Copying experiment: Targeted proteomics of plasma from de novo Parkinson's disease

UCL ICH Translational Mass Spec Group - DNP_Plasma_Targeted_MS

Job Status

Created: 2024-01-15 23:30:40
Modified: 2024-01-15 23:31:15
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Copying experiment: Targeted proteomics of plasma from de novo Parkinson's disease
File Path: /data/labkey/files/Panorama Public/2024/UCL ICH Translational Mass Spec Group - DNP_Plasma_Targeted_MS/@files/Experiment_1682.log
Files: Experiment_1682.log
Completed Runs: Initial_Targeted_Proteomics
Paired_CSF_Plasma_Serum
New_iRBD

Log File


15 Jan 2024 23:30:40,693 INFO : Copying experiment "Targeted proteomics of plasma from de novo Parkinson's disease" from folder /UCL ICH - Translational Mass Spec Group/DNP_Plasma_Targeted_MS to /Panorama Public/2024/UCL ICH Translational Mass Spec Group - DNP_Plasma_Targeted_MS
15 Jan 2024 23:30:40,693 INFO : =======================================
15 Jan 2024 23:30:40,735 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
15 Jan 2024 23:30:40,735 INFO :
15 Jan 2024 23:30:40,735 INFO : Exporting experiment.
15 Jan 2024 23:30:49,796 INFO : Exporting files metadata.
15 Jan 2024 23:30:50,309 INFO :
15 Jan 2024 23:30:50,309 INFO : Experiment export completed successfully.
15 Jan 2024 23:30:50,309 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
15 Jan 2024 23:30:50,330 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
15 Jan 2024 23:30:50,330 INFO :
15 Jan 2024 23:30:50,330 INFO : Importing experiment.
15 Jan 2024 23:30:50,333 INFO : Loading folder properties (folder type, settings and active modules)
15 Jan 2024 23:30:50,394 INFO : Done importing folder properties (folder type, settings and active modules)
15 Jan 2024 23:30:50,395 INFO : Loading container specific module properties
15 Jan 2024 23:30:50,398 INFO : Done importing container specific module properties
15 Jan 2024 23:30:50,399 INFO : Loading etl definitions
15 Jan 2024 23:30:50,400 INFO : Loading wikis
15 Jan 2024 23:30:50,402 INFO : 0 wikis imported
15 Jan 2024 23:30:50,402 INFO : Done importing wikis
15 Jan 2024 23:30:50,404 INFO : Starting Data Class Importer
15 Jan 2024 23:30:50,404 INFO : No types XAR file to process.
15 Jan 2024 23:30:50,404 INFO : Finished Data Class Importer
15 Jan 2024 23:30:50,404 INFO : Starting to copy files
15 Jan 2024 23:30:50,404 INFO : Copied 0 files
15 Jan 2024 23:30:50,404 INFO : Ensuring exp.data rows exist for imported files
15 Jan 2024 23:30:50,462 INFO : Starting Sample Type Importer
15 Jan 2024 23:30:50,462 INFO : No types XAR file to process.
15 Jan 2024 23:30:50,462 INFO : Finished Sample Type Importer
15 Jan 2024 23:30:50,463 INFO : Loading xar
15 Jan 2024 23:30:52,266 INFO : Starting import from test_S01_S02_DNP_ForPublication_2023-03-17_16-24-18.sky.zip
15 Jan 2024 23:30:52,270 INFO : Starting to import Skyline document from test_S01_S02_DNP_ForPublication_2023-03-17_16-24-18.sky.zip
15 Jan 2024 23:30:52,270 INFO : Expanding test_S01_S02_DNP_ForPublication.skyd
15 Jan 2024 23:30:52,732 INFO : Expanding test_S01_S02_DNP_ForPublication.sky.view
15 Jan 2024 23:30:52,794 INFO : Expanding test_S01_S02_DNP_ForPublication.sky
15 Jan 2024 23:30:52,834 INFO : Expanding test_S01_S02_DNP_ForPublication.skyl
15 Jan 2024 23:30:53,000 INFO : 2% Done
15 Jan 2024 23:30:54,567 INFO : Inserting A2M
15 Jan 2024 23:30:54,576 INFO : 5% Done
15 Jan 2024 23:30:54,675 INFO : Inserting ADIPOQ
15 Jan 2024 23:30:54,685 INFO : 7% Done
15 Jan 2024 23:30:54,781 INFO : Inserting APOE
15 Jan 2024 23:30:54,790 INFO : 9% Done
15 Jan 2024 23:30:54,885 INFO : Inserting BCHE
15 Jan 2024 23:30:54,895 INFO : 11% Done
15 Jan 2024 23:30:55,000 INFO : 13% Done
15 Jan 2024 23:30:55,101 INFO : Inserting C3
15 Jan 2024 23:30:55,110 INFO : 15% Done
15 Jan 2024 23:30:55,208 INFO : Inserting CST3
