Copying experiment: A framework for quality control in quantitative proteomics

MacCoss - Sample QC and System Suitability

Job Status

Created: 2024-04-09 15:11:07
Modified: 2024-04-09 15:13:07
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Copying experiment: A framework for quality control in quantitative proteomics
File Path: /data/labkey/files/Panorama Public/2024/MacCoss - Sample QC and System Suitability/@files/Experiment_1881.log
Files: Experiment_1881.log
Completed Runs: figure3_PRM_system_suitability.sky.zip
figure2_PRM_system_suitability_2024-02-02_13-59-23.sky.zip
figure4_DIA_samples.sky.zip
figure4_PRM_system_suitability.sky.zip
figure5_PRM_system_suitability.sky.zip
figure5_DIA_samples.sky.zip
figure6_DIA_samples_2024-02-06_13-03-26.sky.zip
figure6_PRM_system_suitability_2024-02-05_19-48-55.sky.zip
figure7_DIA_samples.sky.zip

Log File


09 Apr 2024 15:11:07,777 INFO : Copying experiment "A framework for quality control in quantitative proteomics" from folder /MacCoss/2024_QC_JPR/Data to /Panorama Public/2024/MacCoss - Sample QC and System Suitability
09 Apr 2024 15:11:07,777 INFO : =======================================
09 Apr 2024 15:11:07,824 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
09 Apr 2024 15:11:07,824 INFO :
09 Apr 2024 15:11:07,824 INFO : Exporting experiment.
09 Apr 2024 15:11:48,361 INFO : Exporting files metadata.
09 Apr 2024 15:11:48,932 INFO :
09 Apr 2024 15:11:48,932 INFO : Experiment export completed successfully.
09 Apr 2024 15:11:48,932 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
09 Apr 2024 15:11:48,965 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
09 Apr 2024 15:11:48,965 INFO :
09 Apr 2024 15:11:48,965 INFO : Importing experiment.
09 Apr 2024 15:11:48,970 INFO : Loading folder properties (folder type, settings and active modules)
09 Apr 2024 15:11:49,123 INFO : Done importing folder properties (folder type, settings and active modules)
09 Apr 2024 15:11:49,124 INFO : Loading container specific module properties
09 Apr 2024 15:11:49,129 INFO : Done importing container specific module properties
09 Apr 2024 15:11:49,130 INFO : Loading queries
09 Apr 2024 15:11:49,134 INFO : 1 query imported
09 Apr 2024 15:11:49,134 INFO : Done importing queries
09 Apr 2024 15:11:49,136 INFO : Loading etl definitions
09 Apr 2024 15:11:49,137 INFO : Loading wikis
09 Apr 2024 15:11:49,145 INFO : 1 wiki imported
09 Apr 2024 15:11:49,145 INFO : Done importing wikis
09 Apr 2024 15:11:49,147 INFO : Starting Data Class Importer
09 Apr 2024 15:11:49,147 INFO : No types XAR file to process.
09 Apr 2024 15:11:49,147 INFO : Finished Data Class Importer
09 Apr 2024 15:11:49,148 INFO : Starting to copy files
09 Apr 2024 15:11:49,148 INFO : Copied 0 files
09 Apr 2024 15:11:49,148 INFO : Ensuring exp.data rows exist for imported files
09 Apr 2024 15:11:50,669 INFO : Starting Sample Type Importer
09 Apr 2024 15:11:50,669 INFO : No types XAR file to process.
09 Apr 2024 15:11:50,669 INFO : Finished Sample Type Importer
09 Apr 2024 15:11:50,670 INFO : Loading xar
09 Apr 2024 15:11:50,678 INFO : Done importing xar
09 Apr 2024 15:11:50,679 INFO : Loading pages and webpart properties
09 Apr 2024 15:11:50,745 INFO : Done importing 3 page(s) with 5 webpart(s)
09 Apr 2024 15:11:50,745 INFO : Loading File Browser config
09 Apr 2024 15:11:50,745 INFO : Done importing File Browser config
09 Apr 2024 15:11:50,747 INFO : Starting Sample Status Data import
09 Apr 2024 15:11:50,747 INFO : No sample types XAR file to process.
09 Apr 2024 15:11:50,747 INFO : Finished importing Sample Status Data
09 Apr 2024 15:11:50,753 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
09 Apr 2024 15:11:50,756 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
09 Apr 2024 15:11:50,757 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
09 Apr 2024 15:11:50,757 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
09 Apr 2024 15:11:50,758 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
09 Apr 2024 15:11:50,758 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
09 Apr 2024 15:11:50,760 INFO : Loading subfolders and container tabs
09 Apr 2024 15:11:50,841 INFO : New folder created with inherited permissions: /Panorama Public/2024/MacCoss - Sample QC and System Suitability/figure1
09 Apr 2024 15:11:50,841 INFO : Loading folder archive for figure1
09 Apr 2024 15:11:50,843 INFO : Loading folder properties (folder type, settings and active modules)
09 Apr 2024 15:11:50,921 INFO : Done importing folder properties (folder type, settings and active modules)
09 Apr 2024 15:11:50,922 INFO : Loading container specific module properties
09 Apr 2024 15:11:50,928 INFO : Done importing container specific module properties
09 Apr 2024 15:11:50,929 INFO : Loading queries
09 Apr 2024 15:11:50,933 INFO : 1 query imported
09 Apr 2024 15:11:50,933 INFO : Done importing queries
09 Apr 2024 15:11:50,934 INFO : Loading etl definitions
09 Apr 2024 15:11:50,935 INFO : Loading wikis
09 Apr 2024 15:11:50,950 INFO : 1 wiki imported
09 Apr 2024 15:11:50,950 INFO : Done importing wikis
09 Apr 2024 15:11:50,952 INFO : Starting Data Class Importer
09 Apr 2024 15:11:50,952 INFO : No types XAR file to process.
09 Apr 2024 15:11:50,953 INFO : Finished Data Class Importer
09 Apr 2024 15:11:50,953 INFO : Starting to copy files
09 Apr 2024 15:11:50,954 INFO : Copied 0 files
09 Apr 2024 15:11:50,954 INFO : Ensuring exp.data rows exist for imported files
09 Apr 2024 15:11:50,963 INFO : Starting Sample Type Importer
09 Apr 2024 15:11:50,964 INFO : No types XAR file to process.
09 Apr 2024 15:11:50,964 INFO : Finished Sample Type Importer
09 Apr 2024 15:11:50,965 INFO : Loading xar
09 Apr 2024 15:11:50,969 INFO : Done importing xar
09 Apr 2024 15:11:50,971 INFO : Loading pages and webpart properties
09 Apr 2024 15:11:51,014 INFO : Done importing 2 page(s) with 3 webpart(s)
09 Apr 2024 15:11:51,014 INFO : Loading File Browser config
09 Apr 2024 15:11:51,014 INFO : Done importing File Browser config
09 Apr 2024 15:11:51,015 INFO : Starting Sample Status Data import
09 Apr 2024 15:11:51,015 INFO : No sample types XAR file to process.
09 Apr 2024 15:11:51,015 INFO : Finished importing Sample Status Data
09 Apr 2024 15:11:51,021 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
09 Apr 2024 15:11:51,024 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
09 Apr 2024 15:11:51,024 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
09 Apr 2024 15:11:51,025 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
09 Apr 2024 15:11:51,026 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
09 Apr 2024 15:11:51,026 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
09 Apr 2024 15:11:51,029 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
09 Apr 2024 15:11:51,042 INFO : Moving files to folder /Panorama Public/2024/MacCoss - Sample QC and System Suitability/figure1 and creating symlinks
09 Apr 2024 15:11:51,062 INFO : Aligning data files urls in folder: /Panorama Public/2024/MacCoss - Sample QC and System Suitability/figure1
09 Apr 2024 15:11:51,063 INFO : Done importing folder archive for figure1
09 Apr 2024 15:11:51,135 INFO : New folder created with inherited permissions: /Panorama Public/2024/MacCoss - Sample QC and System Suitability/figure2
