06 Nov 2024 10:33:24,741 INFO : Copying experiment "SysQuan: repurposing SILAC mice for the affordable absolute quantitation of the human proteome" from folder /LDI-McGill University - Borchers Lab/SysQuan to /Panorama Public/2024/LDI-McGill University Borchers Lab - SysQuan
06 Nov 2024 10:33:24,741 INFO : =======================================
06 Nov 2024 10:33:24,758 DEBUG: Resetting Job ID: 9d92d781-7e9a-103d-a6fe-dc22ffcd6791
06 Nov 2024 10:33:24,782 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
06 Nov 2024 10:33:24,782 INFO : 
06 Nov 2024 10:33:24,782 INFO : Exporting experiment.
06 Nov 2024 10:33:35,497 INFO : Exporting files metadata.
06 Nov 2024 10:33:35,497 DEBUG: [/LDI-McGill University - Borchers Lab/SysQuan]  Writing files metadata to /data/labkey/files/Panorama Public/2024/LDI-McGill University Borchers Lab - SysQuan/@files/export
06 Nov 2024 10:33:35,500 INFO : 
06 Nov 2024 10:33:35,500 INFO : Experiment export completed successfully.
06 Nov 2024 10:33:35,500 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
06 Nov 2024 10:33:35,522 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
06 Nov 2024 10:33:35,522 INFO : 
06 Nov 2024 10:33:35,522 INFO : Importing experiment.
06 Nov 2024 10:33:35,524 DEBUG: [/Panorama Public/2024/LDI-McGill University Borchers Lab - SysQuan] Importing folder properties from: /data/labkey/files/Panorama Public/2024/LDI-McGill University Borchers Lab - SysQuan/@files/export
06 Nov 2024 10:33:35,525 INFO : Loading folder properties (folder type, settings and active modules)
06 Nov 2024 10:33:35,525 DEBUG: [/Panorama Public/2024/LDI-McGill University Borchers Lab - SysQuan] Folder type: Targeted MS
06 Nov 2024 10:33:35,525 DEBUG: [/Panorama Public/2024/LDI-McGill University Borchers Lab - SysQuan] Active modules: TargetedMS, Announcements, API, Assay, Wiki, FileContent, Pipeline, PanoramaPublic, Query, Experiment, Search, MS2, Core, Issues