15 Jan 2024 23:30:55,217 INFO : 17% Done
15 Jan 2024 23:30:55,315 INFO : Inserting DKK3
15 Jan 2024 23:30:55,329 INFO : 20% Done
15 Jan 2024 23:30:55,460 INFO : 23% Done
15 Jan 2024 23:30:55,576 INFO : Inserting FABP5
15 Jan 2024 23:30:55,586 INFO : 25% Done
15 Jan 2024 23:30:55,691 INFO : 26% Done
15 Jan 2024 23:30:55,793 INFO : Inserting FGA
15 Jan 2024 23:30:55,802 INFO : 28% Done
15 Jan 2024 23:30:55,906 INFO : 30% Done
15 Jan 2024 23:30:56,005 INFO : Inserting GRN
15 Jan 2024 23:30:56,013 INFO : 32% Done
15 Jan 2024 23:30:56,127 INFO : 34% Done
15 Jan 2024 23:30:56,226 INFO : Inserting HPX
15 Jan 2024 23:30:56,235 INFO : 36% Done
15 Jan 2024 23:30:56,332 INFO : Inserting HSPA1L
15 Jan 2024 23:30:56,341 INFO : 38% Done
15 Jan 2024 23:30:56,440 INFO : Inserting HSPA5
15 Jan 2024 23:30:56,450 INFO : 40% Done
15 Jan 2024 23:30:56,557 INFO : Inserting ICAM1
15 Jan 2024 23:30:56,565 INFO : 42% Done
15 Jan 2024 23:30:56,677 INFO : 44% Done
15 Jan 2024 23:30:56,779 INFO : Inserting ITIH2
15 Jan 2024 23:30:56,788 INFO : 46% Done
15 Jan 2024 23:30:56,892 INFO : 48% Done
15 Jan 2024 23:30:56,990 INFO : Inserting LMO7
15 Jan 2024 23:30:56,999 INFO : 50% Done
15 Jan 2024 23:30:57,100 INFO : Inserting MASP2
15 Jan 2024 23:30:57,109 INFO : 53% Done
15 Jan 2024 23:30:57,215 INFO : 55% Done
15 Jan 2024 23:30:57,315 INFO : Inserting PGK1
15 Jan 2024 23:30:57,321 INFO : 56% Done
15 Jan 2024 23:30:57,399 INFO : Inserting PKM
15 Jan 2024 23:30:57,409 INFO : 58% Done
15 Jan 2024 23:30:57,505 INFO : Inserting PLD3
15 Jan 2024 23:30:57,514 INFO : 60% Done
15 Jan 2024 23:30:57,612 INFO : Inserting PPP3CB
15 Jan 2024 23:30:57,621 INFO : 62% Done
15 Jan 2024 23:30:57,720 INFO : Inserting PRG4
15 Jan 2024 23:30:57,729 INFO : 64% Done
15 Jan 2024 23:30:57,823 INFO : Inserting PTGDS
15 Jan 2024 23:30:57,830 INFO : 66% Done
15 Jan 2024 23:30:57,919 INFO : 68% Done
15 Jan 2024 23:30:58,017 INFO : Inserting SAA1
15 Jan 2024 23:30:58,026 INFO : 70% Done
15 Jan 2024 23:30:58,123 INFO : Inserting SELE
15 Jan 2024 23:30:58,134 INFO : 72% Done
15 Jan 2024 23:30:58,240 INFO : Inserting SERPINA3
15 Jan 2024 23:30:58,249 INFO : 74% Done
15 Jan 2024 23:30:58,348 INFO : Inserting SERPINF2
15 Jan 2024 23:30:58,358 INFO : 75% Done
15 Jan 2024 23:30:58,466 INFO : 77% Done
15 Jan 2024 23:30:58,563 INFO : Inserting SERPING1
15 Jan 2024 23:30:58,572 INFO : 79% Done
15 Jan 2024 23:30:58,683 INFO : Inserting SOD3
15 Jan 2024 23:30:58,693 INFO : 81% Done
15 Jan 2024 23:30:58,804 INFO : 83% Done
15 Jan 2024 23:30:58,905 INFO : Inserting SPP2
15 Jan 2024 23:30:58,915 INFO : 86% Done
15 Jan 2024 23:30:59,032 INFO : 88% Done
15 Jan 2024 23:30:59,130 INFO : Inserting TUBA4A
15 Jan 2024 23:30:59,140 INFO : 90% Done
15 Jan 2024 23:30:59,251 INFO : 92% Done
15 Jan 2024 23:30:59,347 INFO : Inserting VCAM1
15 Jan 2024 23:30:59,356 INFO : 94% Done
15 Jan 2024 23:30:59,466 INFO : 96% Done
15 Jan 2024 23:30:59,569 INFO : Inserting ENO1 (Baker's yeast)
15 Jan 2024 23:30:59,579 INFO : 98% Done
15 Jan 2024 23:30:59,680 INFO : Done parsing Skyline document.
15 Jan 2024 23:30:59,863 INFO : Creating and populating temp tables for Proportion values
15 Jan 2024 23:31:00,087 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
15 Jan 2024 23:31:00,498 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
15 Jan 2024 23:31:00,782 INFO : Cleaning up temp tables
15 Jan 2024 23:31:01,211 INFO : Completed import of Skyline document from test_S01_S02_DNP_ForPublication_2023-03-17_16-24-18.sky.zip
15 Jan 2024 23:31:01,213 INFO : 100% Done
15 Jan 2024 23:31:01,221 INFO : Starting import from 20240113_NatComms_Predictive_PD_Markers_Paired_CSF_Plasma_Serum_2024-01-13_15-43-55.sky.zip
15 Jan 2024 23:31:01,223 INFO : Starting to import Skyline document from 20240113_NatComms_Predictive_PD_Markers_Paired_CSF_Plasma_Serum_2024-01-13_15-43-55.sky.zip
