Copying experiment: RPL40 methyltransferase discovery and characterisation

U of New South Wales Wilkins Lab - RPL40 methyltransferase discovery and characterisation

Job Status

Created: 2024-10-03 10:43:28
Modified: 2024-10-03 10:44:07
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Copying experiment: RPL40 methyltransferase discovery and characterisation
File Path: /data/labkey/files/Panorama Public/2024/U of New South Wales Wilkins Lab - RPL40 methyltransferase discovery and characterisation/@files/Experiment_2009.log
Files: Experiment_2009.log
Completed Runs: R21X
H3_SMYD5_assay_with_propionylation
C20X
Y24X
RPL40_individual_fraction_methylation_assay_PRM
I19X
C23X
RPL40_K22_hmSILAC_PRM
A25X
RPL40_lysate_pooledSECfractions_methylation_assay
SMYD5_RPL40_methylation_assay
SMYD5_delta384-418_assay_PRM
SMYD5_mutant_assay_PRM
SMYD5_KO_RPL40K22_PRM
H4_SMYD5_assay_with_propionylation
RPL40_individual_fraction_methylation_assay_allfractions
RPL40_SMYD5_assay_with_propionylation
RPL40K22_SMYD5_assay
RPL40K22_SMYD5_assay_triplicate
H3K36_SMYD5_assay
H4K20_SMYD5_assay

Log File


03 Oct 2024 10:43:28,569 INFO : Copying experiment "RPL40 methyltransferase discovery and characterisation" from folder /U of New South Wales - Wilkins Lab/RPL40 methyltransferase discovery and characterisation to /Panorama Public/2024/U of New South Wales Wilkins Lab - RPL40 methyltransferase discovery and characterisation
03 Oct 2024 10:43:28,570 INFO : =======================================
03 Oct 2024 10:43:28,619 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
03 Oct 2024 10:43:28,619 INFO :
03 Oct 2024 10:43:28,619 INFO : Exporting experiment.
03 Oct 2024 10:43:40,952 INFO : Exporting files metadata.
03 Oct 2024 10:43:41,000 INFO :
03 Oct 2024 10:43:41,000 INFO : Experiment export completed successfully.
03 Oct 2024 10:43:41,000 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
03 Oct 2024 10:43:41,026 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
03 Oct 2024 10:43:41,026 INFO :
03 Oct 2024 10:43:41,026 INFO : Importing experiment.
03 Oct 2024 10:43:41,029 INFO : Loading folder properties (folder type, settings and active modules)
03 Oct 2024 10:43:41,119 INFO : Done importing folder properties (folder type, settings and active modules)
03 Oct 2024 10:43:41,120 INFO : Loading container specific module properties
03 Oct 2024 10:43:41,124 INFO : Done importing container specific module properties
03 Oct 2024 10:43:41,125 INFO : Loading queries
03 Oct 2024 10:43:41,128 INFO : 1 query imported
03 Oct 2024 10:43:41,129 INFO : Done importing queries
03 Oct 2024 10:43:41,130 INFO : Loading etl definitions
03 Oct 2024 10:43:41,131 INFO : Loading wikis
03 Oct 2024 10:43:41,132 INFO : 0 wikis imported
03 Oct 2024 10:43:41,132 INFO : Done importing wikis
03 Oct 2024 10:43:41,133 INFO : Starting Data Class Importer
03 Oct 2024 10:43:41,133 INFO : No types XAR file to process.
03 Oct 2024 10:43:41,133 INFO : Finished Data Class Importer
03 Oct 2024 10:43:41,134 INFO : Starting to copy files
03 Oct 2024 10:43:41,134 INFO : Copied 0 files
03 Oct 2024 10:43:41,134 INFO : Ensuring exp.data rows exist for imported files
03 Oct 2024 10:43:41,271 INFO : Starting Sample Type Importer
03 Oct 2024 10:43:41,271 INFO : No types XAR file to process.
03 Oct 2024 10:43:41,271 INFO : Finished Sample Type Importer
03 Oct 2024 10:43:41,273 INFO : Loading xar
03 Oct 2024 10:43:41,948 INFO : Starting import from RPL40_K22_hmSILAC_PRM.sky.zip
03 Oct 2024 10:43:41,951 INFO : Starting to import Skyline document from RPL40_K22_hmSILAC_PRM.sky.zip
03 Oct 2024 10:43:41,952 INFO : Expanding RPL40_K22_hmSILAC_PRM.skyd
03 Oct 2024 10:43:41,958 INFO : Expanding RPL40_K22_hmSILAC_PRM.sky.view
03 Oct 2024 10:43:41,959 INFO : Expanding RPL40_K22_hmSILAC_PRM.sky
03 Oct 2024 10:43:41,960 INFO : Expanding RPL40_K22_hmSILAC_PRM.skyl
03 Oct 2024 10:43:41,961 INFO : Reading Skyline file, RPL40_K22_hmSILAC_PRM.sky, to determine if the TransitionChromInfos in the document should be stored...
03 Oct 2024 10:43:41,962 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
03 Oct 2024 10:43:41,963 INFO : 13% Done
03 Oct 2024 10:43:42,138 INFO : Inserting peptides1
03 Oct 2024 10:43:42,143 INFO : 61% Done
03 Oct 2024 10:43:42,169 INFO : 98% Done
03 Oct 2024 10:43:42,188 INFO : Done parsing Skyline document.
03 Oct 2024 10:43:42,209 INFO : Creating and populating temp tables for Proportion values
03 Oct 2024 10:43:42,215 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
03 Oct 2024 10:43:42,216 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
03 Oct 2024 10:43:42,217 INFO : Cleaning up temp tables
03 Oct 2024 10:43:42,528 INFO : Completed import of Skyline document from RPL40_K22_hmSILAC_PRM.sky.zip
03 Oct 2024 10:43:42,530 INFO : 100% Done
03 Oct 2024 10:43:42,535 INFO : Starting import from RPL40_lysate_pooledSECfractions_methylation_assay.sky.zip
03 Oct 2024 10:43:42,537 INFO : Starting to import Skyline document from RPL40_lysate_pooledSECfractions_methylation_assay.sky.zip
03 Oct 2024 10:43:42,538 INFO : Expanding RPL40_lysate_pooledSECfractions_methylation_assay.skyd
03 Oct 2024 10:43:42,553 INFO : Expanding RPL40_lysate_pooledSECfractions_methylation_assay.sky.view
03 Oct 2024 10:43:42,553 INFO : Expanding RPL40_lysate_pooledSECfractions_methylation_assay.sky
03 Oct 2024 10:43:42,554 INFO : Expanding RPL40_lysate_pooledSECfractions_methylation_assay.skyl
03 Oct 2024 10:43:42,555 INFO : Reading Skyline file, RPL40_lysate_pooledSECfractions_methylation_assay.sky, to determine if the TransitionChromInfos in the document should be stored...