06 Nov 2024 10:33:35,599 INFO : Done importing folder properties (folder type, settings and active modules)
06 Nov 2024 10:33:35,601 INFO : Loading container specific module properties
06 Nov 2024 10:33:35,604 INFO : Done importing container specific module properties
06 Nov 2024 10:33:35,605 INFO : Loading queries
06 Nov 2024 10:33:35,608 INFO : 1 query imported
06 Nov 2024 10:33:35,608 INFO : Done importing queries
06 Nov 2024 10:33:35,609 INFO : Loading grid views
06 Nov 2024 10:33:35,613 INFO : 1 custom view imported
06 Nov 2024 10:33:35,613 INFO : Done importing grid views
06 Nov 2024 10:33:35,614 INFO : Loading etl definitions
06 Nov 2024 10:33:35,615 INFO : Loading wikis
06 Nov 2024 10:33:35,616 INFO : 0 wikis imported
06 Nov 2024 10:33:35,616 INFO : Done importing wikis
06 Nov 2024 10:33:35,617 INFO : Starting Data Class Importer
06 Nov 2024 10:33:35,617 INFO : No types XAR file to process.
06 Nov 2024 10:33:35,617 INFO : Finished Data Class Importer
06 Nov 2024 10:33:35,618 INFO : Starting to copy files
06 Nov 2024 10:33:35,618 INFO : Copied 0 files
06 Nov 2024 10:33:35,618 INFO : Ensuring exp.data rows exist for imported files
06 Nov 2024 10:33:35,694 INFO : Starting Sample Type Importer
06 Nov 2024 10:33:35,694 INFO : No types XAR file to process.
06 Nov 2024 10:33:35,694 INFO : Finished Sample Type Importer
06 Nov 2024 10:33:35,696 INFO : Loading xar
06 Nov 2024 10:33:37,972 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-14148:TargetedMS.ImportSkyZip'
06 Nov 2024 10:33:37,974 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-14148:TargetedMS.ImportSkyZip.Core'
06 Nov 2024 10:33:37,976 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-14148:TargetedMS.ImportSkyZip.Output'
06 Nov 2024 10:33:37,976 DEBUG: Protocol import complete
06 Nov 2024 10:33:37,977 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-14148:SysQuan%3A+repurposing+SILAC+mice+for+the+affordable+absolute+quantitation+of+the+human+proteome'
06 Nov 2024 10:33:37,977 DEBUG: Experiment/Run group import complete
06 Nov 2024 10:33:37,985 DEBUG: Protocol action set import complete
06 Nov 2024 10:33:37,993 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-14148:TargetedMS.ImportSkyZip'
06 Nov 2024 10:33:38,000 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-14148:e3fbfaec-7dbd-103d-a6fe-dc22ffcd6791'
06 Nov 2024 10:33:38,003 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-14148:e3fbfa6c-7dbd-103d-a6fe-dc22ffcd6791'
06 Nov 2024 10:33:38,003 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-14148:TargetedMS.ImportSkyZip.Core'
06 Nov 2024 10:33:38,005 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-14148:TargetedMS.ImportSkyZip.Output'
06 Nov 2024 10:33:38,005 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-14148:e3fbfe25-7dbd-103d-a6fe-dc22ffcd6791'
06 Nov 2024 10:33:38,010 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2024/LDI-McGill%20University%20Borchers%20Lab%20-%20SysQuan/@files/export/xar/experiments_and_runs.xar.exploded/Run229812/20241104_SysQuan_2024-11-05_10-58-26/20241104_SysQuan.skyd into the system
06 Nov 2024 10:33:38,011 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2024/LDI-McGill%20University%20Borchers%20Lab%20-%20SysQuan/@files/export/xar/experiments_and_runs.xar.exploded/Run229812/20241104_SysQuan_2024-11-05_10-58-26/20241104_SysQuan.skyd into the system
06 Nov 2024 10:33:38,011 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2024/LDI-McGill%20University%20Borchers%20Lab%20-%20SysQuan/@files/export/xar/experiments_and_runs.xar.exploded/Run229812/20241104_SysQuan_2024-11-05_10-58-26.sky.zip into the system
06 Nov 2024 10:33:38,012 INFO : Starting import from 20241104_SysQuan_2024-11-05_10-58-26.sky.zip
06 Nov 2024 10:33:38,015 INFO : Starting to import Skyline document from 20241104_SysQuan_2024-11-05_10-58-26.sky.zip
06 Nov 2024 10:33:38,016 INFO : Expanding Homo sapiens sapiens proteome.protdb
06 Nov 2024 10:33:42,094 INFO : Expanding 20241104_SysQuan.skyd
06 Nov 2024 10:33:42,253 INFO : Expanding 20241104_SysQuan.sky.view
06 Nov 2024 10:33:42,254 INFO : Expanding 20241104_SysQuan.sky
06 Nov 2024 10:33:42,257 INFO : Reading Skyline file, 20241104_SysQuan.sky, to determine if the TransitionChromInfos in the document should be stored...
