Copying experiment: optiPRM: A targeted immunopeptidomics LC-MS workflow with ultra-high sensitivity for the detection of mutation-derived tumor neoepitopes from limited input material

German Cancer Research Center Division of Immunotherapy and Immunoprevention - optiPRM

Job Status

Created: 2024-04-24 13:34:28
Modified: 2024-04-24 13:34:53
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Copying experiment: optiPRM: A targeted immunopeptidomics LC-MS workflow with ultra-high sensitivity for the detection of mutation-derived tumor neoepitopes from limited input material
File Path: /data/labkey/files/Panorama Public/2024/German Cancer Research Center Division of Immunotherapy and Immunoprevention - optiPRM/@files/Experiment_1887.log
Files: Experiment_1887.log
Completed Runs: id_all_2024-04-23_13-24-05.sky.zip
id_all_2024-04-23_13-24-59.sky.zip
id_all_2024-04-23_13-25-44.sky.zip
id_all_2024-04-23_13-26-20.sky.zip
id_all_2024-04-23_13-26-58.sky.zip
id_all_2024-04-23_13-27-43.sky.zip
id_all_2024-04-23_13-30-06.sky.zip

Log File


24 Apr 2024 13:34:28,938 INFO : Copying experiment "optiPRM: A targeted immunopeptidomics LC-MS workflow with ultra-high sensitivity for the detection of mutation-derived tumor neoepitopes from limited input material" from folder /German Cancer Research Center - Division of Immunotherapy and Immunoprevention/optiPRM to /Panorama Public/2024/German Cancer Research Center Division of Immunotherapy and Immunoprevention - optiPRM