03 Oct 2024 10:43:42,565 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
03 Oct 2024 10:43:42,568 INFO : 5% Done
03 Oct 2024 10:43:42,785 INFO : Inserting peptides1
03 Oct 2024 10:43:42,791 INFO : 24% Done
03 Oct 2024 10:43:42,832 INFO : 40% Done
03 Oct 2024 10:43:42,858 INFO : 58% Done
03 Oct 2024 10:43:42,893 INFO : 98% Done
03 Oct 2024 10:43:42,924 INFO : Done parsing Skyline document.
03 Oct 2024 10:43:42,948 INFO : Creating and populating temp tables for Proportion values
03 Oct 2024 10:43:42,953 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
03 Oct 2024 10:43:42,953 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
03 Oct 2024 10:43:42,954 INFO : Cleaning up temp tables
03 Oct 2024 10:43:43,344 INFO : Completed import of Skyline document from RPL40_lysate_pooledSECfractions_methylation_assay.sky.zip
03 Oct 2024 10:43:43,346 INFO : 100% Done
03 Oct 2024 10:43:43,352 INFO : Starting import from RPL40_individual_fraction_methylation_assay_PRM.sky.zip
03 Oct 2024 10:43:43,354 INFO : Starting to import Skyline document from RPL40_individual_fraction_methylation_assay_PRM.sky.zip
03 Oct 2024 10:43:43,354 INFO : Expanding RPL40_individual_fraction_methylation_assay_PRM.skyd
03 Oct 2024 10:43:43,401 INFO : Expanding RPL40_individual_fraction_methylation_assay_PRM.sky.view
03 Oct 2024 10:43:43,402 INFO : Expanding RPL40_individual_fraction_methylation_assay_PRM.sky
03 Oct 2024 10:43:43,403 INFO : Expanding RPL40_individual_fraction_methylation_assay_PRM.skyl
03 Oct 2024 10:43:43,404 INFO : Reading Skyline file, RPL40_individual_fraction_methylation_assay_PRM.sky, to determine if the TransitionChromInfos in the document should be stored...
03 Oct 2024 10:43:43,407 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
03 Oct 2024 10:43:43,410 INFO : 5% Done
03 Oct 2024 10:43:43,579 INFO : Inserting peptides1
03 Oct 2024 10:43:43,587 INFO : 24% Done
03 Oct 2024 10:43:43,615 INFO : 43% Done
03 Oct 2024 10:43:43,643 INFO : 62% Done
03 Oct 2024 10:43:43,688 INFO : 98% Done
03 Oct 2024 10:43:43,725 INFO : Done parsing Skyline document.
03 Oct 2024 10:43:43,749 INFO : Creating and populating temp tables for Proportion values
03 Oct 2024 10:43:43,755 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
03 Oct 2024 10:43:43,756 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
03 Oct 2024 10:43:43,757 INFO : Cleaning up temp tables
03 Oct 2024 10:43:44,041 INFO : Completed import of Skyline document from RPL40_individual_fraction_methylation_assay_PRM.sky.zip
03 Oct 2024 10:43:44,043 INFO : 100% Done
03 Oct 2024 10:43:44,047 INFO : Starting import from SMYD5_RPL40_methylation_assay.sky.zip
03 Oct 2024 10:43:44,049 INFO : Starting to import Skyline document from SMYD5_RPL40_methylation_assay.sky.zip
03 Oct 2024 10:43:44,050 INFO : Expanding SMYD5_RPL40_methylation_assay.skyd
03 Oct 2024 10:43:44,055 INFO : Expanding SMYD5_RPL40_methylation_assay.sky.view
03 Oct 2024 10:43:44,056 INFO : Expanding SMYD5_RPL40_methylation_assay.sky
03 Oct 2024 10:43:44,057 INFO : Expanding SMYD5_RPL40_methylation_assay.skyl
03 Oct 2024 10:43:44,058 INFO : Reading Skyline file, SMYD5_RPL40_methylation_assay.sky, to determine if the TransitionChromInfos in the document should be stored...
03 Oct 2024 10:43:44,059 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
03 Oct 2024 10:43:44,062 INFO : 6% Done
03 Oct 2024 10:43:44,213 INFO : Inserting peptides1
03 Oct 2024 10:43:44,217 INFO : 24% Done
03 Oct 2024 10:43:44,236 INFO : 40% Done
03 Oct 2024 10:43:44,254 INFO : 56% Done
03 Oct 2024 10:43:44,279 INFO : 98% Done
03 Oct 2024 10:43:44,303 INFO : Done parsing Skyline document.
03 Oct 2024 10:43:44,327 INFO : Creating and populating temp tables for Proportion values
03 Oct 2024 10:43:44,331 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
03 Oct 2024 10:43:44,332 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
03 Oct 2024 10:43:44,332 INFO : Cleaning up temp tables
03 Oct 2024 10:43:44,621 INFO : Completed import of Skyline document from SMYD5_RPL40_methylation_assay.sky.zip
03 Oct 2024 10:43:44,623 INFO : 100% Done
03 Oct 2024 10:43:44,627 INFO : Starting import from SMYD5_mutant_assay_PRM.sky.zip
03 Oct 2024 10:43:44,629 INFO : Starting to import Skyline document from SMYD5_mutant_assay_PRM.sky.zip
03 Oct 2024 10:43:44,629 INFO : Expanding SMYD5_mutant_assay_PRM.skyd
03 Oct 2024 10:43:44,660 INFO : Expanding SMYD5_mutant_assay_PRM.sky.view
03 Oct 2024 10:43:44,661 INFO : Expanding SMYD5_mutant_assay_PRM.sky
03 Oct 2024 10:43:44,662 INFO : Expanding SMYD5_mutant_assay_PRM.skyl
03 Oct 2024 10:43:44,663 INFO : Reading Skyline file, SMYD5_mutant_assay_PRM.sky, to determine if the TransitionChromInfos in the document should be stored...
