30 May 2024 19:20:14,184 INFO : Validating data for a ProteomeXchange submission.
30 May 2024 19:20:14,185 INFO : =======================================
30 May 2024 19:20:14,197 DEBUG: Resetting Job ID: bd0f7a5a-0121-103d-b086-dc22ffcda54f
30 May 2024 19:20:14,216 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.PxDataValidationTask' at location 'webserver'
30 May 2024 19:20:14,217 INFO : Validating data for experiment Id: 1842, validation Id: 961
30 May 2024 19:20:14,290 INFO : Validating data for 17 Skyline documents in 3 folders
30 May 2024 19:20:14,330 INFO : Sample file validation for Skyline document: P1_Neo_100SPD_Unscheduled_2024-05-16_23-14-13.sky.zip
30 May 2024 19:20:14,330 INFO : Found all sample files.
30 May 2024 19:20:14,360 INFO : Sample file validation for Skyline document: P1_Neo_60SPD_Unscheduled_2024-05-16_23-19-22.sky.zip
30 May 2024 19:20:14,360 INFO : Found all sample files.
30 May 2024 19:20:14,369 INFO : Sample file validation for Skyline document: P1_Neo_100SPD_ToAlign_Refined_2024-05-29_14-11-54.sky.zip
30 May 2024 19:20:14,369 INFO : Found all sample files.
30 May 2024 19:20:14,371 INFO : Sample file validation for Skyline document: P1_Neo_60SPD_ToAlign_Refined_2024-05-29_14-12-54.sky.zip
30 May 2024 19:20:14,371 INFO : Found all sample files.
30 May 2024 19:20:14,405 INFO : Sample file validation for Skyline document: P1_Neo_100SPD_Replicates_2024-05-29_14-13-46.sky.zip
30 May 2024 19:20:14,405 INFO : Found all sample files.
30 May 2024 19:20:14,434 INFO : Sample file validation for Skyline document: P1_Neo_60SPD_Replicates_2024-05-29_14-14-47.sky.zip
30 May 2024 19:20:14,434 INFO : Found all sample files.
30 May 2024 19:20:14,551 INFO : Sample file validation for Skyline document: P1_Neo_100SPD_DilutionCurve_Adjust_Bounds_Opt_Trans_2024-05-29_14-15-58.sky.zip
30 May 2024 19:20:14,551 INFO : Found all sample files.
30 May 2024 19:20:14,597 INFO : Sample file validation for Skyline document: P1_Neo_60SPD_DilutionCurve_Adjust_Bounds_Opt_Trans_2024-05-29_14-17-24.sky.zip
30 May 2024 19:20:14,597 INFO : Found all sample files.
30 May 2024 19:20:14,604 INFO : Sample file validation for Skyline document: ecoli_large_replicates_2024-05-18_09-59-07.sky.zip
30 May 2024 19:20:14,604 INFO : Found all sample files.
30 May 2024 19:20:14,632 INFO : Sample file validation for Skyline document: ecoli_small_replicates_2024-05-18_10-00-01.sky.zip
30 May 2024 19:20:14,632 INFO : Found all sample files.
30 May 2024 19:20:14,712 INFO : Sample file validation for Skyline document: ecoli_large_dilution_adj_bounds_opt_trans_2024-05-18_10-01-04.sky.zip
30 May 2024 19:20:14,712 INFO : Found all sample files.
30 May 2024 19:20:14,759 INFO : Sample file validation for Skyline document: ecoli_small_dilution_adj_bounds_opt_trans_2024-05-18_10-03-15.sky.zip
30 May 2024 19:20:14,759 INFO : Found all sample files.
30 May 2024 19:20:14,774 INFO : Sample file validation for Skyline document: ecolihela_gpf_2024-05-18_10-05-17.sky.zip
30 May 2024 19:20:14,775 INFO : Found all sample files.
30 May 2024 19:20:14,789 INFO : Sample file validation for Skyline document: ecoli_subset_fulllib_2024-05-18_10-07-03.sky.zip
30 May 2024 19:20:14,790 INFO : Found all sample files.
30 May 2024 19:20:14,805 INFO : Sample file validation for Skyline document: ecoli_subset_fulllib_refined_2024-05-18_10-16-34.sky.zip
30 May 2024 19:20:14,805 INFO : Found all sample files.
30 May 2024 19:20:14,822 INFO : Sample file validation for Skyline document: 220224_altis_top5_2024-05-17_20-18-34.sky.zip