24 Apr 2024 13:34:28,938 INFO : =======================================
24 Apr 2024 13:34:29,005 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
24 Apr 2024 13:34:29,005 INFO :
24 Apr 2024 13:34:29,006 INFO : Exporting experiment.
24 Apr 2024 13:34:30,884 INFO : Exporting files metadata.
24 Apr 2024 13:34:30,893 INFO :
24 Apr 2024 13:34:30,893 INFO : Experiment export completed successfully.
24 Apr 2024 13:34:30,894 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
24 Apr 2024 13:34:30,921 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
24 Apr 2024 13:34:30,921 INFO :
24 Apr 2024 13:34:30,921 INFO : Importing experiment.
24 Apr 2024 13:34:30,925 INFO : Loading folder properties (folder type, settings and active modules)
24 Apr 2024 13:34:30,997 INFO : Done importing folder properties (folder type, settings and active modules)
24 Apr 2024 13:34:30,998 INFO : Loading container specific module properties
24 Apr 2024 13:34:31,002 INFO : Done importing container specific module properties
24 Apr 2024 13:34:31,004 INFO : Loading queries
24 Apr 2024 13:34:31,008 INFO : 1 query imported
24 Apr 2024 13:34:31,009 INFO : Done importing queries
24 Apr 2024 13:34:31,010 INFO : Loading etl definitions
24 Apr 2024 13:34:31,011 INFO : Loading wikis
24 Apr 2024 13:34:31,013 INFO : 0 wikis imported
24 Apr 2024 13:34:31,013 INFO : Done importing wikis
24 Apr 2024 13:34:31,014 INFO : Starting Data Class Importer
24 Apr 2024 13:34:31,015 INFO : No types XAR file to process.
24 Apr 2024 13:34:31,015 INFO : Finished Data Class Importer
24 Apr 2024 13:34:31,015 INFO : Starting to copy files
24 Apr 2024 13:34:31,015 INFO : Copied 0 files
24 Apr 2024 13:34:31,015 INFO : Ensuring exp.data rows exist for imported files
24 Apr 2024 13:34:31,115 INFO : Starting Sample Type Importer
24 Apr 2024 13:34:31,116 INFO : No types XAR file to process.
24 Apr 2024 13:34:31,116 INFO : Finished Sample Type Importer
24 Apr 2024 13:34:31,117 INFO : Loading xar
24 Apr 2024 13:34:31,682 INFO : Starting import from id_all_2024-04-23_13-24-05.sky.zip
24 Apr 2024 13:34:31,685 INFO : Starting to import Skyline document from id_all_2024-04-23_13-24-05.sky.zip
24 Apr 2024 13:34:31,685 INFO : Expanding hpv16_map_all_gen1_a1_a2_a3_a11_b7_oe_211127.blib
24 Apr 2024 13:34:31,686 INFO : Expanding id_all.skyd
24 Apr 2024 13:34:31,700 INFO : Expanding id_all.sky.view
24 Apr 2024 13:34:31,700 INFO : Expanding id_all.sky
24 Apr 2024 13:34:31,706 INFO : 16% Done
24 Apr 2024 13:34:31,897 INFO : Inserting peptides1
24 Apr 2024 13:34:31,906 INFO : 98% Done
24 Apr 2024 13:34:31,940 INFO : Done parsing Skyline document.
24 Apr 2024 13:34:31,941 INFO : Creating and populating temp tables for Proportion values
24 Apr 2024 13:34:31,945 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
24 Apr 2024 13:34:31,946 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
24 Apr 2024 13:34:31,947 INFO : Cleaning up temp tables
24 Apr 2024 13:34:32,210 INFO : Completed import of Skyline document from id_all_2024-04-23_13-24-05.sky.zip
24 Apr 2024 13:34:32,212 INFO : 100% Done
24 Apr 2024 13:34:32,218 INFO : Starting import from id_all_2024-04-23_13-24-59.sky.zip
24 Apr 2024 13:34:32,219 INFO : Starting to import Skyline document from id_all_2024-04-23_13-24-59.sky.zip
24 Apr 2024 13:34:32,220 INFO : Expanding prtc_nce30_oe_220110.blib
24 Apr 2024 13:34:32,221 INFO : Expanding tipc309_oe_210512.blib
24 Apr 2024 13:34:32,222 INFO : Expanding TIPC309-210512-h-Complete.blib
24 Apr 2024 13:34:32,222 INFO : Expanding id_all.skyd
24 Apr 2024 13:34:32,248 INFO : Expanding id_all.sky.view
24 Apr 2024 13:34:32,248 INFO : Expanding id_all.sky
24 Apr 2024 13:34:32,264 INFO : 1% Done
24 Apr 2024 13:34:33,771 INFO : Inserting iRTs
24 Apr 2024 13:34:33,776 INFO : 3% Done
24 Apr 2024 13:34:33,797 INFO : 5% Done
24 Apr 2024 13:34:33,815 INFO : 7% Done
24 Apr 2024 13:34:33,832 INFO : 9% Done
24 Apr 2024 13:34:33,849 INFO : 11% Done
24 Apr 2024 13:34:33,866 INFO : 13% Done
24 Apr 2024 13:34:33,883 INFO : 16% Done
24 Apr 2024 13:34:33,900 INFO : 18% Done
24 Apr 2024 13:34:33,917 INFO : 20% Done
24 Apr 2024 13:34:33,933 INFO : 22% Done
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24 Apr 2024 13:34:33,967 INFO : 25% Done
24 Apr 2024 13:34:33,984 INFO : 27% Done
24 Apr 2024 13:34:34,000 INFO : 29% Done
24 Apr 2024 13:34:34,016 INFO : Inserting HLA-A2 Ctrl Pos
24 Apr 2024 13:34:34,029 INFO : 30% Done
24 Apr 2024 13:34:34,042 INFO : Inserting HLA-A2 Ctrl Neg
24 Apr 2024 13:34:34,045 INFO : 31% Done
24 Apr 2024 13:34:34,074 INFO : Inserting peptides1
24 Apr 2024 13:34:34,077 INFO : 32% Done
24 Apr 2024 13:34:34,097 INFO : 34% Done
24 Apr 2024 13:34:34,130 INFO : 36% Done
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24 Apr 2024 13:34:35,383 INFO : 92% Done
24 Apr 2024 13:34:35,400 INFO : 93% Done
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24 Apr 2024 13:34:35,449 INFO : 95% Done