03 Oct 2024 10:43:44,664 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
03 Oct 2024 10:43:44,667 INFO : 7% Done
03 Oct 2024 10:43:44,818 INFO : Inserting peptides1
03 Oct 2024 10:43:44,828 INFO : 43% Done
03 Oct 2024 10:43:44,863 INFO : 63% Done
03 Oct 2024 10:43:44,903 INFO : 79% Done
03 Oct 2024 10:43:44,943 INFO : 98% Done
03 Oct 2024 10:43:44,974 INFO : Done parsing Skyline document.
03 Oct 2024 10:43:44,997 INFO : Creating and populating temp tables for Proportion values
03 Oct 2024 10:43:45,002 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
03 Oct 2024 10:43:45,004 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
03 Oct 2024 10:43:45,005 INFO : Cleaning up temp tables
03 Oct 2024 10:43:45,326 INFO : Completed import of Skyline document from SMYD5_mutant_assay_PRM.sky.zip
03 Oct 2024 10:43:45,331 INFO : 100% Done
03 Oct 2024 10:43:45,336 INFO : Starting import from SMYD5_delta384-418_assay_PRM_2024-10-02_10-51-37.sky.zip
03 Oct 2024 10:43:45,337 INFO : Starting to import Skyline document from SMYD5_delta384-418_assay_PRM_2024-10-02_10-51-37.sky.zip
03 Oct 2024 10:43:45,338 INFO : Expanding SMYD5_delta384-418_assay_PRM.skyd
03 Oct 2024 10:43:45,364 INFO : Expanding SMYD5_delta384-418_assay_PRM.sky.view
03 Oct 2024 10:43:45,365 INFO : Expanding SMYD5_delta384-418_assay_PRM.sky
03 Oct 2024 10:43:45,366 INFO : Expanding SMYD5_delta384-418_assay_PRM.skyl
03 Oct 2024 10:43:45,367 INFO : Reading Skyline file, SMYD5_delta384-418_assay_PRM.sky, to determine if the TransitionChromInfos in the document should be stored...
03 Oct 2024 10:43:45,369 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
03 Oct 2024 10:43:45,370 INFO : 5% Done
03 Oct 2024 10:43:45,529 INFO : Inserting peptides1
03 Oct 2024 10:43:45,538 INFO : 29% Done
03 Oct 2024 10:43:45,569 INFO : 52% Done
03 Oct 2024 10:43:45,601 INFO : 75% Done
03 Oct 2024 10:43:45,632 INFO : 98% Done
03 Oct 2024 10:43:45,655 INFO : Done parsing Skyline document.
03 Oct 2024 10:43:45,679 INFO : Creating and populating temp tables for Proportion values
03 Oct 2024 10:43:45,683 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
03 Oct 2024 10:43:45,684 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
03 Oct 2024 10:43:45,685 INFO : Cleaning up temp tables
03 Oct 2024 10:43:45,974 INFO : Completed import of Skyline document from SMYD5_delta384-418_assay_PRM_2024-10-02_10-51-37.sky.zip
03 Oct 2024 10:43:45,976 INFO : 100% Done
03 Oct 2024 10:43:45,980 INFO : Starting import from SMYD5_KO_RPL40K22_PRM_2024-10-02_10-58-36.sky.zip
03 Oct 2024 10:43:45,981 INFO : Starting to import Skyline document from SMYD5_KO_RPL40K22_PRM_2024-10-02_10-58-36.sky.zip
03 Oct 2024 10:43:45,982 INFO : Expanding SMYD5_KO_RPL40K22_PRM.skyd
03 Oct 2024 10:43:45,995 INFO : Expanding SMYD5_KO_RPL40K22_PRM.sky.view
03 Oct 2024 10:43:45,996 INFO : Expanding SMYD5_KO_RPL40K22_PRM.sky
03 Oct 2024 10:43:45,997 INFO : Expanding SMYD5_KO_RPL40K22_PRM.skyl
03 Oct 2024 10:43:45,998 INFO : Reading Skyline file, SMYD5_KO_RPL40K22_PRM.sky, to determine if the TransitionChromInfos in the document should be stored...
03 Oct 2024 10:43:45,999 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
03 Oct 2024 10:43:46,001 INFO : 7% Done
03 Oct 2024 10:43:46,147 INFO : Inserting peptides1
03 Oct 2024 10:43:46,153 INFO : 46% Done
03 Oct 2024 10:43:46,176 INFO : 63% Done
03 Oct 2024 10:43:46,196 INFO : 79% Done
03 Oct 2024 10:43:46,216 INFO : 98% Done
03 Oct 2024 10:43:46,237 INFO : Done parsing Skyline document.
03 Oct 2024 10:43:46,265 INFO : Creating and populating temp tables for Proportion values
03 Oct 2024 10:43:46,270 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
03 Oct 2024 10:43:46,271 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
03 Oct 2024 10:43:46,272 INFO : Cleaning up temp tables
03 Oct 2024 10:43:46,553 INFO : Completed import of Skyline document from SMYD5_KO_RPL40K22_PRM_2024-10-02_10-58-36.sky.zip
03 Oct 2024 10:43:46,555 INFO : 100% Done
03 Oct 2024 10:43:46,559 INFO : Starting import from RPL40_individual_fraction_methylation_assay_allfractions_2024-10-02_11-40-38.sky.zip
03 Oct 2024 10:43:46,561 INFO : Starting to import Skyline document from RPL40_individual_fraction_methylation_assay_allfractions_2024-10-02_11-40-38.sky.zip
03 Oct 2024 10:43:46,562 INFO : Expanding RPL40_individual_fraction_methylation_assay_allfractions.skyd
03 Oct 2024 10:43:46,589 INFO : Expanding RPL40_individual_fraction_methylation_assay_allfractions.sky.view
03 Oct 2024 10:43:46,590 INFO : Expanding RPL40_individual_fraction_methylation_assay_allfractions.sky
03 Oct 2024 10:43:46,591 INFO : Expanding RPL40_individual_fraction_methylation_assay_allfractions.skyl
03 Oct 2024 10:43:46,592 INFO : Reading Skyline file, RPL40_individual_fraction_methylation_assay_allfractions.sky, to determine if the TransitionChromInfos in the document should be stored...
03 Oct 2024 10:43:46,593 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
03 Oct 2024 10:43:46,595 INFO : 22% Done
03 Oct 2024 10:43:46,757 INFO : Inserting peptides1
03 Oct 2024 10:43:46,761 INFO : 43% Done
03 Oct 2024 10:43:46,778 INFO : 59% Done
03 Oct 2024 10:43:46,794 INFO : 71% Done
03 Oct 2024 10:43:46,811 INFO : 98% Done
03 Oct 2024 10:43:46,822 INFO : Done parsing Skyline document.
03 Oct 2024 10:43:46,848 INFO : Creating and populating temp tables for Proportion values
03 Oct 2024 10:43:46,852 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
03 Oct 2024 10:43:46,856 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
03 Oct 2024 10:43:46,858 INFO : Cleaning up temp tables
03 Oct 2024 10:43:47,151 INFO : Completed import of Skyline document from RPL40_individual_fraction_methylation_assay_allfractions_2024-10-02_11-40-38.sky.zip
03 Oct 2024 10:43:47,153 INFO : 100% Done
03 Oct 2024 10:43:47,158 INFO : Starting import from H4_SMYD5_assay_with_propionylation_2024-10-02_11-45-55.sky.zip
03 Oct 2024 10:43:47,160 INFO : Starting to import Skyline document from H4_SMYD5_assay_with_propionylation_2024-10-02_11-45-55.sky.zip
03 Oct 2024 10:43:47,160 INFO : Expanding H4_SMYD5_assay_with_propionylation.skyd
03 Oct 2024 10:43:47,168 INFO : Expanding H4_SMYD5_assay_with_propionylation.sky.view
03 Oct 2024 10:43:47,169 INFO : Expanding H4_SMYD5_assay_with_propionylation.sky
03 Oct 2024 10:43:47,170 INFO : Expanding H4_SMYD5_assay_with_propionylation.skyl
03 Oct 2024 10:43:47,171 INFO : Reading Skyline file, H4_SMYD5_assay_with_propionylation.sky, to determine if the TransitionChromInfos in the document should be stored...