30 May 2024 19:20:14,822 INFO : Found all sample files.
30 May 2024 19:20:14,855 INFO : Sample file validation for Skyline document: 220220_prm_2min_opt_transitions_1overx_2024-05-29_14-25-22.sky.zip
30 May 2024 19:20:14,855 INFO : Found all sample files.
30 May 2024 19:20:15,036 INFO : Modifications validation:
30 May 2024 19:20:15,036 INFO : VALID MODIFICATIONS:
30 May 2024 19:20:15,036 INFO : 6388: Carbamidomethyl (C): UNIMOD:4 - Carbamidomethyl
30 May 2024 19:20:15,037 INFO : 220220_prm_2min_opt_transitions_1overx_2024-05-29_14-25-22.sky.zip
30 May 2024 19:20:15,037 INFO : 220224_altis_top5_2024-05-17_20-18-34.sky.zip
30 May 2024 19:20:15,037 INFO : P1_Neo_60SPD_ToAlign_Refined_2024-05-29_14-12-54.sky.zip
30 May 2024 19:20:15,037 INFO : P1_Neo_100SPD_ToAlign_Refined_2024-05-29_14-11-54.sky.zip
30 May 2024 19:20:15,037 INFO : P1_Neo_60SPD_Unscheduled_2024-05-16_23-19-22.sky.zip
30 May 2024 19:20:15,037 INFO : P1_Neo_100SPD_Unscheduled_2024-05-16_23-14-13.sky.zip
30 May 2024 19:20:15,037 INFO : P1_Neo_60SPD_DilutionCurve_Adjust_Bounds_Opt_Trans_2024-05-29_14-17-24.sky.zip
30 May 2024 19:20:15,037 INFO : P1_Neo_100SPD_DilutionCurve_Adjust_Bounds_Opt_Trans_2024-05-29_14-15-58.sky.zip
30 May 2024 19:20:15,037 INFO : P1_Neo_60SPD_Replicates_2024-05-29_14-14-47.sky.zip
30 May 2024 19:20:15,037 INFO : P1_Neo_100SPD_Replicates_2024-05-29_14-13-46.sky.zip
30 May 2024 19:20:15,037 INFO : ecoli_large_dilution_adj_bounds_opt_trans_2024-05-18_10-01-04.sky.zip
30 May 2024 19:20:15,037 INFO : ecoli_small_replicates_2024-05-18_10-00-01.sky.zip
30 May 2024 19:20:15,037 INFO : ecoli_large_replicates_2024-05-18_09-59-07.sky.zip
30 May 2024 19:20:15,037 INFO : ecoli_subset_fulllib_refined_2024-05-18_10-16-34.sky.zip
30 May 2024 19:20:15,037 INFO : ecoli_subset_fulllib_2024-05-18_10-07-03.sky.zip
30 May 2024 19:20:15,037 INFO : ecolihela_gpf_2024-05-18_10-05-17.sky.zip
30 May 2024 19:20:15,037 INFO : ecoli_small_dilution_adj_bounds_opt_trans_2024-05-18_10-03-15.sky.zip
30 May 2024 19:20:15,037 INFO : 6389: Oxidation (M): UNIMOD:35 - Oxidation
30 May 2024 19:20:15,037 INFO : ecoli_large_dilution_adj_bounds_opt_trans_2024-05-18_10-01-04.sky.zip
30 May 2024 19:20:15,037 INFO : ecoli_small_replicates_2024-05-18_10-00-01.sky.zip
30 May 2024 19:20:15,037 INFO : ecoli_large_replicates_2024-05-18_09-59-07.sky.zip
30 May 2024 19:20:15,037 INFO : ecoli_subset_fulllib_refined_2024-05-18_10-16-34.sky.zip
30 May 2024 19:20:15,037 INFO : ecoli_subset_fulllib_2024-05-18_10-07-03.sky.zip
30 May 2024 19:20:15,037 INFO : ecolihela_gpf_2024-05-18_10-05-17.sky.zip
30 May 2024 19:20:15,037 INFO : ecoli_small_dilution_adj_bounds_opt_trans_2024-05-18_10-03-15.sky.zip
30 May 2024 19:20:15,037 INFO : 6390: Label:13C(6)15N(2) (C-term K):
30 May 2024 19:20:15,037 INFO : P1_Neo_60SPD_ToAlign_Refined_2024-05-29_14-12-54.sky.zip
30 May 2024 19:20:15,037 INFO : P1_Neo_100SPD_ToAlign_Refined_2024-05-29_14-11-54.sky.zip
30 May 2024 19:20:15,037 INFO : P1_Neo_60SPD_Unscheduled_2024-05-16_23-19-22.sky.zip
30 May 2024 19:20:15,037 INFO : P1_Neo_100SPD_Unscheduled_2024-05-16_23-14-13.sky.zip