15 Jan 2024 23:31:01,224 INFO : Expanding 20240113_NatComms_Predictive_PD_Markers_Paired_CSF_Plasma_Serum.skyd
15 Jan 2024 23:31:01,270 INFO : Expanding 20240113_NatComms_Predictive_PD_Markers_Paired_CSF_Plasma_Serum.sky.view
15 Jan 2024 23:31:01,271 INFO : Expanding 20240113_NatComms_Predictive_PD_Markers_Paired_CSF_Plasma_Serum.sky
15 Jan 2024 23:31:01,278 INFO : Expanding 20240113_NatComms_Predictive_PD_Markers_Paired_CSF_Plasma_Serum.skyl
15 Jan 2024 23:31:01,294 INFO : 2% Done
15 Jan 2024 23:31:01,554 INFO : Inserting A2M
15 Jan 2024 23:31:01,558 INFO : 5% Done
15 Jan 2024 23:31:01,578 INFO : Inserting ADIPOQ
15 Jan 2024 23:31:01,580 INFO : 7% Done
15 Jan 2024 23:31:01,596 INFO : Inserting APOE
15 Jan 2024 23:31:01,599 INFO : 9% Done
15 Jan 2024 23:31:01,614 INFO : Inserting BCHE
15 Jan 2024 23:31:01,617 INFO : 11% Done
15 Jan 2024 23:31:01,636 INFO : 13% Done
15 Jan 2024 23:31:01,652 INFO : Inserting C3
15 Jan 2024 23:31:01,655 INFO : 15% Done
15 Jan 2024 23:31:01,670 INFO : Inserting CST3
15 Jan 2024 23:31:01,673 INFO : 17% Done
15 Jan 2024 23:31:01,688 INFO : Inserting DKK3
15 Jan 2024 23:31:01,691 INFO : 20% Done
15 Jan 2024 23:31:01,713 INFO : 22% Done
15 Jan 2024 23:31:01,733 INFO : Inserting FABP5
15 Jan 2024 23:31:01,736 INFO : 24% Done
15 Jan 2024 23:31:01,754 INFO : 25% Done
15 Jan 2024 23:31:01,770 INFO : Inserting FGA
15 Jan 2024 23:31:01,773 INFO : 27% Done
15 Jan 2024 23:31:01,790 INFO : 29% Done
15 Jan 2024 23:31:01,805 INFO : Inserting GRN
15 Jan 2024 23:31:01,808 INFO : 31% Done
15 Jan 2024 23:31:01,827 INFO : 33% Done
15 Jan 2024 23:31:01,842 INFO : Inserting HPX
15 Jan 2024 23:31:01,845 INFO : 36% Done
15 Jan 2024 23:31:01,861 INFO : Inserting HSPA1L
15 Jan 2024 23:31:01,864 INFO : 38% Done
15 Jan 2024 23:31:01,880 INFO : Inserting HSPA5
15 Jan 2024 23:31:01,883 INFO : 40% Done
15 Jan 2024 23:31:01,899 INFO : Inserting ICAM1
15 Jan 2024 23:31:01,902 INFO : 42% Done
15 Jan 2024 23:31:01,920 INFO : 43% Done
15 Jan 2024 23:31:01,936 INFO : Inserting ITIH2
15 Jan 2024 23:31:01,939 INFO : 46% Done
15 Jan 2024 23:31:01,957 INFO : 48% Done
15 Jan 2024 23:31:01,973 INFO : Inserting LMO7
15 Jan 2024 23:31:01,976 INFO : 50% Done
15 Jan 2024 23:31:01,992 INFO : Inserting MASP2
15 Jan 2024 23:31:01,994 INFO : 52% Done
15 Jan 2024 23:31:02,013 INFO : 54% Done
15 Jan 2024 23:31:02,029 INFO : Inserting PGK1
15 Jan 2024 23:31:02,032 INFO : 55% Done
15 Jan 2024 23:31:02,045 INFO : Inserting PKM