03 Oct 2024 10:43:47,172 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
03 Oct 2024 10:43:47,174 INFO : 4% Done
03 Oct 2024 10:43:47,323 INFO : Inserting peptides1
03 Oct 2024 10:43:47,341 INFO : 41% Done
03 Oct 2024 10:43:47,391 INFO : 60% Done
03 Oct 2024 10:43:47,440 INFO : 78% Done
03 Oct 2024 10:43:47,488 INFO : 98% Done
03 Oct 2024 10:43:47,521 INFO : Done parsing Skyline document.
03 Oct 2024 10:43:47,544 INFO : Creating and populating temp tables for Proportion values
03 Oct 2024 10:43:47,549 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
03 Oct 2024 10:43:47,550 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
03 Oct 2024 10:43:47,551 INFO : Cleaning up temp tables
03 Oct 2024 10:43:47,834 INFO : Completed import of Skyline document from H4_SMYD5_assay_with_propionylation_2024-10-02_11-45-55.sky.zip
03 Oct 2024 10:43:47,837 INFO : 100% Done
03 Oct 2024 10:43:47,841 INFO : Starting import from RPL40_SMYD5_assay_with_propionylation_2024-10-02_11-46-31.sky.zip
03 Oct 2024 10:43:47,842 INFO : Starting to import Skyline document from RPL40_SMYD5_assay_with_propionylation_2024-10-02_11-46-31.sky.zip
03 Oct 2024 10:43:47,843 INFO : Expanding RPL40_SMYD5_assay_with_propionylation.skyd
03 Oct 2024 10:43:47,854 INFO : Expanding RPL40_SMYD5_assay_with_propionylation.sky.view
03 Oct 2024 10:43:47,854 INFO : Expanding RPL40_SMYD5_assay_with_propionylation.sky
03 Oct 2024 10:43:47,855 INFO : Expanding RPL40_SMYD5_assay_with_propionylation.skyl
03 Oct 2024 10:43:47,856 INFO : Reading Skyline file, RPL40_SMYD5_assay_with_propionylation.sky, to determine if the TransitionChromInfos in the document should be stored...
03 Oct 2024 10:43:47,857 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
03 Oct 2024 10:43:47,859 INFO : 10% Done
03 Oct 2024 10:43:48,000 INFO : Inserting peptides1
03 Oct 2024 10:43:48,003 INFO : 32% Done
03 Oct 2024 10:43:48,014 INFO : 59% Done
03 Oct 2024 10:43:48,023 INFO : 77% Done
03 Oct 2024 10:43:48,034 INFO : 98% Done
03 Oct 2024 10:43:48,042 INFO : Done parsing Skyline document.
03 Oct 2024 10:43:48,061 INFO : Creating and populating temp tables for Proportion values
03 Oct 2024 10:43:48,066 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
03 Oct 2024 10:43:48,067 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
03 Oct 2024 10:43:48,067 INFO : Cleaning up temp tables
03 Oct 2024 10:43:48,406 INFO : Completed import of Skyline document from RPL40_SMYD5_assay_with_propionylation_2024-10-02_11-46-31.sky.zip
03 Oct 2024 10:43:48,408 INFO : 100% Done
03 Oct 2024 10:43:48,412 INFO : Starting import from H3_SMYD5_assay_with_propionylation_2024-10-02_11-48-27.sky.zip
03 Oct 2024 10:43:48,414 INFO : Starting to import Skyline document from H3_SMYD5_assay_with_propionylation_2024-10-02_11-48-27.sky.zip
03 Oct 2024 10:43:48,415 INFO : Expanding H3_SMYD5_assay_with_propionylation.skyd
03 Oct 2024 10:43:48,422 INFO : Expanding H3_SMYD5_assay_with_propionylation.sky.view
03 Oct 2024 10:43:48,423 INFO : Expanding H3_SMYD5_assay_with_propionylation.sky
03 Oct 2024 10:43:48,424 INFO : Expanding H3_SMYD5_assay_with_propionylation.skyl
03 Oct 2024 10:43:48,425 INFO : Reading Skyline file, H3_SMYD5_assay_with_propionylation.sky, to determine if the TransitionChromInfos in the document should be stored...
03 Oct 2024 10:43:48,426 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
03 Oct 2024 10:43:48,428 INFO : 5% Done
03 Oct 2024 10:43:48,569 INFO : Inserting peptides1
03 Oct 2024 10:43:48,577 INFO : 28% Done
03 Oct 2024 10:43:48,605 INFO : 52% Done
03 Oct 2024 10:43:48,630 INFO : 75% Done
03 Oct 2024 10:43:48,657 INFO : 98% Done
03 Oct 2024 10:43:48,675 INFO : Done parsing Skyline document.
03 Oct 2024 10:43:48,700 INFO : Creating and populating temp tables for Proportion values
03 Oct 2024 10:43:48,705 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
03 Oct 2024 10:43:48,705 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
03 Oct 2024 10:43:48,706 INFO : Cleaning up temp tables
03 Oct 2024 10:43:49,022 INFO : Completed import of Skyline document from H3_SMYD5_assay_with_propionylation_2024-10-02_11-48-27.sky.zip
03 Oct 2024 10:43:49,024 INFO : 100% Done
03 Oct 2024 10:43:49,028 INFO : Starting import from RPL40K22_SMYD5_assay_2024-10-02_13-08-16.sky.zip
03 Oct 2024 10:43:49,030 INFO : Starting to import Skyline document from RPL40K22_SMYD5_assay_2024-10-02_13-08-16.sky.zip
03 Oct 2024 10:43:49,031 INFO : Expanding RPL40K22_SMYD5_assay.skyd
03 Oct 2024 10:43:49,083 INFO : Expanding RPL40K22_SMYD5_assay.sky.view
03 Oct 2024 10:43:49,084 INFO : Expanding RPL40K22_SMYD5_assay.sky
03 Oct 2024 10:43:49,084 INFO : Expanding RPL40K22_SMYD5_assay.skyl
03 Oct 2024 10:43:49,085 INFO : Reading Skyline file, RPL40K22_SMYD5_assay.sky, to determine if the TransitionChromInfos in the document should be stored...
