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Validating data for experiment Id: 1919, validation Id: 1147

U of New South Wales Wilkins Lab - RPL40 methyltransferase discovery and characterisation

Job Status

Created: 2024-10-03 10:52:03
Modified: 2024-10-03 10:52:04
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Validating data for experiment Id: 1919, validation Id: 1147
File Path: /data/labkey/files/Panorama Public/2024/U of New South Wales Wilkins Lab - RPL40 methyltransferase discovery and characterisation/@files/Experiment_Validation_2010_2024-10-03_10-52-02.log
Files: Experiment_Validation_2010_2024-10-03_10-52-02.log
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Log File


03 Oct 2024 10:52:03,667 INFO : Validating data for a ProteomeXchange submission.
03 Oct 2024 10:52:03,668 INFO : =======================================
03 Oct 2024 10:52:03,705 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.PxDataValidationTask' at location 'webserver'
03 Oct 2024 10:52:03,706 INFO : Validating data for experiment Id: 1919, validation Id: 1147
03 Oct 2024 10:52:03,753 INFO : Validating data for 21 Skyline documents in 2 folders
03 Oct 2024 10:52:03,757 INFO : Sample file validation for Skyline document: RPL40_K22_hmSILAC_PRM.sky.zip
03 Oct 2024 10:52:03,757 INFO :   Found all sample files.
03 Oct 2024 10:52:03,761 INFO : Sample file validation for Skyline document: RPL40_lysate_pooledSECfractions_methylation_assay.sky.zip
03 Oct 2024 10:52:03,761 INFO :   Found all sample files.
03 Oct 2024 10:52:03,767 INFO : Sample file validation for Skyline document: RPL40_individual_fraction_methylation_assay_PRM.sky.zip
03 Oct 2024 10:52:03,767 INFO :   Found all sample files.
03 Oct 2024 10:52:03,770 INFO : Sample file validation for Skyline document: SMYD5_RPL40_methylation_assay.sky.zip
03 Oct 2024 10:52:03,770 INFO :   Found all sample files.
03 Oct 2024 10:52:03,780 INFO : Sample file validation for Skyline document: SMYD5_mutant_assay_PRM.sky.zip
03 Oct 2024 10:52:03,780 INFO :   Found all sample files.
03 Oct 2024 10:52:03,785 INFO : Sample file validation for Skyline document: SMYD5_delta384-418_assay_PRM_2024-10-02_10-51-37.sky.zip
03 Oct 2024 10:52:03,786 INFO :   Found all sample files.
03 Oct 2024 10:52:03,790 INFO : Sample file validation for Skyline document: SMYD5_KO_RPL40K22_PRM_2024-10-02_10-58-36.sky.zip
03 Oct 2024 10:52:03,790 INFO :   Found all sample files.
03 Oct 2024 10:52:03,806 INFO : Sample file validation for Skyline document: RPL40_individual_fraction_methylation_assay_allfractions_2024-10-02_11-40-38.sky.zip
03 Oct 2024 10:52:03,806 INFO :   Found all sample files.
03 Oct 2024 10:52:03,809 INFO : Sample file validation for Skyline document: H4_SMYD5_assay_with_propionylation_2024-10-02_11-45-55.sky.zip
03 Oct 2024 10:52:03,809 INFO :   Found all sample files.
03 Oct 2024 10:52:03,813 INFO : Sample file validation for Skyline document: RPL40_SMYD5_assay_with_propionylation_2024-10-02_11-46-31.sky.zip
03 Oct 2024 10:52:03,813 INFO :   Found all sample files.
03 Oct 2024 10:52:03,815 INFO : Sample file validation for Skyline document: H3_SMYD5_assay_with_propionylation_2024-10-02_11-48-27.sky.zip
03 Oct 2024 10:52:03,815 INFO :   Found all sample files.
03 Oct 2024 10:52:03,819 INFO : Sample file validation for Skyline document: RPL40K22_SMYD5_assay_2024-10-02_13-08-16.sky.zip