06 Nov 2024 10:33:42,260 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
06 Nov 2024 10:33:42,261 WARN : The version of this Skyline document is 24.11. This is newer than the highest supported version 23.1
06 Nov 2024 10:33:42,264 INFO : 2% Done
06 Nov 2024 10:33:42,366 DEBUG: Starting to load chromatogram headers
06 Nov 2024 10:33:42,369 DEBUG: Done loading chromatogram headers
06 Nov 2024 10:33:42,543 INFO : Inserting sp|O00483|NDUA4_HUMAN
06 Nov 2024 10:33:42,549 INFO : 6% Done
06 Nov 2024 10:33:42,564 DEBUG: Total peptides inserted: 1
06 Nov 2024 10:33:42,564 INFO : Inserting sp|O43181|NDUS4_HUMAN
06 Nov 2024 10:33:42,568 INFO : 11% Done
06 Nov 2024 10:33:42,586 DEBUG: Total peptides inserted: 1
06 Nov 2024 10:33:42,587 INFO : 12% Done
06 Nov 2024 10:33:42,587 INFO : Inserting sp|P00966|ASSY_HUMAN
06 Nov 2024 10:33:42,591 INFO : 17% Done
06 Nov 2024 10:33:42,606 DEBUG: Total peptides inserted: 1
06 Nov 2024 10:33:42,606 INFO : Inserting sp|P04406|G3P_HUMAN
06 Nov 2024 10:33:42,611 INFO : 22% Done
06 Nov 2024 10:33:42,629 DEBUG: Total peptides inserted: 1
06 Nov 2024 10:33:42,630 INFO : 23% Done
06 Nov 2024 10:33:42,630 INFO : Inserting sp|P10515|ODP2_HUMAN
06 Nov 2024 10:33:42,634 INFO : 28% Done
06 Nov 2024 10:33:42,653 DEBUG: Total peptides inserted: 1
06 Nov 2024 10:33:42,653 INFO : Inserting sp|P15954|COX7C_HUMAN
06 Nov 2024 10:33:42,659 INFO : 34% Done
06 Nov 2024 10:33:42,676 DEBUG: Total peptides inserted: 1
06 Nov 2024 10:33:42,676 INFO : Inserting sp|P17174|AATC_HUMAN
06 Nov 2024 10:33:42,681 INFO : 41% Done
06 Nov 2024 10:33:42,698 DEBUG: Total peptides inserted: 1
06 Nov 2024 10:33:42,698 INFO : Inserting sp|P19404|NDUV2_HUMAN
06 Nov 2024 10:33:42,703 INFO : 46% Done
06 Nov 2024 10:33:42,720 DEBUG: Total peptides inserted: 1
06 Nov 2024 10:33:42,720 INFO : Inserting sp|P21399|ACOC_HUMAN
06 Nov 2024 10:33:42,725 INFO : 53% Done
06 Nov 2024 10:33:42,742 DEBUG: Total peptides inserted: 1
06 Nov 2024 10:33:42,742 INFO : Inserting sp|P49821|NDUV1_HUMAN
06 Nov 2024 10:33:42,746 INFO : 58% Done
06 Nov 2024 10:33:42,761 DEBUG: Total peptides inserted: 1
06 Nov 2024 10:33:42,761 INFO : Inserting sp|P53597|SUCA_HUMAN
06 Nov 2024 10:33:42,766 INFO : 62% Done
06 Nov 2024 10:33:42,781 DEBUG: Total peptides inserted: 1
06 Nov 2024 10:33:42,781 INFO : Inserting sp|Q00325|MPCP_HUMAN
06 Nov 2024 10:33:42,786 INFO : 68% Done
06 Nov 2024 10:33:42,803 DEBUG: Total peptides inserted: 1
06 Nov 2024 10:33:42,804 INFO : 69% Done
06 Nov 2024 10:33:42,804 INFO : Inserting sp|Q16836|HCDH_HUMAN
06 Nov 2024 10:33:42,809 INFO : 74% Done
06 Nov 2024 10:33:42,826 DEBUG: Total peptides inserted: 1
06 Nov 2024 10:33:42,826 INFO : Inserting sp|Q9P2R7|SUCB1_HUMAN
06 Nov 2024 10:33:42,831 INFO : 80% Done
06 Nov 2024 10:33:42,849 DEBUG: Total peptides inserted: 1
06 Nov 2024 10:33:42,849 INFO : Done parsing Skyline document.
06 Nov 2024 10:33:42,912 INFO : No group comparisons found.
06 Nov 2024 10:33:42,912 INFO : Calculating calibration curves
