20 Jan 2025 16:47:10,995 INFO : Validating data for a ProteomeXchange submission.

20 Jan 2025 16:47:10,996 INFO : =======================================

20 Jan 2025 16:47:11,006 DEBUG: Resetting Job ID: 21193114-b9bf-103d-b1ba-8d1d6db2ce32

20 Jan 2025 16:47:11,023 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.PxDataValidationTask' at location 'webserver'

20 Jan 2025 16:47:11,024 INFO : Validating data for experiment Id: 1954, validation Id: 1400

20 Jan 2025 16:47:11,092 INFO : Validating data for 4 Skyline documents in 1 folders

20 Jan 2025 16:47:15,510 INFO : Sample file validation for Skyline document: PXD002966_lc-BHZ_Plasma_2024-03-24_14-42-16.sky.zip

20 Jan 2025 16:47:15,511 INFO :   Found all sample files.

20 Jan 2025 16:49:03,689 INFO : Sample file validation for Skyline document: ARP-Serum_RA_enriched_filtered_2024-11-30_20-01-07.sky.zip

20 Jan 2025 16:49:03,690 INFO :   Found all sample files.

20 Jan 2025 16:49:07,211 INFO : Sample file validation for Skyline document: ARP-Serum_RA_NonEnriched_clinical_filtered_2024-11-30_20-30-58.sky.zip

20 Jan 2025 16:49:07,211 INFO :   Found all sample files.

20 Jan 2025 16:49:43,647 INFO : Sample file validation for Skyline document: ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,648 INFO :   Found all sample files.

20 Jan 2025 16:49:43,732 INFO : Modifications validation:

20 Jan 2025 16:49:43,732 INFO : VALID MODIFICATIONS:

20 Jan 2025 16:49:43,732 INFO : 10380: 3-deoxyglucosone (R): UNIMOD:949 - 3-deoxyglucosone

20 Jan 2025 16:49:43,732 INFO :     ARP-Serum_RA_NonEnriched_clinical_filtered_2024-11-30_20-30-58.sky.zip

20 Jan 2025 16:49:43,732 INFO : 10384: Didehydro (S): UNIMOD:401 - Didehydro

20 Jan 2025 16:49:43,732 INFO :     ARP-Serum_RA_NonEnriched_clinical_filtered_2024-11-30_20-30-58.sky.zip

20 Jan 2025 16:49:43,732 INFO : 10385: Dehydrated (T): UNIMOD:23 - Dehydrated

20 Jan 2025 16:49:43,732 INFO :     ARP-Serum_RA_NonEnriched_clinical_filtered_2024-11-30_20-30-58.sky.zip

20 Jan 2025 16:49:43,732 INFO :     ARP-Serum_RA_enriched_filtered_2024-11-30_20-01-07.sky.zip

20 Jan 2025 16:49:43,732 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,732 INFO : 10389: Carbamidomethyl (E): UNIMOD:4 - Carbamidomethyl

20 Jan 2025 16:49:43,732 INFO :     ARP-Serum_RA_NonEnriched_clinical_filtered_2024-11-30_20-30-58.sky.zip

20 Jan 2025 16:49:43,732 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,732 INFO : 10391: Oxidation (N): UNIMOD:35 - Oxidation

20 Jan 2025 16:49:43,732 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,732 INFO : 10404: Carbamidomethyl (C): UNIMOD:4 - Carbamidomethyl

20 Jan 2025 16:49:43,732 INFO :     ARP-Serum_RA_NonEnriched_clinical_filtered_2024-11-30_20-30-58.sky.zip

20 Jan 2025 16:49:43,732 INFO :     ARP-Serum_RA_enriched_filtered_2024-11-30_20-01-07.sky.zip

20 Jan 2025 16:49:43,732 INFO :     PXD002966_lc-BHZ_Plasma_2024-03-24_14-42-16.sky.zip

20 Jan 2025 16:49:43,732 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,732 INFO : 10411: Gln->pyro-Glu (N-term Q): UNIMOD:28 - Gln->pyro-Glu

20 Jan 2025 16:49:43,732 INFO :     ARP-Serum_RA_NonEnriched_clinical_filtered_2024-11-30_20-30-58.sky.zip

20 Jan 2025 16:49:43,732 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,732 INFO : 10412: Oxidation (P): UNIMOD:35 - Oxidation