03 Oct 2024 10:43:49,086 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
03 Oct 2024 10:43:49,089 INFO : 28% Done
03 Oct 2024 10:43:49,241 INFO : Inserting peptides1
03 Oct 2024 10:43:49,244 INFO : 51% Done
03 Oct 2024 10:43:49,249 INFO : 69% Done
03 Oct 2024 10:43:49,254 INFO : 85% Done
03 Oct 2024 10:43:49,260 INFO : 98% Done
03 Oct 2024 10:43:49,264 INFO : Done parsing Skyline document.
03 Oct 2024 10:43:49,282 INFO : Creating and populating temp tables for Proportion values
03 Oct 2024 10:43:49,287 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
03 Oct 2024 10:43:49,288 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
03 Oct 2024 10:43:49,289 INFO : Cleaning up temp tables
03 Oct 2024 10:43:49,588 INFO : Completed import of Skyline document from RPL40K22_SMYD5_assay_2024-10-02_13-08-16.sky.zip
03 Oct 2024 10:43:49,590 INFO : 100% Done
03 Oct 2024 10:43:49,595 INFO : Starting import from RPL40K22_SMYD5_assay_triplicate_2024-10-02_13-09-21.sky.zip
03 Oct 2024 10:43:49,596 INFO : Starting to import Skyline document from RPL40K22_SMYD5_assay_triplicate_2024-10-02_13-09-21.sky.zip
03 Oct 2024 10:43:49,597 INFO : Expanding RPL40K22_SMYD5_assay_triplicate.skyd
03 Oct 2024 10:43:49,605 INFO : Expanding RPL40K22_SMYD5_assay_triplicate.sky.view
03 Oct 2024 10:43:49,605 INFO : Expanding RPL40K22_SMYD5_assay_triplicate.sky
03 Oct 2024 10:43:49,606 INFO : Expanding RPL40K22_SMYD5_assay_triplicate.skyl
03 Oct 2024 10:43:49,606 INFO : Reading Skyline file, RPL40K22_SMYD5_assay_triplicate.sky, to determine if the TransitionChromInfos in the document should be stored...
03 Oct 2024 10:43:49,607 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
03 Oct 2024 10:43:49,609 INFO : 19% Done
03 Oct 2024 10:43:49,747 INFO : Inserting peptides1
03 Oct 2024 10:43:49,749 INFO : 48% Done
03 Oct 2024 10:43:49,757 INFO : 60% Done
03 Oct 2024 10:43:49,763 INFO : 84% Done
03 Oct 2024 10:43:49,768 INFO : 98% Done
03 Oct 2024 10:43:49,772 INFO : Done parsing Skyline document.
03 Oct 2024 10:43:49,790 INFO : Creating and populating temp tables for Proportion values
03 Oct 2024 10:43:49,794 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
03 Oct 2024 10:43:49,795 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
03 Oct 2024 10:43:49,796 INFO : Cleaning up temp tables
03 Oct 2024 10:43:50,123 INFO : Completed import of Skyline document from RPL40K22_SMYD5_assay_triplicate_2024-10-02_13-09-21.sky.zip
03 Oct 2024 10:43:50,126 INFO : 100% Done
03 Oct 2024 10:43:50,130 INFO : Starting import from H3K36_SMYD5_assay_2024-10-02_13-11-00.sky.zip
03 Oct 2024 10:43:50,132 INFO : Starting to import Skyline document from H3K36_SMYD5_assay_2024-10-02_13-11-00.sky.zip
03 Oct 2024 10:43:50,133 INFO : Expanding H3K36_SMYD5_assay.skyd
03 Oct 2024 10:43:50,141 INFO : Expanding H3K36_SMYD5_assay.sky.view
03 Oct 2024 10:43:50,142 INFO : Expanding H3K36_SMYD5_assay.sky
03 Oct 2024 10:43:50,142 INFO : Expanding H3K36_SMYD5_assay.skyl
03 Oct 2024 10:43:50,143 INFO : Reading Skyline file, H3K36_SMYD5_assay.sky, to determine if the TransitionChromInfos in the document should be stored...
03 Oct 2024 10:43:50,144 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
03 Oct 2024 10:43:50,146 INFO : 24% Done
03 Oct 2024 10:43:50,288 INFO : 45% Done
03 Oct 2024 10:43:50,288 INFO : Inserting peptides1
03 Oct 2024 10:43:50,290 INFO : 60% Done
03 Oct 2024 10:43:50,296 INFO : 74% Done
03 Oct 2024 10:43:50,302 INFO : 89% Done
03 Oct 2024 10:43:50,307 INFO : 98% Done
03 Oct 2024 10:43:50,311 INFO : Done parsing Skyline document.
03 Oct 2024 10:43:50,330 INFO : Creating and populating temp tables for Proportion values
03 Oct 2024 10:43:50,334 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
03 Oct 2024 10:43:50,335 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
03 Oct 2024 10:43:50,336 INFO : Cleaning up temp tables
03 Oct 2024 10:43:50,605 INFO : Completed import of Skyline document from H3K36_SMYD5_assay_2024-10-02_13-11-00.sky.zip
03 Oct 2024 10:43:50,607 INFO : 100% Done
03 Oct 2024 10:43:50,612 INFO : Starting import from H4K20_SMYD5_assay_2024-10-02_13-11-27.sky.zip
03 Oct 2024 10:43:50,613 INFO : Starting to import Skyline document from H4K20_SMYD5_assay_2024-10-02_13-11-27.sky.zip
03 Oct 2024 10:43:50,614 INFO : Expanding H4K20_SMYD5_assay.skyd
03 Oct 2024 10:43:50,622 INFO : Expanding H4K20_SMYD5_assay.sky.view
03 Oct 2024 10:43:50,622 INFO : Expanding H4K20_SMYD5_assay.sky
03 Oct 2024 10:43:50,623 INFO : Expanding H4K20_SMYD5_assay.skyl
03 Oct 2024 10:43:50,624 INFO : Reading Skyline file, H4K20_SMYD5_assay.sky, to determine if the TransitionChromInfos in the document should be stored...