03 Oct 2024 10:52:03,819 INFO :   Found all sample files.
03 Oct 2024 10:52:03,823 INFO : Sample file validation for Skyline document: RPL40K22_SMYD5_assay_triplicate_2024-10-02_13-09-21.sky.zip
03 Oct 2024 10:52:03,823 INFO :   Found all sample files.
03 Oct 2024 10:52:03,827 INFO : Sample file validation for Skyline document: H3K36_SMYD5_assay_2024-10-02_13-11-00.sky.zip
03 Oct 2024 10:52:03,827 INFO :   Found all sample files.
03 Oct 2024 10:52:03,831 INFO : Sample file validation for Skyline document: H4K20_SMYD5_assay_2024-10-02_13-11-27.sky.zip
03 Oct 2024 10:52:03,831 INFO :   Found all sample files.
03 Oct 2024 10:52:03,837 INFO : Sample file validation for Skyline document: I19X_2024-10-01_17-12-46.sky.zip
03 Oct 2024 10:52:03,837 INFO :   Found all sample files.
03 Oct 2024 10:52:03,840 INFO : Sample file validation for Skyline document: C20X_2024-10-01_17-14-25.sky.zip
03 Oct 2024 10:52:03,840 INFO :   Found all sample files.
03 Oct 2024 10:52:03,844 INFO : Sample file validation for Skyline document: R21X_2024-10-01_17-15-05.sky.zip
03 Oct 2024 10:52:03,844 INFO :   Found all sample files.
03 Oct 2024 10:52:03,848 INFO : Sample file validation for Skyline document: C23X_2024-10-01_17-15-44.sky.zip
03 Oct 2024 10:52:03,848 INFO :   Found all sample files.
03 Oct 2024 10:52:03,852 INFO : Sample file validation for Skyline document: Y24X_2024-10-01_17-16-10.sky.zip
03 Oct 2024 10:52:03,852 INFO :   Found all sample files.
03 Oct 2024 10:52:03,855 INFO : Sample file validation for Skyline document: A25X_2024-10-01_17-16-38.sky.zip
03 Oct 2024 10:52:03,856 INFO :   Found all sample files.
03 Oct 2024 10:52:04,033 INFO : Modifications validation:
03 Oct 2024 10:52:04,033 INFO : VALID MODIFICATIONS:
03 Oct 2024 10:52:04,033 INFO : 7185: Trimethyl (K): UNIMOD:37 - Trimethyl
03 Oct 2024 10:52:04,033 INFO :     RPL40_K22_hmSILAC_PRM.sky.zip
03 Oct 2024 10:52:04,033 INFO : 7186: Methyl-D3 (K): 
03 Oct 2024 10:52:04,033 INFO :     H4K20_SMYD5_assay_2024-10-02_13-11-27.sky.zip
03 Oct 2024 10:52:04,033 INFO :     H3K36_SMYD5_assay_2024-10-02_13-11-00.sky.zip
03 Oct 2024 10:52:04,033 INFO :     RPL40K22_SMYD5_assay_triplicate_2024-10-02_13-09-21.sky.zip
03 Oct 2024 10:52:04,033 INFO :     RPL40K22_SMYD5_assay_2024-10-02_13-08-16.sky.zip
03 Oct 2024 10:52:04,033 INFO :     C23X_2024-10-01_17-15-44.sky.zip
03 Oct 2024 10:52:04,033 INFO :     R21X_2024-10-01_17-15-05.sky.zip
03 Oct 2024 10:52:04,033 INFO :     C20X_2024-10-01_17-14-25.sky.zip
03 Oct 2024 10:52:04,033 INFO :     I19X_2024-10-01_17-12-46.sky.zip
03 Oct 2024 10:52:04,034 INFO :     A25X_2024-10-01_17-16-38.sky.zip