06 Nov 2024 10:33:42,912 DEBUG: Calculating calibration curve for sp|O00483|NDUA4_HUMAN, 1 of 14
06 Nov 2024 10:33:42,924 INFO : 81% Done
06 Nov 2024 10:33:42,924 DEBUG: Calculating calibration curve for sp|O43181|NDUS4_HUMAN, 2 of 14
06 Nov 2024 10:33:42,937 INFO : 83% Done
06 Nov 2024 10:33:42,937 DEBUG: Calculating calibration curve for sp|P00966|ASSY_HUMAN, 3 of 14
06 Nov 2024 10:33:42,948 INFO : 84% Done
06 Nov 2024 10:33:42,948 DEBUG: Calculating calibration curve for sp|P04406|G3P_HUMAN, 4 of 14
06 Nov 2024 10:33:42,960 INFO : 85% Done
06 Nov 2024 10:33:42,960 DEBUG: Calculating calibration curve for sp|P10515|ODP2_HUMAN, 5 of 14
06 Nov 2024 10:33:42,972 INFO : 86% Done
06 Nov 2024 10:33:42,972 DEBUG: Calculating calibration curve for sp|P15954|COX7C_HUMAN, 6 of 14
06 Nov 2024 10:33:42,986 INFO : 88% Done
06 Nov 2024 10:33:42,986 DEBUG: Calculating calibration curve for sp|P17174|AATC_HUMAN, 7 of 14
06 Nov 2024 10:33:42,998 INFO : 89% Done
06 Nov 2024 10:33:42,998 DEBUG: Calculating calibration curve for sp|P19404|NDUV2_HUMAN, 8 of 14
06 Nov 2024 10:33:43,011 INFO : 90% Done
06 Nov 2024 10:33:43,011 DEBUG: Calculating calibration curve for sp|P21399|ACOC_HUMAN, 9 of 14
06 Nov 2024 10:33:43,023 INFO : 92% Done
06 Nov 2024 10:33:43,023 DEBUG: Calculating calibration curve for sp|P49821|NDUV1_HUMAN, 10 of 14
06 Nov 2024 10:33:43,034 INFO : 93% Done
06 Nov 2024 10:33:43,034 DEBUG: Calculating calibration curve for sp|P53597|SUCA_HUMAN, 11 of 14
06 Nov 2024 10:33:43,045 INFO : 94% Done
06 Nov 2024 10:33:43,045 DEBUG: Calculating calibration curve for sp|Q00325|MPCP_HUMAN, 12 of 14
06 Nov 2024 10:33:43,057 INFO : 95% Done
06 Nov 2024 10:33:43,057 DEBUG: Calculating calibration curve for sp|Q16836|HCDH_HUMAN, 13 of 14
06 Nov 2024 10:33:43,069 INFO : 97% Done
06 Nov 2024 10:33:43,069 DEBUG: Calculating calibration curve for sp|Q9P2R7|SUCB1_HUMAN, 14 of 14
06 Nov 2024 10:33:43,081 INFO : 98% Done
06 Nov 2024 10:33:43,096 INFO : Done calculating calibration curves.
06 Nov 2024 10:33:43,096 INFO : Creating and populating temp tables for Proportion values
06 Nov 2024 10:33:43,102 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
06 Nov 2024 10:33:43,115 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
06 Nov 2024 10:33:43,119 INFO : Cleaning up temp tables
06 Nov 2024 10:33:43,449 INFO : Completed import of Skyline document from 20241104_SysQuan_2024-11-05_10-58-26.sky.zip
06 Nov 2024 10:33:43,451 INFO : 100% Done
06 Nov 2024 10:33:43,456 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2024/LDI-McGill%20University%20Borchers%20Lab%20-%20SysQuan/@files/export/xar/experiments_and_runs.xar.exploded/Run229812/20241104_SysQuan_2024-11-05_10-58-26.sky.zip into the system
06 Nov 2024 10:33:43,460 INFO : Done importing xar
06 Nov 2024 10:33:43,461 INFO : Loading pages and webpart properties
06 Nov 2024 10:33:43,525 INFO : Done importing 3 page(s) with 5 webpart(s)
06 Nov 2024 10:33:43,526 INFO : Loading File Browser config
06 Nov 2024 10:33:43,526 INFO : Done importing File Browser config