24 Apr 2024 13:34:35,465 INFO : 96% Done
24 Apr 2024 13:34:35,482 INFO : 97% Done
24 Apr 2024 13:34:35,514 INFO : 98% Done
24 Apr 2024 13:34:35,530 INFO : Done parsing Skyline document.
24 Apr 2024 13:34:35,531 INFO : Creating and populating temp tables for Proportion values
24 Apr 2024 13:34:35,539 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
24 Apr 2024 13:34:35,598 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
24 Apr 2024 13:34:35,641 INFO : Cleaning up temp tables
24 Apr 2024 13:34:35,947 INFO : Completed import of Skyline document from id_all_2024-04-23_13-24-59.sky.zip
24 Apr 2024 13:34:35,949 INFO : 100% Done
24 Apr 2024 13:34:35,956 INFO : Starting import from id_all_2024-04-23_13-25-44.sky.zip
24 Apr 2024 13:34:35,958 INFO : Starting to import Skyline document from id_all_2024-04-23_13-25-44.sky.zip
24 Apr 2024 13:34:35,958 INFO : Expanding prtc_nce30_oe_220110.blib
24 Apr 2024 13:34:35,959 INFO : Expanding tipc309_h_oe_221011.blib
24 Apr 2024 13:34:35,960 INFO : Expanding tipc309_oe_210512.blib
24 Apr 2024 13:34:35,960 INFO : Expanding TIPC309-210512-h-Complete.blib
24 Apr 2024 13:34:35,961 INFO : Expanding id_all.skyd
24 Apr 2024 13:34:35,978 INFO : Expanding id_all.sky.view
24 Apr 2024 13:34:35,978 INFO : Expanding id_all.sky
24 Apr 2024 13:34:35,985 INFO : 1% Done
24 Apr 2024 13:34:37,453 INFO : Inserting iRTs
24 Apr 2024 13:34:37,456 INFO : 3% Done
24 Apr 2024 13:34:37,471 INFO : 5% Done
24 Apr 2024 13:34:37,482 INFO : 7% Done
24 Apr 2024 13:34:37,493 INFO : 9% Done
24 Apr 2024 13:34:37,504 INFO : 11% Done
24 Apr 2024 13:34:37,515 INFO : 13% Done
24 Apr 2024 13:34:37,526 INFO : 15% Done
24 Apr 2024 13:34:37,537 INFO : 17% Done
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24 Apr 2024 13:34:37,570 INFO : 23% Done
24 Apr 2024 13:34:37,581 INFO : 24% Done
24 Apr 2024 13:34:37,592 INFO : 25% Done
24 Apr 2024 13:34:37,603 INFO : 27% Done
24 Apr 2024 13:34:37,614 INFO : 29% Done
24 Apr 2024 13:34:37,624 INFO : Inserting HLA-A2 Ctrl Pos
24 Apr 2024 13:34:37,627 INFO : 31% Done
24 Apr 2024 13:34:37,652 INFO : 34% Done
24 Apr 2024 13:34:37,671 INFO : Inserting HLA-A2 Ctrl Neg
24 Apr 2024 13:34:37,674 INFO : 35% Done
24 Apr 2024 13:34:37,685 INFO : 36% Done
24 Apr 2024 13:34:37,694 INFO : Inserting peptides1
24 Apr 2024 13:34:37,696 INFO : 37% Done
24 Apr 2024 13:34:37,710 INFO : 39% Done
24 Apr 2024 13:34:37,731 INFO : 40% Done
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24 Apr 2024 13:34:38,555 INFO : 97% Done