20 Jan 2025 16:49:43,732 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,732 INFO : 10413: Ammonia-loss (N): UNIMOD:385 - Ammonia-loss

20 Jan 2025 16:49:43,732 INFO :     ARP-Serum_RA_NonEnriched_clinical_filtered_2024-11-30_20-30-58.sky.zip

20 Jan 2025 16:49:43,732 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,732 INFO : 10414: Oxidation (D): UNIMOD:35 - Oxidation

20 Jan 2025 16:49:43,733 INFO :     ARP-Serum_RA_enriched_filtered_2024-11-30_20-01-07.sky.zip

20 Jan 2025 16:49:43,733 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,733 INFO : 10415: GlyGly (C): UNIMOD:121 - GG

20 Jan 2025 16:49:43,733 INFO :     ARP-Serum_RA_NonEnriched_clinical_filtered_2024-11-30_20-30-58.sky.zip

20 Jan 2025 16:49:43,733 INFO : 10416: Formyl (K): UNIMOD:122 - Formyl

20 Jan 2025 16:49:43,733 INFO :     ARP-Serum_RA_NonEnriched_clinical_filtered_2024-11-30_20-30-58.sky.zip

20 Jan 2025 16:49:43,733 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,733 INFO : 10417: Oxidation (HW): UNIMOD:35 - Oxidation

20 Jan 2025 16:49:43,733 INFO :     ARP-Serum_RA_enriched_filtered_2024-11-30_20-01-07.sky.zip

20 Jan 2025 16:49:43,733 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,733 INFO : 10419: Deamidated (NQ): UNIMOD:7 - Deamidated

20 Jan 2025 16:49:43,733 INFO :     ARP-Serum_RA_NonEnriched_clinical_filtered_2024-11-30_20-30-58.sky.zip

20 Jan 2025 16:49:43,733 INFO :     ARP-Serum_RA_enriched_filtered_2024-11-30_20-01-07.sky.zip

20 Jan 2025 16:49:43,733 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,733 INFO : 10420: Cation:Na (DE): UNIMOD:30 - Cation:Na

20 Jan 2025 16:49:43,733 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,733 INFO : 10422: Oxidation (M): UNIMOD:35 - Oxidation

20 Jan 2025 16:49:43,733 INFO :     ARP-Serum_RA_NonEnriched_clinical_filtered_2024-11-30_20-30-58.sky.zip

20 Jan 2025 16:49:43,733 INFO :     ARP-Serum_RA_enriched_filtered_2024-11-30_20-01-07.sky.zip

20 Jan 2025 16:49:43,733 INFO :     PXD002966_lc-BHZ_Plasma_2024-03-24_14-42-16.sky.zip

20 Jan 2025 16:49:43,733 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,733 INFO : 10423: Dehydrated (Y): UNIMOD:23 - Dehydrated

20 Jan 2025 16:49:43,734 INFO :     ARP-Serum_RA_enriched_filtered_2024-11-30_20-01-07.sky.zip

20 Jan 2025 16:49:43,734 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,734 INFO : 10424: Carbamidomethyl (N-term): UNIMOD:4 - Carbamidomethyl

20 Jan 2025 16:49:43,734 INFO :     ARP-Serum_RA_NonEnriched_clinical_filtered_2024-11-30_20-30-58.sky.zip

20 Jan 2025 16:49:43,734 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,734 INFO : 10425: Dioxidation (P): UNIMOD:425 - Dioxidation

20 Jan 2025 16:49:43,734 INFO :     ARP-Serum_RA_NonEnriched_clinical_filtered_2024-11-30_20-30-58.sky.zip

20 Jan 2025 16:49:43,734 INFO :     ARP-Serum_RA_enriched_filtered_2024-11-30_20-01-07.sky.zip

20 Jan 2025 16:49:43,734 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,734 INFO : 10426: Carbamidomethyl (K): UNIMOD:4 - Carbamidomethyl

20 Jan 2025 16:49:43,734 INFO :     ARP-Serum_RA_NonEnriched_clinical_filtered_2024-11-30_20-30-58.sky.zip

20 Jan 2025 16:49:43,734 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,734 INFO : 10427: Carbamidomethyl (H): UNIMOD:4 - Carbamidomethyl

