Copying experiment: The proline-rich antimicrobial peptide Api137 disrupts assembly of the large ribosomal subunit inducing immature dead-end particles

U of Leipzig AG Bioanalytics - Api137_immature_ribo

Job Status

Created: 2024-03-28 10:11:05
Modified: 2024-03-28 10:11:13
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Copying experiment: The proline-rich antimicrobial peptide Api137 disrupts assembly of the large ribosomal subunit inducing immature dead-end particles
File Path: /data/labkey/files/Panorama Public/2024/U of Leipzig AG Bioanalytics - Api137_immature_ribo/@files/Experiment_1861.log
Files: Experiment_1861.log
Completed Runs: InGelDigest_2024-02-12_16-05-28.sky.zip

Log File


28 Mar 2024 10:11:05,186 INFO : Copying experiment "The proline-rich antimicrobial peptide Api137 disrupts assembly of the large ribosomal subunit inducing immature dead-end particles" from folder /U of Leipzig - AG Bioanalytics/Api137_immature_ribo to /Panorama Public/2024/U of Leipzig AG Bioanalytics - Api137_immature_ribo
28 Mar 2024 10:11:05,186 INFO : =======================================
28 Mar 2024 10:11:05,259 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
28 Mar 2024 10:11:05,259 INFO :
28 Mar 2024 10:11:05,259 INFO : Exporting experiment.
28 Mar 2024 10:11:06,424 INFO : Exporting files metadata.
28 Mar 2024 10:11:06,433 INFO :
28 Mar 2024 10:11:06,433 INFO : Experiment export completed successfully.
28 Mar 2024 10:11:06,433 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
28 Mar 2024 10:11:06,462 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
28 Mar 2024 10:11:06,462 INFO :
28 Mar 2024 10:11:06,462 INFO : Importing experiment.
28 Mar 2024 10:11:06,466 INFO : Loading folder properties (folder type, settings and active modules)
28 Mar 2024 10:11:06,548 INFO : Done importing folder properties (folder type, settings and active modules)
28 Mar 2024 10:11:06,549 INFO : Loading container specific module properties
28 Mar 2024 10:11:06,553 INFO : Done importing container specific module properties
28 Mar 2024 10:11:06,555 INFO : Loading queries
28 Mar 2024 10:11:06,559 INFO : 1 query imported
28 Mar 2024 10:11:06,559 INFO : Done importing queries
28 Mar 2024 10:11:06,560 INFO : Loading etl definitions
28 Mar 2024 10:11:06,561 INFO : Loading wikis
28 Mar 2024 10:11:06,563 INFO : 0 wikis imported
28 Mar 2024 10:11:06,563 INFO : Done importing wikis
28 Mar 2024 10:11:06,564 INFO : Starting Data Class Importer
28 Mar 2024 10:11:06,565 INFO : No types XAR file to process.
28 Mar 2024 10:11:06,565 INFO : Finished Data Class Importer
28 Mar 2024 10:11:06,565 INFO : Starting to copy files
28 Mar 2024 10:11:06,565 INFO : Copied 0 files
28 Mar 2024 10:11:06,565 INFO : Ensuring exp.data rows exist for imported files
28 Mar 2024 10:11:06,638 INFO : Starting Sample Type Importer
28 Mar 2024 10:11:06,638 INFO : No types XAR file to process.
28 Mar 2024 10:11:06,638 INFO : Finished Sample Type Importer
28 Mar 2024 10:11:06,640 INFO : Loading xar
28 Mar 2024 10:11:06,933 INFO : Starting import from InGelDigest_2024-02-12_16-05-28.sky.zip