24 Apr 2024 13:34:38,577 INFO : 98% Done
24 Apr 2024 13:34:38,587 INFO : Done parsing Skyline document.
24 Apr 2024 13:34:38,588 INFO : Creating and populating temp tables for Proportion values
24 Apr 2024 13:34:38,595 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
24 Apr 2024 13:34:38,638 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
24 Apr 2024 13:34:38,669 INFO : Cleaning up temp tables
24 Apr 2024 13:34:38,959 INFO : Completed import of Skyline document from id_all_2024-04-23_13-25-44.sky.zip
24 Apr 2024 13:34:38,961 INFO : 100% Done
24 Apr 2024 13:34:38,966 INFO : Starting import from id_all_2024-04-23_13-26-20.sky.zip
24 Apr 2024 13:34:38,968 INFO : Starting to import Skyline document from id_all_2024-04-23_13-26-20.sky.zip
24 Apr 2024 13:34:38,969 INFO : Expanding prtc_nce30_oe_220110.blib
24 Apr 2024 13:34:38,969 INFO : Expanding tipc309_h_oe_231122.blib
24 Apr 2024 13:34:38,970 INFO : Expanding TIPC309-210512-h-Complete.blib
24 Apr 2024 13:34:38,970 INFO : Expanding id_all.skyd
24 Apr 2024 13:34:39,052 INFO : Expanding id_all.sky.view
24 Apr 2024 13:34:39,053 INFO : Expanding id_all.sky
24 Apr 2024 13:34:39,061 INFO : 1% Done
24 Apr 2024 13:34:40,503 INFO : Inserting iRTs
24 Apr 2024 13:34:40,506 INFO : 3% Done
24 Apr 2024 13:34:40,518 INFO : 5% Done
24 Apr 2024 13:34:40,528 INFO : 7% Done
24 Apr 2024 13:34:40,537 INFO : 10% Done
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24 Apr 2024 13:34:40,592 INFO : 22% Done
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24 Apr 2024 13:34:40,621 INFO : 28% Done
24 Apr 2024 13:34:40,630 INFO : 30% Done
24 Apr 2024 13:34:40,640 INFO : 32% Done
24 Apr 2024 13:34:40,648 INFO : Inserting HLA-A2 Ctrl Pos
24 Apr 2024 13:34:40,650 INFO : 34% Done
24 Apr 2024 13:34:40,662 INFO : 36% Done
24 Apr 2024 13:34:40,671 INFO : Inserting HLA-A2 Ctrl Neg
24 Apr 2024 13:34:40,682 INFO : 37% Done
24 Apr 2024 13:34:40,690 INFO : Inserting peptides1
24 Apr 2024 13:34:40,692 INFO : 38% Done
24 Apr 2024 13:34:40,702 INFO : 39% Done
24 Apr 2024 13:34:40,715 INFO : 41% Done
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24 Apr 2024 13:34:41,401 INFO : 97% Done