20 Jan 2025 16:49:43,734 INFO :     ARP-Serum_RA_NonEnriched_clinical_filtered_2024-11-30_20-30-58.sky.zip

20 Jan 2025 16:49:43,734 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,734 INFO : 10428: Carbamyl (K): UNIMOD:5 - Carbamyl

20 Jan 2025 16:49:43,734 INFO :     ARP-Serum_RA_NonEnriched_clinical_filtered_2024-11-30_20-30-58.sky.zip

20 Jan 2025 16:49:43,734 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,734 INFO : 10429: Dioxidation (F): UNIMOD:425 - Dioxidation

20 Jan 2025 16:49:43,734 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,734 INFO : 10430: Oxidation (Y): UNIMOD:35 - Oxidation

20 Jan 2025 16:49:43,734 INFO :     ARP-Serum_RA_enriched_filtered_2024-11-30_20-01-07.sky.zip

20 Jan 2025 16:49:43,734 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,734 INFO : 10431: HNE (H): UNIMOD:53 - HNE

20 Jan 2025 16:49:43,734 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,734 INFO : 10432: Dethiomethyl (M): UNIMOD:526 - Dethiomethyl

20 Jan 2025 16:49:43,734 INFO :     ARP-Serum_RA_NonEnriched_clinical_filtered_2024-11-30_20-30-58.sky.zip

20 Jan 2025 16:49:43,734 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,734 INFO : 10433: Hex (K): UNIMOD:41 - Hex

20 Jan 2025 16:49:43,734 INFO :     ARP-Serum_RA_NonEnriched_clinical_filtered_2024-11-30_20-30-58.sky.zip

20 Jan 2025 16:49:43,734 INFO : 10434: HNE (K): UNIMOD:53 - HNE

20 Jan 2025 16:49:43,734 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,734 INFO : 10435: Dioxidation (K): UNIMOD:425 - Dioxidation

20 Jan 2025 16:49:43,734 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,734 INFO : 10436: Carbamidomethyl (D): UNIMOD:4 - Carbamidomethyl

20 Jan 2025 16:49:43,734 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,734 INFO : 10438: Dehydrated (D): UNIMOD:23 - Dehydrated

20 Jan 2025 16:49:43,734 INFO :     ARP-Serum_RA_NonEnriched_clinical_filtered_2024-11-30_20-30-58.sky.zip

20 Jan 2025 16:49:43,734 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,734 INFO : 10439: Carbamyl (N-term): UNIMOD:5 - Carbamyl

20 Jan 2025 16:49:43,734 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,734 INFO : 10440: Dehydrated (S): UNIMOD:23 - Dehydrated

20 Jan 2025 16:49:43,734 INFO :     ARP-Serum_RA_enriched_filtered_2024-11-30_20-01-07.sky.zip

20 Jan 2025 16:49:43,734 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,734 INFO : 10442: Methyl (DE): UNIMOD:34 - Methyl

20 Jan 2025 16:49:43,734 INFO :     ARP-Serum_RA_NonEnriched_clinical_filtered_2024-11-30_20-30-58.sky.zip

20 Jan 2025 16:49:43,734 INFO : 10443: Biotin (N-term): UNIMOD:3 - Biotin

20 Jan 2025 16:49:43,734 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,734 INFO : 10447: Glu->pyro-Glu (N-term E): UNIMOD:27 - Glu->pyro-Glu

20 Jan 2025 16:49:43,734 INFO :     ARP-Serum_RA_NonEnriched_clinical_filtered_2024-11-30_20-30-58.sky.zip

20 Jan 2025 16:49:43,734 INFO : 10455: Oxidation (K): UNIMOD:35 - Oxidation

20 Jan 2025 16:49:43,734 INFO :     ARP-Serum_RA_NonEnriched_clinical_filtered_2024-11-30_20-30-58.sky.zip

20 Jan 2025 16:49:43,734 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,734 INFO : 10456: Dioxidation (Y): UNIMOD:425 - Dioxidation

20 Jan 2025 16:49:43,734 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,734 INFO : 10457: Formyl (N-term): UNIMOD:122 - Formyl

20 Jan 2025 16:49:43,734 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,735 INFO : 10464: Dioxidation (W): UNIMOD:425 - Dioxidation

