14 Nov 2024 21:23:30,061 INFO : Copying experiment "Protein sequencing with single amino acid resolution discerns peptides that discriminate tropomyosin proteoforms" from folder /U of Virginia - Sheynkman Lab/JPR_manuscript_November2024 to /Panorama Public/2024/U of Virginia Sheynkman Lab - JPR_manuscript_November2024
14 Nov 2024 21:23:30,061 INFO : =======================================
14 Nov 2024 21:23:30,075 DEBUG: Resetting Job ID: 53384f39-853f-103d-a53a-8d1d6db29c7c
14 Nov 2024 21:23:30,098 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
14 Nov 2024 21:23:30,098 INFO : 
14 Nov 2024 21:23:30,098 INFO : Exporting experiment.
14 Nov 2024 21:23:32,848 INFO : Exporting files metadata.
14 Nov 2024 21:23:32,849 DEBUG: [/U of Virginia - Sheynkman Lab/JPR_manuscript_November2024]  Writing files metadata to /data/labkey/files/Panorama Public/2024/U of Virginia Sheynkman Lab - JPR_manuscript_November2024/@files/export
14 Nov 2024 21:23:32,863 INFO : 
14 Nov 2024 21:23:32,863 INFO : Experiment export completed successfully.
14 Nov 2024 21:23:32,863 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
14 Nov 2024 21:23:32,886 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
14 Nov 2024 21:23:32,886 INFO : 
14 Nov 2024 21:23:32,886 INFO : Importing experiment.
14 Nov 2024 21:23:32,912 DEBUG: [/Panorama Public/2024/U of Virginia Sheynkman Lab - JPR_manuscript_November2024] Importing folder properties from: /data/labkey/files/Panorama Public/2024/U of Virginia Sheynkman Lab - JPR_manuscript_November2024/@files/export
14 Nov 2024 21:23:32,913 INFO : Loading folder properties (folder type, settings and active modules)
14 Nov 2024 21:23:32,913 DEBUG: [/Panorama Public/2024/U of Virginia Sheynkman Lab - JPR_manuscript_November2024] Folder type: Targeted MS
14 Nov 2024 21:23:32,914 DEBUG: [/Panorama Public/2024/U of Virginia Sheynkman Lab - JPR_manuscript_November2024] Active modules: Query, FileContent, Issues, TargetedMS, Assay, Announcements, PanoramaPublic, Protein, Core, Wiki, API, Pipeline, Experiment, Search
