Copying experiment: A Novel High-Throughput Immunoaffinity LC-MS/MS Assay for P III-NP and other Fragments of Type III Procollagen in Human Serum

Hoofnagle - III Procollagen Assay Validation Paper

Job Status

Created: 2024-05-13 22:29:05
Modified: 2024-05-13 22:30:41
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Copying experiment: A Novel High-Throughput Immunoaffinity LC-MS/MS Assay for P III-NP and other Fragments of Type III Procollagen in Human Serum
File Path: /data/labkey/files/Panorama Public/2024/Hoofnagle - III Procollagen Assay Validation Paper/@files/Experiment_1903.log
Files: Experiment_1903.log
Completed Runs: 20230728_Procollagen SERUM_HoofnagleLab_Comparison_2024-05-10_11-27-33.sky.zip
20230810_Procollagen SERUM_HoofnagleLab_Affect age_2024-05-10_11-27-51.sky.zip
20230815_Procollagen SERUM_HoofnagleLab_Tasso device_2024-05-10_11-28-11.sky.zip
20220715_Procollagen Serum_HoofnagleLab_pyroT1 Ab selection_2024-05-10_11-14-46.sky.zip
20220823_Procollagen Serum_HoofnagleLab_SDC concentration_2024-05-10_11-16-13.sky.zip
20221103_Procollagen Serum_HoofnagleLab_NH4OH volume_2024-05-10_11-16-35.sky.zip
20221202_Procollagen Serum_HoofnagleLab_Plate temperature_2024-05-10_11-17-00.sky.zip
20230303_Procollagen Serum_HoofnagleLab_Analyte free matrix_2024-05-10_11-17-48.sky.zip
20221215_Procollagen Serum_HoofnagleLab_Kinetic digestion_2024-05-13_16-49-05.sky.zip
20230405_Procollagen Serum_HoofnagleLab_Plate tube precision_2024-05-10_11-28-34.sky.zip
20230712_Procollagen Serum_HoofnagleLab_Plate tube correlation_2024-05-13_17-05-23.sky.zip
20230322_Procollagen SERUM_HoofnagleLab_Precision Pool_Day 1_2024-05-10_11-19-29.sky.zip
20230327_Procollagen SERUM_HoofnagleLab_Precision Pool_Day 2_2024-05-10_11-19-48.sky.zip
20230403_Procollagen SERUM_HoofnagleLab_Precision Pool_Day 3_2024-05-10_11-20-18.sky.zip
20230405_Procollagen SERUM_HoofnagleLab_Precision Pool_Day 4_2024-05-10_11-21-06.sky.zip
20230425_Procollagen SERUM_HoofnagleLab_Precision Pool_Day 5_2024-05-10_11-21-28.sky.zip
20230525_Procollagen SERUM_HoofnagleLab_Precision Individuals_Day 1_2024-05-10_11-21-46.sky.zip
20230710_Procollagen SERUM_HoofnagleLab_Precision Individuals_Day 2_2024-05-10_11-22-06.sky.zip
20230712_Procollagen SERUM_HoofnagleLab_Precision Individuals_Day 3_2024-05-10_11-22-27.sky.zip
20230719_Procollagen SERUM_HoofnagleLab_Precision Individuals_Day 4_2024-05-10_11-22-49.sky.zip
20230720_Procollagen SERUM_HoofnagleLab_Precision Individuals_Day 5_2024-05-10_11-23-08.sky.zip
20230509_Procollagen SERUM_HoofnagleLab_Linearity_Day 1_2024-05-10_11-23-29.sky.zip
20230511_Procollagen SERUM_HoofnagleLab_Linearity_Day 2_2024-05-10_11-23-47.sky.zip
20230327_Procollagen SERUM_HoofnagleLab_Interference N1_2024-05-10_11-24-40.sky.zip
20230710_Procollagen SERUM_HoofnagleLab_Interference N2_2024-05-10_11-24-59.sky.zip
20230728_Procollagen SERUM_HoofnagleLab_Interference N3_2024-05-10_11-25-19.sky.zip
20230322_Procollagen SERUM_HoofnagleLab_Protein stability_2024-05-10_11-27-05.sky.zip
20230516_Procollagen SERUM_HoofnagleLab_Linearity_Day 3_2024-05-13_16-51-20.sky.zip
20230308_Procollagen SERUM_HoofnagleLab_Peptide stability_2024-05-13_16-58-52.sky.zip
20230308_Procollagen SERUM_HoofnagleLab_Peptide stability_2024-05-13_17-00-40.sky.zip

Log File


13 May 2024 22:29:05,892 INFO : Copying experiment "A Novel High-Throughput Immunoaffinity LC-MS/MS Assay for P III-NP and other Fragments of Type III Procollagen in Human Serum" from folder /Hoofnagle/Type III Procollagen/Type III Procollagen Serum/III Procollagen Assay Validation Paper to /Panorama Public/2024/Hoofnagle - III Procollagen Assay Validation Paper
13 May 2024 22:29:05,892 INFO : =======================================
13 May 2024 22:29:05,923 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
13 May 2024 22:29:05,923 INFO :
13 May 2024 22:29:05,923 INFO : Exporting experiment.
13 May 2024 22:29:13,447 INFO : Exporting files metadata.
13 May 2024 22:29:13,988 INFO :
13 May 2024 22:29:13,988 INFO : Experiment export completed successfully.
13 May 2024 22:29:13,988 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
13 May 2024 22:29:14,008 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
13 May 2024 22:29:14,008 INFO :
13 May 2024 22:29:14,008 INFO : Importing experiment.
13 May 2024 22:29:14,011 INFO : Loading folder properties (folder type, settings and active modules)
13 May 2024 22:29:14,076 INFO : Done importing folder properties (folder type, settings and active modules)
13 May 2024 22:29:14,077 INFO : Loading container specific module properties
13 May 2024 22:29:14,080 INFO : Done importing container specific module properties
13 May 2024 22:29:14,081 INFO : Loading queries
13 May 2024 22:29:14,084 INFO : 1 query imported
13 May 2024 22:29:14,084 INFO : Done importing queries
13 May 2024 22:29:14,085 INFO : Loading etl definitions
13 May 2024 22:29:14,086 INFO : Loading wikis
13 May 2024 22:29:14,087 INFO : 0 wikis imported
13 May 2024 22:29:14,087 INFO : Done importing wikis
13 May 2024 22:29:14,137 INFO : Starting Data Class Importer
13 May 2024 22:29:14,137 INFO : No types XAR file to process.
13 May 2024 22:29:14,137 INFO : Finished Data Class Importer
13 May 2024 22:29:14,138 INFO : Starting to copy files
13 May 2024 22:29:14,138 INFO : Copied 0 files
13 May 2024 22:29:14,138 INFO : Ensuring exp.data rows exist for imported files
13 May 2024 22:29:14,410 INFO : Starting Sample Type Importer
13 May 2024 22:29:14,411 INFO : No types XAR file to process.
13 May 2024 22:29:14,411 INFO : Finished Sample Type Importer
13 May 2024 22:29:14,412 INFO : Loading xar
13 May 2024 22:29:14,418 INFO : Done importing xar
13 May 2024 22:29:14,419 INFO : Loading pages and webpart properties
13 May 2024 22:29:14,500 INFO : Done importing 4 page(s) with 5 webpart(s)
13 May 2024 22:29:14,500 INFO : Loading File Browser config
13 May 2024 22:29:14,500 INFO : Done importing File Browser config
13 May 2024 22:29:14,501 INFO : Starting Sample Status Data import
13 May 2024 22:29:14,501 INFO : No sample types XAR file to process.
13 May 2024 22:29:14,501 INFO : Finished importing Sample Status Data
13 May 2024 22:29:14,505 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
13 May 2024 22:29:14,507 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
13 May 2024 22:29:14,508 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
13 May 2024 22:29:14,508 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
13 May 2024 22:29:14,509 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
13 May 2024 22:29:14,509 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
13 May 2024 22:29:14,510 INFO : Loading subfolders and container tabs
13 May 2024 22:29:14,569 INFO : New folder created with inherited permissions: /Panorama Public/2024/Hoofnagle - III Procollagen Assay Validation Paper/01_Method development