20 Jan 2025 16:49:43,735 INFO :     ARP-Serum_RA_NonEnriched_clinical_filtered_2024-11-30_20-30-58.sky.zip

20 Jan 2025 16:49:43,735 INFO : 10467: Cation:Na (C-term): UNIMOD:30 - Cation:Na

20 Jan 2025 16:49:43,735 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,735 INFO : 10473: Oxidation (R): UNIMOD:35 - Oxidation

20 Jan 2025 16:49:43,735 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,735 INFO : INVALID MODIFICATIONS (No Unimod ID):

20 Jan 2025 16:49:43,735 INFO : 10377: ARP_mda_ma: No UNIMOD Id

20 Jan 2025 16:49:43,735 INFO :     ARP-Serum_RA_enriched_filtered_2024-11-30_20-01-07.sky.zip

20 Jan 2025 16:49:43,735 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,735 INFO : 10378: ARP_sc_amid_plus14ox_glu: No UNIMOD Id

20 Jan 2025 16:49:43,735 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,735 INFO : 10379: ARP_sc_amid_plus14ox_asp: No UNIMOD Id

20 Jan 2025 16:49:43,735 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,735 INFO : 10381: ARP_C2H2N2O: No UNIMOD Id

20 Jan 2025 16:49:43,735 INFO :     ARP-Serum_RA_enriched_filtered_2024-11-30_20-01-07.sky.zip

20 Jan 2025 16:49:43,735 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,735 INFO : 10382: ARP_hexose: No UNIMOD Id

20 Jan 2025 16:49:43,735 INFO :     ARP-Serum_RA_enriched_filtered_2024-11-30_20-01-07.sky.zip

20 Jan 2025 16:49:43,735 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,735 INFO : 10383: ARP_aldomine: No UNIMOD Id

20 Jan 2025 16:49:43,735 INFO :     ARP-Serum_RA_enriched_filtered_2024-11-30_20-01-07.sky.zip

20 Jan 2025 16:49:43,735 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,735 INFO : 10386: ARP_diacetyl_sb: No UNIMOD Id

20 Jan 2025 16:49:43,735 INFO :     ARP-Serum_RA_enriched_filtered_2024-11-30_20-01-07.sky.zip

20 Jan 2025 16:49:43,735 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,735 INFO : 10387: ARP_diacetyl_ma: No UNIMOD Id

20 Jan 2025 16:49:43,735 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,735 INFO : 10388: ARP_lys_fdp: No UNIMOD Id

20 Jan 2025 16:49:43,735 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,735 INFO : 10390: ARP_one_ma: No UNIMOD Id

20 Jan 2025 16:49:43,735 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,735 INFO : 10392: ARP_one_sb: No UNIMOD Id

20 Jan 2025 16:49:43,735 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,735 INFO : 10393: ARP_acrolein_ma: No UNIMOD Id

20 Jan 2025 16:49:43,735 INFO :     ARP-Serum_RA_enriched_filtered_2024-11-30_20-01-07.sky.zip

20 Jan 2025 16:49:43,735 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,735 INFO : 10394: ARP_ohe_ma: No UNIMOD Id

20 Jan 2025 16:49:43,735 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,735 INFO : 10395: ARP_ohe_sb: No UNIMOD Id

20 Jan 2025 16:49:43,735 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,735 INFO : 10396: ARP_go: No UNIMOD Id

20 Jan 2025 16:49:43,735 INFO :     ARP-Serum_RA_enriched_filtered_2024-11-30_20-01-07.sky.zip

20 Jan 2025 16:49:43,735 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,735 INFO : 10397: ARP_go_minusH2O: No UNIMOD Id

20 Jan 2025 16:49:43,735 INFO :     ARP-Serum_RA_enriched_filtered_2024-11-30_20-01-07.sky.zip

20 Jan 2025 16:49:43,735 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,735 INFO : 10398: ARP_ser_ox: No UNIMOD Id

20 Jan 2025 16:49:43,735 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,735 INFO : 10399: ARP_lys_ox: No UNIMOD Id

20 Jan 2025 16:49:43,735 INFO :     ARP-Serum_RA_enriched_filtered_2024-11-30_20-01-07.sky.zip

20 Jan 2025 16:49:43,735 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,735 INFO : 10400: ARP_lys_ox_minCH2: No UNIMOD Id