24 Apr 2024 13:34:41,420 INFO : 98% Done
24 Apr 2024 13:34:41,429 INFO : Done parsing Skyline document.
24 Apr 2024 13:34:41,430 INFO : Creating and populating temp tables for Proportion values
24 Apr 2024 13:34:41,437 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
24 Apr 2024 13:34:41,468 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
24 Apr 2024 13:34:41,490 INFO : Cleaning up temp tables
24 Apr 2024 13:34:41,786 INFO : Completed import of Skyline document from id_all_2024-04-23_13-26-20.sky.zip
24 Apr 2024 13:34:41,788 INFO : 100% Done
24 Apr 2024 13:34:41,793 INFO : Starting import from id_all_2024-04-23_13-26-58.sky.zip
24 Apr 2024 13:34:41,794 INFO : Starting to import Skyline document from id_all_2024-04-23_13-26-58.sky.zip
24 Apr 2024 13:34:41,795 INFO : Expanding prtc_nce30_oe_220110.blib
24 Apr 2024 13:34:41,796 INFO : Expanding poc002_oe_210506_2.blib
24 Apr 2024 13:34:41,796 INFO : Expanding id_all.skyd
24 Apr 2024 13:34:41,805 INFO : Expanding id_all.sky.view
24 Apr 2024 13:34:41,805 INFO : Expanding id_all.sky
24 Apr 2024 13:34:41,812 INFO : 2% Done
24 Apr 2024 13:34:43,239 INFO : Inserting iRTs
24 Apr 2024 13:34:43,242 INFO : 4% Done
24 Apr 2024 13:34:43,253 INFO : 6% Done
24 Apr 2024 13:34:43,263 INFO : 9% Done
24 Apr 2024 13:34:43,272 INFO : 11% Done
24 Apr 2024 13:34:43,282 INFO : 13% Done
24 Apr 2024 13:34:43,291 INFO : 16% Done
24 Apr 2024 13:34:43,300 INFO : 18% Done
24 Apr 2024 13:34:43,309 INFO : 20% Done
24 Apr 2024 13:34:43,318 INFO : 23% Done
24 Apr 2024 13:34:43,327 INFO : 25% Done
24 Apr 2024 13:34:43,337 INFO : 26% Done
24 Apr 2024 13:34:43,346 INFO : 29% Done
24 Apr 2024 13:34:43,355 INFO : 31% Done
24 Apr 2024 13:34:43,365 INFO : 33% Done
24 Apr 2024 13:34:43,374 INFO : 36% Done
24 Apr 2024 13:34:43,382 INFO : Inserting HLA-A2-Ctrl-Pos
24 Apr 2024 13:34:43,384 INFO : 37% Done
24 Apr 2024 13:34:43,396 INFO : 38% Done
24 Apr 2024 13:34:43,408 INFO : 39% Done
24 Apr 2024 13:34:43,419 INFO : 41% Done
24 Apr 2024 13:34:43,429 INFO : Inserting HLA-A2-Ctrl-Neg
24 Apr 2024 13:34:43,431 INFO : 42% Done
24 Apr 2024 13:34:43,441 INFO : 44% Done
24 Apr 2024 13:34:43,452 INFO : 45% Done
24 Apr 2024 13:34:43,462 INFO : 46% Done
24 Apr 2024 13:34:43,471 INFO : Inserting poc_002
24 Apr 2024 13:34:43,474 INFO : 49% Done
24 Apr 2024 13:34:43,490 INFO : 50% Done
24 Apr 2024 13:34:43,502 INFO : 52% Done
24 Apr 2024 13:34:43,518 INFO : 53% Done
24 Apr 2024 13:34:43,530 INFO : 56% Done
24 Apr 2024 13:34:43,546 INFO : 57% Done
24 Apr 2024 13:34:43,556 INFO : 58% Done
24 Apr 2024 13:34:43,566 INFO : 59% Done
24 Apr 2024 13:34:43,576 INFO : 60% Done
24 Apr 2024 13:34:43,587 INFO : 61% Done
24 Apr 2024 13:34:43,604 INFO : 63% Done
24 Apr 2024 13:34:43,621 INFO : 65% Done
24 Apr 2024 13:34:43,633 INFO : 66% Done
24 Apr 2024 13:34:43,645 INFO : 67% Done
24 Apr 2024 13:34:43,656 INFO : 68% Done
24 Apr 2024 13:34:43,666 INFO : 69% Done
