Copying experiment: Targeted MS validation of huntingtin protein interaction signatures in Huntington's disease mouse models

Princeton University Cristea Lab - eHTT PPI PRM

Job Status

Created: 2024-04-12 10:40:21
Modified: 2024-04-12 10:40:47
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Copying experiment: Targeted MS validation of huntingtin protein interaction signatures in Huntington's disease mouse models
File Path: /data/labkey/files/Panorama Public/2024/Princeton University Cristea Lab - eHTT PPI PRM/@files/Experiment_1885.log
Files: Experiment_1885.log
Completed Runs: 2021_02_HTT_PPI_PRM_Candidates_R-final_noIgG_eHTT_Validation_2024-04-11_12-30-03.sky.zip

Log File


12 Apr 2024 10:40:21,084 INFO : Copying experiment "Targeted MS validation of huntingtin protein interaction signatures in Huntington's disease mouse models" from folder /Princeton University - Cristea Lab/eHTT PPI PRM to /Panorama Public/2024/Princeton University Cristea Lab - eHTT PPI PRM
12 Apr 2024 10:40:21,084 INFO : =======================================
12 Apr 2024 10:40:21,265 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
12 Apr 2024 10:40:21,265 INFO :
12 Apr 2024 10:40:21,265 INFO : Exporting experiment.
12 Apr 2024 10:40:30,406 INFO : Exporting files metadata.
12 Apr 2024 10:40:30,455 INFO :
12 Apr 2024 10:40:30,455 INFO : Experiment export completed successfully.
12 Apr 2024 10:40:30,455 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
12 Apr 2024 10:40:30,560 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
12 Apr 2024 10:40:30,560 INFO :
12 Apr 2024 10:40:30,560 INFO : Importing experiment.
12 Apr 2024 10:40:30,585 INFO : Loading folder properties (folder type, settings and active modules)
12 Apr 2024 10:40:30,666 INFO : Done importing folder properties (folder type, settings and active modules)
12 Apr 2024 10:40:30,667 INFO : Loading container specific module properties
12 Apr 2024 10:40:30,671 INFO : Done importing container specific module properties
12 Apr 2024 10:40:30,672 INFO : Loading queries
12 Apr 2024 10:40:30,692 INFO : 1 query imported
12 Apr 2024 10:40:30,692 INFO : Done importing queries
12 Apr 2024 10:40:30,693 INFO : Loading etl definitions
12 Apr 2024 10:40:30,695 INFO : Loading wikis
12 Apr 2024 10:40:30,696 INFO : 0 wikis imported
12 Apr 2024 10:40:30,696 INFO : Done importing wikis
12 Apr 2024 10:40:30,697 INFO : Starting Data Class Importer
12 Apr 2024 10:40:30,697 INFO : No types XAR file to process.
12 Apr 2024 10:40:30,697 INFO : Finished Data Class Importer
12 Apr 2024 10:40:30,698 INFO : Starting to copy files
12 Apr 2024 10:40:30,698 INFO : Copied 0 files
12 Apr 2024 10:40:30,698 INFO : Ensuring exp.data rows exist for imported files
12 Apr 2024 10:40:31,042 INFO : Starting Sample Type Importer
12 Apr 2024 10:40:31,043 INFO : No types XAR file to process.
12 Apr 2024 10:40:31,043 INFO : Finished Sample Type Importer
12 Apr 2024 10:40:31,044 INFO : Loading xar
12 Apr 2024 10:40:33,508 INFO : Starting import from 2021_02_HTT_PPI_PRM_Candidates_R-final_noIgG_eHTT_Validation_2024-04-11_12-30-03.sky.zip
12 Apr 2024 10:40:33,511 INFO : Starting to import Skyline document from 2021_02_HTT_PPI_PRM_Candidates_R-final_noIgG_eHTT_Validation_2024-04-11_12-30-03.sky.zip
12 Apr 2024 10:40:33,513 INFO : Expanding human_herpesvirus_background.protdb
12 Apr 2024 10:40:36,302 INFO : Expanding 20230529_HTT_IP_sPRM.blib
12 Apr 2024 10:40:36,362 INFO : Expanding 2021_02_HTT_PPI_PRM_Candidates_R-final_noIgG_eHTT_Validation.skyd
12 Apr 2024 10:40:36,750 INFO : Expanding 2021_02_HTT_PPI_PRM_Candidates_R-final_noIgG_eHTT_Validation.sky.view