09 Apr 2024 15:11:51,135 INFO : Loading folder archive for figure2
09 Apr 2024 15:11:51,137 INFO : Loading folder properties (folder type, settings and active modules)
09 Apr 2024 15:11:51,224 INFO : Done importing folder properties (folder type, settings and active modules)
09 Apr 2024 15:11:51,239 INFO : Loading container specific module properties
09 Apr 2024 15:11:51,308 INFO : Done importing container specific module properties
09 Apr 2024 15:11:51,310 INFO : Loading queries
09 Apr 2024 15:11:51,314 INFO : 1 query imported
09 Apr 2024 15:11:51,314 INFO : Done importing queries
09 Apr 2024 15:11:51,315 INFO : Loading etl definitions
09 Apr 2024 15:11:51,316 INFO : Loading wikis
09 Apr 2024 15:11:51,331 INFO : 1 wiki imported
09 Apr 2024 15:11:51,331 INFO : Done importing wikis
09 Apr 2024 15:11:51,333 INFO : Starting Data Class Importer
09 Apr 2024 15:11:51,334 INFO : No types XAR file to process.
09 Apr 2024 15:11:51,334 INFO : Finished Data Class Importer
09 Apr 2024 15:11:51,334 INFO : Starting to copy files
09 Apr 2024 15:11:51,335 INFO : Copied 0 files
09 Apr 2024 15:11:51,335 INFO : Ensuring exp.data rows exist for imported files
09 Apr 2024 15:11:51,346 INFO : Starting Sample Type Importer
09 Apr 2024 15:11:51,346 INFO : No types XAR file to process.
09 Apr 2024 15:11:51,346 INFO : Finished Sample Type Importer
09 Apr 2024 15:11:51,348 INFO : Loading xar
09 Apr 2024 15:11:51,392 INFO : Done importing xar
09 Apr 2024 15:11:51,394 INFO : Loading pages and webpart properties
09 Apr 2024 15:11:51,440 INFO : Done importing 2 page(s) with 4 webpart(s)
09 Apr 2024 15:11:51,440 INFO : Loading File Browser config
09 Apr 2024 15:11:51,440 INFO : Done importing File Browser config
09 Apr 2024 15:11:51,442 INFO : Starting Sample Status Data import
09 Apr 2024 15:11:51,442 INFO : No sample types XAR file to process.
09 Apr 2024 15:11:51,442 INFO : Finished importing Sample Status Data
09 Apr 2024 15:11:51,449 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
09 Apr 2024 15:11:51,453 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
09 Apr 2024 15:11:51,453 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
09 Apr 2024 15:11:51,454 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
09 Apr 2024 15:11:51,455 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
09 Apr 2024 15:11:51,455 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
09 Apr 2024 15:11:51,456 INFO : Loading subfolders and container tabs
09 Apr 2024 15:11:51,530 INFO : New folder created with inherited permissions: /Panorama Public/2024/MacCoss - Sample QC and System Suitability/figure2/Figure 2 System Suitability
09 Apr 2024 15:11:51,530 INFO : Loading folder archive for Figure 2 System Suitability
09 Apr 2024 15:11:51,532 INFO : Loading folder properties (folder type, settings and active modules)
09 Apr 2024 15:11:51,611 INFO : Done importing folder properties (folder type, settings and active modules)
09 Apr 2024 15:11:51,612 INFO : Loading container specific module properties
09 Apr 2024 15:11:51,617 INFO : Done importing container specific module properties
09 Apr 2024 15:11:51,619 INFO : Loading queries
09 Apr 2024 15:11:51,622 INFO : 1 query imported
09 Apr 2024 15:11:51,622 INFO : Done importing queries
09 Apr 2024 15:11:51,624 INFO : Loading etl definitions
09 Apr 2024 15:11:51,625 INFO : Loading wikis
09 Apr 2024 15:11:51,626 INFO : 0 wikis imported
09 Apr 2024 15:11:51,626 INFO : Done importing wikis
09 Apr 2024 15:11:51,628 INFO : Starting Data Class Importer
09 Apr 2024 15:11:51,628 INFO : No types XAR file to process.
09 Apr 2024 15:11:51,628 INFO : Finished Data Class Importer
09 Apr 2024 15:11:51,629 INFO : Starting to copy files
09 Apr 2024 15:11:51,629 INFO : Copied 0 files
09 Apr 2024 15:11:51,629 INFO : Ensuring exp.data rows exist for imported files
09 Apr 2024 15:11:51,640 INFO : Starting Sample Type Importer
09 Apr 2024 15:11:51,640 INFO : No types XAR file to process.
09 Apr 2024 15:11:51,640 INFO : Finished Sample Type Importer
09 Apr 2024 15:11:51,641 INFO : Loading xar
09 Apr 2024 15:11:54,226 INFO : Starting import from figure2_PRM_system_suitability_2024-02-02_13-59-23.sky.zip
09 Apr 2024 15:11:54,231 INFO : Starting to import Skyline document from figure2_PRM_system_suitability_2024-02-02_13-59-23.sky.zip
09 Apr 2024 15:11:54,232 INFO : Expanding figure2_PRM_system_suitability.skyd
09 Apr 2024 15:11:55,177 INFO : Expanding figure2_PRM_system_suitability.sky.view
09 Apr 2024 15:11:55,249 INFO : Expanding figure2_PRM_system_suitability.sky
09 Apr 2024 15:11:55,390 INFO : Expanding figure2_PRM_system_suitability.skyl
09 Apr 2024 15:11:55,534 INFO : 1% Done
09 Apr 2024 15:11:56,877 INFO : Inserting qc|PRTC|PRTC_Thermo
09 Apr 2024 15:11:56,914 INFO : 4% Done
09 Apr 2024 15:11:57,119 INFO : 8% Done
09 Apr 2024 15:11:57,333 INFO : 11% Done
09 Apr 2024 15:11:57,509 INFO : 13% Done
09 Apr 2024 15:11:57,669 INFO : 16% Done
09 Apr 2024 15:11:57,859 INFO : 20% Done
09 Apr 2024 15:11:58,099 INFO : 23% Done
09 Apr 2024 15:11:58,342 INFO : 28% Done
09 Apr 2024 15:11:58,614 INFO : 31% Done
09 Apr 2024 15:11:58,875 INFO : 37% Done
09 Apr 2024 15:11:59,224 INFO : 40% Done
09 Apr 2024 15:11:59,444 INFO : 43% Done
09 Apr 2024 15:11:59,611 INFO : 46% Done
09 Apr 2024 15:11:59,905 INFO : 50% Done
09 Apr 2024 15:12:00,168 INFO : 55% Done
09 Apr 2024 15:12:00,390 INFO : Inserting sp|P02769|ALBU_BOVIN
09 Apr 2024 15:12:00,429 INFO : 58% Done
09 Apr 2024 15:12:00,617 INFO : 60% Done
09 Apr 2024 15:12:00,751 INFO : Done parsing Skyline document.
09 Apr 2024 15:12:00,815 INFO : No group comparisons found.
09 Apr 2024 15:12:00,815 INFO : Calculating calibration curves
09 Apr 2024 15:12:01,379 INFO : 64% Done
09 Apr 2024 15:12:01,440 INFO : 68% Done
09 Apr 2024 15:12:01,445 INFO : Done calculating calibration curves.
09 Apr 2024 15:12:01,539 INFO : 98% Done
09 Apr 2024 15:12:01,539 INFO : Did not find any older sample file data to delete.
09 Apr 2024 15:12:01,545 INFO : Creating and populating temp tables for Proportion values
09 Apr 2024 15:12:01,554 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
09 Apr 2024 15:12:01,612 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
09 Apr 2024 15:12:01,652 INFO : Cleaning up temp tables
09 Apr 2024 15:12:02,049 INFO : Completed import of Skyline document from figure2_PRM_system_suitability_2024-02-02_13-59-23.sky.zip
09 Apr 2024 15:12:02,061 INFO : 100% Done
09 Apr 2024 15:12:02,096 INFO : Done importing xar
09 Apr 2024 15:12:02,103 INFO : Loading pages and webpart properties
09 Apr 2024 15:12:02,289 INFO : Done importing 7 page(s) with 10 webpart(s)
09 Apr 2024 15:12:02,289 INFO : Loading File Browser config
09 Apr 2024 15:12:02,289 INFO : Done importing File Browser config
09 Apr 2024 15:12:02,291 INFO : Starting Sample Status Data import
09 Apr 2024 15:12:02,291 INFO : No sample types XAR file to process.
09 Apr 2024 15:12:02,291 INFO : Finished importing Sample Status Data
09 Apr 2024 15:12:02,298 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
09 Apr 2024 15:12:02,303 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
09 Apr 2024 15:12:02,304 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
09 Apr 2024 15:12:02,305 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
09 Apr 2024 15:12:02,306 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
09 Apr 2024 15:12:02,311 INFO : Finished importing 3 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
09 Apr 2024 15:12:02,312 INFO : Starting data import from QCAnnotation.tsv into targetedms.QCAnnotation
09 Apr 2024 15:12:02,354 INFO : Finished importing 5 rows from QCAnnotation.tsv into targetedms.QCAnnotation
09 Apr 2024 15:12:02,355 INFO : Starting QC Plot settings import
09 Apr 2024 15:12:02,361 INFO : Finished importing 9 QC Plot settings from PlotSettings.properties as properties.
09 Apr 2024 15:12:02,363 INFO : Moving files to folder /Panorama Public/2024/MacCoss - Sample QC and System Suitability/figure2/Figure 2 System Suitability and creating symlinks
09 Apr 2024 15:12:02,734 INFO : Aligning data files urls in folder: /Panorama Public/2024/MacCoss - Sample QC and System Suitability/figure2/Figure 2 System Suitability
09 Apr 2024 15:12:02,743 INFO : Done importing folder archive for Figure 2 System Suitability
09 Apr 2024 15:12:02,743 INFO : Done importing subfolders and container tabs
09 Apr 2024 15:12:02,744 INFO : Moving files to folder /Panorama Public/2024/MacCoss - Sample QC and System Suitability/figure2 and creating symlinks
09 Apr 2024 15:12:02,801 INFO : Aligning data files urls in folder: /Panorama Public/2024/MacCoss - Sample QC and System Suitability/figure2
09 Apr 2024 15:12:02,802 INFO : Done importing folder archive for figure2
09 Apr 2024 15:12:02,889 INFO : New folder created with inherited permissions: /Panorama Public/2024/MacCoss - Sample QC and System Suitability/figure3