14 Nov 2024 21:23:32,982 INFO : Done importing folder properties (folder type, settings and active modules)
14 Nov 2024 21:23:32,983 INFO : Loading container specific module properties
14 Nov 2024 21:23:32,989 INFO : Done importing container specific module properties
14 Nov 2024 21:23:32,991 INFO : Loading queries
14 Nov 2024 21:23:32,995 INFO : 1 query imported
14 Nov 2024 21:23:32,995 INFO : Done importing queries
14 Nov 2024 21:23:32,996 INFO : Loading grid views
14 Nov 2024 21:23:32,999 INFO : 1 custom view imported
14 Nov 2024 21:23:32,999 INFO : Done importing grid views
14 Nov 2024 21:23:33,000 INFO : Loading etl definitions
14 Nov 2024 21:23:33,000 INFO : Loading wikis
14 Nov 2024 21:23:33,002 INFO : 0 wikis imported
14 Nov 2024 21:23:33,002 INFO : Done importing wikis
14 Nov 2024 21:23:33,003 INFO : Starting Data Class Importer
14 Nov 2024 21:23:33,004 INFO : No types XAR file to process.
14 Nov 2024 21:23:33,004 INFO : Finished Data Class Importer
14 Nov 2024 21:23:33,004 INFO : Starting to copy files
14 Nov 2024 21:23:33,004 INFO : Copied 0 files
14 Nov 2024 21:23:33,004 INFO : Ensuring exp.data rows exist for imported files
14 Nov 2024 21:23:33,061 INFO : Starting Sample Type Importer
14 Nov 2024 21:23:33,061 INFO : No types XAR file to process.
14 Nov 2024 21:23:33,061 INFO : Finished Sample Type Importer
14 Nov 2024 21:23:33,062 INFO : Loading xar
14 Nov 2024 21:23:33,624 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-14179:TargetedMS.ImportSkyZip'
14 Nov 2024 21:23:33,625 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-14179:TargetedMS.ImportSkyZip.Core'
14 Nov 2024 21:23:33,626 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-14179:TargetedMS.ImportSkyZip.Output'
14 Nov 2024 21:23:33,627 DEBUG: Protocol import complete
14 Nov 2024 21:23:33,628 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-14179:Protein+sequencing+with+single+amino+acid+resolution+discerns+peptides+that+discriminate+tropomyosin+proteoforms'
14 Nov 2024 21:23:33,628 DEBUG: Experiment/Run group import complete
14 Nov 2024 21:23:33,633 DEBUG: Protocol action set import complete
14 Nov 2024 21:23:33,639 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-14179:TargetedMS.ImportSkyZip'
14 Nov 2024 21:23:33,646 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-14179:6451b936-84be-103d-a6fe-dc22ffcd6791'
14 Nov 2024 21:23:33,649 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-14179:6451b8f9-84be-103d-a6fe-dc22ffcd6791'
14 Nov 2024 21:23:33,649 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-14179:TargetedMS.ImportSkyZip.Core'
14 Nov 2024 21:23:33,651 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-14179:TargetedMS.ImportSkyZip.Output'
14 Nov 2024 21:23:33,651 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-14179:6451baed-84be-103d-a6fe-dc22ffcd6791'
14 Nov 2024 21:23:33,656 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2024/U%20of%20Virginia%20Sheynkman%20Lab%20-%20JPR_manuscript_November2024/@files/export/xar/experiments_and_runs.xar.exploded/Run231602/240502_LysC_Azide_Analysis_EDJ_2024-11-14_08-58-09/240502_LysC_Azide_Analysis_EDJ.skyd into the system
14 Nov 2024 21:23:33,656 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2024/U%20of%20Virginia%20Sheynkman%20Lab%20-%20JPR_manuscript_November2024/@files/export/xar/experiments_and_runs.xar.exploded/Run231602/240502_LysC_Azide_Analysis_EDJ_2024-11-14_08-58-09/240502_LysC_Azide_Analysis_EDJ.skyd into the system
14 Nov 2024 21:23:33,656 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2024/U%20of%20Virginia%20Sheynkman%20Lab%20-%20JPR_manuscript_November2024/@files/export/xar/experiments_and_runs.xar.exploded/Run231602/240502_LysC_Azide_Analysis_EDJ_2024-11-14_08-58-09.sky.zip into the system
14 Nov 2024 21:23:33,657 INFO : Starting import from 240502_LysC_Azide_Analysis_EDJ_2024-11-14_08-58-09.sky.zip
14 Nov 2024 21:23:33,659 INFO : Starting to import Skyline document from 240502_LysC_Azide_Analysis_EDJ_2024-11-14_08-58-09.sky.zip
14 Nov 2024 21:23:33,668 INFO : Expanding TPM.blib
14 Nov 2024 21:23:33,670 INFO : Expanding 240502_LysC_Azide_Analysis_EDJ.skyd
14 Nov 2024 21:23:33,982 INFO : Expanding 240502_LysC_Azide_Analysis_EDJ.sky.view
14 Nov 2024 21:23:33,983 INFO : Expanding 240502_LysC_Azide_Analysis_EDJ.sky
14 Nov 2024 21:23:33,992 INFO : Expanding 240502_LysC_Azide_Analysis_EDJ.skyl
14 Nov 2024 21:23:33,994 INFO : Reading Skyline file, 240502_LysC_Azide_Analysis_EDJ.sky, to determine if the TransitionChromInfos in the document should be stored...