20 Jan 2025 16:49:43,735 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,735 INFO : 10401: ARP_pro_ox: No UNIMOD Id

20 Jan 2025 16:49:43,735 INFO :     ARP-Serum_RA_enriched_filtered_2024-11-30_20-01-07.sky.zip

20 Jan 2025 16:49:43,735 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,735 INFO : 10402: ARP_thr_ox: No UNIMOD Id

20 Jan 2025 16:49:43,735 INFO :     ARP-Serum_RA_enriched_filtered_2024-11-30_20-01-07.sky.zip

20 Jan 2025 16:49:43,735 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,735 INFO : 10403: ARP_arg_ox: No UNIMOD Id

20 Jan 2025 16:49:43,736 INFO :     ARP-Serum_RA_enriched_filtered_2024-11-30_20-01-07.sky.zip

20 Jan 2025 16:49:43,736 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,736 INFO : 10405: ARP_glu_ox: No UNIMOD Id

20 Jan 2025 16:49:43,736 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,736 INFO : 10406: ARP_asp_ox: No UNIMOD Id

20 Jan 2025 16:49:43,736 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,736 INFO : 10407: ARP_met_ox: No UNIMOD Id

20 Jan 2025 16:49:43,736 INFO :     ARP-Serum_RA_enriched_filtered_2024-11-30_20-01-07.sky.zip

20 Jan 2025 16:49:43,736 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,736 INFO : 10408: ARP_leu-ile_ox_minCH2: No UNIMOD Id

20 Jan 2025 16:49:43,736 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,736 INFO : 10409: ARP_deoxyglucosone_sb: No UNIMOD Id

20 Jan 2025 16:49:43,736 INFO :     ARP-Serum_RA_enriched_filtered_2024-11-30_20-01-07.sky.zip

20 Jan 2025 16:49:43,736 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,736 INFO : 10410: ARP_bb_cleavage_N-term: No UNIMOD Id

20 Jan 2025 16:49:43,736 INFO :     ARP-Serum_RA_enriched_filtered_2024-11-30_20-01-07.sky.zip

20 Jan 2025 16:49:43,736 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,736 INFO : 10418: ARP_P2A_ma: No UNIMOD Id

20 Jan 2025 16:49:43,736 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,736 INFO : 10421: ARP_Cys_355: No UNIMOD Id

20 Jan 2025 16:49:43,736 INFO :     ARP-Serum_RA_enriched_filtered_2024-11-30_20-01-07.sky.zip

20 Jan 2025 16:49:43,736 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,736 INFO : 10437: ARP_C3H2N2O: No UNIMOD Id

20 Jan 2025 16:49:43,736 INFO :     ARP-Serum_RA_enriched_filtered_2024-11-30_20-01-07.sky.zip

20 Jan 2025 16:49:43,736 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,736 INFO : 10441: ARP_C5H4O2: No UNIMOD Id

20 Jan 2025 16:49:43,736 INFO :     ARP-Serum_RA_enriched_filtered_2024-11-30_20-01-07.sky.zip

20 Jan 2025 16:49:43,736 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,736 INFO : 10444: ARP_sc_plus14_asn: No UNIMOD Id

20 Jan 2025 16:49:43,736 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,736 INFO : 10445: ARP_trp_ox: No UNIMOD Id

20 Jan 2025 16:49:43,736 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,736 INFO : 10446: ARP_trp_formykynurenine: No UNIMOD Id

20 Jan 2025 16:49:43,736 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,736 INFO : 10448: ARP_glu_ox_bb_cleavage: No UNIMOD Id

20 Jan 2025 16:49:43,736 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,736 INFO : 10449: ARP_asn_ox_cleavage: No UNIMOD Id

20 Jan 2025 16:49:43,736 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,736 INFO : 10450: ARP_C2H2N2O2: No UNIMOD Id

20 Jan 2025 16:49:43,736 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,736 INFO : 10451: ARP_sc_plus14_asp: No UNIMOD Id

20 Jan 2025 16:49:43,736 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,736 INFO : 10452: ARP_his_ox: No UNIMOD Id

20 Jan 2025 16:49:43,736 INFO :     ARP-Serum_RA_enriched_filtered_2024-11-30_20-01-07.sky.zip

20 Jan 2025 16:49:43,736 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,736 INFO : 10453: ARP_mda_sb: No UNIMOD Id

