1% Done
30 Apr 2024 20:58:53,517 INFO : Inserting DGDG
30 Apr 2024 20:58:53,528 INFO : 6% Done
30 Apr 2024 20:58:53,551 INFO : 11% Done
30 Apr 2024 20:58:53,571 INFO : 15% Done
30 Apr 2024 20:58:53,593 INFO : 20% Done
30 Apr 2024 20:58:53,615 INFO : 25% Done
30 Apr 2024 20:58:53,637 INFO : 30% Done
30 Apr 2024 20:58:53,660 INFO : 35% Done
30 Apr 2024 20:58:53,684 INFO : 41% Done
30 Apr 2024 20:58:53,707 INFO : 47% Done
30 Apr 2024 20:58:53,731 INFO : 52% Done
30 Apr 2024 20:58:53,755 INFO : 58% Done
30 Apr 2024 20:58:53,781 INFO : 64% Done
30 Apr 2024 20:58:53,807 INFO : 70% Done
30 Apr 2024 20:58:53,836 INFO : 75% Done
30 Apr 2024 20:58:53,866 INFO : 81% Done
30 Apr 2024 20:58:53,893 INFO : 87% Done
30 Apr 2024 20:58:53,921 INFO : 93% Done
30 Apr 2024 20:58:53,948 INFO : 98% Done
30 Apr 2024 20:58:53,972 INFO : Done parsing Skyline document.
30 Apr 2024 20:58:53,998 INFO : Creating and populating temp tables for Proportion values
30 Apr 2024 20:58:54,003 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
30 Apr 2024 20:58:54,012 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
30 Apr 2024 20:58:54,018 INFO : Cleaning up temp tables
30 Apr 2024 20:58:54,332 INFO : Completed import of Skyline document from 2023_10_13_Dap8_PW_V_Singh_DGDGs_2023-12-04_15-29-42.sky.zip
30 Apr 2024 20:58:54,334 INFO : 100% Done
30 Apr 2024 20:58:54,357 INFO : Done importing xar
30 Apr 2024 20:58:54,358 INFO : Loading pages and webpart properties
30 Apr 2024 20:58:54,419 INFO : Done importing 3 page(s) with 5 webpart(s)
30 Apr 2024 20:58:54,419 INFO : Loading File Browser config
30 Apr 2024 20:58:54,419 INFO : Done importing File Browser config
30 Apr 2024 20:58:54,420 INFO : Starting Sample Status Data import
30 Apr 2024 20:58:54,420 INFO : No sample types XAR file to process.
30 Apr 2024 20:58:54,420 INFO : Finished importing Sample Status Data
30 Apr 2024 20:58:54,424 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
30 Apr 2024 20:58:54,426 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
30 Apr 2024 20:58:54,427 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
30 Apr 2024 20:58:54,427 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
30 Apr 2024 20:58:54,427 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
30 Apr 2024 20:58:54,427 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
30 Apr 2024 20:58:54,429 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
30 Apr 2024 20:58:54,435 INFO : Moving files to folder /Panorama Public/2024/UGA Hines Lab - Defective pgsA contributes to increased membrane fluidity and cell wall thickening in S. aureus with high-level daptomycin resistance and creating symlinks
30 Apr 2024 20:58:54,574 INFO : Aligning data files urls in folder: /Panorama Public/2024/UGA Hines Lab - Defective pgsA contributes to increased membrane fluidity and cell wall thickening in S. aureus with high-level daptomycin resistance
30 Apr 2024 20:58:54,613 INFO : Importing files metadata.
30 Apr 2024 20:58:54,615 INFO :
30 Apr 2024 20:58:54,615 INFO : Experiment import completed successfully.
30 Apr 2024 20:58:54,615 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
30 Apr 2024 20:58:54,635 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
30 Apr 2024 20:58:54,636 INFO :
30 Apr 2024 20:58:54,636 INFO : Checking for library folders.
30 Apr 2024 20:58:54,637 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
30 Apr 2024 20:58:54,652 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
30 Apr 2024 20:58:54,652 INFO :
30 Apr 2024 20:58:54,652 INFO : Finishing up experiment copy.
30 Apr 2024 20:58:54,653 INFO : Updating TargetedMS experiment entry in target folder /Panorama Public/2024/UGA Hines Lab - Defective pgsA contributes to increased membrane fluidity and cell wall thickening in S. aureus with high-level daptomycin resistance
30 Apr 2024 20:58:54,654 INFO : Setting version on new experiment to 1
30 Apr 2024 20:58:54,656 INFO : Updating permanent link to point to the new copy of the data.
30 Apr 2024 20:58:54,678 INFO : Removing copy permissions given to Panorama Public
30 Apr 2024 20:58:54,680 INFO : Adding read permissions to all users that are folder admins in the source folder.
30 Apr 2024 20:58:54,680 INFO : Assigning ReaderRole to hines.lab.uga@gmail.com
30 Apr 2024 20:58:54,680 INFO : Assigning PanoramaPublicSubmitterRole to hines.lab.uga@gmail.com
30 Apr 2024 20:58:54,685 INFO : Adding user hines.lab.uga@gmail.com to group Panorama Public Submitters
30 Apr 2024 20:58:54,687 INFO : Updating the 'Raw Data' tab configuration
30 Apr 2024 20:58:54,687 INFO : Making folder public.
30 Apr 2024 20:58:54,689 INFO : Hiding the Data Pipeline tab.
30 Apr 2024 20:58:54,693 INFO : Updating Submission. Setting copiedExperimentId to 1806
30 Apr 2024 20:58:57,087 INFO : Assigning a DOI.
30 Apr 2024 20:58:57,918 INFO : Assigned DOI: 10.6069/g7hx-7272
30 Apr 2024 20:58:57,968 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'