28 Mar 2024 10:11:06,937 INFO : Starting to import Skyline document from InGelDigest_2024-02-12_16-05-28.sky.zip
28 Mar 2024 10:11:06,937 INFO : Expanding uniprot_EcoliPlus_4530seq_020724.protdb
28 Mar 2024 10:11:07,309 INFO : Expanding InGelDigest.blib
28 Mar 2024 10:11:07,315 INFO : Expanding InGelDigest.redundant.blib
28 Mar 2024 10:11:07,325 INFO : Expanding InGelDigest.skyd
28 Mar 2024 10:11:07,336 INFO : Expanding InGelDigest.sky.view
28 Mar 2024 10:11:07,364 INFO : Expanding InGelDigest.sky
28 Mar 2024 10:11:07,369 INFO : Expanding InGelDigest.skyl
28 Mar 2024 10:11:07,378 INFO : 1% Done
28 Mar 2024 10:11:08,096 INFO : Inserting sp|P00722|BGAL_ECOLI
28 Mar 2024 10:11:08,110 INFO : 2% Done
28 Mar 2024 10:11:08,121 INFO : 3% Done
28 Mar 2024 10:11:08,129 INFO : Inserting sp|P02931|OMPF_ECOLI
28 Mar 2024 10:11:08,140 INFO : Inserting sp|P03023|LACI_ECOLI
28 Mar 2024 10:11:08,146 INFO : 4% Done
28 Mar 2024 10:11:08,154 INFO : Inserting sp|P06996|OMPC_ECOLI
28 Mar 2024 10:11:08,160 INFO : 5% Done
28 Mar 2024 10:11:08,166 INFO : Inserting sp|P08506|DACC_ECOLI
28 Mar 2024 10:11:08,173 INFO : 6% Done
28 Mar 2024 10:11:08,182 INFO : Inserting sp|P08622|DNAJ_ECOLI
28 Mar 2024 10:11:08,188 INFO : 7% Done
28 Mar 2024 10:11:08,204 INFO : 8% Done
28 Mar 2024 10:11:08,213 INFO : 9% Done
28 Mar 2024 10:11:08,219 INFO : Inserting sp|P0A6B7|ISCS_ECOLI
28 Mar 2024 10:11:08,225 INFO : 10% Done
28 Mar 2024 10:11:08,240 INFO : Inserting sp|P0A6R3|FIS_ECOLI
28 Mar 2024 10:11:08,249 INFO : 11% Done
28 Mar 2024 10:11:08,257 INFO : Inserting sp|P0A705|IF2_ECOLI
28 Mar 2024 10:11:08,262 INFO : 12% Done
28 Mar 2024 10:11:08,269 INFO : Inserting sp|P0A7G6|RECA_ECOLI
28 Mar 2024 10:11:08,286 INFO : 13% Done
28 Mar 2024 10:11:08,295 INFO : 14% Done
28 Mar 2024 10:11:08,304 INFO : 15% Done
28 Mar 2024 10:11:08,312 INFO : 16% Done
28 Mar 2024 10:11:08,320 INFO : Inserting sp|P0A7K6|RL19_ECOLI
28 Mar 2024 10:11:08,326 INFO : 17% Done
28 Mar 2024 10:11:08,343 INFO : 18% Done
28 Mar 2024 10:11:08,352 INFO : 19% Done
28 Mar 2024 10:11:08,361 INFO : 20% Done
28 Mar 2024 10:11:08,372 INFO : 21% Done
28 Mar 2024 10:11:08,394 INFO : 22% Done
28 Mar 2024 10:11:08,394 INFO : Inserting sp|P0A7U7|RS20_ECOLI
28 Mar 2024 10:11:08,409 INFO : 23% Done
28 Mar 2024 10:11:08,418 INFO : 24% Done
28 Mar 2024 10:11:08,427 INFO : 25% Done
28 Mar 2024 10:11:08,441 INFO : Inserting sp|P0A7Z4|RPOA_ECOLI
28 Mar 2024 10:11:08,456 INFO : 26% Done
28 Mar 2024 10:11:08,465 INFO : 27% Done
28 Mar 2024 10:11:08,474 INFO : 28% Done
28 Mar 2024 10:11:08,484 INFO : 29% Done
28 Mar 2024 10:11:08,492 INFO : Inserting sp|P0A850|TIG_ECOLI
28 Mar 2024 10:11:08,506 INFO : 30% Done
28 Mar 2024 10:11:08,516 INFO : 31% Done
28 Mar 2024 10:11:08,526 INFO : 32% Done
28 Mar 2024 10:11:08,535 INFO : 33% Done
28 Mar 2024 10:11:08,542 INFO : Inserting sp|P0A855|TOLB_ECOLI
28 Mar 2024 10:11:08,555 INFO : 34% Done
28 Mar 2024 10:11:08,555 INFO : Inserting sp|P0A9A6|FTSZ_ECOLI
28 Mar 2024 10:11:08,566 INFO : Inserting sp|P0A9X4|MREB_ECOLI
28 Mar 2024 10:11:08,571 INFO : 35% Done
28 Mar 2024 10:11:08,578 INFO : Inserting sp|P0AA25|THIO_ECOLI
28 Mar 2024 10:11:08,583 INFO : 36% Done