03 Oct 2024 10:52:04,034 INFO :     Y24X_2024-10-01_17-16-10.sky.zip
03 Oct 2024 10:52:04,034 INFO :     RPL40_individual_fraction_methylation_assay_PRM.sky.zip
03 Oct 2024 10:52:04,034 INFO :     RPL40_lysate_pooledSECfractions_methylation_assay.sky.zip
03 Oct 2024 10:52:04,034 INFO :     SMYD5_RPL40_methylation_assay.sky.zip
03 Oct 2024 10:52:04,034 INFO :     RPL40_individual_fraction_methylation_assay_allfractions_2024-10-02_11-40-38.sky.zip
03 Oct 2024 10:52:04,034 INFO : 7187: Dimethyl-D3 (K): 
03 Oct 2024 10:52:04,034 INFO :     H4K20_SMYD5_assay_2024-10-02_13-11-27.sky.zip
03 Oct 2024 10:52:04,034 INFO :     H3K36_SMYD5_assay_2024-10-02_13-11-00.sky.zip
03 Oct 2024 10:52:04,034 INFO :     RPL40K22_SMYD5_assay_triplicate_2024-10-02_13-09-21.sky.zip
03 Oct 2024 10:52:04,034 INFO :     RPL40K22_SMYD5_assay_2024-10-02_13-08-16.sky.zip
03 Oct 2024 10:52:04,034 INFO :     C23X_2024-10-01_17-15-44.sky.zip
03 Oct 2024 10:52:04,034 INFO :     R21X_2024-10-01_17-15-05.sky.zip
03 Oct 2024 10:52:04,034 INFO :     C20X_2024-10-01_17-14-25.sky.zip
03 Oct 2024 10:52:04,034 INFO :     I19X_2024-10-01_17-12-46.sky.zip
03 Oct 2024 10:52:04,034 INFO :     A25X_2024-10-01_17-16-38.sky.zip
03 Oct 2024 10:52:04,034 INFO :     Y24X_2024-10-01_17-16-10.sky.zip
03 Oct 2024 10:52:04,034 INFO :     RPL40_individual_fraction_methylation_assay_PRM.sky.zip
03 Oct 2024 10:52:04,034 INFO :     RPL40_lysate_pooledSECfractions_methylation_assay.sky.zip
03 Oct 2024 10:52:04,034 INFO :     SMYD5_delta384-418_assay_PRM_2024-10-02_10-51-37.sky.zip
03 Oct 2024 10:52:04,034 INFO :     SMYD5_mutant_assay_PRM.sky.zip
03 Oct 2024 10:52:04,034 INFO :     SMYD5_RPL40_methylation_assay.sky.zip
03 Oct 2024 10:52:04,034 INFO :     H3_SMYD5_assay_with_propionylation_2024-10-02_11-48-27.sky.zip
03 Oct 2024 10:52:04,034 INFO :     RPL40_SMYD5_assay_with_propionylation_2024-10-02_11-46-31.sky.zip
03 Oct 2024 10:52:04,034 INFO :     H4_SMYD5_assay_with_propionylation_2024-10-02_11-45-55.sky.zip
03 Oct 2024 10:52:04,034 INFO :     RPL40_individual_fraction_methylation_assay_allfractions_2024-10-02_11-40-38.sky.zip
03 Oct 2024 10:52:04,034 INFO : 7188: Trimethyl-D3 (K): 
03 Oct 2024 10:52:04,035 INFO :     H4K20_SMYD5_assay_2024-10-02_13-11-27.sky.zip
03 Oct 2024 10:52:04,035 INFO :     H3K36_SMYD5_assay_2024-10-02_13-11-00.sky.zip
03 Oct 2024 10:52:04,035 INFO :     RPL40K22_SMYD5_assay_triplicate_2024-10-02_13-09-21.sky.zip
03 Oct 2024 10:52:04,035 INFO :     RPL40K22_SMYD5_assay_2024-10-02_13-08-16.sky.zip
03 Oct 2024 10:52:04,035 INFO :     C23X_2024-10-01_17-15-44.sky.zip
03 Oct 2024 10:52:04,035 INFO :     R21X_2024-10-01_17-15-05.sky.zip