15 Jan 2024 23:31:02,047 INFO : 57% Done
15 Jan 2024 23:31:02,062 INFO : Inserting PLD3
15 Jan 2024 23:31:02,065 INFO : 59% Done
15 Jan 2024 23:31:02,080 INFO : Inserting PPP3CB
15 Jan 2024 23:31:02,083 INFO : 61% Done
15 Jan 2024 23:31:02,097 INFO : Inserting PRG4
15 Jan 2024 23:31:02,100 INFO : 63% Done
15 Jan 2024 23:31:02,116 INFO : Inserting PTGDS
15 Jan 2024 23:31:02,118 INFO : 65% Done
15 Jan 2024 23:31:02,131 INFO : 67% Done
15 Jan 2024 23:31:02,147 INFO : Inserting SAA1
15 Jan 2024 23:31:02,150 INFO : 69% Done
15 Jan 2024 23:31:02,166 INFO : Inserting SELE
15 Jan 2024 23:31:02,169 INFO : 71% Done
15 Jan 2024 23:31:02,186 INFO : Inserting SERPINA3
15 Jan 2024 23:31:02,197 INFO : 73% Done
15 Jan 2024 23:31:02,213 INFO : Inserting SERPINF2
15 Jan 2024 23:31:02,216 INFO : 74% Done
15 Jan 2024 23:31:02,235 INFO : 76% Done
15 Jan 2024 23:31:02,251 INFO : Inserting SERPING1
15 Jan 2024 23:31:02,254 INFO : 78% Done
15 Jan 2024 23:31:02,270 INFO : Inserting SOD3
15 Jan 2024 23:31:02,272 INFO : 80% Done
15 Jan 2024 23:31:02,291 INFO : 82% Done
15 Jan 2024 23:31:02,307 INFO : Inserting SPP2
15 Jan 2024 23:31:02,309 INFO : 84% Done
15 Jan 2024 23:31:02,328 INFO : 86% Done
15 Jan 2024 23:31:02,343 INFO : Inserting TUBA4A
15 Jan 2024 23:31:02,346 INFO : 88% Done
15 Jan 2024 23:31:02,363 INFO : 90% Done
15 Jan 2024 23:31:02,378 INFO : Inserting VCAM1
15 Jan 2024 23:31:02,381 INFO : 92% Done
15 Jan 2024 23:31:02,399 INFO : 94% Done
15 Jan 2024 23:31:02,415 INFO : Inserting ENO1 (Baker's yeast)
15 Jan 2024 23:31:02,419 INFO : 98% Done
15 Jan 2024 23:31:02,451 INFO : Done parsing Skyline document.
15 Jan 2024 23:31:02,640 INFO : Creating and populating temp tables for Proportion values
15 Jan 2024 23:31:02,794 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
15 Jan 2024 23:31:02,848 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
15 Jan 2024 23:31:02,888 INFO : Cleaning up temp tables
15 Jan 2024 23:31:03,218 INFO : Completed import of Skyline document from 20240113_NatComms_Predictive_PD_Markers_Paired_CSF_Plasma_Serum_2024-01-13_15-43-55.sky.zip
15 Jan 2024 23:31:03,220 INFO : 100% Done
15 Jan 2024 23:31:03,225 INFO : Starting import from 20240113_NatComms_Predictive_PD_Markers_New_iRBD_2024-01-13_16-03-15.sky.zip
15 Jan 2024 23:31:03,226 INFO : Starting to import Skyline document from 20240113_NatComms_Predictive_PD_Markers_New_iRBD_2024-01-13_16-03-15.sky.zip