28 Mar 2024 10:11:08,590 INFO : Inserting sp|P0AA39|RLUC_ECOLI
28 Mar 2024 10:11:08,595 INFO : 37% Done
28 Mar 2024 10:11:08,611 INFO : 38% Done
28 Mar 2024 10:11:08,620 INFO : 39% Done
28 Mar 2024 10:11:08,629 INFO : 40% Done
28 Mar 2024 10:11:08,644 INFO : Inserting sp|P0AA89|DOSC_ECOLI
28 Mar 2024 10:11:08,649 INFO : 41% Done
28 Mar 2024 10:11:08,656 INFO : Inserting sp|P0ABH9|CLPA_ECOLI
28 Mar 2024 10:11:08,661 INFO : 42% Done
28 Mar 2024 10:11:08,676 INFO : Inserting sp|P0AD70|AMPH_ECOLI
28 Mar 2024 10:11:08,682 INFO : 43% Done
28 Mar 2024 10:11:08,691 INFO : 44% Done
28 Mar 2024 10:11:08,698 INFO : Inserting sp|P0AEB2|DACA_ECOLI
28 Mar 2024 10:11:08,704 INFO : 45% Done
28 Mar 2024 10:11:08,714 INFO : 46% Done
28 Mar 2024 10:11:08,722 INFO : Inserting sp|P0AFP9|YBHR_ECOLI
28 Mar 2024 10:11:08,728 INFO : 47% Done
28 Mar 2024 10:11:08,735 INFO : Inserting sp|P0AG30|RHO_ECOLI
28 Mar 2024 10:11:08,747 INFO : Inserting sp|P0AG67|RS1_ECOLI
28 Mar 2024 10:11:08,753 INFO : 48% Done
28 Mar 2024 10:11:08,762 INFO : 49% Done
28 Mar 2024 10:11:08,770 INFO : 50% Done
28 Mar 2024 10:11:08,777 INFO : Inserting sp|P0CE47|EFTU1_ECOLI
28 Mar 2024 10:11:08,789 INFO : 51% Done
28 Mar 2024 10:11:08,789 INFO : Inserting sp|P0CE48|EFTU2_ECOLI
28 Mar 2024 10:11:08,801 INFO : Inserting sp|P23839|YICC_ECOLI
28 Mar 2024 10:11:08,807 INFO : 52% Done
28 Mar 2024 10:11:08,814 INFO : Inserting sp|P23878|FEPC_ECOLI
28 Mar 2024 10:11:08,820 INFO : 53% Done
28 Mar 2024 10:11:08,827 INFO : Inserting sp|P29131|FTSN_ECOLI
28 Mar 2024 10:11:08,832 INFO : 54% Done
28 Mar 2024 10:11:08,839 INFO : Inserting sp|P33136|OPGG_ECOLI
28 Mar 2024 10:11:08,844 INFO : 55% Done
28 Mar 2024 10:11:08,852 INFO : Inserting sp|P36979|RLMN_ECOLI
28 Mar 2024 10:11:08,865 INFO : 56% Done
28 Mar 2024 10:11:08,865 INFO : Inserting sp|P37650|BCSC_ECOLI
28 Mar 2024 10:11:08,877 INFO : Inserting sp|P37651|GUN_ECOLI
28 Mar 2024 10:11:08,882 INFO : 57% Done
28 Mar 2024 10:11:08,889 INFO : Inserting sp|P37744|RMLA1_ECOLI
28 Mar 2024 10:11:08,894 INFO : 58% Done
28 Mar 2024 10:11:08,902 INFO : Inserting sp|P39406|RSMC_ECOLI
28 Mar 2024 10:11:08,907 INFO : 59% Done
28 Mar 2024 10:11:08,915 INFO : Inserting sp|P42212|GFP_AEQVI
28 Mar 2024 10:11:08,928 INFO : 60% Done
28 Mar 2024 10:11:08,936 INFO : 61% Done
28 Mar 2024 10:11:08,953 INFO : 63% Done
28 Mar 2024 10:11:08,968 INFO : 64% Done
28 Mar 2024 10:11:08,985 INFO : 65% Done
28 Mar 2024 10:11:08,993 INFO : 66% Done
28 Mar 2024 10:11:09,001 INFO : 67% Done
28 Mar 2024 10:11:09,018 INFO : 68% Done
28 Mar 2024 10:11:09,026 INFO : Inserting sp|P42596|RLMG_ECOLI
28 Mar 2024 10:11:09,032 INFO : 69% Done
28 Mar 2024 10:11:09,047 INFO : 70% Done
28 Mar 2024 10:11:09,054 INFO : Inserting sp|P42641|OBG_ECOLI
28 Mar 2024 10:11:09,059 INFO : 71% Done
28 Mar 2024 10:11:09,066 INFO : Inserting sp|P60422|RL2_ECOLI
28 Mar 2024 10:11:09,072 INFO : 72% Done
28 Mar 2024 10:11:09,080 INFO : 73% Done
28 Mar 2024 10:11:09,088 INFO : Inserting sp|P64638|FEOC_ECOLI
28 Mar 2024 10:11:09,100 INFO : Inserting sp|P67430|NEMR_ECOLI
28 Mar 2024 10:11:09,106 INFO : 74% Done
28 Mar 2024 10:11:09,113 INFO : Inserting sp|P69776|LPP_ECOLI