03 Oct 2024 10:43:50,625 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
03 Oct 2024 10:43:50,627 INFO : 25% Done
03 Oct 2024 10:43:50,769 INFO : 45% Done
03 Oct 2024 10:43:50,769 INFO : Inserting peptides1
03 Oct 2024 10:43:50,771 INFO : 60% Done
03 Oct 2024 10:43:50,777 INFO : 74% Done
03 Oct 2024 10:43:50,783 INFO : 90% Done
03 Oct 2024 10:43:50,788 INFO : 98% Done
03 Oct 2024 10:43:50,792 INFO : Done parsing Skyline document.
03 Oct 2024 10:43:50,811 INFO : Creating and populating temp tables for Proportion values
03 Oct 2024 10:43:50,816 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
03 Oct 2024 10:43:50,817 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
03 Oct 2024 10:43:50,818 INFO : Cleaning up temp tables
03 Oct 2024 10:43:51,094 INFO : Completed import of Skyline document from H4K20_SMYD5_assay_2024-10-02_13-11-27.sky.zip
03 Oct 2024 10:43:51,097 INFO : 100% Done
03 Oct 2024 10:43:51,129 INFO : Done importing xar
03 Oct 2024 10:43:51,130 INFO : Loading pages and webpart properties
03 Oct 2024 10:43:51,195 INFO : Done importing 3 page(s) with 5 webpart(s)
03 Oct 2024 10:43:51,196 INFO : Loading File Browser config
03 Oct 2024 10:43:51,196 INFO : Done importing File Browser config
03 Oct 2024 10:43:51,197 INFO : Starting Sample Status Data import
03 Oct 2024 10:43:51,197 INFO : No sample types XAR file to process.
03 Oct 2024 10:43:51,197 INFO : Finished importing Sample Status Data
03 Oct 2024 10:43:51,201 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
03 Oct 2024 10:43:51,203 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
03 Oct 2024 10:43:51,204 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
03 Oct 2024 10:43:51,204 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
03 Oct 2024 10:43:51,205 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
03 Oct 2024 10:43:51,205 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
03 Oct 2024 10:43:51,206 INFO : Loading subfolders and container tabs
03 Oct 2024 10:43:51,277 INFO : New folder created with inherited permissions: /Panorama Public/2024/U of New South Wales Wilkins Lab - RPL40 methyltransferase discovery and characterisation/SMYD5_MT-MAMS
03 Oct 2024 10:43:51,277 INFO : Loading folder archive for SMYD5_MT-MAMS
03 Oct 2024 10:43:51,278 INFO : Loading folder properties (folder type, settings and active modules)
03 Oct 2024 10:43:51,353 INFO : Done importing folder properties (folder type, settings and active modules)
03 Oct 2024 10:43:51,354 INFO : Loading container specific module properties
03 Oct 2024 10:43:51,358 INFO : Done importing container specific module properties
03 Oct 2024 10:43:51,360 INFO : Loading queries
03 Oct 2024 10:43:51,363 INFO : 1 query imported
03 Oct 2024 10:43:51,363 INFO : Done importing queries
03 Oct 2024 10:43:51,364 INFO : Loading etl definitions
03 Oct 2024 10:43:51,365 INFO : Loading wikis
03 Oct 2024 10:43:51,366 INFO : 0 wikis imported
03 Oct 2024 10:43:51,367 INFO : Done importing wikis
03 Oct 2024 10:43:51,368 INFO : Starting Data Class Importer
03 Oct 2024 10:43:51,368 INFO : No types XAR file to process.
03 Oct 2024 10:43:51,368 INFO : Finished Data Class Importer
03 Oct 2024 10:43:51,369 INFO : Starting to copy files
03 Oct 2024 10:43:51,369 INFO : Copied 0 files
03 Oct 2024 10:43:51,369 INFO : Ensuring exp.data rows exist for imported files
03 Oct 2024 10:43:51,374 INFO : Starting Sample Type Importer
03 Oct 2024 10:43:51,374 INFO : No types XAR file to process.
03 Oct 2024 10:43:51,374 INFO : Finished Sample Type Importer
03 Oct 2024 10:43:51,376 INFO : Loading xar
03 Oct 2024 10:43:53,231 INFO : Starting import from I19X_2024-10-01_17-12-46.sky.zip
03 Oct 2024 10:43:53,236 INFO : Starting to import Skyline document from I19X_2024-10-01_17-12-46.sky.zip
03 Oct 2024 10:43:53,237 INFO : Expanding I19X.skyd
03 Oct 2024 10:43:53,386 INFO : Expanding I19X.sky.view
03 Oct 2024 10:43:53,386 INFO : Expanding I19X.sky
03 Oct 2024 10:43:53,388 INFO : Expanding I19X.skyl
03 Oct 2024 10:43:53,390 INFO : Reading Skyline file, I19X.sky, to determine if the TransitionChromInfos in the document should be stored...
03 Oct 2024 10:43:53,393 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
03 Oct 2024 10:43:53,395 INFO : 2% Done
03 Oct 2024 10:43:53,613 INFO : 3% Done
03 Oct 2024 10:43:53,613 INFO : Inserting peptides1
03 Oct 2024 10:43:53,616 INFO : 4% Done
03 Oct 2024 10:43:53,626 INFO : 5% Done
03 Oct 2024 10:43:53,638 INFO : 7% Done
03 Oct 2024 10:43:53,644 INFO : 9% Done
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03 Oct 2024 10:43:53,749 INFO : 29% Done
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03 Oct 2024 10:43:54,045 INFO : 79% Done
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03 Oct 2024 10:43:54,119 INFO : 94% Done
03 Oct 2024 10:43:54,125 INFO : 96% Done
03 Oct 2024 10:43:54,131 INFO : 98% Done
03 Oct 2024 10:43:54,142 INFO : Done parsing Skyline document.
03 Oct 2024 10:43:54,200 INFO : Creating and populating temp tables for Proportion values
03 Oct 2024 10:43:54,206 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
03 Oct 2024 10:43:54,249 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
03 Oct 2024 10:43:54,287 INFO : Cleaning up temp tables
03 Oct 2024 10:43:54,662 INFO : Completed import of Skyline document from I19X_2024-10-01_17-12-46.sky.zip
03 Oct 2024 10:43:54,665 INFO : 100% Done
03 Oct 2024 10:43:54,671 INFO : Starting import from C20X_2024-10-01_17-14-25.sky.zip
03 Oct 2024 10:43:54,673 INFO : Starting to import Skyline document from C20X_2024-10-01_17-14-25.sky.zip
03 Oct 2024 10:43:54,674 INFO : Expanding C20X.skyd
03 Oct 2024 10:43:54,827 INFO : Expanding C20X.sky.view
03 Oct 2024 10:43:54,828 INFO : Expanding C20X.sky
03 Oct 2024 10:43:54,830 INFO : Expanding C20X.skyl
03 Oct 2024 10:43:54,831 INFO : Reading Skyline file, C20X.sky, to determine if the TransitionChromInfos in the document should be stored...