14 Nov 2024 21:23:34,008 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
14 Nov 2024 21:23:34,009 WARN : The version of this Skyline document is 24.1. This is newer than the highest supported version 23.1
14 Nov 2024 21:23:34,976 DEBUG: Starting to load chromatogram headers
14 Nov 2024 21:23:34,979 DEBUG: Done loading chromatogram headers
14 Nov 2024 21:23:35,283 INFO : Inserting 16_azide_peptides
14 Nov 2024 21:23:35,302 INFO : 1% Done
14 Nov 2024 21:23:35,332 INFO : 2% Done
14 Nov 2024 21:23:35,397 INFO : 3% Done
14 Nov 2024 21:23:35,480 INFO : 5% Done
14 Nov 2024 21:23:35,547 INFO : 6% Done
14 Nov 2024 21:23:35,603 INFO : 7% Done
14 Nov 2024 21:23:35,656 INFO : 8% Done
14 Nov 2024 21:23:35,702 INFO : 9% Done
14 Nov 2024 21:23:35,739 INFO : 10% Done
14 Nov 2024 21:23:35,769 INFO : 11% Done
14 Nov 2024 21:23:35,826 INFO : 12% Done
14 Nov 2024 21:23:35,855 DEBUG: Total peptides inserted: 15
14 Nov 2024 21:23:35,855 INFO : Inserting peptides1
14 Nov 2024 21:23:35,937 INFO : 15% Done
14 Nov 2024 21:23:36,032 DEBUG: Total peptides inserted: 6
14 Nov 2024 21:23:36,032 INFO : Inserting TPM2-210
14 Nov 2024 21:23:36,096 INFO : 17% Done
14 Nov 2024 21:23:36,158 INFO : 18% Done
14 Nov 2024 21:23:36,183 INFO : 19% Done
14 Nov 2024 21:23:36,237 INFO : 20% Done
14 Nov 2024 21:23:36,275 INFO : 21% Done
14 Nov 2024 21:23:36,322 INFO : 22% Done
14 Nov 2024 21:23:36,370 INFO : 23% Done
14 Nov 2024 21:23:36,416 INFO : 24% Done
14 Nov 2024 21:23:36,488 INFO : 25% Done
14 Nov 2024 21:23:36,601 INFO : 27% Done
14 Nov 2024 21:23:36,728 INFO : 29% Done
14 Nov 2024 21:23:36,795 DEBUG: Total peptides inserted: 20
14 Nov 2024 21:23:36,795 INFO : Inserting TPM1
14 Nov 2024 21:23:36,858 INFO : 31% Done
14 Nov 2024 21:23:36,943 INFO : 32% Done
14 Nov 2024 21:23:36,981 INFO : 33% Done
14 Nov 2024 21:23:37,031 INFO : 34% Done
14 Nov 2024 21:23:37,054 INFO : 35% Done
14 Nov 2024 21:23:37,235 INFO : 38% Done
14 Nov 2024 21:23:37,347 INFO : 39% Done
14 Nov 2024 21:23:37,374 INFO : 40% Done
14 Nov 2024 21:23:37,467 INFO : 42% Done
14 Nov 2024 21:23:37,580 INFO : 44% Done
14 Nov 2024 21:23:37,706 INFO : 46% Done
14 Nov 2024 21:23:37,771 DEBUG: Total peptides inserted: 21
14 Nov 2024 21:23:37,772 INFO : Inserting BSA
14 Nov 2024 21:23:37,967 INFO : 49% Done