13 May 2024 22:29:14,569 INFO : Loading folder archive for 01_Method development
13 May 2024 22:29:14,570 INFO : Loading folder properties (folder type, settings and active modules)
13 May 2024 22:29:14,630 INFO : Done importing folder properties (folder type, settings and active modules)
13 May 2024 22:29:14,632 INFO : Loading container specific module properties
13 May 2024 22:29:14,636 INFO : Done importing container specific module properties
13 May 2024 22:29:14,637 INFO : Loading queries
13 May 2024 22:29:14,641 INFO : 1 query imported
13 May 2024 22:29:14,641 INFO : Done importing queries
13 May 2024 22:29:14,642 INFO : Loading etl definitions
13 May 2024 22:29:14,643 INFO : Loading wikis
13 May 2024 22:29:14,644 INFO : 0 wikis imported
13 May 2024 22:29:14,644 INFO : Done importing wikis
13 May 2024 22:29:14,645 INFO : Starting Data Class Importer
13 May 2024 22:29:14,645 INFO : No types XAR file to process.
13 May 2024 22:29:14,645 INFO : Finished Data Class Importer
13 May 2024 22:29:14,646 INFO : Starting to copy files
13 May 2024 22:29:14,646 INFO : Copied 0 files
13 May 2024 22:29:14,646 INFO : Ensuring exp.data rows exist for imported files
13 May 2024 22:29:14,651 INFO : Starting Sample Type Importer
13 May 2024 22:29:14,651 INFO : No types XAR file to process.
13 May 2024 22:29:14,651 INFO : Finished Sample Type Importer
13 May 2024 22:29:14,652 INFO : Loading xar
13 May 2024 22:29:14,996 INFO : Starting import from 20220715_Procollagen Serum_HoofnagleLab_pyroT1 Ab selection_2024-05-10_11-14-46.sky.zip
13 May 2024 22:29:14,999 INFO : Starting to import Skyline document from 20220715_Procollagen Serum_HoofnagleLab_pyroT1 Ab selection_2024-05-10_11-14-46.sky.zip
13 May 2024 22:29:15,000 INFO : Expanding 20220715_Procollagen Serum_HoofnagleLab_pyroT1 Ab selection.skyd
13 May 2024 22:29:15,031 INFO : Expanding 20220715_Procollagen Serum_HoofnagleLab_pyroT1 Ab selection.sky.view
13 May 2024 22:29:15,032 INFO : Expanding 20220715_Procollagen Serum_HoofnagleLab_pyroT1 Ab selection.sky
13 May 2024 22:29:15,039 INFO : 4% Done
13 May 2024 22:29:15,809 INFO : Inserting P3CP
13 May 2024 22:29:15,830 INFO : 29% Done
13 May 2024 22:29:15,928 INFO : 50% Done
13 May 2024 22:29:16,012 INFO : 74% Done
13 May 2024 22:29:16,101 INFO : Inserting P3NP
13 May 2024 22:29:16,115 INFO : 98% Done
13 May 2024 22:29:16,204 INFO : Done parsing Skyline document.
13 May 2024 22:29:16,205 INFO : Creating and populating temp tables for Proportion values
13 May 2024 22:29:16,210 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
13 May 2024 22:29:16,234 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
13 May 2024 22:29:16,239 INFO : Cleaning up temp tables
13 May 2024 22:29:16,612 INFO : Completed import of Skyline document from 20220715_Procollagen Serum_HoofnagleLab_pyroT1 Ab selection_2024-05-10_11-14-46.sky.zip
13 May 2024 22:29:16,614 INFO : 100% Done
13 May 2024 22:29:16,620 INFO : Starting import from 20220823_Procollagen Serum_HoofnagleLab_SDC concentration_2024-05-10_11-16-13.sky.zip
13 May 2024 22:29:16,622 INFO : Starting to import Skyline document from 20220823_Procollagen Serum_HoofnagleLab_SDC concentration_2024-05-10_11-16-13.sky.zip
13 May 2024 22:29:16,622 INFO : Expanding 20220823_Procollagen Serum_HoofnagleLab_SDC concentration.skyd
13 May 2024 22:29:16,640 INFO : Expanding 20220823_Procollagen Serum_HoofnagleLab_SDC concentration.sky.view
13 May 2024 22:29:16,641 INFO : Expanding 20220823_Procollagen Serum_HoofnagleLab_SDC concentration.sky
13 May 2024 22:29:16,650 INFO : 2% Done
13 May 2024 22:29:17,455 INFO : Inserting P3CP
13 May 2024 22:29:17,475 INFO : 26% Done
13 May 2024 22:29:17,565 INFO : 51% Done
13 May 2024 22:29:17,656 INFO : 74% Done
13 May 2024 22:29:17,741 INFO : 98% Done
13 May 2024 22:29:17,819 INFO : Done parsing Skyline document.
13 May 2024 22:29:17,820 INFO : Creating and populating temp tables for Proportion values
13 May 2024 22:29:17,825 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
13 May 2024 22:29:17,831 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
13 May 2024 22:29:17,834 INFO : Cleaning up temp tables
13 May 2024 22:29:18,134 INFO : Completed import of Skyline document from 20220823_Procollagen Serum_HoofnagleLab_SDC concentration_2024-05-10_11-16-13.sky.zip
13 May 2024 22:29:18,136 INFO : 100% Done
13 May 2024 22:29:18,142 INFO : Starting import from 20221103_Procollagen Serum_HoofnagleLab_NH4OH volume_2024-05-10_11-16-35.sky.zip
13 May 2024 22:29:18,143 INFO : Starting to import Skyline document from 20221103_Procollagen Serum_HoofnagleLab_NH4OH volume_2024-05-10_11-16-35.sky.zip
13 May 2024 22:29:18,144 INFO : Expanding 20221103_Procollagen Serum_HoofnagleLab_NH4OH volume.skyd
13 May 2024 22:29:18,151 INFO : Expanding 20221103_Procollagen Serum_HoofnagleLab_NH4OH volume.sky.view
13 May 2024 22:29:18,151 INFO : Expanding 20221103_Procollagen Serum_HoofnagleLab_NH4OH volume.sky
13 May 2024 22:29:18,159 INFO : 2% Done
13 May 2024 22:29:19,074 INFO : Inserting P3CP
13 May 2024 22:29:19,087 INFO : 14% Done
13 May 2024 22:29:19,145 INFO : 33% Done
13 May 2024 22:29:19,219 INFO : 47% Done
13 May 2024 22:29:19,280 INFO : 65% Done
13 May 2024 22:29:19,350 INFO : 83% Done
13 May 2024 22:29:19,416 INFO : 94% Done
13 May 2024 22:29:19,459 INFO : Inserting quality control
13 May 2024 22:29:19,462 INFO : 98% Done
13 May 2024 22:29:19,475 INFO : Done parsing Skyline document.
13 May 2024 22:29:19,475 INFO : Creating and populating temp tables for Proportion values
13 May 2024 22:29:19,480 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
13 May 2024 22:29:19,490 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
13 May 2024 22:29:19,493 INFO : Cleaning up temp tables
13 May 2024 22:29:19,793 INFO : Completed import of Skyline document from 20221103_Procollagen Serum_HoofnagleLab_NH4OH volume_2024-05-10_11-16-35.sky.zip
13 May 2024 22:29:19,795 INFO : 100% Done
13 May 2024 22:29:19,800 INFO : Starting import from 20221202_Procollagen Serum_HoofnagleLab_Plate temperature_2024-05-10_11-17-00.sky.zip
13 May 2024 22:29:19,801 INFO : Starting to import Skyline document from 20221202_Procollagen Serum_HoofnagleLab_Plate temperature_2024-05-10_11-17-00.sky.zip
13 May 2024 22:29:19,803 INFO : Expanding 20221202_Procollagen Serum_HoofnagleLab_Plate temperature.skyd
13 May 2024 22:29:19,812 INFO : Expanding 20221202_Procollagen Serum_HoofnagleLab_Plate temperature.sky.view
13 May 2024 22:29:19,813 INFO : Expanding 20221202_Procollagen Serum_HoofnagleLab_Plate temperature.sky
13 May 2024 22:29:19,819 INFO : 4% Done
13 May 2024 22:29:20,884 INFO : Inserting P3CP
13 May 2024 22:29:20,898 INFO : 24% Done
13 May 2024 22:29:20,949 INFO : 35% Done
13 May 2024 22:29:20,990 INFO : 65% Done
13 May 2024 22:29:21,062 INFO : 98% Done
13 May 2024 22:29:21,134 INFO : Done parsing Skyline document.
13 May 2024 22:29:21,135 INFO : Creating and populating temp tables for Proportion values
13 May 2024 22:29:21,140 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
13 May 2024 22:29:21,146 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
13 May 2024 22:29:21,149 INFO : Cleaning up temp tables
13 May 2024 22:29:21,429 INFO : Completed import of Skyline document from 20221202_Procollagen Serum_HoofnagleLab_Plate temperature_2024-05-10_11-17-00.sky.zip
13 May 2024 22:29:21,431 INFO : 100% Done
13 May 2024 22:29:21,436 INFO : Starting import from 20230303_Procollagen Serum_HoofnagleLab_Analyte free matrix_2024-05-10_11-17-48.sky.zip
13 May 2024 22:29:21,437 INFO : Starting to import Skyline document from 20230303_Procollagen Serum_HoofnagleLab_Analyte free matrix_2024-05-10_11-17-48.sky.zip
13 May 2024 22:29:21,438 INFO : Expanding 20230303_Procollagen Serum_HoofnagleLab_Analyte free matrix.skyd
13 May 2024 22:29:21,463 INFO : Expanding 20230303_Procollagen Serum_HoofnagleLab_Analyte free matrix.sky.view
13 May 2024 22:29:21,464 INFO : Expanding 20230303_Procollagen Serum_HoofnagleLab_Analyte free matrix.sky
13 May 2024 22:29:21,472 INFO : 4% Done
13 May 2024 22:29:22,760 INFO : Inserting P3CP
13 May 2024 22:29:22,784 INFO : 31% Done
13 May 2024 22:29:22,899 INFO : 49% Done
13 May 2024 22:29:22,991 INFO : 75% Done
13 May 2024 22:29:23,105 INFO : 98% Done
13 May 2024 22:29:23,192 INFO : Done parsing Skyline document.
13 May 2024 22:29:23,193 INFO : Creating and populating temp tables for Proportion values
13 May 2024 22:29:23,198 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
13 May 2024 22:29:23,212 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
13 May 2024 22:29:23,216 INFO : Cleaning up temp tables
13 May 2024 22:29:23,505 INFO : Completed import of Skyline document from 20230303_Procollagen Serum_HoofnagleLab_Analyte free matrix_2024-05-10_11-17-48.sky.zip
13 May 2024 22:29:23,507 INFO : 100% Done
13 May 2024 22:29:23,512 INFO : Starting import from 20221215_Procollagen Serum_HoofnagleLab_Kinetic digestion_2024-05-13_16-49-05.sky.zip
13 May 2024 22:29:23,514 INFO : Starting to import Skyline document from 20221215_Procollagen Serum_HoofnagleLab_Kinetic digestion_2024-05-13_16-49-05.sky.zip
13 May 2024 22:29:23,515 INFO : Expanding 20221215_Procollagen Serum_HoofnagleLab_Kinetic digestion.skyd
13 May 2024 22:29:23,544 INFO : Expanding 20221215_Procollagen Serum_HoofnagleLab_Kinetic digestion.sky.view
13 May 2024 22:29:23,544 INFO : Expanding 20221215_Procollagen Serum_HoofnagleLab_Kinetic digestion.sky
13 May 2024 22:29:23,549 WARN : The version of this Skyline document is 23.12. This is newer than the highest supported version 23.1