09 Apr 2024 15:12:02,889 INFO : Loading folder archive for figure3
09 Apr 2024 15:12:02,891 INFO : Loading folder properties (folder type, settings and active modules)
09 Apr 2024 15:12:02,975 INFO : Done importing folder properties (folder type, settings and active modules)
09 Apr 2024 15:12:02,976 INFO : Loading container specific module properties
09 Apr 2024 15:12:02,983 INFO : Done importing container specific module properties
09 Apr 2024 15:12:02,985 INFO : Loading queries
09 Apr 2024 15:12:02,990 INFO : 1 query imported
09 Apr 2024 15:12:02,990 INFO : Done importing queries
09 Apr 2024 15:12:02,991 INFO : Loading etl definitions
09 Apr 2024 15:12:02,993 INFO : Loading wikis
09 Apr 2024 15:12:03,007 INFO : 1 wiki imported
09 Apr 2024 15:12:03,007 INFO : Done importing wikis
09 Apr 2024 15:12:03,009 INFO : Starting Data Class Importer
09 Apr 2024 15:12:03,009 INFO : No types XAR file to process.
09 Apr 2024 15:12:03,009 INFO : Finished Data Class Importer
09 Apr 2024 15:12:03,010 INFO : Starting to copy files
09 Apr 2024 15:12:03,010 INFO : Copied 0 files
09 Apr 2024 15:12:03,010 INFO : Ensuring exp.data rows exist for imported files
09 Apr 2024 15:12:03,021 INFO : Starting Sample Type Importer
09 Apr 2024 15:12:03,021 INFO : No types XAR file to process.
09 Apr 2024 15:12:03,021 INFO : Finished Sample Type Importer
09 Apr 2024 15:12:03,022 INFO : Loading xar
09 Apr 2024 15:12:04,199 INFO : Starting import from figure3_PRM_system_suitability.sky.zip
09 Apr 2024 15:12:04,204 INFO : Starting to import Skyline document from figure3_PRM_system_suitability.sky.zip
09 Apr 2024 15:12:04,267 INFO : Expanding figure3_PRM_system_suitability.skyd
09 Apr 2024 15:12:04,718 INFO : Expanding figure3_PRM_system_suitability.sky.view
09 Apr 2024 15:12:04,837 INFO : Expanding figure3_PRM_system_suitability.sky
09 Apr 2024 15:12:04,851 INFO : Expanding figure3_PRM_system_suitability.skyl
09 Apr 2024 15:12:04,888 INFO : 2% Done
09 Apr 2024 15:12:05,880 INFO : Inserting qc|PRTC|PRTC_Thermo
09 Apr 2024 15:12:05,904 INFO : 6% Done
09 Apr 2024 15:12:06,005 INFO : 12% Done
09 Apr 2024 15:12:06,108 INFO : 15% Done
09 Apr 2024 15:12:06,179 INFO : 19% Done
09 Apr 2024 15:12:06,291 INFO : 23% Done
09 Apr 2024 15:12:06,373 INFO : 27% Done
09 Apr 2024 15:12:06,467 INFO : 33% Done
09 Apr 2024 15:12:06,580 INFO : 39% Done
09 Apr 2024 15:12:06,692 INFO : 44% Done
09 Apr 2024 15:12:06,795 INFO : 50% Done
09 Apr 2024 15:12:06,914 INFO : 56% Done
09 Apr 2024 15:12:07,019 INFO : 59% Done
09 Apr 2024 15:12:07,095 INFO : 63% Done
09 Apr 2024 15:12:07,177 INFO : 68% Done
09 Apr 2024 15:12:07,281 INFO : 73% Done
09 Apr 2024 15:12:07,442 INFO : Inserting sp|P02769|ALBU_BOVIN
09 Apr 2024 15:12:07,463 INFO : 77% Done
09 Apr 2024 15:12:07,552 INFO : 80% Done
09 Apr 2024 15:12:07,608 INFO : Done parsing Skyline document.
09 Apr 2024 15:12:07,666 INFO : No group comparisons found.
09 Apr 2024 15:12:07,666 INFO : Calculating calibration curves
09 Apr 2024 15:12:08,009 INFO : 89% Done
09 Apr 2024 15:12:08,048 INFO : 98% Done
09 Apr 2024 15:12:08,053 INFO : Done calculating calibration curves.
09 Apr 2024 15:12:08,187 INFO : Creating and populating temp tables for Proportion values
09 Apr 2024 15:12:08,195 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
09 Apr 2024 15:12:08,222 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
09 Apr 2024 15:12:08,240 INFO : Cleaning up temp tables
09 Apr 2024 15:12:08,248 INFO : Completed import of Skyline document from figure3_PRM_system_suitability.sky.zip
09 Apr 2024 15:12:08,251 INFO : 100% Done
09 Apr 2024 15:12:08,270 INFO : Done importing xar
09 Apr 2024 15:12:08,272 INFO : Loading pages and webpart properties
09 Apr 2024 15:12:08,443 INFO : Done importing 4 page(s) with 6 webpart(s)
09 Apr 2024 15:12:08,443 INFO : Loading File Browser config
09 Apr 2024 15:12:08,443 INFO : Done importing File Browser config
09 Apr 2024 15:12:08,445 INFO : Starting Sample Status Data import
09 Apr 2024 15:12:08,445 INFO : No sample types XAR file to process.
09 Apr 2024 15:12:08,445 INFO : Finished importing Sample Status Data
09 Apr 2024 15:12:08,451 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
09 Apr 2024 15:12:08,458 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
09 Apr 2024 15:12:08,459 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
09 Apr 2024 15:12:08,459 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
09 Apr 2024 15:12:08,460 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
09 Apr 2024 15:12:08,460 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
09 Apr 2024 15:12:08,461 INFO : Moving files to folder /Panorama Public/2024/MacCoss - Sample QC and System Suitability/figure3 and creating symlinks
09 Apr 2024 15:12:08,715 INFO : Aligning data files urls in folder: /Panorama Public/2024/MacCoss - Sample QC and System Suitability/figure3
09 Apr 2024 15:12:08,724 INFO : Done importing folder archive for figure3
09 Apr 2024 15:12:08,817 INFO : New folder created with inherited permissions: /Panorama Public/2024/MacCoss - Sample QC and System Suitability/figure4