03 Oct 2024 10:43:54,835 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
03 Oct 2024 10:43:54,837 INFO : 1% Done
03 Oct 2024 10:43:55,055 INFO : 2% Done
03 Oct 2024 10:43:55,055 INFO : Inserting peptides1
03 Oct 2024 10:43:55,057 INFO : 3% Done
03 Oct 2024 10:43:55,065 INFO : 4% Done
03 Oct 2024 10:43:55,072 INFO : 6% Done
03 Oct 2024 10:43:55,079 INFO : 7% Done
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03 Oct 2024 10:43:55,569 INFO : 98% Done
03 Oct 2024 10:43:55,575 INFO : Done parsing Skyline document.
03 Oct 2024 10:43:55,617 INFO : Creating and populating temp tables for Proportion values
03 Oct 2024 10:43:55,623 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
03 Oct 2024 10:43:55,667 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
03 Oct 2024 10:43:55,705 INFO : Cleaning up temp tables
03 Oct 2024 10:43:55,976 INFO : Completed import of Skyline document from C20X_2024-10-01_17-14-25.sky.zip
03 Oct 2024 10:43:55,978 INFO : 100% Done
03 Oct 2024 10:43:55,982 INFO : Starting import from R21X_2024-10-01_17-15-05.sky.zip
03 Oct 2024 10:43:55,984 INFO : Starting to import Skyline document from R21X_2024-10-01_17-15-05.sky.zip
03 Oct 2024 10:43:55,985 INFO : Expanding R21X.skyd
03 Oct 2024 10:43:56,129 INFO : Expanding R21X.sky.view
03 Oct 2024 10:43:56,130 INFO : Expanding R21X.sky
03 Oct 2024 10:43:56,132 INFO : Expanding R21X.skyl
03 Oct 2024 10:43:56,133 INFO : Reading Skyline file, R21X.sky, to determine if the TransitionChromInfos in the document should be stored...
03 Oct 2024 10:43:56,136 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
03 Oct 2024 10:43:56,139 INFO : 2% Done
03 Oct 2024 10:43:56,338 INFO : Inserting peptides1
03 Oct 2024 10:43:56,341 INFO : 3% Done
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03 Oct 2024 10:43:56,710 INFO : 74% Done
03 Oct 2024 10:43:56,716 INFO : 75% Done
03 Oct 2024 10:43:56,722 INFO : 76% Done
03 Oct 2024 10:43:56,728 INFO : 77% Done
03 Oct 2024 10:43:56,735 INFO : 79% Done
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03 Oct 2024 10:43:56,800 INFO : 92% Done
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03 Oct 2024 10:43:56,833 INFO : 98% Done
03 Oct 2024 10:43:56,839 INFO : Done parsing Skyline document.
03 Oct 2024 10:43:56,889 INFO : Creating and populating temp tables for Proportion values
03 Oct 2024 10:43:56,895 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
03 Oct 2024 10:43:56,937 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
03 Oct 2024 10:43:56,975 INFO : Cleaning up temp tables
03 Oct 2024 10:43:57,248 INFO : Completed import of Skyline document from R21X_2024-10-01_17-15-05.sky.zip
03 Oct 2024 10:43:57,250 INFO : 100% Done
03 Oct 2024 10:43:57,255 INFO : Starting import from C23X_2024-10-01_17-15-44.sky.zip
03 Oct 2024 10:43:57,257 INFO : Starting to import Skyline document from C23X_2024-10-01_17-15-44.sky.zip
03 Oct 2024 10:43:57,258 INFO : Expanding C23X.skyd
03 Oct 2024 10:43:57,408 INFO : Expanding C23X.sky.view
03 Oct 2024 10:43:57,409 INFO : Expanding C23X.sky
03 Oct 2024 10:43:57,411 INFO : Expanding C23X.skyl
03 Oct 2024 10:43:57,412 INFO : Reading Skyline file, C23X.sky, to determine if the TransitionChromInfos in the document should be stored...
03 Oct 2024 10:43:57,415 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
03 Oct 2024 10:43:57,417 INFO : 2% Done
03 Oct 2024 10:43:57,633 INFO : Inserting peptides1
03 Oct 2024 10:43:57,636 INFO : 3% Done
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03 Oct 2024 10:43:58,105 INFO : 97% Done
03 Oct 2024 10:43:58,111 INFO : 98% Done
03 Oct 2024 10:43:58,116 INFO : Done parsing Skyline document.
03 Oct 2024 10:43:58,162 INFO : Creating and populating temp tables for Proportion values
03 Oct 2024 10:43:58,169 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
03 Oct 2024 10:43:58,211 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
03 Oct 2024 10:43:58,249 INFO : Cleaning up temp tables
03 Oct 2024 10:43:58,528 INFO : Completed import of Skyline document from C23X_2024-10-01_17-15-44.sky.zip
03 Oct 2024 10:43:58,530 INFO : 100% Done
03 Oct 2024 10:43:58,534 INFO : Starting import from Y24X_2024-10-01_17-16-10.sky.zip
03 Oct 2024 10:43:58,536 INFO : Starting to import Skyline document from Y24X_2024-10-01_17-16-10.sky.zip
03 Oct 2024 10:43:58,537 INFO : Expanding Y24X.skyd
03 Oct 2024 10:43:58,720 INFO : Expanding Y24X.sky.view
03 Oct 2024 10:43:58,720 INFO : Expanding Y24X.sky
03 Oct 2024 10:43:58,722 INFO : Expanding Y24X.skyl
03 Oct 2024 10:43:58,724 INFO : Reading Skyline file, Y24X.sky, to determine if the TransitionChromInfos in the document should be stored...
03 Oct 2024 10:43:58,726 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
03 Oct 2024 10:43:58,729 INFO : 2% Done
03 Oct 2024 10:43:58,940 INFO : 3% Done
03 Oct 2024 10:43:58,940 INFO : Inserting peptides1
03 Oct 2024 10:43:58,942 INFO : 4% Done
03 Oct 2024 10:43:58,950 INFO : 5% Done
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03 Oct 2024 10:43:59,409 INFO : 98% Done
03 Oct 2024 10:43:59,414 INFO : Done parsing Skyline document.
03 Oct 2024 10:43:59,465 INFO : Creating and populating temp tables for Proportion values
03 Oct 2024 10:43:59,472 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
03 Oct 2024 10:43:59,514 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
03 Oct 2024 10:43:59,552 INFO : Cleaning up temp tables
03 Oct 2024 10:43:59,860 INFO : Completed import of Skyline document from Y24X_2024-10-01_17-16-10.sky.zip
03 Oct 2024 10:43:59,862 INFO : 100% Done
03 Oct 2024 10:43:59,867 INFO : Starting import from A25X_2024-10-01_17-16-38.sky.zip
03 Oct 2024 10:43:59,869 INFO : Starting to import Skyline document from A25X_2024-10-01_17-16-38.sky.zip
03 Oct 2024 10:43:59,870 INFO : Expanding A25X.skyd
03 Oct 2024 10:44:00,019 INFO : Expanding A25X.sky.view
03 Oct 2024 10:44:00,020 INFO : Expanding A25X.sky
03 Oct 2024 10:44:00,022 INFO : Expanding A25X.skyl
03 Oct 2024 10:44:00,024 INFO : Reading Skyline file, A25X.sky, to determine if the TransitionChromInfos in the document should be stored...