14 Nov 2024 21:23:38,076 INFO : 50% Done
14 Nov 2024 21:23:38,220 INFO : 52% Done
14 Nov 2024 21:23:38,332 INFO : 53% Done
14 Nov 2024 21:23:38,381 INFO : 54% Done
14 Nov 2024 21:23:38,446 INFO : 55% Done
14 Nov 2024 21:23:38,571 INFO : 58% Done
14 Nov 2024 21:23:38,694 INFO : 59% Done
14 Nov 2024 21:23:38,753 INFO : 60% Done
14 Nov 2024 21:23:38,808 INFO : 61% Done
14 Nov 2024 21:23:39,036 INFO : 64% Done
14 Nov 2024 21:23:39,195 INFO : 66% Done
14 Nov 2024 21:23:39,263 INFO : 67% Done
14 Nov 2024 21:23:39,357 INFO : 69% Done
14 Nov 2024 21:23:39,448 INFO : 70% Done
14 Nov 2024 21:23:39,488 INFO : 71% Done
14 Nov 2024 21:23:39,605 INFO : 73% Done
14 Nov 2024 21:23:39,709 INFO : 74% Done
14 Nov 2024 21:23:39,903 INFO : 77% Done
14 Nov 2024 21:23:40,194 INFO : 80% Done
14 Nov 2024 21:23:40,308 INFO : 81% Done
14 Nov 2024 21:23:40,387 INFO : 83% Done
14 Nov 2024 21:23:40,466 INFO : 84% Done
14 Nov 2024 21:23:40,613 INFO : 86% Done
14 Nov 2024 21:23:40,788 INFO : 89% Done
14 Nov 2024 21:23:41,072 INFO : 92% Done
14 Nov 2024 21:23:41,266 INFO : 94% Done
14 Nov 2024 21:23:41,342 INFO : 95% Done
14 Nov 2024 21:23:41,387 INFO : 96% Done
14 Nov 2024 21:23:41,458 INFO : 97% Done
14 Nov 2024 21:23:41,474 DEBUG: Total peptides inserted: 43
14 Nov 2024 21:23:41,474 INFO : Inserting AIEYCNYPEAFK
14 Nov 2024 21:23:41,496 INFO : 98% Done
14 Nov 2024 21:23:41,536 DEBUG: Total peptides inserted: 1
14 Nov 2024 21:23:41,536 INFO : Done parsing Skyline document.
14 Nov 2024 21:23:41,578 INFO : Creating and populating temp tables for Proportion values
14 Nov 2024 21:23:41,583 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
14 Nov 2024 21:23:41,600 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
14 Nov 2024 21:23:41,608 INFO : Cleaning up temp tables
14 Nov 2024 21:23:41,855 INFO : Completed import of Skyline document from 240502_LysC_Azide_Analysis_EDJ_2024-11-14_08-58-09.sky.zip
14 Nov 2024 21:23:41,857 INFO : 100% Done
14 Nov 2024 21:23:41,861 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2024/U%20of%20Virginia%20Sheynkman%20Lab%20-%20JPR_manuscript_November2024/@files/export/xar/experiments_and_runs.xar.exploded/Run231602/240502_LysC_Azide_Analysis_EDJ_2024-11-14_08-58-09.sky.zip into the system