09 Apr 2024 15:12:08,817 INFO : Loading folder archive for figure4
09 Apr 2024 15:12:08,819 INFO : Loading folder properties (folder type, settings and active modules)
09 Apr 2024 15:12:08,906 INFO : Done importing folder properties (folder type, settings and active modules)
09 Apr 2024 15:12:08,908 INFO : Loading container specific module properties
09 Apr 2024 15:12:08,913 INFO : Done importing container specific module properties
09 Apr 2024 15:12:08,915 INFO : Loading queries
09 Apr 2024 15:12:08,919 INFO : 1 query imported
09 Apr 2024 15:12:08,919 INFO : Done importing queries
09 Apr 2024 15:12:08,921 INFO : Loading etl definitions
09 Apr 2024 15:12:08,922 INFO : Loading wikis
09 Apr 2024 15:12:08,934 INFO : 1 wiki imported
09 Apr 2024 15:12:08,934 INFO : Done importing wikis
09 Apr 2024 15:12:08,936 INFO : Starting Data Class Importer
09 Apr 2024 15:12:08,936 INFO : No types XAR file to process.
09 Apr 2024 15:12:08,936 INFO : Finished Data Class Importer
09 Apr 2024 15:12:08,937 INFO : Starting to copy files
09 Apr 2024 15:12:08,937 INFO : Copied 0 files
09 Apr 2024 15:12:08,937 INFO : Ensuring exp.data rows exist for imported files
09 Apr 2024 15:12:08,948 INFO : Starting Sample Type Importer
09 Apr 2024 15:12:08,948 INFO : No types XAR file to process.
09 Apr 2024 15:12:08,948 INFO : Finished Sample Type Importer
09 Apr 2024 15:12:08,949 INFO : Loading xar
09 Apr 2024 15:12:09,788 INFO : Starting import from figure4_DIA_samples.sky.zip
09 Apr 2024 15:12:09,792 INFO : Starting to import Skyline document from figure4_DIA_samples.sky.zip
09 Apr 2024 15:12:09,793 INFO : Expanding figure4_DIA_samples.skyd
09 Apr 2024 15:12:10,018 INFO : Expanding figure4_DIA_samples.sky.view
09 Apr 2024 15:12:10,019 INFO : Expanding figure4_DIA_samples.sky
09 Apr 2024 15:12:10,034 INFO : Expanding figure4_DIA_samples.skyl
09 Apr 2024 15:12:10,046 INFO : 1% Done
09 Apr 2024 15:12:11,192 INFO : Inserting qc|PRTC|PRTC_Thermo
09 Apr 2024 15:12:11,213 INFO : 4% Done
09 Apr 2024 15:12:11,302 INFO : 8% Done
09 Apr 2024 15:12:11,432 INFO : 11% Done
09 Apr 2024 15:12:11,505 INFO : 14% Done
09 Apr 2024 15:12:11,573 INFO : 16% Done
09 Apr 2024 15:12:11,651 INFO : 21% Done
09 Apr 2024 15:12:11,752 INFO : 24% Done
09 Apr 2024 15:12:11,854 INFO : 29% Done
09 Apr 2024 15:12:11,957 INFO : 32% Done
09 Apr 2024 15:12:12,060 INFO : 38% Done
09 Apr 2024 15:12:12,184 INFO : 42% Done
09 Apr 2024 15:12:12,277 INFO : 44% Done
09 Apr 2024 15:12:12,344 INFO : 47% Done
09 Apr 2024 15:12:12,430 INFO : 51% Done
09 Apr 2024 15:12:12,554 INFO : 56% Done
09 Apr 2024 15:12:12,640 INFO : Inserting sp|P00924|ENO1_YEAST
09 Apr 2024 15:12:12,661 INFO : 59% Done
09 Apr 2024 15:12:12,764 INFO : 64% Done
09 Apr 2024 15:12:12,882 INFO : 69% Done
09 Apr 2024 15:12:13,004 INFO : 74% Done
09 Apr 2024 15:12:13,123 INFO : 76% Done
09 Apr 2024 15:12:13,216 INFO : 80% Done
09 Apr 2024 15:12:13,382 INFO : Done parsing Skyline document.
09 Apr 2024 15:12:13,443 INFO : No group comparisons found.
09 Apr 2024 15:12:13,443 INFO : Calculating calibration curves
09 Apr 2024 15:12:13,760 INFO : 89% Done
09 Apr 2024 15:12:13,907 INFO : 98% Done
09 Apr 2024 15:12:13,912 INFO : Done calculating calibration curves.
09 Apr 2024 15:12:13,953 INFO : Creating and populating temp tables for Proportion values
09 Apr 2024 15:12:13,960 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
09 Apr 2024 15:12:13,988 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
09 Apr 2024 15:12:14,009 INFO : Cleaning up temp tables
09 Apr 2024 15:12:14,375 INFO : Completed import of Skyline document from figure4_DIA_samples.sky.zip
09 Apr 2024 15:12:14,393 INFO : 100% Done
09 Apr 2024 15:12:14,440 INFO : Starting import from figure4_PRM_system_suitability.sky.zip
09 Apr 2024 15:12:14,442 INFO : Starting to import Skyline document from figure4_PRM_system_suitability.sky.zip
09 Apr 2024 15:12:14,443 INFO : Expanding figure4_PRM_system_suitability.skyd
09 Apr 2024 15:12:14,539 INFO : Expanding figure4_PRM_system_suitability.sky.view
09 Apr 2024 15:12:14,541 INFO : Expanding figure4_PRM_system_suitability.sky
09 Apr 2024 15:12:14,546 INFO : Expanding figure4_PRM_system_suitability.skyl
09 Apr 2024 15:12:14,558 INFO : 2% Done
09 Apr 2024 15:12:16,637 INFO : Inserting qc|PRTC|PRTC_Thermo
09 Apr 2024 15:12:16,651 INFO : 6% Done
09 Apr 2024 15:12:16,694 INFO : 11% Done
09 Apr 2024 15:12:16,738 INFO : 14% Done
09 Apr 2024 15:12:16,775 INFO : 18% Done
09 Apr 2024 15:12:16,808 INFO : 22% Done
09 Apr 2024 15:12:16,846 INFO : 27% Done
09 Apr 2024 15:12:16,894 INFO : 32% Done
09 Apr 2024 15:12:16,942 INFO : 38% Done
09 Apr 2024 15:12:16,992 INFO : 42% Done
09 Apr 2024 15:12:17,043 INFO : 49% Done
09 Apr 2024 15:12:17,135 INFO : 54% Done
09 Apr 2024 15:12:17,182 INFO : 58% Done
09 Apr 2024 15:12:17,261 INFO : 62% Done
09 Apr 2024 15:12:17,304 INFO : 67% Done
09 Apr 2024 15:12:17,355 INFO : 73% Done
09 Apr 2024 15:12:17,397 INFO : Inserting sp|P02769|ALBU_BOVIN
09 Apr 2024 15:12:17,408 INFO : 77% Done
09 Apr 2024 15:12:17,445 INFO : 80% Done
09 Apr 2024 15:12:17,472 INFO : Done parsing Skyline document.
09 Apr 2024 15:12:17,533 INFO : No group comparisons found.
09 Apr 2024 15:12:17,533 INFO : Calculating calibration curves
09 Apr 2024 15:12:17,756 INFO : 89% Done
09 Apr 2024 15:12:17,785 INFO : 98% Done
09 Apr 2024 15:12:17,792 INFO : Done calculating calibration curves.
09 Apr 2024 15:12:17,814 INFO : Creating and populating temp tables for Proportion values
09 Apr 2024 15:12:17,821 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
09 Apr 2024 15:12:17,831 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
09 Apr 2024 15:12:17,838 INFO : Cleaning up temp tables
09 Apr 2024 15:12:17,842 INFO : Completed import of Skyline document from figure4_PRM_system_suitability.sky.zip
09 Apr 2024 15:12:17,844 INFO : 100% Done
09 Apr 2024 15:12:17,863 INFO : Done importing xar
09 Apr 2024 15:12:17,864 INFO : Loading pages and webpart properties
09 Apr 2024 15:12:17,952 INFO : Done importing 4 page(s) with 6 webpart(s)
09 Apr 2024 15:12:17,952 INFO : Loading File Browser config
09 Apr 2024 15:12:17,952 INFO : Done importing File Browser config
09 Apr 2024 15:12:17,954 INFO : Starting Sample Status Data import
09 Apr 2024 15:12:17,954 INFO : No sample types XAR file to process.
09 Apr 2024 15:12:17,954 INFO : Finished importing Sample Status Data
09 Apr 2024 15:12:17,960 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
09 Apr 2024 15:12:17,963 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
09 Apr 2024 15:12:17,964 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
09 Apr 2024 15:12:17,964 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
09 Apr 2024 15:12:17,965 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
09 Apr 2024 15:12:17,965 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
09 Apr 2024 15:12:17,966 INFO : Moving files to folder /Panorama Public/2024/MacCoss - Sample QC and System Suitability/figure4 and creating symlinks
09 Apr 2024 15:12:18,240 INFO : Aligning data files urls in folder: /Panorama Public/2024/MacCoss - Sample QC and System Suitability/figure4
09 Apr 2024 15:12:18,327 INFO : Done importing folder archive for figure4
09 Apr 2024 15:12:18,421 INFO : New folder created with inherited permissions: /Panorama Public/2024/MacCoss - Sample QC and System Suitability/figure5