13 May 2024 22:29:23,553 INFO : 3% Done
13 May 2024 22:29:24,967 INFO : Inserting P3CP
13 May 2024 22:29:24,986 INFO : 23% Done
13 May 2024 22:29:25,078 INFO : 34% Done
13 May 2024 22:29:25,155 INFO : 64% Done
13 May 2024 22:29:25,290 INFO : 98% Done
13 May 2024 22:29:25,427 INFO : Done parsing Skyline document.
13 May 2024 22:29:25,428 INFO : Creating and populating temp tables for Proportion values
13 May 2024 22:29:25,432 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
13 May 2024 22:29:25,446 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
13 May 2024 22:29:25,452 INFO : Cleaning up temp tables
13 May 2024 22:29:25,730 INFO : Completed import of Skyline document from 20221215_Procollagen Serum_HoofnagleLab_Kinetic digestion_2024-05-13_16-49-05.sky.zip
13 May 2024 22:29:25,732 INFO : 100% Done
13 May 2024 22:29:25,749 INFO : Done importing xar
13 May 2024 22:29:25,750 INFO : Loading pages and webpart properties
13 May 2024 22:29:25,816 INFO : Done importing 3 page(s) with 4 webpart(s)
13 May 2024 22:29:25,816 INFO : Loading File Browser config
13 May 2024 22:29:25,816 INFO : Done importing File Browser config
13 May 2024 22:29:25,817 INFO : Starting Sample Status Data import
13 May 2024 22:29:25,817 INFO : No sample types XAR file to process.
13 May 2024 22:29:25,817 INFO : Finished importing Sample Status Data
13 May 2024 22:29:25,821 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
13 May 2024 22:29:25,823 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
13 May 2024 22:29:25,823 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
13 May 2024 22:29:25,824 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
13 May 2024 22:29:25,824 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
13 May 2024 22:29:25,824 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
13 May 2024 22:29:25,826 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
13 May 2024 22:29:25,829 INFO : Adding runs imported in subfolders.
13 May 2024 22:29:25,841 INFO : Moving files to folder /Panorama Public/2024/Hoofnagle - III Procollagen Assay Validation Paper/01_Method development and creating symlinks
13 May 2024 22:29:34,629 INFO : Aligning data files urls in folder: /Panorama Public/2024/Hoofnagle - III Procollagen Assay Validation Paper/01_Method development
13 May 2024 22:29:34,657 INFO : Done importing folder archive for 01_Method development
13 May 2024 22:29:34,717 INFO : New folder created with inherited permissions: /Panorama Public/2024/Hoofnagle - III Procollagen Assay Validation Paper/02_Assay validation
13 May 2024 22:29:34,717 INFO : Loading folder archive for 02_Assay validation
13 May 2024 22:29:34,718 INFO : Loading folder properties (folder type, settings and active modules)
13 May 2024 22:29:34,780 INFO : Done importing folder properties (folder type, settings and active modules)
13 May 2024 22:29:34,781 INFO : Loading container specific module properties
13 May 2024 22:29:34,784 INFO : Done importing container specific module properties
13 May 2024 22:29:34,785 INFO : Loading queries
13 May 2024 22:29:34,789 INFO : 1 query imported
13 May 2024 22:29:34,789 INFO : Done importing queries
13 May 2024 22:29:34,790 INFO : Loading etl definitions
13 May 2024 22:29:34,792 INFO : Loading wikis
13 May 2024 22:29:34,793 INFO : 0 wikis imported
13 May 2024 22:29:34,793 INFO : Done importing wikis
13 May 2024 22:29:34,795 INFO : Starting Data Class Importer
13 May 2024 22:29:34,795 INFO : No types XAR file to process.
13 May 2024 22:29:34,795 INFO : Finished Data Class Importer
13 May 2024 22:29:34,796 INFO : Starting to copy files
13 May 2024 22:29:34,796 INFO : Copied 0 files
13 May 2024 22:29:34,796 INFO : Ensuring exp.data rows exist for imported files
13 May 2024 22:29:34,800 INFO : Starting Sample Type Importer
13 May 2024 22:29:34,800 INFO : No types XAR file to process.
13 May 2024 22:29:34,800 INFO : Finished Sample Type Importer
13 May 2024 22:29:34,801 INFO : Loading xar
13 May 2024 22:29:35,544 INFO : Starting import from 20230322_Procollagen SERUM_HoofnagleLab_Precision Pool_Day 1_2024-05-10_11-19-29.sky.zip
13 May 2024 22:29:35,547 INFO : Starting to import Skyline document from 20230322_Procollagen SERUM_HoofnagleLab_Precision Pool_Day 1_2024-05-10_11-19-29.sky.zip
13 May 2024 22:29:35,548 INFO : Expanding 20230322_Procollagen SERUM_HoofnagleLab_Precision Pool_Day 1.skyd
13 May 2024 22:29:35,559 INFO : Expanding 20230322_Procollagen SERUM_HoofnagleLab_Precision Pool_Day 1.sky.view
13 May 2024 22:29:35,559 INFO : Expanding 20230322_Procollagen SERUM_HoofnagleLab_Precision Pool_Day 1.sky
13 May 2024 22:29:35,570 INFO : 4% Done
13 May 2024 22:29:36,243 INFO : Inserting P3CP
13 May 2024 22:29:36,257 INFO : 30% Done
13 May 2024 22:29:36,310 INFO : 47% Done
13 May 2024 22:29:36,350 INFO : 74% Done
13 May 2024 22:29:36,402 INFO : 98% Done
13 May 2024 22:29:36,449 INFO : Done parsing Skyline document.
13 May 2024 22:29:36,449 INFO : Creating and populating temp tables for Proportion values
13 May 2024 22:29:36,454 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
13 May 2024 22:29:36,461 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
13 May 2024 22:29:36,464 INFO : Cleaning up temp tables
13 May 2024 22:29:36,757 INFO : Completed import of Skyline document from 20230322_Procollagen SERUM_HoofnagleLab_Precision Pool_Day 1_2024-05-10_11-19-29.sky.zip
13 May 2024 22:29:36,759 INFO : 100% Done
13 May 2024 22:29:36,768 INFO : Starting import from 20230327_Procollagen SERUM_HoofnagleLab_Precision Pool_Day 2_2024-05-10_11-19-48.sky.zip
13 May 2024 22:29:36,770 INFO : Starting to import Skyline document from 20230327_Procollagen SERUM_HoofnagleLab_Precision Pool_Day 2_2024-05-10_11-19-48.sky.zip
13 May 2024 22:29:36,770 INFO : Expanding 20230327_Procollagen SERUM_HoofnagleLab_Precision Pool_Day 2.skyd
13 May 2024 22:29:36,782 INFO : Expanding 20230327_Procollagen SERUM_HoofnagleLab_Precision Pool_Day 2.sky.view
13 May 2024 22:29:36,784 INFO : Expanding 20230327_Procollagen SERUM_HoofnagleLab_Precision Pool_Day 2.sky
13 May 2024 22:29:36,791 INFO : 4% Done
13 May 2024 22:29:37,608 INFO : Inserting P3CP
13 May 2024 22:29:37,621 INFO : 30% Done
13 May 2024 22:29:37,677 INFO : 47% Done
13 May 2024 22:29:37,720 INFO : 73% Done
13 May 2024 22:29:37,773 INFO : 98% Done
13 May 2024 22:29:37,821 INFO : Done parsing Skyline document.
13 May 2024 22:29:37,822 INFO : Creating and populating temp tables for Proportion values
13 May 2024 22:29:37,827 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
13 May 2024 22:29:37,834 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
13 May 2024 22:29:37,837 INFO : Cleaning up temp tables
13 May 2024 22:29:38,120 INFO : Completed import of Skyline document from 20230327_Procollagen SERUM_HoofnagleLab_Precision Pool_Day 2_2024-05-10_11-19-48.sky.zip
13 May 2024 22:29:38,122 INFO : 100% Done
13 May 2024 22:29:38,131 INFO : Starting import from 20230403_Procollagen SERUM_HoofnagleLab_Precision Pool_Day 3_2024-05-10_11-20-18.sky.zip
13 May 2024 22:29:38,133 INFO : Starting to import Skyline document from 20230403_Procollagen SERUM_HoofnagleLab_Precision Pool_Day 3_2024-05-10_11-20-18.sky.zip