06 Nov 2024 10:33:43,527 INFO : Starting Sample Status Data import
06 Nov 2024 10:33:43,527 INFO : No sample types XAR file to process.
06 Nov 2024 10:33:43,527 INFO : Finished importing Sample Status Data
06 Nov 2024 10:33:43,532 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
06 Nov 2024 10:33:43,534 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
06 Nov 2024 10:33:43,535 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
06 Nov 2024 10:33:43,535 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
06 Nov 2024 10:33:43,536 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
06 Nov 2024 10:33:43,536 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
06 Nov 2024 10:33:43,538 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
06 Nov 2024 10:33:43,547 INFO : Moving files to folder /Panorama Public/2024/LDI-McGill University Borchers Lab - SysQuan and creating symlinks
06 Nov 2024 10:33:43,549 DEBUG: Directory created: /data/labkey/files/Panorama Public/2024/LDI-McGill University Borchers Lab - SysQuan/@files/RawFiles
06 Nov 2024 10:33:43,550 DEBUG: Moved file /data/labkey/files/LDI-McGill University - Borchers Lab/SysQuan/@files/RawFiles/MouseLiver+HumanLiver_1to1_NAT_92.d.zip to /data/labkey/files/Panorama Public/2024/LDI-McGill University Borchers Lab - SysQuan/@files/RawFiles/MouseLiver+HumanLiver_1to1_NAT_92.d.zip
06 Nov 2024 10:33:43,551 DEBUG: Created symlink /data/labkey/files/LDI-McGill University - Borchers Lab/SysQuan/@files/RawFiles/MouseLiver+HumanLiver_1to1_NAT_92.d.zip targeting /data/labkey/files/Panorama Public/2024/LDI-McGill University Borchers Lab - SysQuan/@files/RawFiles/MouseLiver+HumanLiver_1to1_NAT_92.d.zip
06 Nov 2024 10:33:43,553 DEBUG: Moved file /data/labkey/files/LDI-McGill University - Borchers Lab/SysQuan/@files/RawFiles/MouseLiver+100fmolNAT_92.d.zip to /data/labkey/files/Panorama Public/2024/LDI-McGill University Borchers Lab - SysQuan/@files/RawFiles/MouseLiver+100fmolNAT_92.d.zip
06 Nov 2024 10:33:43,554 DEBUG: Created symlink /data/labkey/files/LDI-McGill University - Borchers Lab/SysQuan/@files/RawFiles/MouseLiver+100fmolNAT_92.d.zip targeting /data/labkey/files/Panorama Public/2024/LDI-McGill University Borchers Lab - SysQuan/@files/RawFiles/MouseLiver+100fmolNAT_92.d.zip
06 Nov 2024 10:33:43,555 DEBUG: Moved file /data/labkey/files/LDI-McGill University - Borchers Lab/SysQuan/@files/RawFiles/MouseLiver+01fmolNAT_92.d.zip to /data/labkey/files/Panorama Public/2024/LDI-McGill University Borchers Lab - SysQuan/@files/RawFiles/MouseLiver+01fmolNAT_92.d.zip
06 Nov 2024 10:33:43,556 DEBUG: Created symlink /data/labkey/files/LDI-McGill University - Borchers Lab/SysQuan/@files/RawFiles/MouseLiver+01fmolNAT_92.d.zip targeting /data/labkey/files/Panorama Public/2024/LDI-McGill University Borchers Lab - SysQuan/@files/RawFiles/MouseLiver+01fmolNAT_92.d.zip