09 Apr 2024 15:12:18,421 INFO : Loading folder archive for figure5
09 Apr 2024 15:12:18,423 INFO : Loading folder properties (folder type, settings and active modules)
09 Apr 2024 15:12:18,508 INFO : Done importing folder properties (folder type, settings and active modules)
09 Apr 2024 15:12:18,510 INFO : Loading container specific module properties
09 Apr 2024 15:12:18,516 INFO : Done importing container specific module properties
09 Apr 2024 15:12:18,517 INFO : Loading queries
09 Apr 2024 15:12:18,522 INFO : 1 query imported
09 Apr 2024 15:12:18,522 INFO : Done importing queries
09 Apr 2024 15:12:18,523 INFO : Loading etl definitions
09 Apr 2024 15:12:18,525 INFO : Loading wikis
09 Apr 2024 15:12:18,539 INFO : 1 wiki imported
09 Apr 2024 15:12:18,539 INFO : Done importing wikis
09 Apr 2024 15:12:18,541 INFO : Starting Data Class Importer
09 Apr 2024 15:12:18,541 INFO : No types XAR file to process.
09 Apr 2024 15:12:18,541 INFO : Finished Data Class Importer
09 Apr 2024 15:12:18,542 INFO : Starting to copy files
09 Apr 2024 15:12:18,542 INFO : Copied 0 files
09 Apr 2024 15:12:18,542 INFO : Ensuring exp.data rows exist for imported files
09 Apr 2024 15:12:18,558 INFO : Starting Sample Type Importer
09 Apr 2024 15:12:18,559 INFO : No types XAR file to process.
09 Apr 2024 15:12:18,559 INFO : Finished Sample Type Importer
09 Apr 2024 15:12:18,560 INFO : Loading xar
09 Apr 2024 15:12:19,058 INFO : Starting import from figure5_PRM_system_suitability.sky.zip
09 Apr 2024 15:12:19,062 INFO : Starting to import Skyline document from figure5_PRM_system_suitability.sky.zip
09 Apr 2024 15:12:19,063 INFO : Expanding figure5_PRM_system_suitability.skyd
09 Apr 2024 15:12:19,133 INFO : Expanding figure5_PRM_system_suitability.sky.view
09 Apr 2024 15:12:19,135 INFO : Expanding figure5_PRM_system_suitability.sky
09 Apr 2024 15:12:19,139 INFO : Expanding figure5_PRM_system_suitability.skyl
09 Apr 2024 15:12:19,146 INFO : 2% Done
09 Apr 2024 15:12:19,929 INFO : Inserting qc|PRTC|PRTC_Thermo
09 Apr 2024 15:12:19,954 INFO : 6% Done
09 Apr 2024 15:12:19,999 INFO : 11% Done
09 Apr 2024 15:12:20,025 INFO : 15% Done
09 Apr 2024 15:12:20,073 INFO : 18% Done
09 Apr 2024 15:12:20,099 INFO : 22% Done
09 Apr 2024 15:12:20,129 INFO : 27% Done
09 Apr 2024 15:12:20,166 INFO : 32% Done
09 Apr 2024 15:12:20,203 INFO : 38% Done
09 Apr 2024 15:12:20,245 INFO : 42% Done
09 Apr 2024 15:12:20,274 INFO : 50% Done
09 Apr 2024 15:12:20,309 INFO : 54% Done
09 Apr 2024 15:12:20,335 INFO : 58% Done
09 Apr 2024 15:12:20,356 INFO : 62% Done
09 Apr 2024 15:12:20,380 INFO : 67% Done
09 Apr 2024 15:12:20,409 INFO : 73% Done
09 Apr 2024 15:12:20,434 INFO : Inserting sp|P02769|ALBU_BOVIN
09 Apr 2024 15:12:20,442 INFO : 78% Done
09 Apr 2024 15:12:20,465 INFO : 80% Done
09 Apr 2024 15:12:20,481 INFO : Done parsing Skyline document.
09 Apr 2024 15:12:20,543 INFO : No group comparisons found.
09 Apr 2024 15:12:20,543 INFO : Calculating calibration curves
09 Apr 2024 15:12:20,739 INFO : 89% Done
09 Apr 2024 15:12:20,762 INFO : 98% Done
09 Apr 2024 15:12:20,767 INFO : Done calculating calibration curves.
09 Apr 2024 15:12:20,790 INFO : Creating and populating temp tables for Proportion values
09 Apr 2024 15:12:20,797 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
09 Apr 2024 15:12:20,805 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
09 Apr 2024 15:12:20,811 INFO : Cleaning up temp tables
09 Apr 2024 15:12:20,817 INFO : Completed import of Skyline document from figure5_PRM_system_suitability.sky.zip
09 Apr 2024 15:12:20,819 INFO : 100% Done
09 Apr 2024 15:12:20,833 INFO : Starting import from figure5_DIA_samples.sky.zip
09 Apr 2024 15:12:20,835 INFO : Starting to import Skyline document from figure5_DIA_samples.sky.zip
09 Apr 2024 15:12:20,836 INFO : Expanding figure5_DIA_samples.skyd
09 Apr 2024 15:12:20,949 INFO : Expanding figure5_DIA_samples.sky.view
09 Apr 2024 15:12:20,950 INFO : Expanding figure5_DIA_samples.sky
09 Apr 2024 15:12:20,958 INFO : Expanding figure5_DIA_samples.skyl
09 Apr 2024 15:12:20,969 INFO : 2% Done
09 Apr 2024 15:12:23,208 INFO : Inserting qc|PRTC|PRTC_Thermo
09 Apr 2024 15:12:23,223 INFO : 5% Done
09 Apr 2024 15:12:23,270 INFO : 8% Done
09 Apr 2024 15:12:23,317 INFO : 11% Done
09 Apr 2024 15:12:23,354 INFO : 14% Done
09 Apr 2024 15:12:23,389 INFO : 16% Done
09 Apr 2024 15:12:23,427 INFO : 21% Done
09 Apr 2024 15:12:23,480 INFO : 24% Done
09 Apr 2024 15:12:23,530 INFO : 29% Done
09 Apr 2024 15:12:23,581 INFO : 32% Done
09 Apr 2024 15:12:23,633 INFO : 38% Done
09 Apr 2024 15:12:23,695 INFO : 42% Done
09 Apr 2024 15:12:23,741 INFO : 44% Done
09 Apr 2024 15:12:23,777 INFO : 47% Done
09 Apr 2024 15:12:23,822 INFO : 51% Done
09 Apr 2024 15:12:23,875 INFO : 55% Done
09 Apr 2024 15:12:23,921 INFO : 56% Done
09 Apr 2024 15:12:23,921 INFO : Inserting sp|P00924|ENO1_YEAST
09 Apr 2024 15:12:23,934 INFO : 59% Done
09 Apr 2024 15:12:23,990 INFO : 64% Done
09 Apr 2024 15:12:24,068 INFO : 69% Done
09 Apr 2024 15:12:24,192 INFO : 74% Done
09 Apr 2024 15:12:24,258 INFO : 76% Done
09 Apr 2024 15:12:24,298 INFO : 80% Done
09 Apr 2024 15:12:24,341 INFO : Done parsing Skyline document.
09 Apr 2024 15:12:24,404 INFO : No group comparisons found.
09 Apr 2024 15:12:24,404 INFO : Calculating calibration curves
09 Apr 2024 15:12:24,654 INFO : 89% Done
09 Apr 2024 15:12:24,761 INFO : 98% Done
09 Apr 2024 15:12:24,767 INFO : Done calculating calibration curves.
09 Apr 2024 15:12:24,796 INFO : Creating and populating temp tables for Proportion values
09 Apr 2024 15:12:24,803 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
09 Apr 2024 15:12:24,816 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
09 Apr 2024 15:12:24,825 INFO : Cleaning up temp tables
09 Apr 2024 15:12:24,831 INFO : Completed import of Skyline document from figure5_DIA_samples.sky.zip
09 Apr 2024 15:12:24,833 INFO : 100% Done
09 Apr 2024 15:12:24,852 INFO : Done importing xar
09 Apr 2024 15:12:24,854 INFO : Loading pages and webpart properties
09 Apr 2024 15:12:24,944 INFO : Done importing 4 page(s) with 6 webpart(s)
09 Apr 2024 15:12:24,944 INFO : Loading File Browser config
09 Apr 2024 15:12:24,944 INFO : Done importing File Browser config
09 Apr 2024 15:12:24,946 INFO : Starting Sample Status Data import
09 Apr 2024 15:12:24,946 INFO : No sample types XAR file to process.
09 Apr 2024 15:12:24,946 INFO : Finished importing Sample Status Data
09 Apr 2024 15:12:24,952 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
09 Apr 2024 15:12:24,956 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
09 Apr 2024 15:12:24,956 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
09 Apr 2024 15:12:24,957 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
09 Apr 2024 15:12:24,958 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
09 Apr 2024 15:12:24,958 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
09 Apr 2024 15:12:24,959 INFO : Moving files to folder /Panorama Public/2024/MacCoss - Sample QC and System Suitability/figure5 and creating symlinks
09 Apr 2024 15:12:25,261 INFO : Aligning data files urls in folder: /Panorama Public/2024/MacCoss - Sample QC and System Suitability/figure5
09 Apr 2024 15:12:25,275 INFO : Done importing folder archive for figure5
09 Apr 2024 15:12:25,362 INFO : New folder created with inherited permissions: /Panorama Public/2024/MacCoss - Sample QC and System Suitability/figure6
09 Apr 2024 15:12:25,362 INFO : Loading folder archive for figure6
09 Apr 2024 15:12:25,363 INFO : Loading folder properties (folder type, settings and active modules)
09 Apr 2024 15:12:25,442 INFO : Done importing folder properties (folder type, settings and active modules)
09 Apr 2024 15:12:25,444 INFO : Loading container specific module properties
09 Apr 2024 15:12:25,449 INFO : Done importing container specific module properties
09 Apr 2024 15:12:25,451 INFO : Loading queries
09 Apr 2024 15:12:25,455 INFO : 1 query imported
09 Apr 2024 15:12:25,455 INFO : Done importing queries
09 Apr 2024 15:12:25,457 INFO : Loading etl definitions
09 Apr 2024 15:12:25,458 INFO : Loading wikis
09 Apr 2024 15:12:25,471 INFO : 1 wiki imported
09 Apr 2024 15:12:25,471 INFO : Done importing wikis
09 Apr 2024 15:12:25,473 INFO : Starting Data Class Importer
09 Apr 2024 15:12:25,474 INFO : No types XAR file to process.
09 Apr 2024 15:12:25,474 INFO : Finished Data Class Importer
09 Apr 2024 15:12:25,475 INFO : Starting to copy files
09 Apr 2024 15:12:25,475 INFO : Copied 0 files
09 Apr 2024 15:12:25,475 INFO : Ensuring exp.data rows exist for imported files
09 Apr 2024 15:12:25,485 INFO : Starting Sample Type Importer
09 Apr 2024 15:12:25,485 INFO : No types XAR file to process.
09 Apr 2024 15:12:25,485 INFO : Finished Sample Type Importer
09 Apr 2024 15:12:25,487 INFO : Loading xar
09 Apr 2024 15:12:25,511 INFO : Done importing xar
09 Apr 2024 15:12:25,513 INFO : Loading pages and webpart properties
09 Apr 2024 15:12:25,556 INFO : Done importing 2 page(s) with 4 webpart(s)
09 Apr 2024 15:12:25,556 INFO : Loading File Browser config
09 Apr 2024 15:12:25,556 INFO : Done importing File Browser config
09 Apr 2024 15:12:25,557 INFO : Starting Sample Status Data import
09 Apr 2024 15:12:25,557 INFO : No sample types XAR file to process.
09 Apr 2024 15:12:25,558 INFO : Finished importing Sample Status Data
09 Apr 2024 15:12:25,564 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
09 Apr 2024 15:12:25,567 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
09 Apr 2024 15:12:25,568 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
09 Apr 2024 15:12:25,569 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
09 Apr 2024 15:12:25,569 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
09 Apr 2024 15:12:25,569 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
09 Apr 2024 15:12:25,571 INFO : Loading subfolders and container tabs
09 Apr 2024 15:12:25,643 INFO : New folder created with inherited permissions: /Panorama Public/2024/MacCoss - Sample QC and System Suitability/figure6/Figure 6 Sample Internal Quality Controls