03 Oct 2024 10:52:04,035 INFO :     C20X_2024-10-01_17-14-25.sky.zip
03 Oct 2024 10:52:04,035 INFO :     I19X_2024-10-01_17-12-46.sky.zip
03 Oct 2024 10:52:04,035 INFO :     A25X_2024-10-01_17-16-38.sky.zip
03 Oct 2024 10:52:04,035 INFO :     Y24X_2024-10-01_17-16-10.sky.zip
03 Oct 2024 10:52:04,035 INFO :     RPL40_individual_fraction_methylation_assay_PRM.sky.zip
03 Oct 2024 10:52:04,035 INFO :     RPL40_lysate_pooledSECfractions_methylation_assay.sky.zip
03 Oct 2024 10:52:04,035 INFO :     SMYD5_delta384-418_assay_PRM_2024-10-02_10-51-37.sky.zip
03 Oct 2024 10:52:04,035 INFO :     SMYD5_mutant_assay_PRM.sky.zip
03 Oct 2024 10:52:04,035 INFO :     SMYD5_RPL40_methylation_assay.sky.zip
03 Oct 2024 10:52:04,035 INFO :     H3_SMYD5_assay_with_propionylation_2024-10-02_11-48-27.sky.zip
03 Oct 2024 10:52:04,035 INFO :     RPL40_SMYD5_assay_with_propionylation_2024-10-02_11-46-31.sky.zip
03 Oct 2024 10:52:04,035 INFO :     H4_SMYD5_assay_with_propionylation_2024-10-02_11-45-55.sky.zip
03 Oct 2024 10:52:04,035 INFO :     RPL40_individual_fraction_methylation_assay_allfractions_2024-10-02_11-40-38.sky.zip
03 Oct 2024 10:52:04,035 INFO : 7189: Carbamidomethyl (C) with neutral loss: 
03 Oct 2024 10:52:04,035 INFO :     RPL40_K22_hmSILAC_PRM.sky.zip
03 Oct 2024 10:52:04,035 INFO : 7190: Propionyl: 
03 Oct 2024 10:52:04,035 INFO :     SMYD5_KO_RPL40K22_PRM_2024-10-02_10-58-36.sky.zip
03 Oct 2024 10:52:04,035 INFO :     SMYD5_delta384-418_assay_PRM_2024-10-02_10-51-37.sky.zip
03 Oct 2024 10:52:04,035 INFO :     SMYD5_mutant_assay_PRM.sky.zip
03 Oct 2024 10:52:04,035 INFO :     H3_SMYD5_assay_with_propionylation_2024-10-02_11-48-27.sky.zip
03 Oct 2024 10:52:04,035 INFO :     RPL40_SMYD5_assay_with_propionylation_2024-10-02_11-46-31.sky.zip
03 Oct 2024 10:52:04,035 INFO :     H4_SMYD5_assay_with_propionylation_2024-10-02_11-45-55.sky.zip
03 Oct 2024 10:52:04,035 INFO : 7191: Trimethyl-CD3 (K): 
03 Oct 2024 10:52:04,036 INFO :     RPL40_K22_hmSILAC_PRM.sky.zip
03 Oct 2024 10:52:04,036 INFO : 7192: Propionyl+Methyl-D3 (K): 
03 Oct 2024 10:52:04,036 INFO :     SMYD5_delta384-418_assay_PRM_2024-10-02_10-51-37.sky.zip
03 Oct 2024 10:52:04,036 INFO :     SMYD5_mutant_assay_PRM.sky.zip
03 Oct 2024 10:52:04,036 INFO :     H3_SMYD5_assay_with_propionylation_2024-10-02_11-48-27.sky.zip
03 Oct 2024 10:52:04,036 INFO :     RPL40_SMYD5_assay_with_propionylation_2024-10-02_11-46-31.sky.zip
03 Oct 2024 10:52:04,036 INFO :     H4_SMYD5_assay_with_propionylation_2024-10-02_11-45-55.sky.zip
03 Oct 2024 10:52:04,036 INFO : 7193: Trimethyl (K): 