30 May 2024 19:20:15,037 INFO : P1_Neo_60SPD_DilutionCurve_Adjust_Bounds_Opt_Trans_2024-05-29_14-17-24.sky.zip
30 May 2024 19:20:15,037 INFO : P1_Neo_100SPD_DilutionCurve_Adjust_Bounds_Opt_Trans_2024-05-29_14-15-58.sky.zip
30 May 2024 19:20:15,038 INFO : P1_Neo_60SPD_Replicates_2024-05-29_14-14-47.sky.zip
30 May 2024 19:20:15,038 INFO : P1_Neo_100SPD_Replicates_2024-05-29_14-13-46.sky.zip
30 May 2024 19:20:15,038 INFO : 6391: Label:13C(6)15N(4) (C-term R):
30 May 2024 19:20:15,038 INFO : P1_Neo_60SPD_ToAlign_Refined_2024-05-29_14-12-54.sky.zip
30 May 2024 19:20:15,038 INFO : P1_Neo_100SPD_ToAlign_Refined_2024-05-29_14-11-54.sky.zip
30 May 2024 19:20:15,038 INFO : P1_Neo_60SPD_Unscheduled_2024-05-16_23-19-22.sky.zip
30 May 2024 19:20:15,038 INFO : P1_Neo_100SPD_Unscheduled_2024-05-16_23-14-13.sky.zip
30 May 2024 19:20:15,038 INFO : P1_Neo_60SPD_DilutionCurve_Adjust_Bounds_Opt_Trans_2024-05-29_14-17-24.sky.zip
30 May 2024 19:20:15,038 INFO : P1_Neo_100SPD_DilutionCurve_Adjust_Bounds_Opt_Trans_2024-05-29_14-15-58.sky.zip
30 May 2024 19:20:15,038 INFO : P1_Neo_60SPD_Replicates_2024-05-29_14-14-47.sky.zip
30 May 2024 19:20:15,038 INFO : P1_Neo_100SPD_Replicates_2024-05-29_14-13-46.sky.zip
30 May 2024 19:20:15,038 INFO : 6392: L-7:
30 May 2024 19:20:15,038 INFO : P1_Neo_60SPD_ToAlign_Refined_2024-05-29_14-12-54.sky.zip
30 May 2024 19:20:15,038 INFO : P1_Neo_100SPD_ToAlign_Refined_2024-05-29_14-11-54.sky.zip
30 May 2024 19:20:15,038 INFO : P1_Neo_60SPD_Unscheduled_2024-05-16_23-19-22.sky.zip
30 May 2024 19:20:15,038 INFO : P1_Neo_100SPD_Unscheduled_2024-05-16_23-14-13.sky.zip
30 May 2024 19:20:15,038 INFO : P1_Neo_60SPD_DilutionCurve_Adjust_Bounds_Opt_Trans_2024-05-29_14-17-24.sky.zip
30 May 2024 19:20:15,038 INFO : P1_Neo_60SPD_Replicates_2024-05-29_14-14-47.sky.zip
30 May 2024 19:20:15,038 INFO : P1_Neo_100SPD_Replicates_2024-05-29_14-13-46.sky.zip
30 May 2024 19:20:15,038 INFO : INVALID MODIFICATIONS (No Unimod ID):
30 May 2024 19:20:15,039 INFO : Validating spectral library: ecoli_small_dilution_adj_bounds_opt_trans.blib
30 May 2024 19:20:15,073 INFO : 'ecoli_small_dilution_adj_bounds_opt_trans' (ecoli_small_dilution_adj_bounds_opt_trans.blib) library in 1 Skyline documents was built with 5 raw files; 1 peptide Id files. Status: VALID
30 May 2024 19:20:15,074 INFO : Validating spectral library: ecoli_subset_fulllib_refined.blib
30 May 2024 19:20:15,102 INFO : 'ecoli_subset_fulllib_refined' (ecoli_subset_fulllib_refined.blib) library in 1 Skyline documents was built with 5 raw files; 1 peptide Id files. Status: VALID
30 May 2024 19:20:15,103 INFO : Validating spectral library: ecolihela_gpf.blib
30 May 2024 19:20:15,131 INFO : 'ecolihela_gpf' (ecolihela_gpf.blib) library in 1 Skyline documents was built with 5 raw files; 1 peptide Id files. Status: VALID
30 May 2024 19:20:15,132 INFO : Validating spectral library: ecoli_subset_fulllib.blib
30 May 2024 19:20:15,160 INFO : 'ecoli_subset_fulllib' (ecoli_subset_fulllib.blib) library in 1 Skyline documents was built with 5 raw files; 1 peptide Id files. Status: VALID