14 Nov 2024 21:23:42,034 INFO : Done importing xar
14 Nov 2024 21:23:42,035 INFO : Loading pages and webpart properties
14 Nov 2024 21:23:42,077 INFO : Done importing 3 page(s) with 4 webpart(s)
14 Nov 2024 21:23:42,077 INFO : Loading File Browser config
14 Nov 2024 21:23:42,077 INFO : Done importing File Browser config
14 Nov 2024 21:23:42,078 INFO : Starting Sample Status Data import
14 Nov 2024 21:23:42,078 INFO : No sample types XAR file to process.
14 Nov 2024 21:23:42,078 INFO : Finished importing Sample Status Data
14 Nov 2024 21:23:42,082 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
14 Nov 2024 21:23:42,084 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
14 Nov 2024 21:23:42,085 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
14 Nov 2024 21:23:42,085 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
14 Nov 2024 21:23:42,085 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
14 Nov 2024 21:23:42,085 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
14 Nov 2024 21:23:42,087 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
14 Nov 2024 21:23:42,094 INFO : Moving files to folder /Panorama Public/2024/U of Virginia Sheynkman Lab - JPR_manuscript_November2024 and creating symlinks
14 Nov 2024 21:23:42,097 DEBUG: Directory created: /data/labkey/files/Panorama Public/2024/U of Virginia Sheynkman Lab - JPR_manuscript_November2024/@files/RawFiles
14 Nov 2024 21:23:42,098 DEBUG: Moved file /data/labkey/files/U of Virginia - Sheynkman Lab/JPR_manuscript_November2024/@files/RawFiles/TPM.blib to /data/labkey/files/Panorama Public/2024/U of Virginia Sheynkman Lab - JPR_manuscript_November2024/@files/RawFiles/TPM.blib
14 Nov 2024 21:23:42,101 DEBUG: Created symlink /data/labkey/files/U of Virginia - Sheynkman Lab/JPR_manuscript_November2024/@files/RawFiles/TPM.blib targeting /data/labkey/files/Panorama Public/2024/U of Virginia Sheynkman Lab - JPR_manuscript_November2024/@files/RawFiles/TPM.blib
14 Nov 2024 21:23:42,102 DEBUG: Moved file /data/labkey/files/U of Virginia - Sheynkman Lab/JPR_manuscript_November2024/@files/RawFiles/240502_AC12_NS_16peptides_DDA_49min.raw to /data/labkey/files/Panorama Public/2024/U of Virginia Sheynkman Lab - JPR_manuscript_November2024/@files/RawFiles/240502_AC12_NS_16peptides_DDA_49min.raw
14 Nov 2024 21:23:42,103 DEBUG: Created symlink /data/labkey/files/U of Virginia - Sheynkman Lab/JPR_manuscript_November2024/@files/RawFiles/240502_AC12_NS_16peptides_DDA_49min.raw targeting /data/labkey/files/Panorama Public/2024/U of Virginia Sheynkman Lab - JPR_manuscript_November2024/@files/RawFiles/240502_AC12_NS_16peptides_DDA_49min.raw
14 Nov 2024 21:23:42,104 DEBUG: Moved file /data/labkey/files/U of Virginia - Sheynkman Lab/JPR_manuscript_November2024/@files/RawFiles/240502_AC12_NS_TPM2_DDA_49min.raw to /data/labkey/files/Panorama Public/2024/U of Virginia Sheynkman Lab - JPR_manuscript_November2024/@files/RawFiles/240502_AC12_NS_TPM2_DDA_49min.raw
14 Nov 2024 21:23:42,105 DEBUG: Created symlink /data/labkey/files/U of Virginia - Sheynkman Lab/JPR_manuscript_November2024/@files/RawFiles/240502_AC12_NS_TPM2_DDA_49min.raw targeting /data/labkey/files/Panorama Public/2024/U of Virginia Sheynkman Lab - JPR_manuscript_November2024/@files/RawFiles/240502_AC12_NS_TPM2_DDA_49min.raw