20 Jan 2025 16:49:43,736 INFO :     ARP-Serum_RA_enriched_filtered_2024-11-30_20-01-07.sky.zip

20 Jan 2025 16:49:43,736 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,736 INFO : 10454: ARP_C3H2O3: No UNIMOD Id

20 Jan 2025 16:49:43,736 INFO :     ARP-Serum_RA_enriched_filtered_2024-11-30_20-01-07.sky.zip

20 Jan 2025 16:49:43,736 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,736 INFO : 10458: ARP_asp_glu_ox_2: No UNIMOD Id

20 Jan 2025 16:49:43,736 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,736 INFO : 10459: ARP_lys_ox_minCH4: No UNIMOD Id

20 Jan 2025 16:49:43,736 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,736 INFO : 10460: ARP_t1_pyrraline_minH2: No UNIMOD Id

20 Jan 2025 16:49:43,736 INFO :     ARP-Serum_RA_enriched_filtered_2024-11-30_20-01-07.sky.zip

20 Jan 2025 16:49:43,736 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,736 INFO : 10461: ARP_gln_asn_ox_2: No UNIMOD Id

20 Jan 2025 16:49:43,736 INFO :     ARP-Serum_RA_enriched_filtered_2024-11-30_20-01-07.sky.zip

20 Jan 2025 16:49:43,736 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,736 INFO : 10462: ARP_DHPK: No UNIMOD Id

20 Jan 2025 16:49:43,737 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,737 INFO : 10463: ARP_sulfenic: No UNIMOD Id

20 Jan 2025 16:49:43,737 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,737 INFO : 10465: ARP_asp_ox_cleavage: No UNIMOD Id

20 Jan 2025 16:49:43,737 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,737 INFO : 10466: ARP_DHPF: No UNIMOD Id

20 Jan 2025 16:49:43,737 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,737 INFO : 10468: lcBHZ_OxThrRed (T): No UNIMOD Id

20 Jan 2025 16:49:43,737 INFO :     PXD002966_lc-BHZ_Plasma_2024-03-24_14-42-16.sky.zip

20 Jan 2025 16:49:43,737 INFO : 10469: ARP_t2_bis_acrolein_ma: No UNIMOD Id

20 Jan 2025 16:49:43,737 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,737 INFO : 10470: lcBHZ_OxArgRed (R): No UNIMOD Id

20 Jan 2025 16:49:43,737 INFO :     PXD002966_lc-BHZ_Plasma_2024-03-24_14-42-16.sky.zip

20 Jan 2025 16:49:43,737 INFO : 10471: ARP_t1_pyrraline: No UNIMOD Id

20 Jan 2025 16:49:43,737 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,737 INFO : 10472: lcBHZ_OxLysRed (K): No UNIMOD Id

20 Jan 2025 16:49:43,737 INFO :     PXD002966_lc-BHZ_Plasma_2024-03-24_14-42-16.sky.zip

20 Jan 2025 16:49:43,737 INFO : 10474: ARP_isoimide: No UNIMOD Id

20 Jan 2025 16:49:43,737 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,737 INFO : 10475: lcBHZ_OxProRed (P): No UNIMOD Id

20 Jan 2025 16:49:43,737 INFO :     PXD002966_lc-BHZ_Plasma_2024-03-24_14-42-16.sky.zip

20 Jan 2025 16:49:43,737 INFO : 10476: ARP_imide: No UNIMOD Id

20 Jan 2025 16:49:43,737 INFO :     ARP-Serum_RA_enriched_filtered_2024-11-30_20-01-07.sky.zip

20 Jan 2025 16:49:43,737 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,737 INFO : 10477: lcBHZ_OxPlus14Red (LVKRIEAQ): No UNIMOD Id