15 Jan 2024 23:31:03,227 INFO : Expanding 20240113_NatComms_Predictive_PD_Markers_New_iRBD.skyd
15 Jan 2024 23:31:03,432 INFO : Expanding 20240113_NatComms_Predictive_PD_Markers_New_iRBD.sky.view
15 Jan 2024 23:31:03,436 INFO : Expanding 20240113_NatComms_Predictive_PD_Markers_New_iRBD.sky
15 Jan 2024 23:31:03,466 INFO : Expanding 20240113_NatComms_Predictive_PD_Markers_New_iRBD.skyl
15 Jan 2024 23:31:03,589 INFO : 2% Done
15 Jan 2024 23:31:04,248 INFO : Inserting A2M
15 Jan 2024 23:31:04,254 INFO : 5% Done
15 Jan 2024 23:31:04,318 INFO : Inserting ADIPOQ
15 Jan 2024 23:31:04,325 INFO : 7% Done
15 Jan 2024 23:31:04,387 INFO : Inserting APOE
15 Jan 2024 23:31:04,394 INFO : 9% Done
15 Jan 2024 23:31:04,456 INFO : Inserting BCHE
15 Jan 2024 23:31:04,463 INFO : 11% Done
15 Jan 2024 23:31:04,531 INFO : 13% Done
15 Jan 2024 23:31:04,595 INFO : Inserting C3
15 Jan 2024 23:31:04,601 INFO : 15% Done
15 Jan 2024 23:31:04,663 INFO : Inserting CST3
15 Jan 2024 23:31:04,670 INFO : 17% Done
15 Jan 2024 23:31:04,732 INFO : Inserting DKK3
15 Jan 2024 23:31:04,741 INFO : 19% Done
15 Jan 2024 23:31:04,827 INFO : 22% Done
15 Jan 2024 23:31:04,902 INFO : Inserting FABP5
15 Jan 2024 23:31:04,909 INFO : 24% Done
15 Jan 2024 23:31:04,977 INFO : 25% Done
15 Jan 2024 23:31:05,041 INFO : Inserting FGA
15 Jan 2024 23:31:05,048 INFO : 27% Done
15 Jan 2024 23:31:05,130 INFO : 29% Done
15 Jan 2024 23:31:05,202 INFO : Inserting GRN
15 Jan 2024 23:31:05,210 INFO : 31% Done
15 Jan 2024 23:31:05,295 INFO : 33% Done
15 Jan 2024 23:31:05,372 INFO : Inserting HPX
15 Jan 2024 23:31:05,380 INFO : 35% Done
15 Jan 2024 23:31:05,455 INFO : Inserting HSPA1L
15 Jan 2024 23:31:05,463 INFO : 37% Done
15 Jan 2024 23:31:05,537 INFO : Inserting HSPA5
15 Jan 2024 23:31:05,546 INFO : 39% Done
15 Jan 2024 23:31:05,618 INFO : Inserting ICAM1
15 Jan 2024 23:31:05,626 INFO : 41% Done
15 Jan 2024 23:31:05,702 INFO : 43% Done
15 Jan 2024 23:31:05,768 INFO : Inserting ITIH2
15 Jan 2024 23:31:05,776 INFO : 46% Done
15 Jan 2024 23:31:05,853 INFO : 48% Done
15 Jan 2024 23:31:05,924 INFO : Inserting LMO7
15 Jan 2024 23:31:05,932 INFO : 50% Done
15 Jan 2024 23:31:06,002 INFO : Inserting MASP2
15 Jan 2024 23:31:06,010 INFO : 52% Done
15 Jan 2024 23:31:06,087 INFO : 54% Done
15 Jan 2024 23:31:06,156 INFO : Inserting PGK1
15 Jan 2024 23:31:06,161 INFO : 55% Done
15 Jan 2024 23:31:06,218 INFO : Inserting PKM
15 Jan 2024 23:31:06,227 INFO : 57% Done
15 Jan 2024 23:31:06,294 INFO : Inserting PLD3
15 Jan 2024 23:31:06,301 INFO : 59% Done
15 Jan 2024 23:31:06,373 INFO : Inserting PPP3CB
15 Jan 2024 23:31:06,380 INFO : 61% Done
15 Jan 2024 23:31:06,449 INFO : Inserting PRG4
15 Jan 2024 23:31:06,457 INFO : 63% Done
15 Jan 2024 23:31:06,527 INFO : Inserting PTGDS
15 Jan 2024 23:31:06,533 INFO : 65% Done