14 Nov 2024 21:23:42,106 DEBUG: Moved file /data/labkey/files/U of Virginia - Sheynkman Lab/JPR_manuscript_November2024/@files/RawFiles/240502_AC12_NS_TPM1_plus_2_DDA_49min.raw to /data/labkey/files/Panorama Public/2024/U of Virginia Sheynkman Lab - JPR_manuscript_November2024/@files/RawFiles/240502_AC12_NS_TPM1_plus_2_DDA_49min.raw
14 Nov 2024 21:23:42,107 DEBUG: Created symlink /data/labkey/files/U of Virginia - Sheynkman Lab/JPR_manuscript_November2024/@files/RawFiles/240502_AC12_NS_TPM1_plus_2_DDA_49min.raw targeting /data/labkey/files/Panorama Public/2024/U of Virginia Sheynkman Lab - JPR_manuscript_November2024/@files/RawFiles/240502_AC12_NS_TPM1_plus_2_DDA_49min.raw
14 Nov 2024 21:23:42,109 DEBUG: Moved file /data/labkey/files/U of Virginia - Sheynkman Lab/JPR_manuscript_November2024/@files/240502_LysC_Azide_Analysis_EDJ_2024-11-14_08-58-09.sky.zip to /data/labkey/files/Panorama Public/2024/U of Virginia Sheynkman Lab - JPR_manuscript_November2024/@files/240502_LysC_Azide_Analysis_EDJ_2024-11-14_08-58-09.sky.zip
14 Nov 2024 21:23:42,109 DEBUG: Created symlink /data/labkey/files/U of Virginia - Sheynkman Lab/JPR_manuscript_November2024/@files/240502_LysC_Azide_Analysis_EDJ_2024-11-14_08-58-09.sky.zip targeting /data/labkey/files/Panorama Public/2024/U of Virginia Sheynkman Lab - JPR_manuscript_November2024/@files/240502_LysC_Azide_Analysis_EDJ_2024-11-14_08-58-09.sky.zip
14 Nov 2024 21:23:42,110 DEBUG: Directory created: /data/labkey/files/Panorama Public/2024/U of Virginia Sheynkman Lab - JPR_manuscript_November2024/@files/240502_LysC_Azide_Analysis_EDJ_2024-11-14_08-58-09
14 Nov 2024 21:23:42,111 DEBUG: Moved file /data/labkey/files/U of Virginia - Sheynkman Lab/JPR_manuscript_November2024/@files/240502_LysC_Azide_Analysis_EDJ_2024-11-14_08-58-09/240502_LysC_Azide_Analysis_EDJ.skyd to /data/labkey/files/Panorama Public/2024/U of Virginia Sheynkman Lab - JPR_manuscript_November2024/@files/240502_LysC_Azide_Analysis_EDJ_2024-11-14_08-58-09/240502_LysC_Azide_Analysis_EDJ.skyd
14 Nov 2024 21:23:42,112 DEBUG: Created symlink /data/labkey/files/U of Virginia - Sheynkman Lab/JPR_manuscript_November2024/@files/240502_LysC_Azide_Analysis_EDJ_2024-11-14_08-58-09/240502_LysC_Azide_Analysis_EDJ.skyd targeting /data/labkey/files/Panorama Public/2024/U of Virginia Sheynkman Lab - JPR_manuscript_November2024/@files/240502_LysC_Azide_Analysis_EDJ_2024-11-14_08-58-09/240502_LysC_Azide_Analysis_EDJ.skyd
14 Nov 2024 21:23:42,113 DEBUG: Moved file /data/labkey/files/U of Virginia - Sheynkman Lab/JPR_manuscript_November2024/@files/240502_LysC_Azide_Analysis_EDJ_2024-11-14_08-58-09/TPM.blib to /data/labkey/files/Panorama Public/2024/U of Virginia Sheynkman Lab - JPR_manuscript_November2024/@files/240502_LysC_Azide_Analysis_EDJ_2024-11-14_08-58-09/TPM.blib
14 Nov 2024 21:23:42,114 DEBUG: Created symlink /data/labkey/files/U of Virginia - Sheynkman Lab/JPR_manuscript_November2024/@files/240502_LysC_Azide_Analysis_EDJ_2024-11-14_08-58-09/TPM.blib targeting /data/labkey/files/Panorama Public/2024/U of Virginia Sheynkman Lab - JPR_manuscript_November2024/@files/240502_LysC_Azide_Analysis_EDJ_2024-11-14_08-58-09/TPM.blib
14 Nov 2024 21:23:42,115 DEBUG: Moved file /data/labkey/files/U of Virginia - Sheynkman Lab/JPR_manuscript_November2024/@files/240502_LysC_Azide_Analysis_EDJ_2024-11-14_08-58-09/240502_LysC_Azide_Analysis_EDJ.sky to /data/labkey/files/Panorama Public/2024/U of Virginia Sheynkman Lab - JPR_manuscript_November2024/@files/240502_LysC_Azide_Analysis_EDJ_2024-11-14_08-58-09/240502_LysC_Azide_Analysis_EDJ.sky