13 May 2024 22:29:38,135 INFO : Expanding 20230403_Procollagen SERUM_HoofnagleLab_Precision Pool_Day 3.skyd
13 May 2024 22:29:38,145 INFO : Expanding 20230403_Procollagen SERUM_HoofnagleLab_Precision Pool_Day 3.sky.view
13 May 2024 22:29:38,146 INFO : Expanding 20230403_Procollagen SERUM_HoofnagleLab_Precision Pool_Day 3.sky
13 May 2024 22:29:38,151 INFO : 4% Done
13 May 2024 22:29:39,104 INFO : Inserting P3CP
13 May 2024 22:29:39,116 INFO : 30% Done
13 May 2024 22:29:39,170 INFO : 47% Done
13 May 2024 22:29:39,210 INFO : 74% Done
13 May 2024 22:29:39,263 INFO : 98% Done
13 May 2024 22:29:39,310 INFO : Done parsing Skyline document.
13 May 2024 22:29:39,311 INFO : Creating and populating temp tables for Proportion values
13 May 2024 22:29:39,316 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
13 May 2024 22:29:39,323 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
13 May 2024 22:29:39,325 INFO : Cleaning up temp tables
13 May 2024 22:29:39,604 INFO : Completed import of Skyline document from 20230403_Procollagen SERUM_HoofnagleLab_Precision Pool_Day 3_2024-05-10_11-20-18.sky.zip
13 May 2024 22:29:39,606 INFO : 100% Done
13 May 2024 22:29:39,614 INFO : Starting import from 20230405_Procollagen SERUM_HoofnagleLab_Precision Pool_Day 4_2024-05-10_11-21-06.sky.zip
13 May 2024 22:29:39,616 INFO : Starting to import Skyline document from 20230405_Procollagen SERUM_HoofnagleLab_Precision Pool_Day 4_2024-05-10_11-21-06.sky.zip
13 May 2024 22:29:39,616 INFO : Expanding 20230405_Procollagen SERUM_HoofnagleLab_Precision Pool_Day 4.skyd
13 May 2024 22:29:39,629 INFO : Expanding 20230405_Procollagen SERUM_HoofnagleLab_Precision Pool_Day 4.sky.view
13 May 2024 22:29:39,629 INFO : Expanding 20230405_Procollagen SERUM_HoofnagleLab_Precision Pool_Day 4.sky
13 May 2024 22:29:39,669 INFO : 4% Done
13 May 2024 22:29:40,749 INFO : Inserting P3CP
13 May 2024 22:29:40,762 INFO : 30% Done
13 May 2024 22:29:40,816 INFO : 47% Done
13 May 2024 22:29:40,856 INFO : 73% Done
13 May 2024 22:29:40,909 INFO : 98% Done
13 May 2024 22:29:40,957 INFO : Done parsing Skyline document.
13 May 2024 22:29:40,957 INFO : Creating and populating temp tables for Proportion values
13 May 2024 22:29:40,962 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
13 May 2024 22:29:40,969 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
13 May 2024 22:29:40,972 INFO : Cleaning up temp tables
13 May 2024 22:29:41,295 INFO : Completed import of Skyline document from 20230405_Procollagen SERUM_HoofnagleLab_Precision Pool_Day 4_2024-05-10_11-21-06.sky.zip
13 May 2024 22:29:41,297 INFO : 100% Done
13 May 2024 22:29:41,306 INFO : Starting import from 20230425_Procollagen SERUM_HoofnagleLab_Precision Pool_Day 5_2024-05-10_11-21-28.sky.zip
13 May 2024 22:29:41,307 INFO : Starting to import Skyline document from 20230425_Procollagen SERUM_HoofnagleLab_Precision Pool_Day 5_2024-05-10_11-21-28.sky.zip
13 May 2024 22:29:41,308 INFO : Expanding 20230425_Procollagen SERUM_HoofnagleLab_Precision Pool_Day 5.skyd
13 May 2024 22:29:41,318 INFO : Expanding 20230425_Procollagen SERUM_HoofnagleLab_Precision Pool_Day 5.sky.view
13 May 2024 22:29:41,319 INFO : Expanding 20230425_Procollagen SERUM_HoofnagleLab_Precision Pool_Day 5.sky
13 May 2024 22:29:41,325 INFO : 4% Done
13 May 2024 22:29:42,540 INFO : Inserting P3CP
13 May 2024 22:29:42,552 INFO : 30% Done
13 May 2024 22:29:42,606 INFO : 48% Done
13 May 2024 22:29:42,646 INFO : 73% Done
13 May 2024 22:29:42,698 INFO : 98% Done
13 May 2024 22:29:42,745 INFO : Done parsing Skyline document.
13 May 2024 22:29:42,746 INFO : Creating and populating temp tables for Proportion values
13 May 2024 22:29:42,751 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
13 May 2024 22:29:42,758 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
13 May 2024 22:29:42,760 INFO : Cleaning up temp tables
13 May 2024 22:29:43,038 INFO : Completed import of Skyline document from 20230425_Procollagen SERUM_HoofnagleLab_Precision Pool_Day 5_2024-05-10_11-21-28.sky.zip
13 May 2024 22:29:43,040 INFO : 100% Done
13 May 2024 22:29:43,048 INFO : Starting import from 20230525_Procollagen SERUM_HoofnagleLab_Precision Individuals_Day 1_2024-05-10_11-21-46.sky.zip
13 May 2024 22:29:43,050 INFO : Starting to import Skyline document from 20230525_Procollagen SERUM_HoofnagleLab_Precision Individuals_Day 1_2024-05-10_11-21-46.sky.zip
13 May 2024 22:29:43,051 INFO : Expanding 20230525_Procollagen SERUM_HoofnagleLab_Precision Individuals_Day 1.skyd
13 May 2024 22:29:43,060 INFO : Expanding 20230525_Procollagen SERUM_HoofnagleLab_Precision Individuals_Day 1.sky.view
13 May 2024 22:29:43,061 INFO : Expanding 20230525_Procollagen SERUM_HoofnagleLab_Precision Individuals_Day 1.sky
13 May 2024 22:29:43,069 INFO : 4% Done
13 May 2024 22:29:44,382 INFO : Inserting P3CP
13 May 2024 22:29:44,395 INFO : 30% Done
13 May 2024 22:29:44,446 INFO : 47% Done
13 May 2024 22:29:44,485 INFO : 73% Done
13 May 2024 22:29:44,535 INFO : 98% Done
13 May 2024 22:29:44,579 INFO : Done parsing Skyline document.
13 May 2024 22:29:44,580 INFO : Creating and populating temp tables for Proportion values
13 May 2024 22:29:44,585 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
13 May 2024 22:29:44,591 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
13 May 2024 22:29:44,594 INFO : Cleaning up temp tables
13 May 2024 22:29:44,907 INFO : Completed import of Skyline document from 20230525_Procollagen SERUM_HoofnagleLab_Precision Individuals_Day 1_2024-05-10_11-21-46.sky.zip
13 May 2024 22:29:44,909 INFO : 100% Done
13 May 2024 22:29:44,918 INFO : Starting import from 20230710_Procollagen SERUM_HoofnagleLab_Precision Individuals_Day 2_2024-05-10_11-22-06.sky.zip
13 May 2024 22:29:44,920 INFO : Starting to import Skyline document from 20230710_Procollagen SERUM_HoofnagleLab_Precision Individuals_Day 2_2024-05-10_11-22-06.sky.zip
13 May 2024 22:29:44,921 INFO : Expanding 20230710_Procollagen SERUM_HoofnagleLab_Precision Individuals_Day 2.skyd
13 May 2024 22:29:44,930 INFO : Expanding 20230710_Procollagen SERUM_HoofnagleLab_Precision Individuals_Day 2.sky.view
13 May 2024 22:29:44,930 INFO : Expanding 20230710_Procollagen SERUM_HoofnagleLab_Precision Individuals_Day 2.sky
13 May 2024 22:29:44,937 INFO : 5% Done
13 May 2024 22:29:46,393 INFO : Inserting P3CP
13 May 2024 22:29:46,405 INFO : 30% Done
13 May 2024 22:29:46,453 INFO : 47% Done
13 May 2024 22:29:46,489 INFO : 74% Done
13 May 2024 22:29:46,537 INFO : 98% Done
13 May 2024 22:29:46,582 INFO : Done parsing Skyline document.
13 May 2024 22:29:46,583 INFO : Creating and populating temp tables for Proportion values
13 May 2024 22:29:46,588 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
13 May 2024 22:29:46,594 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
13 May 2024 22:29:46,596 INFO : Cleaning up temp tables
13 May 2024 22:29:46,894 INFO : Completed import of Skyline document from 20230710_Procollagen SERUM_HoofnagleLab_Precision Individuals_Day 2_2024-05-10_11-22-06.sky.zip
13 May 2024 22:29:46,896 INFO : 100% Done
13 May 2024 22:29:46,905 INFO : Starting import from 20230712_Procollagen SERUM_HoofnagleLab_Precision Individuals_Day 3_2024-05-10_11-22-27.sky.zip
13 May 2024 22:29:46,906 INFO : Starting to import Skyline document from 20230712_Procollagen SERUM_HoofnagleLab_Precision Individuals_Day 3_2024-05-10_11-22-27.sky.zip
13 May 2024 22:29:46,907 INFO : Expanding 20230712_Procollagen SERUM_HoofnagleLab_Precision Individuals_Day 3.skyd
13 May 2024 22:29:46,916 INFO : Expanding 20230712_Procollagen SERUM_HoofnagleLab_Precision Individuals_Day 3.sky.view
13 May 2024 22:29:46,917 INFO : Expanding 20230712_Procollagen SERUM_HoofnagleLab_Precision Individuals_Day 3.sky
13 May 2024 22:29:46,924 INFO : 5% Done
13 May 2024 22:29:48,535 INFO : Inserting P3CP
13 May 2024 22:29:48,546 INFO : 32% Done
13 May 2024 22:29:48,594 INFO : 50% Done
13 May 2024 22:29:48,630 INFO : 75% Done
13 May 2024 22:29:48,676 INFO : 98% Done
13 May 2024 22:29:48,714 INFO : Done parsing Skyline document.
13 May 2024 22:29:48,714 INFO : Creating and populating temp tables for Proportion values
13 May 2024 22:29:48,719 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
13 May 2024 22:29:48,725 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
13 May 2024 22:29:48,727 INFO : Cleaning up temp tables
13 May 2024 22:29:49,035 INFO : Completed import of Skyline document from 20230712_Procollagen SERUM_HoofnagleLab_Precision Individuals_Day 3_2024-05-10_11-22-27.sky.zip
13 May 2024 22:29:49,037 INFO : 100% Done
13 May 2024 22:29:49,045 INFO : Starting import from 20230719_Procollagen SERUM_HoofnagleLab_Precision Individuals_Day 4_2024-05-10_11-22-49.sky.zip
13 May 2024 22:29:49,047 INFO : Starting to import Skyline document from 20230719_Procollagen SERUM_HoofnagleLab_Precision Individuals_Day 4_2024-05-10_11-22-49.sky.zip