06 Nov 2024 10:33:43,557 DEBUG: Moved file /data/labkey/files/LDI-McGill University - Borchers Lab/SysQuan/@files/RawFiles/MouseLiver+1fmolNAT_92.d.zip to /data/labkey/files/Panorama Public/2024/LDI-McGill University Borchers Lab - SysQuan/@files/RawFiles/MouseLiver+1fmolNAT_92.d.zip
06 Nov 2024 10:33:43,558 DEBUG: Created symlink /data/labkey/files/LDI-McGill University - Borchers Lab/SysQuan/@files/RawFiles/MouseLiver+1fmolNAT_92.d.zip targeting /data/labkey/files/Panorama Public/2024/LDI-McGill University Borchers Lab - SysQuan/@files/RawFiles/MouseLiver+1fmolNAT_92.d.zip
06 Nov 2024 10:33:43,560 DEBUG: Moved file /data/labkey/files/LDI-McGill University - Borchers Lab/SysQuan/@files/RawFiles/MouseLiver+1000fmolNAT_92.d.zip to /data/labkey/files/Panorama Public/2024/LDI-McGill University Borchers Lab - SysQuan/@files/RawFiles/MouseLiver+1000fmolNAT_92.d.zip
06 Nov 2024 10:33:43,561 DEBUG: Created symlink /data/labkey/files/LDI-McGill University - Borchers Lab/SysQuan/@files/RawFiles/MouseLiver+1000fmolNAT_92.d.zip targeting /data/labkey/files/Panorama Public/2024/LDI-McGill University Borchers Lab - SysQuan/@files/RawFiles/MouseLiver+1000fmolNAT_92.d.zip
06 Nov 2024 10:33:43,562 DEBUG: Moved file /data/labkey/files/LDI-McGill University - Borchers Lab/SysQuan/@files/RawFiles/MouseLiver+10fmolNAT_92.d.zip to /data/labkey/files/Panorama Public/2024/LDI-McGill University Borchers Lab - SysQuan/@files/RawFiles/MouseLiver+10fmolNAT_92.d.zip
06 Nov 2024 10:33:43,563 DEBUG: Created symlink /data/labkey/files/LDI-McGill University - Borchers Lab/SysQuan/@files/RawFiles/MouseLiver+10fmolNAT_92.d.zip targeting /data/labkey/files/Panorama Public/2024/LDI-McGill University Borchers Lab - SysQuan/@files/RawFiles/MouseLiver+10fmolNAT_92.d.zip
06 Nov 2024 10:33:43,564 DEBUG: Directory created: /data/labkey/files/Panorama Public/2024/LDI-McGill University Borchers Lab - SysQuan/@files/20241104_SysQuan_2024-11-05_10-58-26
06 Nov 2024 10:33:43,565 DEBUG: Moved file /data/labkey/files/LDI-McGill University - Borchers Lab/SysQuan/@files/20241104_SysQuan_2024-11-05_10-58-26/20241104_SysQuan.skyd to /data/labkey/files/Panorama Public/2024/LDI-McGill University Borchers Lab - SysQuan/@files/20241104_SysQuan_2024-11-05_10-58-26/20241104_SysQuan.skyd
06 Nov 2024 10:33:43,566 DEBUG: Created symlink /data/labkey/files/LDI-McGill University - Borchers Lab/SysQuan/@files/20241104_SysQuan_2024-11-05_10-58-26/20241104_SysQuan.skyd targeting /data/labkey/files/Panorama Public/2024/LDI-McGill University Borchers Lab - SysQuan/@files/20241104_SysQuan_2024-11-05_10-58-26/20241104_SysQuan.skyd
06 Nov 2024 10:33:43,567 DEBUG: Moved file /data/labkey/files/LDI-McGill University - Borchers Lab/SysQuan/@files/20241104_SysQuan_2024-11-05_10-58-26/20241104_SysQuan.sky.view to /data/labkey/files/Panorama Public/2024/LDI-McGill University Borchers Lab - SysQuan/@files/20241104_SysQuan_2024-11-05_10-58-26/20241104_SysQuan.sky.view
06 Nov 2024 10:33:43,568 DEBUG: Created symlink /data/labkey/files/LDI-McGill University - Borchers Lab/SysQuan/@files/20241104_SysQuan_2024-11-05_10-58-26/20241104_SysQuan.sky.view targeting /data/labkey/files/Panorama Public/2024/LDI-McGill University Borchers Lab - SysQuan/@files/20241104_SysQuan_2024-11-05_10-58-26/20241104_SysQuan.sky.view