20 Jan 2025 16:49:43,737 INFO :     PXD002966_lc-BHZ_Plasma_2024-03-24_14-42-16.sky.zip

20 Jan 2025 16:49:43,737 INFO : 10478: lcBHZ_DecarboxylationRed (DE): No UNIMOD Id

20 Jan 2025 16:49:43,737 INFO :     PXD002966_lc-BHZ_Plasma_2024-03-24_14-42-16.sky.zip

20 Jan 2025 16:49:43,737 INFO : 10479: lcBHZ_OxMetRed (M): No UNIMOD Id

20 Jan 2025 16:49:43,737 INFO :     PXD002966_lc-BHZ_Plasma_2024-03-24_14-42-16.sky.zip

20 Jan 2025 16:49:43,737 INFO : 10480: lcBHZ_ImideRed (NQ): No UNIMOD Id

20 Jan 2025 16:49:43,737 INFO :     PXD002966_lc-BHZ_Plasma_2024-03-24_14-42-16.sky.zip

20 Jan 2025 16:49:43,737 INFO : 10481: lcBHZ_IsoimideRed (DE): No UNIMOD Id

20 Jan 2025 16:49:43,737 INFO :     PXD002966_lc-BHZ_Plasma_2024-03-24_14-42-16.sky.zip

20 Jan 2025 16:49:43,737 INFO : 10482: ARP_sc_plus14_leu: No UNIMOD Id

20 Jan 2025 16:49:43,737 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,737 INFO : 10483: ARP_sc_plus14_lys: No UNIMOD Id

20 Jan 2025 16:49:43,737 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,737 INFO : 10484: ARP_sc_plus14_val: No UNIMOD Id

20 Jan 2025 16:49:43,737 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,737 INFO : 10485: ARP_sc_plus14_ala: No UNIMOD Id

20 Jan 2025 16:49:43,737 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,737 INFO : 10486: ARP_sc_plus14_gln: No UNIMOD Id

20 Jan 2025 16:49:43,737 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,737 INFO : 10487: ARP_sc_plus14_glu: No UNIMOD Id

20 Jan 2025 16:49:43,737 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,737 INFO : 10488: ARP_pentenal_ma: No UNIMOD Id

20 Jan 2025 16:49:43,737 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,737 INFO : 10489: ARP_crotonoaldehyde_ma: No UNIMOD Id

20 Jan 2025 16:49:43,737 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,737 INFO : 10490: ARP_hne_ma: No UNIMOD Id

20 Jan 2025 16:49:43,737 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,737 INFO : 10491: ARP_hhe_ma: No UNIMOD Id

20 Jan 2025 16:49:43,737 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,737 INFO : 10492: ARP_mgo_ma: No UNIMOD Id

20 Jan 2025 16:49:43,737 INFO :     ARP-Serum_RA_enriched_filtered_2024-11-30_20-01-07.sky.zip

20 Jan 2025 16:49:43,737 INFO :     ARP-Serum_RA_enriched_DDA_preFiltering_2024-11-30_21-00-26.sky.zip

20 Jan 2025 16:49:43,739 INFO : Validating spectral library: lcBHZ_Havelund_PEAKS.blib

20 Jan 2025 16:49:53,926 INFO : 'lcBHZ_Havelund_PEAKS' (lcBHZ_Havelund_PEAKS.blib) library in 1 Skyline documents was built with 5 raw files; 1 peptide Id files. Status: VALID

20 Jan 2025 16:49:53,928 INFO : Validating spectral library: ARP_Serum_RA_NonEnriched_Transfer_PEAKS_PTM_AGES_1perc.blib

20 Jan 2025 16:50:00,231 INFO : 'ARP-Serum_RA_NonEnriched_Transfer_PEAKS_PTM-AGES_1perc' (ARP_Serum_RA_NonEnriched_Transfer_PEAKS_PTM_AGES_1perc.blib) library in 1 Skyline documents was built with 6 raw files; 1 peptide Id files. Status: VALID

20 Jan 2025 16:50:00,233 INFO : Validating spectral library: PXD023738_PEAKS_5perc_PepLevel_reanalysis.blib

20 Jan 2025 16:50:09,561 INFO : 'PXD023738_PEAKS_5perc_PepLevel_reanalysis' (PXD023738_PEAKS_5perc_PepLevel_reanalysis.blib) library in 2 Skyline documents was built with 9 raw files; 1 peptide Id files. Status: VALID

20 Jan 2025 16:50:09,563 INFO : Validating spectral library: ARP_Serum_RA_enr_HD_DDA_Transfer_strict_1perc.blib

20 Jan 2025 16:50:34,600 INFO : 'ARP-Serum_RA_enr_HD-DDA_Transfer_strict_1perc' (ARP_Serum_RA_enr_HD_DDA_Transfer_strict_1perc.blib) library in 2 Skyline documents was built with 25 raw files; 1 peptide Id files. Status: VALID