09 Apr 2024 15:12:25,643 INFO : Loading folder archive for Figure 6 Sample Internal Quality Controls
09 Apr 2024 15:12:25,645 INFO : Loading folder properties (folder type, settings and active modules)
09 Apr 2024 15:12:25,721 INFO : Done importing folder properties (folder type, settings and active modules)
09 Apr 2024 15:12:25,722 INFO : Loading container specific module properties
09 Apr 2024 15:12:25,728 INFO : Done importing container specific module properties
09 Apr 2024 15:12:25,729 INFO : Loading queries
09 Apr 2024 15:12:25,733 INFO : 1 query imported
09 Apr 2024 15:12:25,733 INFO : Done importing queries
09 Apr 2024 15:12:25,734 INFO : Loading etl definitions
09 Apr 2024 15:12:25,736 INFO : Loading wikis
09 Apr 2024 15:12:25,741 INFO : 1 wiki imported
09 Apr 2024 15:12:25,741 INFO : Done importing wikis
09 Apr 2024 15:12:25,743 INFO : Starting Data Class Importer
09 Apr 2024 15:12:25,743 INFO : No types XAR file to process.
09 Apr 2024 15:12:25,744 INFO : Finished Data Class Importer
09 Apr 2024 15:12:25,744 INFO : Starting to copy files
09 Apr 2024 15:12:25,744 INFO : Copied 0 files
09 Apr 2024 15:12:25,745 INFO : Ensuring exp.data rows exist for imported files
09 Apr 2024 15:12:25,755 INFO : Starting Sample Type Importer
09 Apr 2024 15:12:25,755 INFO : No types XAR file to process.
09 Apr 2024 15:12:25,755 INFO : Finished Sample Type Importer
09 Apr 2024 15:12:25,756 INFO : Loading xar
09 Apr 2024 15:12:27,903 INFO : Starting import from figure6_DIA_samples_2024-02-06_13-03-26.sky.zip
09 Apr 2024 15:12:27,908 INFO : Starting to import Skyline document from figure6_DIA_samples_2024-02-06_13-03-26.sky.zip
09 Apr 2024 15:12:27,924 INFO : Expanding figure6_DIA_samples.skyd
09 Apr 2024 15:12:28,887 INFO : Expanding figure6_DIA_samples.sky.view
09 Apr 2024 15:12:29,013 INFO : Expanding figure6_DIA_samples.sky
09 Apr 2024 15:12:29,100 INFO : Expanding figure6_DIA_samples.skyl
09 Apr 2024 15:12:29,155 INFO : 1% Done
09 Apr 2024 15:12:31,203 INFO : Inserting qc|PRTC|PRTC_Thermo
09 Apr 2024 15:12:31,258 INFO : 3% Done
09 Apr 2024 15:12:31,600 INFO : 6% Done
09 Apr 2024 15:12:31,941 INFO : 8% Done
09 Apr 2024 15:12:32,259 INFO : 10% Done
09 Apr 2024 15:12:32,533 INFO : 12% Done
09 Apr 2024 15:12:32,826 INFO : 15% Done
09 Apr 2024 15:12:33,220 INFO : 18% Done
09 Apr 2024 15:12:33,641 INFO : 22% Done
09 Apr 2024 15:12:34,040 INFO : 24% Done
09 Apr 2024 15:12:34,480 INFO : 28% Done
09 Apr 2024 15:12:34,985 INFO : 31% Done
09 Apr 2024 15:12:35,347 INFO : 33% Done
09 Apr 2024 15:12:35,706 INFO : 35% Done
09 Apr 2024 15:12:36,040 INFO : 38% Done
09 Apr 2024 15:12:36,441 INFO : 42% Done
09 Apr 2024 15:12:36,803 INFO : Inserting sp|P00924|ENO1_YEAST
09 Apr 2024 15:12:36,873 INFO : 44% Done
09 Apr 2024 15:12:37,268 INFO : 48% Done
09 Apr 2024 15:12:37,742 INFO : 52% Done
09 Apr 2024 15:12:38,210 INFO : 55% Done
09 Apr 2024 15:12:38,627 INFO : 57% Done
09 Apr 2024 15:12:38,924 INFO : 60% Done
09 Apr 2024 15:12:39,212 INFO : Done parsing Skyline document.
09 Apr 2024 15:12:39,278 INFO : No group comparisons found.
09 Apr 2024 15:12:39,278 INFO : Calculating calibration curves
09 Apr 2024 15:12:39,949 INFO : 64% Done
09 Apr 2024 15:12:40,290 INFO : 68% Done
09 Apr 2024 15:12:40,296 INFO : Done calculating calibration curves.
09 Apr 2024 15:12:40,339 INFO : 98% Done
09 Apr 2024 15:12:40,339 INFO : Did not find any older sample file data to delete.
09 Apr 2024 15:12:40,346 INFO : Creating and populating temp tables for Proportion values
09 Apr 2024 15:12:40,358 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
09 Apr 2024 15:12:40,470 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
09 Apr 2024 15:12:40,545 INFO : Cleaning up temp tables
09 Apr 2024 15:12:40,904 INFO : Completed import of Skyline document from figure6_DIA_samples_2024-02-06_13-03-26.sky.zip
09 Apr 2024 15:12:40,907 INFO : 100% Done
09 Apr 2024 15:12:40,925 INFO : Done importing xar
09 Apr 2024 15:12:40,927 INFO : Loading pages and webpart properties
09 Apr 2024 15:12:41,085 INFO : Done importing 7 page(s) with 10 webpart(s)
09 Apr 2024 15:12:41,085 INFO : Loading File Browser config
09 Apr 2024 15:12:41,085 INFO : Done importing File Browser config
09 Apr 2024 15:12:41,087 INFO : Starting Sample Status Data import
09 Apr 2024 15:12:41,087 INFO : No sample types XAR file to process.
09 Apr 2024 15:12:41,087 INFO : Finished importing Sample Status Data
09 Apr 2024 15:12:41,095 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
09 Apr 2024 15:12:41,100 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
09 Apr 2024 15:12:41,101 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
09 Apr 2024 15:12:41,101 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
09 Apr 2024 15:12:41,102 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
09 Apr 2024 15:12:41,102 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
09 Apr 2024 15:12:41,102 INFO : Starting QC Plot settings import
09 Apr 2024 15:12:41,108 INFO : Finished importing 8 QC Plot settings from PlotSettings.properties as properties.
09 Apr 2024 15:12:41,109 INFO : Moving files to folder /Panorama Public/2024/MacCoss - Sample QC and System Suitability/figure6/Figure 6 Sample Internal Quality Controls and creating symlinks
09 Apr 2024 15:12:41,871 INFO : Aligning data files urls in folder: /Panorama Public/2024/MacCoss - Sample QC and System Suitability/figure6/Figure 6 Sample Internal Quality Controls
09 Apr 2024 15:12:41,880 INFO : Done importing folder archive for Figure 6 Sample Internal Quality Controls
09 Apr 2024 15:12:41,955 INFO : New folder created with inherited permissions: /Panorama Public/2024/MacCoss - Sample QC and System Suitability/figure6/Figure 6 System Suitability
09 Apr 2024 15:12:41,955 INFO : Loading folder archive for Figure 6 System Suitability
09 Apr 2024 15:12:41,957 INFO : Loading folder properties (folder type, settings and active modules)
09 Apr 2024 15:12:42,036 INFO : Done importing folder properties (folder type, settings and active modules)
09 Apr 2024 15:12:42,038 INFO : Loading container specific module properties
09 Apr 2024 15:12:42,043 INFO : Done importing container specific module properties
09 Apr 2024 15:12:42,046 INFO : Loading queries
09 Apr 2024 15:12:42,054 INFO : 1 query imported
09 Apr 2024 15:12:42,054 INFO : Done importing queries
09 Apr 2024 15:12:42,056 INFO : Loading etl definitions
09 Apr 2024 15:12:42,058 INFO : Loading wikis
09 Apr 2024 15:12:42,064 INFO : 1 wiki imported
09 Apr 2024 15:12:42,064 INFO : Done importing wikis
09 Apr 2024 15:12:42,069 INFO : Starting Data Class Importer
09 Apr 2024 15:12:42,069 INFO : No types XAR file to process.
09 Apr 2024 15:12:42,069 INFO : Finished Data Class Importer
09 Apr 2024 15:12:42,070 INFO : Starting to copy files
09 Apr 2024 15:12:42,071 INFO : Copied 0 files
09 Apr 2024 15:12:42,071 INFO : Ensuring exp.data rows exist for imported files
09 Apr 2024 15:12:42,082 INFO : Starting Sample Type Importer
09 Apr 2024 15:12:42,082 INFO : No types XAR file to process.
09 Apr 2024 15:12:42,082 INFO : Finished Sample Type Importer
09 Apr 2024 15:12:42,084 INFO : Loading xar
09 Apr 2024 15:12:42,811 INFO : Starting import from figure6_PRM_system_suitability_2024-02-05_19-48-55.sky.zip
09 Apr 2024 15:12:42,816 INFO : Starting to import Skyline document from figure6_PRM_system_suitability_2024-02-05_19-48-55.sky.zip
09 Apr 2024 15:12:42,818 INFO : Expanding figure6_PRM_system_suitability.skyd
09 Apr 2024 15:12:43,150 INFO : Expanding figure6_PRM_system_suitability.sky.view
09 Apr 2024 15:12:43,151 INFO : Expanding figure6_PRM_system_suitability.sky
09 Apr 2024 15:12:43,167 INFO : Expanding figure6_PRM_system_suitability.skyl
09 Apr 2024 15:12:43,226 INFO : 1% Done
09 Apr 2024 15:12:44,408 INFO : Inserting qc|PRTC|PRTC_Thermo
09 Apr 2024 15:12:44,432 INFO : 4% Done
09 Apr 2024 15:12:44,568 INFO : 8% Done
09 Apr 2024 15:12:44,709 INFO : 11% Done
09 Apr 2024 15:12:44,816 INFO : 13% Done
09 Apr 2024 15:12:44,916 INFO : 16% Done
09 Apr 2024 15:12:45,027 INFO : 20% Done
09 Apr 2024 15:12:45,171 INFO : 23% Done
09 Apr 2024 15:12:45,316 INFO : 28% Done
09 Apr 2024 15:12:45,473 INFO : 31% Done
09 Apr 2024 15:12:45,621 INFO : 37% Done
09 Apr 2024 15:12:45,807 INFO : 41% Done
09 Apr 2024 15:12:45,946 INFO : 43% Done
09 Apr 2024 15:12:46,052 INFO : 46% Done
09 Apr 2024 15:12:46,182 INFO : 50% Done
09 Apr 2024 15:12:46,343 INFO : 55% Done
09 Apr 2024 15:12:46,476 INFO : Inserting sp|P02769|ALBU_BOVIN
09 Apr 2024 15:12:46,501 INFO : 58% Done
09 Apr 2024 15:12:46,617 INFO : 60% Done
09 Apr 2024 15:12:46,696 INFO : Done parsing Skyline document.
09 Apr 2024 15:12:46,758 INFO : No group comparisons found.
09 Apr 2024 15:12:46,758 INFO : Calculating calibration curves
09 Apr 2024 15:12:47,170 INFO : 64% Done
09 Apr 2024 15:12:47,214 INFO : 68% Done
09 Apr 2024 15:12:47,219 INFO : Done calculating calibration curves.
09 Apr 2024 15:12:47,282 INFO : 98% Done
09 Apr 2024 15:12:47,282 INFO : Did not find any older sample file data to delete.
09 Apr 2024 15:12:47,288 INFO : Creating and populating temp tables for Proportion values
09 Apr 2024 15:12:47,297 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
09 Apr 2024 15:12:47,331 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
09 Apr 2024 15:12:47,354 INFO : Cleaning up temp tables
09 Apr 2024 15:12:47,687 INFO : Completed import of Skyline document from figure6_PRM_system_suitability_2024-02-05_19-48-55.sky.zip
09 Apr 2024 15:12:47,717 INFO : 100% Done
09 Apr 2024 15:12:47,757 INFO : Done importing xar
09 Apr 2024 15:12:47,762 INFO : Loading pages and webpart properties
09 Apr 2024 15:12:47,920 INFO : Done importing 7 page(s) with 10 webpart(s)
09 Apr 2024 15:12:47,920 INFO : Loading File Browser config
09 Apr 2024 15:12:47,920 INFO : Done importing File Browser config
09 Apr 2024 15:12:47,922 INFO : Starting Sample Status Data import
09 Apr 2024 15:12:47,922 INFO : No sample types XAR file to process.
09 Apr 2024 15:12:47,922 INFO : Finished importing Sample Status Data
09 Apr 2024 15:12:47,929 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
09 Apr 2024 15:12:47,933 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
09 Apr 2024 15:12:47,934 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
09 Apr 2024 15:12:47,935 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
09 Apr 2024 15:12:47,936 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
09 Apr 2024 15:12:47,936 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
09 Apr 2024 15:12:47,936 INFO : Starting QC Plot settings import
09 Apr 2024 15:12:47,941 INFO : Finished importing 9 QC Plot settings from PlotSettings.properties as properties.
09 Apr 2024 15:12:47,942 INFO : Moving files to folder /Panorama Public/2024/MacCoss - Sample QC and System Suitability/figure6/Figure 6 System Suitability and creating symlinks
09 Apr 2024 15:12:48,151 INFO : Aligning data files urls in folder: /Panorama Public/2024/MacCoss - Sample QC and System Suitability/figure6/Figure 6 System Suitability
09 Apr 2024 15:12:48,159 INFO : Done importing folder archive for Figure 6 System Suitability
09 Apr 2024 15:12:48,159 INFO : Done importing subfolders and container tabs
09 Apr 2024 15:12:48,162 INFO : Moving files to folder /Panorama Public/2024/MacCoss - Sample QC and System Suitability/figure6 and creating symlinks
09 Apr 2024 15:12:48,212 INFO : Aligning data files urls in folder: /Panorama Public/2024/MacCoss - Sample QC and System Suitability/figure6
09 Apr 2024 15:12:48,212 INFO : Done importing folder archive for figure6
09 Apr 2024 15:12:48,287 INFO : New folder created with inherited permissions: /Panorama Public/2024/MacCoss - Sample QC and System Suitability/figure7