03 Oct 2024 10:44:00,027 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
03 Oct 2024 10:44:00,029 INFO : 1% Done
03 Oct 2024 10:44:00,261 INFO : 2% Done
03 Oct 2024 10:44:00,261 INFO : Inserting peptides1
03 Oct 2024 10:44:00,264 INFO : 3% Done
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03 Oct 2024 10:44:00,790 INFO : 98% Done
03 Oct 2024 10:44:00,797 INFO : Done parsing Skyline document.
03 Oct 2024 10:44:00,852 INFO : Creating and populating temp tables for Proportion values
03 Oct 2024 10:44:00,859 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
03 Oct 2024 10:44:00,902 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
03 Oct 2024 10:44:00,941 INFO : Cleaning up temp tables
03 Oct 2024 10:44:01,236 INFO : Completed import of Skyline document from A25X_2024-10-01_17-16-38.sky.zip
03 Oct 2024 10:44:01,239 INFO : 100% Done
03 Oct 2024 10:44:01,256 INFO : Done importing xar
03 Oct 2024 10:44:01,257 INFO : Loading pages and webpart properties
03 Oct 2024 10:44:01,322 INFO : Done importing 3 page(s) with 4 webpart(s)
03 Oct 2024 10:44:01,323 INFO : Loading File Browser config
03 Oct 2024 10:44:01,323 INFO : Done importing File Browser config
03 Oct 2024 10:44:01,324 INFO : Starting Sample Status Data import
03 Oct 2024 10:44:01,324 INFO : No sample types XAR file to process.
03 Oct 2024 10:44:01,324 INFO : Finished importing Sample Status Data
03 Oct 2024 10:44:01,328 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
03 Oct 2024 10:44:01,330 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
03 Oct 2024 10:44:01,331 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
03 Oct 2024 10:44:01,331 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
03 Oct 2024 10:44:01,332 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
03 Oct 2024 10:44:01,332 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
03 Oct 2024 10:44:01,334 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
03 Oct 2024 10:44:01,337 INFO : Adding runs imported in subfolders.
03 Oct 2024 10:44:01,355 INFO : Moving files to folder /Panorama Public/2024/U of New South Wales Wilkins Lab - RPL40 methyltransferase discovery and characterisation/SMYD5_MT-MAMS and creating symlinks
03 Oct 2024 10:44:01,489 INFO : Aligning data files urls in folder: /Panorama Public/2024/U of New South Wales Wilkins Lab - RPL40 methyltransferase discovery and characterisation/SMYD5_MT-MAMS
03 Oct 2024 10:44:01,517 INFO : Done importing folder archive for SMYD5_MT-MAMS
03 Oct 2024 10:44:01,517 INFO : Done importing subfolders and container tabs
03 Oct 2024 10:44:01,517 INFO : Moving files to folder /Panorama Public/2024/U of New South Wales Wilkins Lab - RPL40 methyltransferase discovery and characterisation and creating symlinks
03 Oct 2024 10:44:01,927 INFO : Aligning data files urls in folder: /Panorama Public/2024/U of New South Wales Wilkins Lab - RPL40 methyltransferase discovery and characterisation
03 Oct 2024 10:44:02,021 INFO : Importing files metadata.
03 Oct 2024 10:44:02,024 INFO :
03 Oct 2024 10:44:02,024 INFO : Experiment import completed successfully.
03 Oct 2024 10:44:02,024 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
03 Oct 2024 10:44:02,048 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
03 Oct 2024 10:44:02,048 INFO :
03 Oct 2024 10:44:02,048 INFO : Checking for library folders.
03 Oct 2024 10:44:02,051 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
03 Oct 2024 10:44:02,070 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
03 Oct 2024 10:44:02,070 INFO :
03 Oct 2024 10:44:02,070 INFO : Finishing up experiment copy.
03 Oct 2024 10:44:02,072 INFO : Updating TargetedMS experiment entry in target folder /Panorama Public/2024/U of New South Wales Wilkins Lab - RPL40 methyltransferase discovery and characterisation
03 Oct 2024 10:44:02,073 INFO : Setting version on new experiment to 1
03 Oct 2024 10:44:02,075 INFO : Updating permanent link to point to the new copy of the data.
03 Oct 2024 10:44:02,107 INFO : Removing copy permissions given to Panorama Public
03 Oct 2024 10:44:02,111 INFO : Adding read permissions to all users that are folder admins in the source folder.
03 Oct 2024 10:44:02,111 INFO : Assigning ReaderRole to tara.bartolec@unsw.edu.au
03 Oct 2024 10:44:02,111 INFO : Assigning ReaderRole to j.hamey@unsw.edu.au
03 Oct 2024 10:44:02,111 INFO : Assigning PanoramaPublicSubmitterRole to j.hamey@unsw.edu.au
03 Oct 2024 10:44:02,117 INFO : User j.hamey@unsw.edu.au is already a member of group Panorama Public Submitters
03 Oct 2024 10:44:02,117 INFO : Updating the 'Raw Data' tab configuration
03 Oct 2024 10:44:02,119 INFO : Creating a reviewer account.
03 Oct 2024 10:44:02,204 INFO : Created reviewer with email: panorama+reviewer294@proteinms.net
03 Oct 2024 10:44:02,204 INFO : Generating password.
03 Oct 2024 10:44:02,343 INFO : Set reviewer password successfully.
03 Oct 2024 10:44:02,351 INFO : Adding user panorama+reviewer294@proteinms.net to group Reviewers
03 Oct 2024 10:44:02,353 INFO : Hiding the Data Pipeline tab.
03 Oct 2024 10:44:02,363 INFO : Updating Submission. Setting copiedExperimentId to 1919
03 Oct 2024 10:44:05,294 INFO : Assigning a ProteomeXchange ID.
03 Oct 2024 10:44:05,426 INFO : Assigned ProteomeXchange ID: PXD056489
03 Oct 2024 10:44:05,426 INFO : Assigning a DOI.
03 Oct 2024 10:44:06,904 INFO : Assigned DOI: 10.6069/hccp-3d39
03 Oct 2024 10:44:07,048 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'