15 Jan 2024 23:31:06,596 INFO : 66% Done
15 Jan 2024 23:31:06,676 INFO : Inserting SAA1
15 Jan 2024 23:31:06,687 INFO : 69% Done
15 Jan 2024 23:31:06,766 INFO : Inserting SELE
15 Jan 2024 23:31:06,775 INFO : 71% Done
15 Jan 2024 23:31:06,849 INFO : Inserting SERPINA3
15 Jan 2024 23:31:06,857 INFO : 73% Done
15 Jan 2024 23:31:06,925 INFO : Inserting SERPINF2
15 Jan 2024 23:31:06,933 INFO : 74% Done
15 Jan 2024 23:31:07,008 INFO : 76% Done
15 Jan 2024 23:31:07,075 INFO : Inserting SERPING1
15 Jan 2024 23:31:07,083 INFO : 78% Done
15 Jan 2024 23:31:07,153 INFO : Inserting SOD3
15 Jan 2024 23:31:07,161 INFO : 80% Done
15 Jan 2024 23:31:07,239 INFO : 82% Done
15 Jan 2024 23:31:07,312 INFO : Inserting SPP2
15 Jan 2024 23:31:07,320 INFO : 84% Done
15 Jan 2024 23:31:07,398 INFO : 86% Done
15 Jan 2024 23:31:07,467 INFO : Inserting TUBA4A
15 Jan 2024 23:31:07,475 INFO : 88% Done
15 Jan 2024 23:31:07,549 INFO : 90% Done
15 Jan 2024 23:31:07,615 INFO : Inserting VCAM1
15 Jan 2024 23:31:07,623 INFO : 92% Done
15 Jan 2024 23:31:07,699 INFO : 94% Done
15 Jan 2024 23:31:07,775 INFO : Inserting ENO1 (Baker's yeast)
15 Jan 2024 23:31:07,792 INFO : 98% Done
15 Jan 2024 23:31:07,943 INFO : Done parsing Skyline document.
15 Jan 2024 23:31:08,142 INFO : Creating and populating temp tables for Proportion values
15 Jan 2024 23:31:08,332 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
15 Jan 2024 23:31:08,611 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
15 Jan 2024 23:31:08,811 INFO : Cleaning up temp tables
15 Jan 2024 23:31:09,145 INFO : Completed import of Skyline document from 20240113_NatComms_Predictive_PD_Markers_New_iRBD_2024-01-13_16-03-15.sky.zip
15 Jan 2024 23:31:09,147 INFO : 100% Done
15 Jan 2024 23:31:09,160 INFO : Done importing xar
15 Jan 2024 23:31:09,162 INFO : Loading pages and webpart properties
15 Jan 2024 23:31:09,225 INFO : Done importing 3 page(s) with 5 webpart(s)
15 Jan 2024 23:31:09,225 INFO : Loading File Browser config
15 Jan 2024 23:31:09,225 INFO : Done importing File Browser config
15 Jan 2024 23:31:09,226 INFO : Starting Sample Status Data import
15 Jan 2024 23:31:09,226 INFO : No sample types XAR file to process.
15 Jan 2024 23:31:09,226 INFO : Finished importing Sample Status Data
15 Jan 2024 23:31:09,231 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
15 Jan 2024 23:31:09,233 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
15 Jan 2024 23:31:09,234 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
15 Jan 2024 23:31:09,234 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
15 Jan 2024 23:31:09,235 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
15 Jan 2024 23:31:09,235 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