09 Apr 2024 15:12:48,287 INFO : Loading folder archive for figure7
09 Apr 2024 15:12:48,289 INFO : Loading folder properties (folder type, settings and active modules)
09 Apr 2024 15:12:48,368 INFO : Done importing folder properties (folder type, settings and active modules)
09 Apr 2024 15:12:48,369 INFO : Loading container specific module properties
09 Apr 2024 15:12:48,375 INFO : Done importing container specific module properties
09 Apr 2024 15:12:48,376 INFO : Loading queries
09 Apr 2024 15:12:48,380 INFO : 1 query imported
09 Apr 2024 15:12:48,380 INFO : Done importing queries
09 Apr 2024 15:12:48,382 INFO : Loading etl definitions
09 Apr 2024 15:12:48,384 INFO : Loading wikis
09 Apr 2024 15:12:48,401 INFO : 1 wiki imported
09 Apr 2024 15:12:48,401 INFO : Done importing wikis
09 Apr 2024 15:12:48,403 INFO : Starting Data Class Importer
09 Apr 2024 15:12:48,403 INFO : No types XAR file to process.
09 Apr 2024 15:12:48,403 INFO : Finished Data Class Importer
09 Apr 2024 15:12:48,404 INFO : Starting to copy files
09 Apr 2024 15:12:48,404 INFO : Copied 0 files
09 Apr 2024 15:12:48,404 INFO : Ensuring exp.data rows exist for imported files
09 Apr 2024 15:12:48,417 INFO : Starting Sample Type Importer
09 Apr 2024 15:12:48,417 INFO : No types XAR file to process.
09 Apr 2024 15:12:48,418 INFO : Finished Sample Type Importer
09 Apr 2024 15:12:48,419 INFO : Loading xar
09 Apr 2024 15:12:48,423 INFO : Done importing xar
09 Apr 2024 15:12:48,425 INFO : Loading pages and webpart properties
09 Apr 2024 15:12:48,470 INFO : Done importing 2 page(s) with 4 webpart(s)
09 Apr 2024 15:12:48,470 INFO : Loading File Browser config
09 Apr 2024 15:12:48,470 INFO : Done importing File Browser config
09 Apr 2024 15:12:48,472 INFO : Starting Sample Status Data import
09 Apr 2024 15:12:48,472 INFO : No sample types XAR file to process.
09 Apr 2024 15:12:48,472 INFO : Finished importing Sample Status Data
09 Apr 2024 15:12:48,479 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
09 Apr 2024 15:12:48,482 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
09 Apr 2024 15:12:48,482 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
09 Apr 2024 15:12:48,483 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
09 Apr 2024 15:12:48,484 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
09 Apr 2024 15:12:48,484 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
09 Apr 2024 15:12:48,485 INFO : Loading subfolders and container tabs
09 Apr 2024 15:12:48,564 INFO : New folder created with inherited permissions: /Panorama Public/2024/MacCoss - Sample QC and System Suitability/figure7/Figure 7 Sample Internal Quality Controls