13 May 2024 22:29:49,049 INFO : Expanding 20230719_Procollagen SERUM_HoofnagleLab_Precision Individuals_Day 4.skyd
13 May 2024 22:29:49,058 INFO : Expanding 20230719_Procollagen SERUM_HoofnagleLab_Precision Individuals_Day 4.sky.view
13 May 2024 22:29:49,059 INFO : Expanding 20230719_Procollagen SERUM_HoofnagleLab_Precision Individuals_Day 4.sky
13 May 2024 22:29:49,066 INFO : 5% Done
13 May 2024 22:29:50,799 INFO : Inserting P3CP
13 May 2024 22:29:50,811 INFO : 32% Done
13 May 2024 22:29:50,859 INFO : 50% Done
13 May 2024 22:29:50,894 INFO : 77% Done
13 May 2024 22:29:50,939 INFO : 98% Done
13 May 2024 22:29:50,975 INFO : Done parsing Skyline document.
13 May 2024 22:29:50,976 INFO : Creating and populating temp tables for Proportion values
13 May 2024 22:29:50,983 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
13 May 2024 22:29:50,989 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
13 May 2024 22:29:50,991 INFO : Cleaning up temp tables
13 May 2024 22:29:51,293 INFO : Completed import of Skyline document from 20230719_Procollagen SERUM_HoofnagleLab_Precision Individuals_Day 4_2024-05-10_11-22-49.sky.zip
13 May 2024 22:29:51,295 INFO : 100% Done
13 May 2024 22:29:51,304 INFO : Starting import from 20230720_Procollagen SERUM_HoofnagleLab_Precision Individuals_Day 5_2024-05-10_11-23-08.sky.zip
13 May 2024 22:29:51,305 INFO : Starting to import Skyline document from 20230720_Procollagen SERUM_HoofnagleLab_Precision Individuals_Day 5_2024-05-10_11-23-08.sky.zip
13 May 2024 22:29:51,306 INFO : Expanding 20230720_Procollagen SERUM_HoofnagleLab_Precision Individuals_Day 5.skyd
13 May 2024 22:29:51,316 INFO : Expanding 20230720_Procollagen SERUM_HoofnagleLab_Precision Individuals_Day 5.sky.view
13 May 2024 22:29:51,317 INFO : Expanding 20230720_Procollagen SERUM_HoofnagleLab_Precision Individuals_Day 5.sky
13 May 2024 22:29:51,323 INFO : 5% Done
13 May 2024 22:29:53,224 INFO : Inserting P3CP
13 May 2024 22:29:53,235 INFO : 31% Done
13 May 2024 22:29:53,284 INFO : 50% Done
13 May 2024 22:29:53,318 INFO : 75% Done
13 May 2024 22:29:53,363 INFO : 98% Done
13 May 2024 22:29:53,398 INFO : Done parsing Skyline document.
13 May 2024 22:29:53,399 INFO : Creating and populating temp tables for Proportion values
13 May 2024 22:29:53,404 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
13 May 2024 22:29:53,410 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
13 May 2024 22:29:53,412 INFO : Cleaning up temp tables
13 May 2024 22:29:53,726 INFO : Completed import of Skyline document from 20230720_Procollagen SERUM_HoofnagleLab_Precision Individuals_Day 5_2024-05-10_11-23-08.sky.zip
13 May 2024 22:29:53,728 INFO : 100% Done
13 May 2024 22:29:53,737 INFO : Starting import from 20230509_Procollagen SERUM_HoofnagleLab_Linearity_Day 1_2024-05-10_11-23-29.sky.zip
13 May 2024 22:29:53,738 INFO : Starting to import Skyline document from 20230509_Procollagen SERUM_HoofnagleLab_Linearity_Day 1_2024-05-10_11-23-29.sky.zip
13 May 2024 22:29:53,739 INFO : Expanding 20230509_Procollagen SERUM_HoofnagleLab_Linearity_Day 1.skyd
13 May 2024 22:29:53,753 INFO : Expanding 20230509_Procollagen SERUM_HoofnagleLab_Linearity_Day 1.sky.view
13 May 2024 22:29:53,754 INFO : Expanding 20230509_Procollagen SERUM_HoofnagleLab_Linearity_Day 1.sky
13 May 2024 22:29:53,762 INFO : 4% Done
13 May 2024 22:29:55,792 INFO : Inserting P3CP
13 May 2024 22:29:55,810 INFO : 30% Done
13 May 2024 22:29:55,891 INFO : 47% Done
13 May 2024 22:29:55,952 INFO : 73% Done
13 May 2024 22:29:56,033 INFO : 98% Done
13 May 2024 22:29:56,105 INFO : Done parsing Skyline document.
13 May 2024 22:29:56,106 INFO : Creating and populating temp tables for Proportion values
13 May 2024 22:29:56,111 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
13 May 2024 22:29:56,122 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
13 May 2024 22:29:56,126 INFO : Cleaning up temp tables
13 May 2024 22:29:56,447 INFO : Completed import of Skyline document from 20230509_Procollagen SERUM_HoofnagleLab_Linearity_Day 1_2024-05-10_11-23-29.sky.zip
13 May 2024 22:29:56,450 INFO : 100% Done
13 May 2024 22:29:56,458 INFO : Starting import from 20230511_Procollagen SERUM_HoofnagleLab_Linearity_Day 2_2024-05-10_11-23-47.sky.zip
13 May 2024 22:29:56,460 INFO : Starting to import Skyline document from 20230511_Procollagen SERUM_HoofnagleLab_Linearity_Day 2_2024-05-10_11-23-47.sky.zip
13 May 2024 22:29:56,460 INFO : Expanding 20230511_Procollagen SERUM_HoofnagleLab_Linearity_Day 2.skyd
13 May 2024 22:29:56,477 INFO : Expanding 20230511_Procollagen SERUM_HoofnagleLab_Linearity_Day 2.sky.view
13 May 2024 22:29:56,477 INFO : Expanding 20230511_Procollagen SERUM_HoofnagleLab_Linearity_Day 2.sky
13 May 2024 22:29:56,484 INFO : 4% Done
13 May 2024 22:29:58,688 INFO : Inserting P3CP
13 May 2024 22:29:58,704 INFO : 30% Done
13 May 2024 22:29:58,783 INFO : 47% Done
13 May 2024 22:29:58,844 INFO : 73% Done
13 May 2024 22:29:58,923 INFO : 98% Done
13 May 2024 22:29:58,994 INFO : Done parsing Skyline document.
13 May 2024 22:29:58,994 INFO : Creating and populating temp tables for Proportion values
13 May 2024 22:29:59,000 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
13 May 2024 22:29:59,011 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
13 May 2024 22:29:59,015 INFO : Cleaning up temp tables
13 May 2024 22:29:59,322 INFO : Completed import of Skyline document from 20230511_Procollagen SERUM_HoofnagleLab_Linearity_Day 2_2024-05-10_11-23-47.sky.zip
13 May 2024 22:29:59,324 INFO : 100% Done
13 May 2024 22:29:59,333 INFO : Starting import from 20230327_Procollagen SERUM_HoofnagleLab_Interference N1_2024-05-10_11-24-40.sky.zip
13 May 2024 22:29:59,334 INFO : Starting to import Skyline document from 20230327_Procollagen SERUM_HoofnagleLab_Interference N1_2024-05-10_11-24-40.sky.zip
13 May 2024 22:29:59,335 INFO : Expanding 20230327_Procollagen SERUM_HoofnagleLab_Interference N1.skyd
13 May 2024 22:29:59,357 INFO : Expanding 20230327_Procollagen SERUM_HoofnagleLab_Interference N1.sky.view
13 May 2024 22:29:59,357 INFO : Expanding 20230327_Procollagen SERUM_HoofnagleLab_Interference N1.sky
13 May 2024 22:29:59,365 INFO : 4% Done
13 May 2024 22:30:01,695 INFO : Inserting P3CP
13 May 2024 22:30:01,715 INFO : 30% Done
13 May 2024 22:30:01,817 INFO : 47% Done
13 May 2024 22:30:01,892 INFO : 73% Done
13 May 2024 22:30:01,989 INFO : 98% Done
13 May 2024 22:30:02,071 INFO : Inserting quality control
13 May 2024 22:30:02,074 INFO : Done parsing Skyline document.
13 May 2024 22:30:02,075 INFO : Creating and populating temp tables for Proportion values
13 May 2024 22:30:02,081 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
13 May 2024 22:30:02,094 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
13 May 2024 22:30:02,100 INFO : Cleaning up temp tables
13 May 2024 22:30:02,383 INFO : Completed import of Skyline document from 20230327_Procollagen SERUM_HoofnagleLab_Interference N1_2024-05-10_11-24-40.sky.zip
13 May 2024 22:30:02,385 INFO : 100% Done
13 May 2024 22:30:02,394 INFO : Starting import from 20230710_Procollagen SERUM_HoofnagleLab_Interference N2_2024-05-10_11-24-59.sky.zip
13 May 2024 22:30:02,395 INFO : Starting to import Skyline document from 20230710_Procollagen SERUM_HoofnagleLab_Interference N2_2024-05-10_11-24-59.sky.zip