15 Jan 2024 23:31:09,237 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
15 Jan 2024 23:31:09,242 INFO : Moving files to folder /Panorama Public/2024/UCL ICH Translational Mass Spec Group - DNP_Plasma_Targeted_MS and creating symlinks
15 Jan 2024 23:31:12,469 INFO : Aligning data files urls in folder: /Panorama Public/2024/UCL ICH Translational Mass Spec Group - DNP_Plasma_Targeted_MS
15 Jan 2024 23:31:12,484 INFO : Importing files metadata.
15 Jan 2024 23:31:12,485 INFO :
15 Jan 2024 23:31:12,485 INFO : Experiment import completed successfully.
15 Jan 2024 23:31:12,485 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
15 Jan 2024 23:31:12,506 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
15 Jan 2024 23:31:12,506 INFO :
15 Jan 2024 23:31:12,506 INFO : Checking for library folders.
15 Jan 2024 23:31:12,508 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
15 Jan 2024 23:31:12,525 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
15 Jan 2024 23:31:12,525 INFO :
15 Jan 2024 23:31:12,525 INFO : Finishing up experiment copy.
15 Jan 2024 23:31:12,529 INFO : Updating TargetedMS experiment entry in target folder /Panorama Public/2024/UCL ICH Translational Mass Spec Group - DNP_Plasma_Targeted_MS
15 Jan 2024 23:31:12,530 INFO : Setting version on new experiment to 2
15 Jan 2024 23:31:12,532 INFO : Updating permanent link to point to the new copy of the data.
15 Jan 2024 23:31:12,535 INFO : Removing copy permissions given to Panorama Public
15 Jan 2024 23:31:12,539 INFO : Adding read permissions to all users that are folder admins in the source folder.
15 Jan 2024 23:31:12,540 INFO : Adding read permissions to all users that had read access to previous copy.
15 Jan 2024 23:31:12,540 INFO : Assigning ReaderRole to j.hallqvist@ucl.ac.uk
15 Jan 2024 23:31:12,540 INFO : Assigning PanoramaPublicSubmitterRole to j.hallqvist@ucl.ac.uk
15 Jan 2024 23:31:12,546 INFO : User j.hallqvist@ucl.ac.uk is already a member of group Panorama Public Submitters
15 Jan 2024 23:31:12,546 INFO : Updating the 'Raw Data' tab configuration
15 Jan 2024 23:31:12,547 INFO : Making folder public.
15 Jan 2024 23:31:12,550 INFO : Hiding the Data Pipeline tab.
15 Jan 2024 23:31:12,554 INFO : Creating a new versioned URL for the previous copy of the data: DNP_Pub_v1
15 Jan 2024 23:31:12,601 INFO : Setting the permanent link on the previous copy to DNP_Pub_v1
15 Jan 2024 23:31:12,603 INFO : Updating Submission. Setting copiedExperimentId to 1757
15 Jan 2024 23:31:15,250 INFO : Copying ProteomeXchange ID from the previous copy of the data.
15 Jan 2024 23:31:15,250 INFO : Copying DOI from the previous copy of the data.
15 Jan 2024 23:31:15,251 INFO : Removing DOI from the previous copy
15 Jan 2024 23:31:15,297 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'