03 Oct 2024 10:52:04,036 INFO :     SMYD5_KO_RPL40K22_PRM_2024-10-02_10-58-36.sky.zip
03 Oct 2024 10:52:04,036 INFO : 7194: Propionyl+methyl (K): 
03 Oct 2024 10:52:04,036 INFO :     SMYD5_KO_RPL40K22_PRM_2024-10-02_10-58-36.sky.zip
03 Oct 2024 10:52:04,036 INFO : 7195: Dimethyl (K): UNIMOD:36 - Dimethyl
03 Oct 2024 10:52:04,036 INFO :     SMYD5_KO_RPL40K22_PRM_2024-10-02_10-58-36.sky.zip
03 Oct 2024 10:52:04,036 INFO : 7196: Carbamidomethyl (C): UNIMOD:4 - Carbamidomethyl
03 Oct 2024 10:52:04,036 INFO :     RPL40K22_SMYD5_assay_triplicate_2024-10-02_13-09-21.sky.zip
03 Oct 2024 10:52:04,036 INFO :     RPL40K22_SMYD5_assay_2024-10-02_13-08-16.sky.zip
03 Oct 2024 10:52:04,036 INFO :     C23X_2024-10-01_17-15-44.sky.zip
03 Oct 2024 10:52:04,036 INFO :     R21X_2024-10-01_17-15-05.sky.zip
03 Oct 2024 10:52:04,036 INFO :     C20X_2024-10-01_17-14-25.sky.zip
03 Oct 2024 10:52:04,036 INFO :     I19X_2024-10-01_17-12-46.sky.zip
03 Oct 2024 10:52:04,036 INFO :     A25X_2024-10-01_17-16-38.sky.zip
03 Oct 2024 10:52:04,036 INFO :     Y24X_2024-10-01_17-16-10.sky.zip
03 Oct 2024 10:52:04,036 INFO :     RPL40_individual_fraction_methylation_assay_PRM.sky.zip
03 Oct 2024 10:52:04,036 INFO :     RPL40_lysate_pooledSECfractions_methylation_assay.sky.zip
03 Oct 2024 10:52:04,036 INFO :     SMYD5_KO_RPL40K22_PRM_2024-10-02_10-58-36.sky.zip
03 Oct 2024 10:52:04,036 INFO :     SMYD5_delta384-418_assay_PRM_2024-10-02_10-51-37.sky.zip
03 Oct 2024 10:52:04,036 INFO :     SMYD5_mutant_assay_PRM.sky.zip
03 Oct 2024 10:52:04,036 INFO :     SMYD5_RPL40_methylation_assay.sky.zip
03 Oct 2024 10:52:04,036 INFO :     RPL40_SMYD5_assay_with_propionylation_2024-10-02_11-46-31.sky.zip
03 Oct 2024 10:52:04,037 INFO :     RPL40_individual_fraction_methylation_assay_allfractions_2024-10-02_11-40-38.sky.zip
03 Oct 2024 10:52:04,037 INFO : 7197: Oxidation (M): 
03 Oct 2024 10:52:04,037 INFO :     RPL40_individual_fraction_methylation_assay_PRM.sky.zip
03 Oct 2024 10:52:04,037 INFO :     RPL40_lysate_pooledSECfractions_methylation_assay.sky.zip
03 Oct 2024 10:52:04,037 INFO :     SMYD5_RPL40_methylation_assay.sky.zip
03 Oct 2024 10:52:04,037 INFO :     RPL40_individual_fraction_methylation_assay_allfractions_2024-10-02_11-40-38.sky.zip
03 Oct 2024 10:52:04,037 INFO : INVALID MODIFICATIONS (No Unimod ID):
03 Oct 2024 10:52:04,038 INFO : Skyline documents in the experiment do not contain any spectral libraries.
03 Oct 2024 10:52:04,038 INFO : Spectral library validation complete.
03 Oct 2024 10:52:04,038 INFO : Data validation is complete. Status is Complete
03 Oct 2024 10:52:04,038 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.PxDataValidationTask'