13 May 2024 22:30:02,396 INFO : Expanding 20230710_Procollagen SERUM_HoofnagleLab_Interference N2.skyd
13 May 2024 22:30:02,414 INFO : Expanding 20230710_Procollagen SERUM_HoofnagleLab_Interference N2.sky.view
13 May 2024 22:30:02,415 INFO : Expanding 20230710_Procollagen SERUM_HoofnagleLab_Interference N2.sky
13 May 2024 22:30:02,422 INFO : 4% Done
13 May 2024 22:30:04,906 INFO : Inserting P3CP
13 May 2024 22:30:04,924 INFO : 30% Done
13 May 2024 22:30:05,018 INFO : 47% Done
13 May 2024 22:30:05,090 INFO : 73% Done
13 May 2024 22:30:05,185 INFO : 98% Done
13 May 2024 22:30:05,270 INFO : Done parsing Skyline document.
13 May 2024 22:30:05,271 INFO : Creating and populating temp tables for Proportion values
13 May 2024 22:30:05,276 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
13 May 2024 22:30:05,291 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
13 May 2024 22:30:05,296 INFO : Cleaning up temp tables
13 May 2024 22:30:05,597 INFO : Completed import of Skyline document from 20230710_Procollagen SERUM_HoofnagleLab_Interference N2_2024-05-10_11-24-59.sky.zip
13 May 2024 22:30:05,599 INFO : 100% Done
13 May 2024 22:30:05,607 INFO : Starting import from 20230728_Procollagen SERUM_HoofnagleLab_Interference N3_2024-05-10_11-25-19.sky.zip
13 May 2024 22:30:05,609 INFO : Starting to import Skyline document from 20230728_Procollagen SERUM_HoofnagleLab_Interference N3_2024-05-10_11-25-19.sky.zip
13 May 2024 22:30:05,610 INFO : Expanding 20230728_Procollagen SERUM_HoofnagleLab_Interference N3.skyd
13 May 2024 22:30:05,617 INFO : Expanding 20230728_Procollagen SERUM_HoofnagleLab_Interference N3.sky.view
13 May 2024 22:30:05,617 INFO : Expanding 20230728_Procollagen SERUM_HoofnagleLab_Interference N3.sky
13 May 2024 22:30:05,623 INFO : 5% Done
13 May 2024 22:30:08,192 INFO : Inserting P3CP
13 May 2024 22:30:08,203 INFO : 32% Done
13 May 2024 22:30:08,249 INFO : 50% Done
13 May 2024 22:30:08,283 INFO : 75% Done
13 May 2024 22:30:08,326 INFO : 98% Done
13 May 2024 22:30:08,360 INFO : Done parsing Skyline document.
13 May 2024 22:30:08,361 INFO : Creating and populating temp tables for Proportion values
13 May 2024 22:30:08,366 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
13 May 2024 22:30:08,371 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
13 May 2024 22:30:08,373 INFO : Cleaning up temp tables
13 May 2024 22:30:08,659 INFO : Completed import of Skyline document from 20230728_Procollagen SERUM_HoofnagleLab_Interference N3_2024-05-10_11-25-19.sky.zip
13 May 2024 22:30:08,661 INFO : 100% Done
13 May 2024 22:30:08,669 INFO : Starting import from 20230322_Procollagen SERUM_HoofnagleLab_Protein stability_2024-05-10_11-27-05.sky.zip
13 May 2024 22:30:08,671 INFO : Starting to import Skyline document from 20230322_Procollagen SERUM_HoofnagleLab_Protein stability_2024-05-10_11-27-05.sky.zip
13 May 2024 22:30:08,672 INFO : Expanding 20230322_Procollagen SERUM_HoofnagleLab_Protein stability.skyd
13 May 2024 22:30:08,694 INFO : Expanding 20230322_Procollagen SERUM_HoofnagleLab_Protein stability.sky.view
13 May 2024 22:30:08,695 INFO : Expanding 20230322_Procollagen SERUM_HoofnagleLab_Protein stability.sky
13 May 2024 22:30:08,703 INFO : 4% Done
13 May 2024 22:30:11,483 INFO : Inserting P3CP
13 May 2024 22:30:11,504 INFO : 30% Done
13 May 2024 22:30:11,618 INFO : 47% Done
13 May 2024 22:30:11,706 INFO : 73% Done
13 May 2024 22:30:11,822 INFO : 98% Done
13 May 2024 22:30:11,922 INFO : Done parsing Skyline document.
13 May 2024 22:30:11,923 INFO : Creating and populating temp tables for Proportion values
13 May 2024 22:30:11,928 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
13 May 2024 22:30:11,941 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
13 May 2024 22:30:11,946 INFO : Cleaning up temp tables
13 May 2024 22:30:12,236 INFO : Completed import of Skyline document from 20230322_Procollagen SERUM_HoofnagleLab_Protein stability_2024-05-10_11-27-05.sky.zip
13 May 2024 22:30:12,237 INFO : 100% Done
13 May 2024 22:30:12,246 INFO : Starting import from 20230516_Procollagen SERUM_HoofnagleLab_Linearity_Day 3_2024-05-13_16-51-20.sky.zip
13 May 2024 22:30:12,248 INFO : Starting to import Skyline document from 20230516_Procollagen SERUM_HoofnagleLab_Linearity_Day 3_2024-05-13_16-51-20.sky.zip
13 May 2024 22:30:12,249 INFO : Expanding 20230516_Procollagen SERUM_HoofnagleLab_Linearity_Day 3.skyd
13 May 2024 22:30:12,264 INFO : Expanding 20230516_Procollagen SERUM_HoofnagleLab_Linearity_Day 3.sky.view
13 May 2024 22:30:12,265 INFO : Expanding 20230516_Procollagen SERUM_HoofnagleLab_Linearity_Day 3.sky
13 May 2024 22:30:12,268 WARN : The version of this Skyline document is 23.12. This is newer than the highest supported version 23.1
13 May 2024 22:30:12,272 INFO : 5% Done
13 May 2024 22:30:15,147 INFO : Inserting P3CP
13 May 2024 22:30:15,164 INFO : 32% Done
13 May 2024 22:30:15,243 INFO : 50% Done
13 May 2024 22:30:15,304 INFO : 76% Done
13 May 2024 22:30:15,384 INFO : 98% Done
13 May 2024 22:30:15,446 INFO : Done parsing Skyline document.
13 May 2024 22:30:15,446 INFO : Creating and populating temp tables for Proportion values
13 May 2024 22:30:15,452 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
13 May 2024 22:30:15,463 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
13 May 2024 22:30:15,467 INFO : Cleaning up temp tables
13 May 2024 22:30:15,769 INFO : Completed import of Skyline document from 20230516_Procollagen SERUM_HoofnagleLab_Linearity_Day 3_2024-05-13_16-51-20.sky.zip
13 May 2024 22:30:15,771 INFO : 100% Done
13 May 2024 22:30:15,781 INFO : Starting import from 20230308_Procollagen SERUM_HoofnagleLab_Peptide stability_2024-05-13_16-58-52.sky.zip
13 May 2024 22:30:15,782 INFO : Starting to import Skyline document from 20230308_Procollagen SERUM_HoofnagleLab_Peptide stability_2024-05-13_16-58-52.sky.zip
13 May 2024 22:30:15,783 INFO : Expanding 20230308_Procollagen SERUM_HoofnagleLab_Peptide stability.skyd
13 May 2024 22:30:15,790 INFO : Expanding 20230308_Procollagen SERUM_HoofnagleLab_Peptide stability.sky.view
13 May 2024 22:30:15,790 INFO : Expanding 20230308_Procollagen SERUM_HoofnagleLab_Peptide stability.sky
13 May 2024 22:30:15,792 WARN : The version of this Skyline document is 23.12. This is newer than the highest supported version 23.1
13 May 2024 22:30:15,796 INFO : 5% Done
13 May 2024 22:30:18,791 INFO : Inserting P3CP
13 May 2024 22:30:18,800 INFO : 31% Done
13 May 2024 22:30:18,833 INFO : 49% Done
13 May 2024 22:30:18,856 INFO : 73% Done
13 May 2024 22:30:18,886 INFO : 98% Done
13 May 2024 22:30:18,915 INFO : Done parsing Skyline document.
13 May 2024 22:30:18,916 INFO : Creating and populating temp tables for Proportion values
13 May 2024 22:30:18,921 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
13 May 2024 22:30:18,925 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
13 May 2024 22:30:18,926 INFO : Cleaning up temp tables
13 May 2024 22:30:19,231 INFO : Completed import of Skyline document from 20230308_Procollagen SERUM_HoofnagleLab_Peptide stability_2024-05-13_16-58-52.sky.zip
13 May 2024 22:30:19,232 INFO : 100% Done
13 May 2024 22:30:19,241 INFO : Starting import from 20230308_Procollagen SERUM_HoofnagleLab_Peptide stability_2024-05-13_17-00-40.sky.zip
13 May 2024 22:30:19,243 INFO : Starting to import Skyline document from 20230308_Procollagen SERUM_HoofnagleLab_Peptide stability_2024-05-13_17-00-40.sky.zip
13 May 2024 22:30:19,244 INFO : Expanding 20230308_Procollagen SERUM_HoofnagleLab_Peptide stability.skyd
13 May 2024 22:30:19,251 INFO : Expanding 20230308_Procollagen SERUM_HoofnagleLab_Peptide stability.sky.view
13 May 2024 22:30:19,251 INFO : Expanding 20230308_Procollagen SERUM_HoofnagleLab_Peptide stability.sky
13 May 2024 22:30:19,254 WARN : The version of this Skyline document is 23.12. This is newer than the highest supported version 23.1
13 May 2024 22:30:19,258 INFO : 5% Done
13 May 2024 22:30:22,382 INFO : Inserting P3CP
13 May 2024 22:30:22,391 INFO : 31% Done
13 May 2024 22:30:22,423 INFO : 49% Done
13 May 2024 22:30:22,446 INFO : 73% Done
13 May 2024 22:30:22,475 INFO : 98% Done
13 May 2024 22:30:22,502 INFO : Done parsing Skyline document.
13 May 2024 22:30:22,502 INFO : Creating and populating temp tables for Proportion values
13 May 2024 22:30:22,507 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
13 May 2024 22:30:22,511 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
13 May 2024 22:30:22,512 INFO : Cleaning up temp tables
13 May 2024 22:30:22,837 INFO : Completed import of Skyline document from 20230308_Procollagen SERUM_HoofnagleLab_Peptide stability_2024-05-13_17-00-40.sky.zip