28 Mar 2024 10:11:09,124 INFO : Inserting sp|P69831|PTKC_ECOLI
28 Mar 2024 10:11:09,130 INFO : 75% Done
28 Mar 2024 10:11:09,139 INFO : 76% Done
28 Mar 2024 10:11:09,146 INFO : Inserting sp|P75876|RLMI_ECOLI
28 Mar 2024 10:11:09,151 INFO : 77% Done
28 Mar 2024 10:11:09,167 INFO : 78% Done
28 Mar 2024 10:11:09,176 INFO : 79% Done
28 Mar 2024 10:11:09,183 INFO : Inserting sp|P75882|GFCD_ECOLI
28 Mar 2024 10:11:09,196 INFO : Inserting sp|P76585|YPHG_ECOLI
28 Mar 2024 10:11:09,202 INFO : 80% Done
28 Mar 2024 10:11:09,209 INFO : Inserting sp|P77774|BAMB_ECOLI
28 Mar 2024 10:11:09,214 INFO : 81% Done
28 Mar 2024 10:11:09,223 INFO : 82% Done
28 Mar 2024 10:11:09,230 INFO : Inserting sp|Q00042|TNPX_ECOLI
28 Mar 2024 10:11:09,235 INFO : 83% Done
28 Mar 2024 10:11:09,242 INFO : Inserting sp|Q57261|TRUD_ECOLI
28 Mar 2024 10:11:09,253 INFO : Inserting tr|B8LFD5|B8LFD5_ECOLI
28 Mar 2024 10:11:09,259 INFO : 84% Done
28 Mar 2024 10:11:09,265 INFO : Inserting tr|Q1PI90|Q1PI90_ECOLI
28 Mar 2024 10:11:09,271 INFO : 85% Done
28 Mar 2024 10:11:09,278 INFO : Inserting tr|X5DSL3|X5DSL3_ANAMA
28 Mar 2024 10:11:09,284 INFO : 86% Done
28 Mar 2024 10:11:09,302 INFO : 87% Done
28 Mar 2024 10:11:09,310 INFO : 88% Done
28 Mar 2024 10:11:09,319 INFO : 89% Done
28 Mar 2024 10:11:09,337 INFO : 90% Done
28 Mar 2024 10:11:09,346 INFO : 91% Done
28 Mar 2024 10:11:09,355 INFO : 92% Done
28 Mar 2024 10:11:09,372 INFO : 93% Done
28 Mar 2024 10:11:09,381 INFO : 94% Done
28 Mar 2024 10:11:09,390 INFO : 95% Done
28 Mar 2024 10:11:09,399 INFO : 96% Done
28 Mar 2024 10:11:09,413 INFO : 97% Done
28 Mar 2024 10:11:09,430 INFO : 98% Done
28 Mar 2024 10:11:09,439 INFO : Done parsing Skyline document.
28 Mar 2024 10:11:09,458 INFO : Creating and populating temp tables for Proportion values
28 Mar 2024 10:11:09,464 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
28 Mar 2024 10:11:09,490 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
28 Mar 2024 10:11:09,507 INFO : Cleaning up temp tables
28 Mar 2024 10:11:09,765 INFO : Completed import of Skyline document from InGelDigest_2024-02-12_16-05-28.sky.zip
28 Mar 2024 10:11:09,767 INFO : 100% Done
28 Mar 2024 10:11:09,777 INFO : Done importing xar
28 Mar 2024 10:11:09,778 INFO : Loading pages and webpart properties
28 Mar 2024 10:11:09,874 INFO : Done importing 3 page(s) with 6 webpart(s)
28 Mar 2024 10:11:09,874 INFO : Loading File Browser config
28 Mar 2024 10:11:09,874 INFO : Done importing File Browser config
28 Mar 2024 10:11:09,875 INFO : Starting Sample Status Data import
28 Mar 2024 10:11:09,876 INFO : No sample types XAR file to process.
28 Mar 2024 10:11:09,876 INFO : Finished importing Sample Status Data
28 Mar 2024 10:11:09,891 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
28 Mar 2024 10:11:09,898 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
28 Mar 2024 10:11:09,899 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
28 Mar 2024 10:11:09,899 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
28 Mar 2024 10:11:09,900 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
28 Mar 2024 10:11:09,904 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