20 Jan 2025 16:50:34,603 INFO : Validating spectral library: ARP_Serum_RA_enr_HD_DDA_Trap_strict_1perc.blib

20 Jan 2025 16:51:03,244 INFO : 'ARP-Serum_RA_enr_HD-DDA_Trap_strict_1perc' (ARP_Serum_RA_enr_HD_DDA_Trap_strict_1perc.blib) library in 2 Skyline documents was built with 30 raw files; 1 peptide Id files. Status: VALID

20 Jan 2025 16:51:03,246 INFO : Validating spectral library: ARP_Serum_RA_NonEnriched_Trap_PEAKS_PTM_AGES_1perc.blib

20 Jan 2025 16:51:09,680 INFO : 'ARP-Serum_RA_NonEnriched_Trap_PEAKS_PTM-AGES_1perc' (ARP_Serum_RA_NonEnriched_Trap_PEAKS_PTM_AGES_1perc.blib) library in 1 Skyline documents was built with 6 raw files; 1 peptide Id files. Status: VALID

20 Jan 2025 16:51:09,682 INFO : Validating spectral library: lcBHZ_Havelund_PD_MASCOT.blib

20 Jan 2025 16:51:27,251 INFO : 'lcBHZ_Havelund_PD_MASCOT' (lcBHZ_Havelund_PD_MASCOT.blib) library in 1 Skyline documents was built with 5 raw files; 5 peptide Id files. Status: VALID

20 Jan 2025 16:51:27,254 INFO : Validating spectral library: Synapt_NonEnriched_clinical_set_prosit.blib

20 Jan 2025 16:51:29,039 INFO : 'Synapt_NonEnriched_clinical_set_prosit' (Synapt_NonEnriched_clinical_set_prosit.blib) library in 1 Skyline documents was built with 1 raw files; 0 peptide Id files. Status: Prosit / Koina Library

20 Jan 2025 16:51:29,041 INFO :   MISSING FILES:

20 Jan 2025 16:51:29,041 INFO :     Spectrum File: Prositintensity_prosit_publication_v1

20 Jan 2025 16:51:29,042 INFO : Validating spectral library: lcBHZ_Havelund_PD_MASCOT_RepIon_removed.blib

20 Jan 2025 16:51:48,924 INFO : 'lcBHZ_Havelund_PD_MASCOT_RepIon_removed' (lcBHZ_Havelund_PD_MASCOT_RepIon_removed.blib) library in 1 Skyline documents was built with 5 raw files; 5 peptide Id files. Status: Missing spectrum  files.

20 Jan 2025 16:51:48,926 INFO :   MISSING FILES:

20 Jan 2025 16:51:48,926 INFO :     Spectrum File: Diag.removed_QHF0006.mgf

20 Jan 2025 16:51:48,926 INFO :     Spectrum File: Diag.removed_QHF0009.mgf

20 Jan 2025 16:51:48,926 INFO :     Spectrum File: Diag.removed_QHF0012.mgf

20 Jan 2025 16:51:48,926 INFO :     Spectrum File: Diag.removed_QHF0013.mgf

20 Jan 2025 16:51:48,926 INFO :     Spectrum File: Diag.removed_QHF0015.mgf

20 Jan 2025 16:51:48,927 INFO : Validating spectral library: ARP_Serum_clinical_enr_HD_DDA_Transfer_PrefList_C3H2N2O_1perc.blib

20 Jan 2025 16:52:12,889 INFO : 'ARP_Serum_clinical_enr_HD_DDA_Transfer_PrefList_C3H2N2O_1perc' (ARP_Serum_clinical_enr_HD_DDA_Transfer_PrefList_C3H2N2O_1perc.blib) library in 1 Skyline documents was built with 25 raw files; 1 peptide Id files. Status: VALID

20 Jan 2025 16:52:12,890 INFO : Spectral library validation complete.

20 Jan 2025 16:52:12,891 INFO : Data validation is complete. Status is IncompleteMetadata

20 Jan 2025 16:52:12,891 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.PxDataValidationTask'