13 May 2024 22:30:22,839 INFO : 100% Done
13 May 2024 22:30:22,883 INFO : Done importing xar
13 May 2024 22:30:22,884 INFO : Loading pages and webpart properties
13 May 2024 22:30:22,944 INFO : Done importing 3 page(s) with 4 webpart(s)
13 May 2024 22:30:22,944 INFO : Loading File Browser config
13 May 2024 22:30:22,944 INFO : Done importing File Browser config
13 May 2024 22:30:22,945 INFO : Starting Sample Status Data import
13 May 2024 22:30:22,945 INFO : No sample types XAR file to process.
13 May 2024 22:30:22,945 INFO : Finished importing Sample Status Data
13 May 2024 22:30:22,953 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
13 May 2024 22:30:22,955 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
13 May 2024 22:30:22,956 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
13 May 2024 22:30:22,956 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
13 May 2024 22:30:22,956 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
13 May 2024 22:30:22,956 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
13 May 2024 22:30:22,958 INFO : Moving files to folder /Panorama Public/2024/Hoofnagle - III Procollagen Assay Validation Paper/02_Assay validation and creating symlinks
13 May 2024 22:30:24,998 INFO : Aligning data files urls in folder: /Panorama Public/2024/Hoofnagle - III Procollagen Assay Validation Paper/02_Assay validation
13 May 2024 22:30:25,082 INFO : Done importing folder archive for 02_Assay validation
13 May 2024 22:30:25,144 INFO : New folder created with inherited permissions: /Panorama Public/2024/Hoofnagle - III Procollagen Assay Validation Paper/03_Method application
13 May 2024 22:30:25,144 INFO : Loading folder archive for 03_Method application
13 May 2024 22:30:25,146 INFO : Loading folder properties (folder type, settings and active modules)
13 May 2024 22:30:25,211 INFO : Done importing folder properties (folder type, settings and active modules)
13 May 2024 22:30:25,212 INFO : Loading container specific module properties
13 May 2024 22:30:25,215 INFO : Done importing container specific module properties
13 May 2024 22:30:25,217 INFO : Loading queries
13 May 2024 22:30:25,221 INFO : 1 query imported
13 May 2024 22:30:25,221 INFO : Done importing queries
13 May 2024 22:30:25,222 INFO : Loading etl definitions
13 May 2024 22:30:25,223 INFO : Loading wikis
13 May 2024 22:30:25,225 INFO : 0 wikis imported
13 May 2024 22:30:25,225 INFO : Done importing wikis
13 May 2024 22:30:25,226 INFO : Starting Data Class Importer
13 May 2024 22:30:25,226 INFO : No types XAR file to process.
13 May 2024 22:30:25,226 INFO : Finished Data Class Importer
13 May 2024 22:30:25,227 INFO : Starting to copy files
13 May 2024 22:30:25,227 INFO : Copied 0 files
13 May 2024 22:30:25,227 INFO : Ensuring exp.data rows exist for imported files
13 May 2024 22:30:25,231 INFO : Starting Sample Type Importer
13 May 2024 22:30:25,231 INFO : No types XAR file to process.
13 May 2024 22:30:25,231 INFO : Finished Sample Type Importer
13 May 2024 22:30:25,233 INFO : Loading xar
13 May 2024 22:30:25,401 INFO : Starting import from 20230728_Procollagen SERUM_HoofnagleLab_Comparison_2024-05-10_11-27-33.sky.zip
13 May 2024 22:30:25,404 INFO : Starting to import Skyline document from 20230728_Procollagen SERUM_HoofnagleLab_Comparison_2024-05-10_11-27-33.sky.zip
13 May 2024 22:30:25,405 INFO : Expanding 20230728_Procollagen SERUM_HoofnagleLab_Comparison.skyd
13 May 2024 22:30:25,421 INFO : Expanding 20230728_Procollagen SERUM_HoofnagleLab_Comparison.sky.view
13 May 2024 22:30:25,422 INFO : Expanding 20230728_Procollagen SERUM_HoofnagleLab_Comparison.sky
13 May 2024 22:30:25,430 INFO : 4% Done
13 May 2024 22:30:26,181 INFO : Inserting P3CP
13 May 2024 22:30:26,202 INFO : 31% Done
13 May 2024 22:30:26,311 INFO : 49% Done
13 May 2024 22:30:26,389 INFO : 75% Done
13 May 2024 22:30:26,502 INFO : 98% Done
13 May 2024 22:30:26,581 INFO : Done parsing Skyline document.
13 May 2024 22:30:26,582 INFO : Creating and populating temp tables for Proportion values
13 May 2024 22:30:26,587 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
13 May 2024 22:30:26,601 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
13 May 2024 22:30:26,607 INFO : Cleaning up temp tables
13 May 2024 22:30:26,904 INFO : Completed import of Skyline document from 20230728_Procollagen SERUM_HoofnagleLab_Comparison_2024-05-10_11-27-33.sky.zip
13 May 2024 22:30:26,906 INFO : 100% Done
13 May 2024 22:30:26,915 INFO : Starting import from 20230810_Procollagen SERUM_HoofnagleLab_Affect age_2024-05-10_11-27-51.sky.zip
13 May 2024 22:30:26,916 INFO : Starting to import Skyline document from 20230810_Procollagen SERUM_HoofnagleLab_Affect age_2024-05-10_11-27-51.sky.zip
13 May 2024 22:30:26,917 INFO : Expanding 20230810_Procollagen SERUM_HoofnagleLab_Affect age.skyd
13 May 2024 22:30:26,938 INFO : Expanding 20230810_Procollagen SERUM_HoofnagleLab_Affect age.sky.view
13 May 2024 22:30:26,938 INFO : Expanding 20230810_Procollagen SERUM_HoofnagleLab_Affect age.sky
13 May 2024 22:30:26,946 INFO : 4% Done
13 May 2024 22:30:27,820 INFO : Inserting P3CP
13 May 2024 22:30:27,840 INFO : 31% Done
13 May 2024 22:30:27,937 INFO : 49% Done
13 May 2024 22:30:28,014 INFO : 76% Done
13 May 2024 22:30:28,111 INFO : 98% Done
13 May 2024 22:30:28,184 INFO : Done parsing Skyline document.
13 May 2024 22:30:28,184 INFO : Creating and populating temp tables for Proportion values
13 May 2024 22:30:28,189 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
13 May 2024 22:30:28,204 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
13 May 2024 22:30:28,209 INFO : Cleaning up temp tables
13 May 2024 22:30:28,551 INFO : Completed import of Skyline document from 20230810_Procollagen SERUM_HoofnagleLab_Affect age_2024-05-10_11-27-51.sky.zip
13 May 2024 22:30:28,553 INFO : 100% Done
13 May 2024 22:30:28,561 INFO : Starting import from 20230815_Procollagen SERUM_HoofnagleLab_Tasso device_2024-05-10_11-28-11.sky.zip
13 May 2024 22:30:28,562 INFO : Starting to import Skyline document from 20230815_Procollagen SERUM_HoofnagleLab_Tasso device_2024-05-10_11-28-11.sky.zip
13 May 2024 22:30:28,563 INFO : Expanding 20230815_Procollagen SERUM_HoofnagleLab_Tasso device.skyd
13 May 2024 22:30:28,577 INFO : Expanding 20230815_Procollagen SERUM_HoofnagleLab_Tasso device.sky.view
13 May 2024 22:30:28,577 INFO : Expanding 20230815_Procollagen SERUM_HoofnagleLab_Tasso device.sky
13 May 2024 22:30:28,584 INFO : 4% Done
13 May 2024 22:30:29,541 INFO : Inserting P3CP
13 May 2024 22:30:29,557 INFO : 31% Done
13 May 2024 22:30:29,634 INFO : 49% Done
13 May 2024 22:30:29,693 INFO : 76% Done
13 May 2024 22:30:29,768 INFO : 98% Done
13 May 2024 22:30:29,826 INFO : Done parsing Skyline document.
13 May 2024 22:30:29,827 INFO : Creating and populating temp tables for Proportion values
13 May 2024 22:30:29,832 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
13 May 2024 22:30:29,843 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
13 May 2024 22:30:29,847 INFO : Cleaning up temp tables
13 May 2024 22:30:30,157 INFO : Completed import of Skyline document from 20230815_Procollagen SERUM_HoofnagleLab_Tasso device_2024-05-10_11-28-11.sky.zip
13 May 2024 22:30:30,159 INFO : 100% Done
13 May 2024 22:30:30,173 INFO : Done importing xar
13 May 2024 22:30:30,174 INFO : Loading pages and webpart properties
13 May 2024 22:30:30,232 INFO : Done importing 3 page(s) with 4 webpart(s)
13 May 2024 22:30:30,232 INFO : Loading File Browser config
13 May 2024 22:30:30,232 INFO : Done importing File Browser config
13 May 2024 22:30:30,233 INFO : Starting Sample Status Data import
13 May 2024 22:30:30,233 INFO : No sample types XAR file to process.
13 May 2024 22:30:30,233 INFO : Finished importing Sample Status Data
13 May 2024 22:30:30,239 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
13 May 2024 22:30:30,242 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
13 May 2024 22:30:30,242 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
13 May 2024 22:30:30,243 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
13 May 2024 22:30:30,243 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
13 May 2024 22:30:30,243 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
13 May 2024 22:30:30,244 INFO : Moving files to folder /Panorama Public/2024/Hoofnagle - III Procollagen Assay Validation Paper/03_Method application and creating symlinks
13 May 2024 22:30:30,666 INFO : Aligning data files urls in folder: /Panorama Public/2024/Hoofnagle - III Procollagen Assay Validation Paper/03_Method application
13 May 2024 22:30:30,679 INFO : Done importing folder archive for 03_Method application
13 May 2024 22:30:30,733 INFO : New folder created with inherited permissions: /Panorama Public/2024/Hoofnagle - III Procollagen Assay Validation Paper/04_Plate Tube comparison