06 Nov 2024 10:33:43,569 DEBUG: Moved file /data/labkey/files/LDI-McGill University - Borchers Lab/SysQuan/@files/20241104_SysQuan_2024-11-05_10-58-26/20241104_SysQuan.sky to /data/labkey/files/Panorama Public/2024/LDI-McGill University Borchers Lab - SysQuan/@files/20241104_SysQuan_2024-11-05_10-58-26/20241104_SysQuan.sky
06 Nov 2024 10:33:43,570 DEBUG: Created symlink /data/labkey/files/LDI-McGill University - Borchers Lab/SysQuan/@files/20241104_SysQuan_2024-11-05_10-58-26/20241104_SysQuan.sky targeting /data/labkey/files/Panorama Public/2024/LDI-McGill University Borchers Lab - SysQuan/@files/20241104_SysQuan_2024-11-05_10-58-26/20241104_SysQuan.sky
06 Nov 2024 10:33:43,571 DEBUG: Moved file /data/labkey/files/LDI-McGill University - Borchers Lab/SysQuan/@files/20241104_SysQuan_2024-11-05_10-58-26/Homo sapiens sapiens proteome.protdb to /data/labkey/files/Panorama Public/2024/LDI-McGill University Borchers Lab - SysQuan/@files/20241104_SysQuan_2024-11-05_10-58-26/Homo sapiens sapiens proteome.protdb
06 Nov 2024 10:33:43,573 DEBUG: Created symlink /data/labkey/files/LDI-McGill University - Borchers Lab/SysQuan/@files/20241104_SysQuan_2024-11-05_10-58-26/Homo sapiens sapiens proteome.protdb targeting /data/labkey/files/Panorama Public/2024/LDI-McGill University Borchers Lab - SysQuan/@files/20241104_SysQuan_2024-11-05_10-58-26/Homo sapiens sapiens proteome.protdb
06 Nov 2024 10:33:43,574 DEBUG: Moved file /data/labkey/files/LDI-McGill University - Borchers Lab/SysQuan/@files/20241104_SysQuan_2024-11-05_10-58-26.sky.zip to /data/labkey/files/Panorama Public/2024/LDI-McGill University Borchers Lab - SysQuan/@files/20241104_SysQuan_2024-11-05_10-58-26.sky.zip
06 Nov 2024 10:33:43,576 DEBUG: Created symlink /data/labkey/files/LDI-McGill University - Borchers Lab/SysQuan/@files/20241104_SysQuan_2024-11-05_10-58-26.sky.zip targeting /data/labkey/files/Panorama Public/2024/LDI-McGill University Borchers Lab - SysQuan/@files/20241104_SysQuan_2024-11-05_10-58-26.sky.zip
06 Nov 2024 10:33:43,576 INFO : Aligning data files urls in folder: /Panorama Public/2024/LDI-McGill University Borchers Lab - SysQuan
06 Nov 2024 10:33:43,578 DEBUG: Setting filePathRoot on copied run: 20241104_SysQuan_2024-11-05_10-58-26.sky.zip to: /data/labkey/files/Panorama Public/2024/LDI-McGill University Borchers Lab - SysQuan/@files
06 Nov 2024 10:33:43,580 DEBUG: Setting dataFileUri on copied data: 20241104_SysQuan.skyd to: /data/labkey/files/Panorama Public/2024/LDI-McGill University Borchers Lab - SysQuan/@files/20241104_SysQuan_2024-11-05_10-58-26/20241104_SysQuan.skyd
06 Nov 2024 10:33:43,584 DEBUG: Setting dataFileUri on copied data: 20241104_SysQuan_2024-11-05_10-58-26.sky.zip to: /data/labkey/files/Panorama Public/2024/LDI-McGill University Borchers Lab - SysQuan/@files/20241104_SysQuan_2024-11-05_10-58-26.sky.zip