28 Mar 2024 10:11:09,907 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
28 Mar 2024 10:11:09,920 INFO : Moving files to folder /Panorama Public/2024/U of Leipzig AG Bioanalytics - Api137_immature_ribo and creating symlinks
28 Mar 2024 10:11:09,970 INFO : Aligning data files urls in folder: /Panorama Public/2024/U of Leipzig AG Bioanalytics - Api137_immature_ribo
28 Mar 2024 10:11:09,978 INFO : Importing files metadata.
28 Mar 2024 10:11:09,979 INFO :
28 Mar 2024 10:11:09,979 INFO : Experiment import completed successfully.
28 Mar 2024 10:11:09,979 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
28 Mar 2024 10:11:10,006 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
28 Mar 2024 10:11:10,006 INFO :
28 Mar 2024 10:11:10,006 INFO : Checking for library folders.
28 Mar 2024 10:11:10,008 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
28 Mar 2024 10:11:10,034 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
28 Mar 2024 10:11:10,034 INFO :
28 Mar 2024 10:11:10,034 INFO : Finishing up experiment copy.
28 Mar 2024 10:11:10,036 INFO : Updating TargetedMS experiment entry in target folder /Panorama Public/2024/U of Leipzig AG Bioanalytics - Api137_immature_ribo
28 Mar 2024 10:11:10,037 INFO : Setting version on new experiment to 1
28 Mar 2024 10:11:10,039 INFO : Updating permanent link to point to the new copy of the data.
28 Mar 2024 10:11:10,103 INFO : Removing copy permissions given to Panorama Public
28 Mar 2024 10:11:10,107 INFO : Adding read permissions to all users that are folder admins in the source folder.
28 Mar 2024 10:11:10,108 INFO : Assigning ReaderRole to daniela.volke@bbz.uni-leipzig.de
28 Mar 2024 10:11:10,108 INFO : Assigning ReaderRole to ralf.hoffmann@bbz.uni-leipzig.de
28 Mar 2024 10:11:10,108 INFO : Assigning PanoramaPublicSubmitterRole to daniela.volke@bbz.uni-leipzig.de
28 Mar 2024 10:11:10,108 INFO : Assigning PanoramaPublicSubmitterRole to ralf.hoffmann@bbz.uni-leipzig.de
28 Mar 2024 10:11:10,117 INFO : User daniela.volke@bbz.uni-leipzig.de is already a member of group Panorama Public Submitters
28 Mar 2024 10:11:10,117 INFO : User ralf.hoffmann@bbz.uni-leipzig.de is already a member of group Panorama Public Submitters
28 Mar 2024 10:11:10,117 INFO : Updating the 'Raw Data' tab configuration
28 Mar 2024 10:11:10,119 INFO : Creating a reviewer account.
28 Mar 2024 10:11:10,189 INFO : Created reviewer with email: panorama+reviewer251@proteinms.net
28 Mar 2024 10:11:10,189 INFO : Generating password.
28 Mar 2024 10:11:10,327 INFO : Set reviewer password successfully.
28 Mar 2024 10:11:10,335 INFO : Adding user panorama+reviewer251@proteinms.net to group Reviewers
28 Mar 2024 10:11:10,336 INFO : Hiding the Data Pipeline tab.
28 Mar 2024 10:11:10,341 INFO : Updating Submission. Setting copiedExperimentId to 1789
28 Mar 2024 10:11:12,096 INFO : Assigning a ProteomeXchange ID.
28 Mar 2024 10:11:12,464 INFO : Assigned ProteomeXchange ID: PXD051066
28 Mar 2024 10:11:12,464 INFO : Assigning a DOI.
28 Mar 2024 10:11:13,340 INFO : Assigned DOI: 10.6069/8n7n-7r74
28 Mar 2024 10:11:13,470 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'