09 Apr 2024 15:12:48,564 INFO : Loading folder archive for Figure 7 Sample Internal Quality Controls
09 Apr 2024 15:12:48,570 INFO : Loading folder properties (folder type, settings and active modules)
09 Apr 2024 15:12:48,719 INFO : Done importing folder properties (folder type, settings and active modules)
09 Apr 2024 15:12:48,721 INFO : Loading container specific module properties
09 Apr 2024 15:12:48,727 INFO : Done importing container specific module properties
09 Apr 2024 15:12:48,729 INFO : Loading queries
09 Apr 2024 15:12:48,732 INFO : 1 query imported
09 Apr 2024 15:12:48,732 INFO : Done importing queries
09 Apr 2024 15:12:48,734 INFO : Loading etl definitions
09 Apr 2024 15:12:48,736 INFO : Loading wikis
09 Apr 2024 15:12:48,737 INFO : 0 wikis imported
09 Apr 2024 15:12:48,737 INFO : Done importing wikis
09 Apr 2024 15:12:48,738 INFO : Starting Data Class Importer
09 Apr 2024 15:12:48,739 INFO : No types XAR file to process.
09 Apr 2024 15:12:48,739 INFO : Finished Data Class Importer
09 Apr 2024 15:12:48,740 INFO : Starting to copy files
09 Apr 2024 15:12:48,740 INFO : Copied 0 files
09 Apr 2024 15:12:48,740 INFO : Ensuring exp.data rows exist for imported files
09 Apr 2024 15:12:48,752 INFO : Starting Sample Type Importer
09 Apr 2024 15:12:48,752 INFO : No types XAR file to process.
09 Apr 2024 15:12:48,753 INFO : Finished Sample Type Importer
09 Apr 2024 15:12:48,754 INFO : Loading xar
09 Apr 2024 15:12:49,212 INFO : Starting import from figure7_DIA_samples.sky.zip
09 Apr 2024 15:12:49,215 INFO : Starting to import Skyline document from figure7_DIA_samples.sky.zip
09 Apr 2024 15:12:49,217 INFO : Expanding figure7_DIA_samples.skyd
09 Apr 2024 15:12:49,451 INFO : Expanding figure7_DIA_samples.sky.view
09 Apr 2024 15:12:49,452 INFO : Expanding figure7_DIA_samples.sky
09 Apr 2024 15:12:49,471 INFO : Expanding figure7_DIA_samples.skyl
09 Apr 2024 15:12:49,487 INFO : 1% Done
09 Apr 2024 15:12:50,916 INFO : Inserting qc|PRTC|PRTC_Thermo
09 Apr 2024 15:12:50,944 INFO : 4% Done
09 Apr 2024 15:12:51,048 INFO : 7% Done
09 Apr 2024 15:12:51,158 INFO : 8% Done
09 Apr 2024 15:12:51,259 INFO : 11% Done
09 Apr 2024 15:12:51,386 INFO : 13% Done
09 Apr 2024 15:12:51,507 INFO : 16% Done
09 Apr 2024 15:12:51,625 INFO : 19% Done
09 Apr 2024 15:12:51,740 INFO : 22% Done
09 Apr 2024 15:12:51,864 INFO : 24% Done
09 Apr 2024 15:12:51,995 INFO : 28% Done
09 Apr 2024 15:12:52,175 INFO : 31% Done
09 Apr 2024 15:12:52,278 INFO : 33% Done
09 Apr 2024 15:12:52,356 INFO : 35% Done
09 Apr 2024 15:12:52,457 INFO : 38% Done
09 Apr 2024 15:12:52,576 INFO : 42% Done
09 Apr 2024 15:12:52,669 INFO : Inserting sp|P00924|ENO1_YEAST
09 Apr 2024 15:12:52,692 INFO : 44% Done
09 Apr 2024 15:12:52,807 INFO : 48% Done
09 Apr 2024 15:12:52,936 INFO : 52% Done
09 Apr 2024 15:12:53,118 INFO : 55% Done
09 Apr 2024 15:12:53,272 INFO : 57% Done
09 Apr 2024 15:12:53,367 INFO : 60% Done
09 Apr 2024 15:12:53,505 INFO : Done parsing Skyline document.
09 Apr 2024 15:12:53,569 INFO : No group comparisons found.
09 Apr 2024 15:12:53,569 INFO : Calculating calibration curves
09 Apr 2024 15:12:53,931 INFO : 64% Done
09 Apr 2024 15:12:54,106 INFO : 68% Done
09 Apr 2024 15:12:54,113 INFO : Done calculating calibration curves.
09 Apr 2024 15:12:54,170 INFO : 98% Done
09 Apr 2024 15:12:54,170 INFO : Did not find any older sample file data to delete.
09 Apr 2024 15:12:54,176 INFO : Creating and populating temp tables for Proportion values
09 Apr 2024 15:12:54,185 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
09 Apr 2024 15:12:54,214 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
09 Apr 2024 15:12:54,234 INFO : Cleaning up temp tables
09 Apr 2024 15:12:54,630 INFO : Completed import of Skyline document from figure7_DIA_samples.sky.zip
09 Apr 2024 15:12:54,633 INFO : 100% Done
09 Apr 2024 15:12:54,654 INFO : Done importing xar
09 Apr 2024 15:12:54,656 INFO : Loading pages and webpart properties
09 Apr 2024 15:12:54,811 INFO : Done importing 7 page(s) with 11 webpart(s)
09 Apr 2024 15:12:54,812 INFO : Loading File Browser config
09 Apr 2024 15:12:54,812 INFO : Done importing File Browser config
09 Apr 2024 15:12:54,814 INFO : Starting Sample Status Data import
09 Apr 2024 15:12:54,814 INFO : No sample types XAR file to process.
09 Apr 2024 15:12:54,814 INFO : Finished importing Sample Status Data
09 Apr 2024 15:12:54,822 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
09 Apr 2024 15:12:54,828 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
09 Apr 2024 15:12:54,829 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
09 Apr 2024 15:12:54,830 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
09 Apr 2024 15:12:54,831 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
09 Apr 2024 15:12:54,831 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
09 Apr 2024 15:12:54,831 INFO : Starting QC Plot settings import
09 Apr 2024 15:12:54,837 INFO : Finished importing 8 QC Plot settings from PlotSettings.properties as properties.
09 Apr 2024 15:12:54,839 INFO : Moving files to folder /Panorama Public/2024/MacCoss - Sample QC and System Suitability/figure7/Figure 7 Sample Internal Quality Controls and creating symlinks
09 Apr 2024 15:12:55,160 INFO : Aligning data files urls in folder: /Panorama Public/2024/MacCoss - Sample QC and System Suitability/figure7/Figure 7 Sample Internal Quality Controls
09 Apr 2024 15:12:55,169 INFO : Done importing folder archive for Figure 7 Sample Internal Quality Controls
09 Apr 2024 15:12:55,169 INFO : Done importing subfolders and container tabs
09 Apr 2024 15:12:55,170 INFO : Moving files to folder /Panorama Public/2024/MacCoss - Sample QC and System Suitability/figure7 and creating symlinks
09 Apr 2024 15:12:55,574 INFO : Aligning data files urls in folder: /Panorama Public/2024/MacCoss - Sample QC and System Suitability/figure7
09 Apr 2024 15:12:55,575 INFO : Done importing folder archive for figure7
09 Apr 2024 15:12:55,664 INFO : New folder created with inherited permissions: /Panorama Public/2024/MacCoss - Sample QC and System Suitability/SupplementalFigure1
09 Apr 2024 15:12:55,664 INFO : Loading folder archive for SupplementalFigure1
09 Apr 2024 15:12:55,676 INFO : Loading folder properties (folder type, settings and active modules)
09 Apr 2024 15:12:55,804 INFO : Done importing folder properties (folder type, settings and active modules)
09 Apr 2024 15:12:55,806 INFO : Loading container specific module properties
09 Apr 2024 15:12:55,812 INFO : Done importing container specific module properties
09 Apr 2024 15:12:55,815 INFO : Loading queries
09 Apr 2024 15:12:55,819 INFO : 1 query imported
09 Apr 2024 15:12:55,819 INFO : Done importing queries
09 Apr 2024 15:12:55,821 INFO : Loading etl definitions
09 Apr 2024 15:12:55,822 INFO : Loading wikis
09 Apr 2024 15:12:55,840 INFO : 1 wiki imported
09 Apr 2024 15:12:55,840 INFO : Done importing wikis
09 Apr 2024 15:12:55,842 INFO : Starting Data Class Importer
09 Apr 2024 15:12:55,843 INFO : No types XAR file to process.
09 Apr 2024 15:12:55,843 INFO : Finished Data Class Importer
09 Apr 2024 15:12:55,844 INFO : Starting to copy files
09 Apr 2024 15:12:55,844 INFO : Copied 0 files
09 Apr 2024 15:12:55,844 INFO : Ensuring exp.data rows exist for imported files
09 Apr 2024 15:12:55,855 INFO : Starting Sample Type Importer
09 Apr 2024 15:12:55,855 INFO : No types XAR file to process.
09 Apr 2024 15:12:55,855 INFO : Finished Sample Type Importer
09 Apr 2024 15:12:55,857 INFO : Loading xar
09 Apr 2024 15:12:55,861 INFO : Done importing xar
09 Apr 2024 15:12:55,863 INFO : Loading pages and webpart properties
09 Apr 2024 15:12:55,906 INFO : Done importing 2 page(s) with 3 webpart(s)
09 Apr 2024 15:12:55,906 INFO : Loading File Browser config
09 Apr 2024 15:12:55,906 INFO : Done importing File Browser config
09 Apr 2024 15:12:55,908 INFO : Starting Sample Status Data import
09 Apr 2024 15:12:55,909 INFO : No sample types XAR file to process.
09 Apr 2024 15:12:55,909 INFO : Finished importing Sample Status Data
09 Apr 2024 15:12:55,915 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
09 Apr 2024 15:12:55,918 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
09 Apr 2024 15:12:55,919 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
09 Apr 2024 15:12:55,919 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
09 Apr 2024 15:12:55,920 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
09 Apr 2024 15:12:55,920 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
09 Apr 2024 15:12:55,921 INFO : Moving files to folder /Panorama Public/2024/MacCoss - Sample QC and System Suitability/SupplementalFigure1 and creating symlinks
09 Apr 2024 15:12:55,938 INFO : Aligning data files urls in folder: /Panorama Public/2024/MacCoss - Sample QC and System Suitability/SupplementalFigure1
09 Apr 2024 15:12:55,939 INFO : Done importing folder archive for SupplementalFigure1
09 Apr 2024 15:12:56,019 INFO : New folder created with inherited permissions: /Panorama Public/2024/MacCoss - Sample QC and System Suitability/Reference Information
09 Apr 2024 15:12:56,019 INFO : Loading folder archive for Reference Information
09 Apr 2024 15:12:56,021 INFO : Loading folder properties (folder type, settings and active modules)
09 Apr 2024 15:12:56,101 INFO : Done importing folder properties (folder type, settings and active modules)
09 Apr 2024 15:12:56,103 INFO : Loading container specific module properties
09 Apr 2024 15:12:56,109 INFO : Done importing container specific module properties
09 Apr 2024 15:12:56,111 INFO : Loading queries
09 Apr 2024 15:12:56,115 INFO : 1 query imported
09 Apr 2024 15:12:56,115 INFO : Done importing queries
09 Apr 2024 15:12:56,117 INFO : Loading etl definitions
09 Apr 2024 15:12:56,118 INFO : Loading wikis
09 Apr 2024 15:12:56,128 INFO : 1 wiki imported
09 Apr 2024 15:12:56,128 INFO : Done importing wikis
09 Apr 2024 15:12:56,131 INFO : Starting Data Class Importer
09 Apr 2024 15:12:56,131 INFO : No types XAR file to process.
09 Apr 2024 15:12:56,131 INFO : Finished Data Class Importer
09 Apr 2024 15:12:56,132 INFO : Starting to copy files
09 Apr 2024 15:12:56,132 INFO : Copied 0 files
09 Apr 2024 15:12:56,132 INFO : Ensuring exp.data rows exist for imported files
09 Apr 2024 15:12:56,148 INFO : Starting Sample Type Importer
09 Apr 2024 15:12:56,149 INFO : No types XAR file to process.
09 Apr 2024 15:12:56,149 INFO : Finished Sample Type Importer
09 Apr 2024 15:12:56,150 INFO : Loading xar
09 Apr 2024 15:12:56,155 INFO : Done importing xar
09 Apr 2024 15:12:56,157 INFO : Loading pages and webpart properties
09 Apr 2024 15:12:56,203 INFO : Done importing 2 page(s) with 3 webpart(s)
09 Apr 2024 15:12:56,204 INFO : Loading File Browser config
09 Apr 2024 15:12:56,204 INFO : Done importing File Browser config
09 Apr 2024 15:12:56,205 INFO : Starting Sample Status Data import
09 Apr 2024 15:12:56,205 INFO : No sample types XAR file to process.
09 Apr 2024 15:12:56,206 INFO : Finished importing Sample Status Data
09 Apr 2024 15:12:56,213 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
09 Apr 2024 15:12:56,217 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
09 Apr 2024 15:12:56,218 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
09 Apr 2024 15:12:56,219 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
09 Apr 2024 15:12:56,220 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
09 Apr 2024 15:12:56,220 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
09 Apr 2024 15:12:56,221 INFO : Moving files to folder /Panorama Public/2024/MacCoss - Sample QC and System Suitability/Reference Information and creating symlinks
09 Apr 2024 15:12:56,306 INFO : Aligning data files urls in folder: /Panorama Public/2024/MacCoss - Sample QC and System Suitability/Reference Information
09 Apr 2024 15:12:56,306 INFO : Done importing folder archive for Reference Information
09 Apr 2024 15:12:56,306 INFO : Done importing subfolders and container tabs
09 Apr 2024 15:12:56,308 INFO : Moving files to folder /Panorama Public/2024/MacCoss - Sample QC and System Suitability and creating symlinks
09 Apr 2024 15:12:56,313 INFO : Aligning data files urls in folder: /Panorama Public/2024/MacCoss - Sample QC and System Suitability
09 Apr 2024 15:12:56,313 INFO : Importing files metadata.
09 Apr 2024 15:12:56,335 INFO :
09 Apr 2024 15:12:56,335 INFO : Experiment import completed successfully.
09 Apr 2024 15:12:56,335 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
09 Apr 2024 15:12:56,363 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
09 Apr 2024 15:12:56,363 INFO :
09 Apr 2024 15:12:56,363 INFO : Checking for library folders.
09 Apr 2024 15:12:56,379 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
09 Apr 2024 15:12:56,400 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
09 Apr 2024 15:12:56,400 INFO :
09 Apr 2024 15:12:56,400 INFO : Finishing up experiment copy.
09 Apr 2024 15:12:56,402 INFO : Updating TargetedMS experiment entry in target folder /Panorama Public/2024/MacCoss - Sample QC and System Suitability
09 Apr 2024 15:12:56,403 INFO : Setting version on new experiment to 1
09 Apr 2024 15:12:56,406 INFO : Updating permanent link to point to the new copy of the data.
09 Apr 2024 15:12:56,539 INFO : Removing copy permissions given to Panorama Public
09 Apr 2024 15:12:56,548 INFO : Adding read permissions to all users that are folder admins in the source folder.
09 Apr 2024 15:12:56,548 INFO : Assigning ReaderRole to elhuang@uw.edu
09 Apr 2024 15:12:56,548 INFO : Assigning ReaderRole to wendyi@labkey.com
09 Apr 2024 15:12:56,548 INFO : Assigning ReaderRole to rj8@uw.edu
09 Apr 2024 15:12:56,548 INFO : Assigning ReaderRole to ktsantil@uw.edu
09 Apr 2024 15:12:56,548 INFO : Assigning ReaderRole to mauraisa@uw.edu
09 Apr 2024 15:12:56,548 INFO : Assigning ReaderRole to maccoss@uw.edu
09 Apr 2024 15:12:56,548 INFO : Assigning ReaderRole to genn@uw.edu
09 Apr 2024 15:12:56,548 INFO : Assigning PanoramaPublicSubmitterRole to ktsantil@uw.edu
09 Apr 2024 15:12:56,548 INFO : Assigning PanoramaPublicSubmitterRole to maccoss@uw.edu
09 Apr 2024 15:12:56,625 INFO : Adding user ktsantil@uw.edu to group Panorama Public Submitters
09 Apr 2024 15:12:56,669 INFO : User maccoss@uw.edu is already a member of group Panorama Public Submitters
09 Apr 2024 15:12:56,669 INFO : Updating the 'Raw Data' tab configuration
09 Apr 2024 15:12:56,674 INFO : Making folder public.
09 Apr 2024 15:12:56,737 INFO : Hiding the Data Pipeline tab.
09 Apr 2024 15:12:56,770 INFO : Updating Submission. Setting copiedExperimentId to 1796
09 Apr 2024 15:13:05,815 INFO : Assigning a ProteomeXchange ID.
09 Apr 2024 15:13:06,054 INFO : Assigned ProteomeXchange ID: PXD051318
09 Apr 2024 15:13:06,054 INFO : Assigning a DOI.
09 Apr 2024 15:13:06,904 INFO : Assigned DOI: 10.6069/hmtb-tp04
09 Apr 2024 15:13:06,989 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'