06 Nov 2024 10:33:43,584 INFO : Importing files metadata.
06 Nov 2024 10:33:43,584 DEBUG: [/Panorama Public/2024/LDI-McGill University Borchers Lab - SysQuan]  Reading files metadata from /data/labkey/files/Panorama Public/2024/LDI-McGill University Borchers Lab - SysQuan/@files/export
06 Nov 2024 10:33:43,585 INFO : 
06 Nov 2024 10:33:43,585 INFO : Experiment import completed successfully.
06 Nov 2024 10:33:43,585 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
06 Nov 2024 10:33:43,607 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
06 Nov 2024 10:33:43,607 INFO : 
06 Nov 2024 10:33:43,607 INFO : Checking for library folders.
06 Nov 2024 10:33:43,608 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
06 Nov 2024 10:33:43,626 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
06 Nov 2024 10:33:43,626 INFO : 
06 Nov 2024 10:33:43,626 INFO : Finishing up experiment copy.
06 Nov 2024 10:33:43,627 INFO : Updating TargetedMS experiment entry in target folder /Panorama Public/2024/LDI-McGill University Borchers Lab - SysQuan
06 Nov 2024 10:33:43,628 INFO : Setting version on new experiment to 1
06 Nov 2024 10:33:43,631 INFO : Updating permanent link to point to the new copy of the data.
06 Nov 2024 10:33:43,661 INFO : Removing copy permissions given to Panorama Public
06 Nov 2024 10:33:43,666 INFO : Adding read permissions to all users that are folder admins in the source folder.
06 Nov 2024 10:33:43,667 INFO : Assigning ReaderRole to andre@proteincentre.com
06 Nov 2024 10:33:43,667 INFO : Assigning ReaderRole to vincentroyrichard@gmail.com
06 Nov 2024 10:33:43,667 INFO : Assigning PanoramaPublicSubmitterRole to vincentroyrichard@gmail.com
06 Nov 2024 10:33:43,674 INFO : User vincentroyrichard@gmail.com is already a member of group Panorama Public Submitters
06 Nov 2024 10:33:43,674 INFO : Updating the 'Raw Data' tab configuration
06 Nov 2024 10:33:43,675 INFO : Creating a reviewer account.
06 Nov 2024 10:33:43,758 INFO : Created reviewer with email: panorama+reviewer300@proteinms.net
06 Nov 2024 10:33:43,758 INFO : Generating password.
06 Nov 2024 10:33:43,887 INFO : Set reviewer password successfully.
06 Nov 2024 10:33:43,895 INFO : Adding user panorama+reviewer300@proteinms.net to group Reviewers
06 Nov 2024 10:33:43,898 INFO : Hiding the Data Pipeline tab.
06 Nov 2024 10:33:43,904 INFO : Updating Submission. Setting copiedExperimentId to 1935
06 Nov 2024 10:33:46,051 INFO : Assigning a ProteomeXchange ID.
06 Nov 2024 10:33:46,632 INFO : Assigned ProteomeXchange ID: PXD057580
06 Nov 2024 10:33:46,632 INFO : Assigning a DOI.
06 Nov 2024 10:33:47,356 INFO : Assigned DOI: 10.6069/ztyc-qj43
06 Nov 2024 10:33:47,498 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'