12 Apr 2024 10:40:36,753 INFO : Expanding 2021_02_HTT_PPI_PRM_Candidates_R-final_noIgG_eHTT_Validation.sky
12 Apr 2024 10:40:36,757 INFO : Expanding 2021_02_HTT_PPI_PRM_Candidates_R-final_noIgG_eHTT_Validation.skyl
12 Apr 2024 10:40:36,769 INFO : Reading Skyline file, 2021_02_HTT_PPI_PRM_Candidates_R-final_noIgG_eHTT_Validation.sky, to determine if the TransitionChromInfos in the document should be stored...
12 Apr 2024 10:40:36,775 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
12 Apr 2024 10:40:36,776 WARN : The version of this Skyline document is 23.12. This is newer than the highest supported version 23.1
12 Apr 2024 10:40:36,779 INFO : 14% Done
12 Apr 2024 10:40:38,075 INFO : Inserting sp|Q61290|CAC1E_MOUSE
12 Apr 2024 10:40:38,307 INFO : 32% Done
12 Apr 2024 10:40:38,447 INFO : Inserting sp|Q9DBD5|PELP1_MOUSE
12 Apr 2024 10:40:38,614 INFO : 48% Done
12 Apr 2024 10:40:38,768 INFO : 49% Done
12 Apr 2024 10:40:38,769 INFO : Inserting sp|P45481|CBP_MOUSE
12 Apr 2024 10:40:38,937 INFO : 63% Done
12 Apr 2024 10:40:39,070 INFO : Inserting sp|Q8CGF7|TCRG1_MOUSE
12 Apr 2024 10:40:39,247 INFO : 80% Done
12 Apr 2024 10:40:39,349 INFO : Done parsing Skyline document.
12 Apr 2024 10:40:39,393 INFO : Calculating fold changes
12 Apr 2024 10:40:39,612 INFO : 98% Done
12 Apr 2024 10:40:39,612 INFO : Done calculating fold changes.
12 Apr 2024 10:40:41,257 INFO : Creating and populating temp tables for Proportion values
12 Apr 2024 10:40:41,287 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
12 Apr 2024 10:40:41,331 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
12 Apr 2024 10:40:41,360 INFO : Cleaning up temp tables
12 Apr 2024 10:40:41,672 INFO : Completed import of Skyline document from 2021_02_HTT_PPI_PRM_Candidates_R-final_noIgG_eHTT_Validation_2024-04-11_12-30-03.sky.zip
12 Apr 2024 10:40:41,674 INFO : 100% Done
12 Apr 2024 10:40:41,681 INFO : Done importing xar
12 Apr 2024 10:40:41,682 INFO : Loading pages and webpart properties
12 Apr 2024 10:40:41,745 INFO : Done importing 3 page(s) with 5 webpart(s)
12 Apr 2024 10:40:41,745 INFO : Loading File Browser config
12 Apr 2024 10:40:41,746 INFO : Done importing File Browser config
12 Apr 2024 10:40:41,747 INFO : Starting Sample Status Data import
12 Apr 2024 10:40:41,747 INFO : No sample types XAR file to process.
12 Apr 2024 10:40:41,747 INFO : Finished importing Sample Status Data
12 Apr 2024 10:40:41,752 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
12 Apr 2024 10:40:41,755 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
12 Apr 2024 10:40:41,755 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
12 Apr 2024 10:40:41,756 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
12 Apr 2024 10:40:41,756 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
12 Apr 2024 10:40:41,757 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
12 Apr 2024 10:40:41,759 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
12 Apr 2024 10:40:41,841 INFO : Moving files to folder /Panorama Public/2024/Princeton University Cristea Lab - eHTT PPI PRM and creating symlinks
12 Apr 2024 10:40:42,299 INFO : Aligning data files urls in folder: /Panorama Public/2024/Princeton University Cristea Lab - eHTT PPI PRM
12 Apr 2024 10:40:42,348 INFO : Importing files metadata.
12 Apr 2024 10:40:42,349 INFO :
12 Apr 2024 10:40:42,349 INFO : Experiment import completed successfully.
12 Apr 2024 10:40:42,349 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
12 Apr 2024 10:40:42,399 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
12 Apr 2024 10:40:42,399 INFO :
12 Apr 2024 10:40:42,399 INFO : Checking for library folders.