14 Nov 2024 21:23:42,116 DEBUG: Created symlink /data/labkey/files/U of Virginia - Sheynkman Lab/JPR_manuscript_November2024/@files/240502_LysC_Azide_Analysis_EDJ_2024-11-14_08-58-09/240502_LysC_Azide_Analysis_EDJ.sky targeting /data/labkey/files/Panorama Public/2024/U of Virginia Sheynkman Lab - JPR_manuscript_November2024/@files/240502_LysC_Azide_Analysis_EDJ_2024-11-14_08-58-09/240502_LysC_Azide_Analysis_EDJ.sky
14 Nov 2024 21:23:42,117 DEBUG: Moved file /data/labkey/files/U of Virginia - Sheynkman Lab/JPR_manuscript_November2024/@files/240502_LysC_Azide_Analysis_EDJ_2024-11-14_08-58-09/240502_LysC_Azide_Analysis_EDJ.sky.view to /data/labkey/files/Panorama Public/2024/U of Virginia Sheynkman Lab - JPR_manuscript_November2024/@files/240502_LysC_Azide_Analysis_EDJ_2024-11-14_08-58-09/240502_LysC_Azide_Analysis_EDJ.sky.view
14 Nov 2024 21:23:42,118 DEBUG: Created symlink /data/labkey/files/U of Virginia - Sheynkman Lab/JPR_manuscript_November2024/@files/240502_LysC_Azide_Analysis_EDJ_2024-11-14_08-58-09/240502_LysC_Azide_Analysis_EDJ.sky.view targeting /data/labkey/files/Panorama Public/2024/U of Virginia Sheynkman Lab - JPR_manuscript_November2024/@files/240502_LysC_Azide_Analysis_EDJ_2024-11-14_08-58-09/240502_LysC_Azide_Analysis_EDJ.sky.view
14 Nov 2024 21:23:42,119 DEBUG: Moved file /data/labkey/files/U of Virginia - Sheynkman Lab/JPR_manuscript_November2024/@files/240502_LysC_Azide_Analysis_EDJ_2024-11-14_08-58-09/240502_LysC_Azide_Analysis_EDJ.skyl to /data/labkey/files/Panorama Public/2024/U of Virginia Sheynkman Lab - JPR_manuscript_November2024/@files/240502_LysC_Azide_Analysis_EDJ_2024-11-14_08-58-09/240502_LysC_Azide_Analysis_EDJ.skyl
14 Nov 2024 21:23:42,119 DEBUG: Created symlink /data/labkey/files/U of Virginia - Sheynkman Lab/JPR_manuscript_November2024/@files/240502_LysC_Azide_Analysis_EDJ_2024-11-14_08-58-09/240502_LysC_Azide_Analysis_EDJ.skyl targeting /data/labkey/files/Panorama Public/2024/U of Virginia Sheynkman Lab - JPR_manuscript_November2024/@files/240502_LysC_Azide_Analysis_EDJ_2024-11-14_08-58-09/240502_LysC_Azide_Analysis_EDJ.skyl
14 Nov 2024 21:23:42,120 DEBUG: Directory created: /data/labkey/files/Panorama Public/2024/U of Virginia Sheynkman Lab - JPR_manuscript_November2024/@files/assaydata
14 Nov 2024 21:23:42,120 INFO : Aligning data files urls in folder: /Panorama Public/2024/U of Virginia Sheynkman Lab - JPR_manuscript_November2024
14 Nov 2024 21:23:42,122 DEBUG: Setting filePathRoot on copied run: 240502_LysC_Azide_Analysis_EDJ_2024-11-14_08-58-09.sky.zip to: /data/labkey/files/Panorama Public/2024/U of Virginia Sheynkman Lab - JPR_manuscript_November2024/@files
14 Nov 2024 21:23:42,124 DEBUG: Setting dataFileUri on copied data: 240502_LysC_Azide_Analysis_EDJ_2024-11-14_08-58-09.sky.zip to: /data/labkey/files/Panorama Public/2024/U of Virginia Sheynkman Lab - JPR_manuscript_November2024/@files/240502_LysC_Azide_Analysis_EDJ_2024-11-14_08-58-09.sky.zip
14 Nov 2024 21:23:42,126 DEBUG: Setting dataFileUri on copied data: 240502_LysC_Azide_Analysis_EDJ.skyd to: /data/labkey/files/Panorama Public/2024/U of Virginia Sheynkman Lab - JPR_manuscript_November2024/@files/240502_LysC_Azide_Analysis_EDJ_2024-11-14_08-58-09/240502_LysC_Azide_Analysis_EDJ.skyd