30 May 2024 19:20:15,161 INFO : Validating spectral library: ecoli_large_dilution_adj_bounds_opt_trans.blib
30 May 2024 19:20:15,228 INFO : 'ecoli_large_dilution_adj_bounds_opt_trans' (ecoli_large_dilution_adj_bounds_opt_trans.blib) library in 1 Skyline documents was built with 5 raw files; 1 peptide Id files. Status: VALID
30 May 2024 19:20:15,229 INFO : Validating spectral library: 220220_prm_2min_opt_transitions_1overx.blib
30 May 2024 19:20:15,240 INFO : '220220_prm_2min_opt_transitions_1overx' (220220_prm_2min_opt_transitions_1overx.blib) library in 1 Skyline documents was built with 4 raw files; 0 peptide Id files. Status: Missing peptide ID file names in the .blib file.
30 May 2024 19:20:15,241 INFO : Validating spectral library: pq500_100spd.blib
30 May 2024 19:20:15,268 INFO : 'PQ500 100 SPD' (pq500_100spd.blib) library in 3 Skyline documents was built with 4 raw files; 0 peptide Id files. Status: Missing spectrum files. Missing peptide ID file names in the .blib file.
30 May 2024 19:20:15,268 INFO : MISSING FILES:
30 May 2024 19:20:15,268 INFO : Spectrum File: P1_Neo_100SPD_ToAlign_Refined.sky
30 May 2024 19:20:15,268 INFO : Validating spectral library: pq500_60spd.blib
30 May 2024 19:20:15,283 INFO : 'PQ500 60SPD' (pq500_60spd.blib) library in 1 Skyline documents was built with 3 raw files; 0 peptide Id files. Status: Missing spectrum files. Missing peptide ID file names in the .blib file.
30 May 2024 19:20:15,283 INFO : MISSING FILES:
30 May 2024 19:20:15,283 INFO : Spectrum File: P1_Neo_60SPD_ToAlign_Refined.sky
30 May 2024 19:20:15,284 INFO : Validating spectral library: ecoli_large_replicates.blib
30 May 2024 19:20:15,312 INFO : 'ecoli_large_replicates' (ecoli_large_replicates.blib) library in 1 Skyline documents was built with 5 raw files; 1 peptide Id files. Status: VALID
30 May 2024 19:20:15,313 INFO : Validating spectral library: ecoli_small_replicates.blib
30 May 2024 19:20:15,341 INFO : 'ecoli_small_replicates' (ecoli_small_replicates.blib) library in 1 Skyline documents was built with 5 raw files; 1 peptide Id files. Status: VALID
30 May 2024 19:20:15,341 INFO : Validating spectral library: PQ500_Prosit.blib
30 May 2024 19:20:15,350 INFO : 'PQ500 Prosit' (PQ500_Prosit.blib) library in 2 Skyline documents was built with 1 raw files; 0 peptide Id files. Status: Prosit Library
30 May 2024 19:20:15,350 INFO : MISSING FILES:
30 May 2024 19:20:15,350 INFO : Spectrum File: Prositintensity_prosit_publication_v1
30 May 2024 19:20:15,351 INFO : Validating spectral library: pq500_60spd.blib
30 May 2024 19:20:15,367 INFO : 'PQ500 60 SPD' (pq500_60spd.blib) library in 2 Skyline documents was built with 3 raw files; 0 peptide Id files. Status: Missing spectrum files. Missing peptide ID file names in the .blib file.
30 May 2024 19:20:15,367 INFO : MISSING FILES:
30 May 2024 19:20:15,367 INFO : Spectrum File: P1_Neo_60SPD_ToAlign_Refined.sky
30 May 2024 19:20:15,367 INFO : Spectral library validation complete.
30 May 2024 19:20:15,368 INFO : Data validation is complete. Status is IncompleteMetadata
30 May 2024 19:20:15,368 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.PxDataValidationTask'