12 Apr 2024 10:40:42,400 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
12 Apr 2024 10:40:42,419 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
12 Apr 2024 10:40:42,419 INFO :
12 Apr 2024 10:40:42,419 INFO : Finishing up experiment copy.
12 Apr 2024 10:40:42,420 INFO : Updating TargetedMS experiment entry in target folder /Panorama Public/2024/Princeton University Cristea Lab - eHTT PPI PRM
12 Apr 2024 10:40:42,421 INFO : Setting version on new experiment to 1
12 Apr 2024 10:40:42,424 INFO : Updating permanent link to point to the new copy of the data.
12 Apr 2024 10:40:42,510 INFO : Removing copy permissions given to Panorama Public
12 Apr 2024 10:40:42,531 INFO : Adding read permissions to all users that are folder admins in the source folder.
12 Apr 2024 10:40:42,532 INFO : Assigning ReaderRole to nat@proteinms.net
12 Apr 2024 10:40:42,532 INFO : Assigning ReaderRole to joel.federspiel@princeton.edu
12 Apr 2024 10:40:42,532 INFO : Assigning ReaderRole to mtyl@princeton.edu
12 Apr 2024 10:40:42,532 INFO : Assigning ReaderRole to josiahh@princeton.edu
12 Apr 2024 10:40:42,532 INFO : Assigning ReaderRole to daweiliu@princeton.edu
12 Apr 2024 10:40:42,532 INFO : Assigning ReaderRole to tgreco@princeton.edu
12 Apr 2024 10:40:42,532 INFO : Assigning ReaderRole to mak4@princeton.edu
12 Apr 2024 10:40:42,532 INFO : Assigning ReaderRole to icristea@princeton.edu
12 Apr 2024 10:40:42,532 INFO : Assigning ReaderRole to th12@princeton.edu
12 Apr 2024 10:40:42,532 INFO : Assigning ReaderRole to katelync@princeton.edu
12 Apr 2024 10:40:42,532 INFO : Assigning ReaderRole to corab@princeton.edu
12 Apr 2024 10:40:42,532 INFO : Assigning ReaderRole to klum@princeton.edu
12 Apr 2024 10:40:42,532 INFO : Assigning ReaderRole to jkostas@princeton.edu
12 Apr 2024 10:40:42,532 INFO : Assigning ReaderRole to tjreed@princeton.edu
12 Apr 2024 10:40:42,532 INFO : Assigning ReaderRole to jp1381@princeton.edu
12 Apr 2024 10:40:42,532 INFO : Assigning ReaderRole to jinhang.yang@princeton.edu
12 Apr 2024 10:40:42,532 INFO : Assigning ReaderRole to wah2@princeton.edu
12 Apr 2024 10:40:42,532 INFO : Assigning ReaderRole to pmetzger@princeton.edu
12 Apr 2024 10:40:42,532 INFO : Assigning ReaderRole to bokais@princeton.edu
12 Apr 2024 10:40:42,533 INFO : Assigning PanoramaPublicSubmitterRole to tgreco@princeton.edu
12 Apr 2024 10:40:42,533 INFO : Assigning PanoramaPublicSubmitterRole to icristea@princeton.edu
12 Apr 2024 10:40:42,592 INFO : User tgreco@princeton.edu is already a member of group Panorama Public Submitters
12 Apr 2024 10:40:42,593 INFO : User icristea@princeton.edu is already a member of group Panorama Public Submitters
12 Apr 2024 10:40:42,593 INFO : Updating the 'Raw Data' tab configuration
12 Apr 2024 10:40:42,613 INFO : Creating a reviewer account.
12 Apr 2024 10:40:42,726 INFO : Created reviewer with email: panorama+reviewer254@proteinms.net
12 Apr 2024 10:40:42,726 INFO : Generating password.
12 Apr 2024 10:40:42,917 INFO : Set reviewer password successfully.
12 Apr 2024 10:40:43,028 INFO : Adding user panorama+reviewer254@proteinms.net to group Reviewers
12 Apr 2024 10:40:43,060 INFO : Hiding the Data Pipeline tab.
12 Apr 2024 10:40:43,065 INFO : Updating Submission. Setting copiedExperimentId to 1798
12 Apr 2024 10:40:45,163 INFO : Assigning a ProteomeXchange ID.
12 Apr 2024 10:40:46,762 INFO : Assigned ProteomeXchange ID: PXD051407
12 Apr 2024 10:40:46,763 INFO : Assigning a DOI.
12 Apr 2024 10:40:47,594 INFO : Assigned DOI: 10.6069/8rfb-ge74
12 Apr 2024 10:40:47,823 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'