14 Nov 2024 21:23:42,126 INFO : Importing files metadata.
14 Nov 2024 21:23:42,126 DEBUG: [/Panorama Public/2024/U of Virginia Sheynkman Lab - JPR_manuscript_November2024]  Reading files metadata from /data/labkey/files/Panorama Public/2024/U of Virginia Sheynkman Lab - JPR_manuscript_November2024/@files/export
14 Nov 2024 21:23:42,129 INFO : 
14 Nov 2024 21:23:42,130 INFO : Experiment import completed successfully.
14 Nov 2024 21:23:42,130 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
14 Nov 2024 21:23:42,152 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
14 Nov 2024 21:23:42,152 INFO : 
14 Nov 2024 21:23:42,152 INFO : Checking for library folders.
14 Nov 2024 21:23:42,153 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
14 Nov 2024 21:23:42,171 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
14 Nov 2024 21:23:42,171 INFO : 
14 Nov 2024 21:23:42,171 INFO : Finishing up experiment copy.
14 Nov 2024 21:23:42,172 INFO : Updating TargetedMS experiment entry in target folder /Panorama Public/2024/U of Virginia Sheynkman Lab - JPR_manuscript_November2024
14 Nov 2024 21:23:42,173 INFO : Setting version on new experiment to 1
14 Nov 2024 21:23:42,175 INFO : Updating permanent link to point to the new copy of the data.
14 Nov 2024 21:23:42,216 INFO : Removing copy permissions given to Panorama Public
14 Nov 2024 21:23:42,218 INFO : Adding read permissions to all users that are folder admins in the source folder.
14 Nov 2024 21:23:42,219 INFO : Assigning ReaderRole to edf4n@virginia.edu
14 Nov 2024 21:23:42,219 INFO : Assigning PanoramaPublicSubmitterRole to edf4n@virginia.edu
14 Nov 2024 21:23:42,223 INFO : Adding user edf4n@virginia.edu to group Panorama Public Submitters
14 Nov 2024 21:23:42,224 INFO : Updating the 'Raw Data' tab configuration
14 Nov 2024 21:23:42,226 INFO : Creating a reviewer account.
14 Nov 2024 21:23:42,268 INFO : Created reviewer with email: panorama+reviewer301@proteinms.net
14 Nov 2024 21:23:42,268 INFO : Generating password.
14 Nov 2024 21:23:42,406 INFO : Set reviewer password successfully.
14 Nov 2024 21:23:42,409 INFO : Adding user panorama+reviewer301@proteinms.net to group Reviewers
14 Nov 2024 21:23:42,410 INFO : Hiding the Data Pipeline tab.
14 Nov 2024 21:23:42,412 INFO : Updating Submission. Setting copiedExperimentId to 1938
14 Nov 2024 21:23:43,641 INFO : Assigning a ProteomeXchange ID.
14 Nov 2024 21:23:44,290 INFO : Assigned ProteomeXchange ID: PXD057918
14 Nov 2024 21:23:44,290 INFO : Assigning a DOI.
14 Nov 2024 21:23:45,008 INFO : Assigned DOI: 10.6069/mrkx-td78
14 Nov 2024 21:23:45,112 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'