13 May 2024 22:30:30,733 INFO : Loading folder archive for 04_Plate Tube comparison
13 May 2024 22:30:30,734 INFO : Loading folder properties (folder type, settings and active modules)
13 May 2024 22:30:30,790 INFO : Done importing folder properties (folder type, settings and active modules)
13 May 2024 22:30:30,791 INFO : Loading container specific module properties
13 May 2024 22:30:30,794 INFO : Done importing container specific module properties
13 May 2024 22:30:30,796 INFO : Loading queries
13 May 2024 22:30:30,800 INFO : 1 query imported
13 May 2024 22:30:30,800 INFO : Done importing queries
13 May 2024 22:30:30,801 INFO : Loading etl definitions
13 May 2024 22:30:30,802 INFO : Loading wikis
13 May 2024 22:30:30,803 INFO : 0 wikis imported
13 May 2024 22:30:30,803 INFO : Done importing wikis
13 May 2024 22:30:30,804 INFO : Starting Data Class Importer
13 May 2024 22:30:30,804 INFO : No types XAR file to process.
13 May 2024 22:30:30,804 INFO : Finished Data Class Importer
13 May 2024 22:30:30,805 INFO : Starting to copy files
13 May 2024 22:30:30,805 INFO : Copied 0 files
13 May 2024 22:30:30,805 INFO : Ensuring exp.data rows exist for imported files
13 May 2024 22:30:30,809 INFO : Starting Sample Type Importer
13 May 2024 22:30:30,810 INFO : No types XAR file to process.
13 May 2024 22:30:30,810 INFO : Finished Sample Type Importer
13 May 2024 22:30:30,811 INFO : Loading xar
13 May 2024 22:30:31,039 INFO : Starting import from 20230405_Procollagen Serum_HoofnagleLab_Plate tube precision_2024-05-10_11-28-34.sky.zip
13 May 2024 22:30:31,042 INFO : Starting to import Skyline document from 20230405_Procollagen Serum_HoofnagleLab_Plate tube precision_2024-05-10_11-28-34.sky.zip
13 May 2024 22:30:31,042 INFO : Expanding 20230405_Procollagen Serum_HoofnagleLab_Plate tube precision.skyd
13 May 2024 22:30:31,071 INFO : Expanding 20230405_Procollagen Serum_HoofnagleLab_Plate tube precision.sky.view
13 May 2024 22:30:31,071 INFO : Expanding 20230405_Procollagen Serum_HoofnagleLab_Plate tube precision.sky
13 May 2024 22:30:31,081 INFO : 4% Done
13 May 2024 22:30:31,848 INFO : Inserting P3CP
13 May 2024 22:30:31,876 INFO : 30% Done
13 May 2024 22:30:32,011 INFO : 47% Done
13 May 2024 22:30:32,115 INFO : 73% Done
13 May 2024 22:30:32,251 INFO : 98% Done
13 May 2024 22:30:32,371 INFO : Done parsing Skyline document.
13 May 2024 22:30:32,371 INFO : Creating and populating temp tables for Proportion values
13 May 2024 22:30:32,376 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
13 May 2024 22:30:32,393 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
13 May 2024 22:30:32,399 INFO : Cleaning up temp tables
13 May 2024 22:30:32,698 INFO : Completed import of Skyline document from 20230405_Procollagen Serum_HoofnagleLab_Plate tube precision_2024-05-10_11-28-34.sky.zip
13 May 2024 22:30:32,700 INFO : 100% Done
13 May 2024 22:30:32,708 INFO : Starting import from 20230712_Procollagen Serum_HoofnagleLab_Plate tube correlation_2024-05-13_17-05-23.sky.zip
13 May 2024 22:30:32,709 INFO : Starting to import Skyline document from 20230712_Procollagen Serum_HoofnagleLab_Plate tube correlation_2024-05-13_17-05-23.sky.zip
13 May 2024 22:30:32,710 INFO : Expanding 20230712_Procollagen Serum_HoofnagleLab_Plate tube correlation.skyd
13 May 2024 22:30:32,739 INFO : Expanding 20230712_Procollagen Serum_HoofnagleLab_Plate tube correlation.sky.view
13 May 2024 22:30:32,739 INFO : Expanding 20230712_Procollagen Serum_HoofnagleLab_Plate tube correlation.sky
13 May 2024 22:30:32,748 WARN : The version of this Skyline document is 23.12. This is newer than the highest supported version 23.1
13 May 2024 22:30:32,752 INFO : 2% Done
13 May 2024 22:30:33,698 INFO : Inserting P3CP
13 May 2024 22:30:33,727 INFO : 16% Done
13 May 2024 22:30:33,886 INFO : 25% Done
13 May 2024 22:30:34,008 INFO : 38% Done
13 May 2024 22:30:34,173 INFO : 52% Done
13 May 2024 22:30:34,357 INFO : 77% Done
13 May 2024 22:30:34,564 INFO : 93% Done
13 May 2024 22:30:34,726 INFO : Inserting quality control
13 May 2024 22:30:34,732 INFO : 98% Done
13 May 2024 22:30:34,768 INFO : Done parsing Skyline document.
13 May 2024 22:30:34,769 INFO : Creating and populating temp tables for Proportion values
13 May 2024 22:30:34,775 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
13 May 2024 22:30:34,807 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
13 May 2024 22:30:34,819 INFO : Cleaning up temp tables
13 May 2024 22:30:35,173 INFO : Completed import of Skyline document from 20230712_Procollagen Serum_HoofnagleLab_Plate tube correlation_2024-05-13_17-05-23.sky.zip
13 May 2024 22:30:35,175 INFO : 100% Done
13 May 2024 22:30:35,187 INFO : Done importing xar
13 May 2024 22:30:35,188 INFO : Loading pages and webpart properties
13 May 2024 22:30:35,249 INFO : Done importing 3 page(s) with 4 webpart(s)
13 May 2024 22:30:35,249 INFO : Loading File Browser config
13 May 2024 22:30:35,249 INFO : Done importing File Browser config
13 May 2024 22:30:35,250 INFO : Starting Sample Status Data import
13 May 2024 22:30:35,250 INFO : No sample types XAR file to process.
13 May 2024 22:30:35,250 INFO : Finished importing Sample Status Data
13 May 2024 22:30:35,256 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
13 May 2024 22:30:35,258 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
13 May 2024 22:30:35,258 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
13 May 2024 22:30:35,259 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
13 May 2024 22:30:35,259 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
13 May 2024 22:30:35,259 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
13 May 2024 22:30:35,260 INFO : Moving files to folder /Panorama Public/2024/Hoofnagle - III Procollagen Assay Validation Paper/04_Plate Tube comparison and creating symlinks
13 May 2024 22:30:35,713 INFO : Aligning data files urls in folder: /Panorama Public/2024/Hoofnagle - III Procollagen Assay Validation Paper/04_Plate Tube comparison
13 May 2024 22:30:35,722 INFO : Done importing folder archive for 04_Plate Tube comparison
13 May 2024 22:30:35,722 INFO : Done importing subfolders and container tabs
13 May 2024 22:30:35,723 INFO : Moving files to folder /Panorama Public/2024/Hoofnagle - III Procollagen Assay Validation Paper and creating symlinks
13 May 2024 22:30:35,737 INFO : Aligning data files urls in folder: /Panorama Public/2024/Hoofnagle - III Procollagen Assay Validation Paper
13 May 2024 22:30:35,737 INFO : Importing files metadata.
13 May 2024 22:30:35,744 INFO :
13 May 2024 22:30:35,744 INFO : Experiment import completed successfully.
13 May 2024 22:30:35,744 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
13 May 2024 22:30:35,762 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
13 May 2024 22:30:35,763 INFO :
13 May 2024 22:30:35,763 INFO : Checking for library folders.
13 May 2024 22:30:35,767 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
13 May 2024 22:30:35,781 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
13 May 2024 22:30:35,781 INFO :
13 May 2024 22:30:35,781 INFO : Finishing up experiment copy.
13 May 2024 22:30:35,783 INFO : Updating TargetedMS experiment entry in target folder /Panorama Public/2024/Hoofnagle - III Procollagen Assay Validation Paper
13 May 2024 22:30:35,783 INFO : Setting version on new experiment to 1
13 May 2024 22:30:35,786 INFO : Updating permanent link to point to the new copy of the data.
13 May 2024 22:30:35,841 INFO : Removing copy permissions given to Panorama Public
13 May 2024 22:30:35,856 INFO : Adding read permissions to all users that are folder admins in the source folder.
13 May 2024 22:30:35,857 INFO : Assigning ReaderRole to klf5846@uw.edu
13 May 2024 22:30:35,857 INFO : Assigning ReaderRole to hhuynh89@uw.edu
13 May 2024 22:30:35,857 INFO : Assigning ReaderRole to ahoof@uw.edu
13 May 2024 22:30:35,857 INFO : Assigning PanoramaPublicSubmitterRole to hhuynh89@uw.edu
13 May 2024 22:30:35,857 INFO : Assigning PanoramaPublicSubmitterRole to ahoof@uw.edu
13 May 2024 22:30:35,864 INFO : User hhuynh89@uw.edu is already a member of group Panorama Public Submitters
13 May 2024 22:30:35,865 INFO : Adding user ahoof@uw.edu to group Panorama Public Submitters
13 May 2024 22:30:35,866 INFO : Updating the 'Raw Data' tab configuration
13 May 2024 22:30:35,868 INFO : Creating a reviewer account.
13 May 2024 22:30:35,936 INFO : Created reviewer with email: panorama+reviewer260@proteinms.net
13 May 2024 22:30:35,936 INFO : Generating password.
13 May 2024 22:30:36,069 INFO : Set reviewer password successfully.
13 May 2024 22:30:36,076 INFO : Adding user panorama+reviewer260@proteinms.net to group Reviewers
13 May 2024 22:30:36,078 INFO : Hiding the Data Pipeline tab.
13 May 2024 22:30:36,096 INFO : Updating Submission. Setting copiedExperimentId to 1815
13 May 2024 22:30:40,571 INFO : Assigning a ProteomeXchange ID.
13 May 2024 22:30:40,833 INFO : Assigned ProteomeXchange ID: PXD052245
13 May 2024 22:30:40,833 INFO : Assigning a DOI.
13 May 2024 22:30:41,757 INFO : Assigned DOI: 10.6069/vpzw-0a76
13 May 2024 22:30:41,886 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'