24 Apr 2024 13:34:43,676 INFO : 71% Done
24 Apr 2024 13:34:43,685 INFO : 72% Done
24 Apr 2024 13:34:43,697 INFO : 74% Done
24 Apr 2024 13:34:43,722 INFO : 75% Done
24 Apr 2024 13:34:43,733 INFO : 76% Done
24 Apr 2024 13:34:43,743 INFO : 77% Done
24 Apr 2024 13:34:43,754 INFO : 78% Done
24 Apr 2024 13:34:43,764 INFO : 79% Done
24 Apr 2024 13:34:43,774 INFO : 80% Done
24 Apr 2024 13:34:43,784 INFO : 81% Done
24 Apr 2024 13:34:43,794 INFO : 82% Done
24 Apr 2024 13:34:43,804 INFO : 84% Done
24 Apr 2024 13:34:43,814 INFO : 85% Done
24 Apr 2024 13:34:43,824 INFO : 86% Done
24 Apr 2024 13:34:43,833 INFO : 87% Done
24 Apr 2024 13:34:43,843 INFO : 88% Done
24 Apr 2024 13:34:43,862 INFO : 89% Done
24 Apr 2024 13:34:43,872 INFO : 91% Done
24 Apr 2024 13:34:43,882 INFO : 92% Done
24 Apr 2024 13:34:43,892 INFO : 93% Done
24 Apr 2024 13:34:43,902 INFO : 94% Done
24 Apr 2024 13:34:43,913 INFO : 95% Done
24 Apr 2024 13:34:43,923 INFO : 96% Done
24 Apr 2024 13:34:43,933 INFO : 97% Done
24 Apr 2024 13:34:43,943 INFO : 98% Done
24 Apr 2024 13:34:43,953 INFO : Done parsing Skyline document.
24 Apr 2024 13:34:43,954 INFO : Creating and populating temp tables for Proportion values
24 Apr 2024 13:34:43,960 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
24 Apr 2024 13:34:43,977 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
24 Apr 2024 13:34:43,989 INFO : Cleaning up temp tables
24 Apr 2024 13:34:44,248 INFO : Completed import of Skyline document from id_all_2024-04-23_13-26-58.sky.zip
24 Apr 2024 13:34:44,250 INFO : 100% Done
24 Apr 2024 13:34:44,256 INFO : Starting import from id_all_2024-04-23_13-27-43.sky.zip
24 Apr 2024 13:34:44,257 INFO : Starting to import Skyline document from id_all_2024-04-23_13-27-43.sky.zip
24 Apr 2024 13:34:44,258 INFO : Expanding prtc_nce30_oe_220110.blib
24 Apr 2024 13:34:44,259 INFO : Expanding nct_poc_001_ SQPMQRQTL_oe_210112.blib
24 Apr 2024 13:34:44,259 INFO : Expanding nct_poc_001_oe_220121.blib
24 Apr 2024 13:34:44,260 INFO : Expanding id_all.skyd
24 Apr 2024 13:34:44,268 INFO : Expanding id_all.sky.view
24 Apr 2024 13:34:44,268 INFO : Expanding id_all.sky
24 Apr 2024 13:34:44,275 INFO : 1% Done
24 Apr 2024 13:34:45,703 INFO : Inserting iRTs
24 Apr 2024 13:34:45,707 INFO : 3% Done
24 Apr 2024 13:34:45,722 INFO : 6% Done
24 Apr 2024 13:34:45,735 INFO : 8% Done
24 Apr 2024 13:34:45,748 INFO : 10% Done
24 Apr 2024 13:34:45,762 INFO : 13% Done
24 Apr 2024 13:34:45,777 INFO : 15% Done
24 Apr 2024 13:34:45,791 INFO : 17% Done
24 Apr 2024 13:34:45,803 INFO : 19% Done
24 Apr 2024 13:34:45,816 INFO : 22% Done
24 Apr 2024 13:34:45,829 INFO : 24% Done
24 Apr 2024 13:34:45,841 INFO : 25% Done
24 Apr 2024 13:34:45,854 INFO : 27% Done
24 Apr 2024 13:34:45,868 INFO : 30% Done
24 Apr 2024 13:34:45,881 INFO : 32% Done
24 Apr 2024 13:34:45,895 INFO : 35% Done
24 Apr 2024 13:34:45,905 INFO : Inserting HLAA2_pos
24 Apr 2024 13:34:45,908 INFO : 36% Done
24 Apr 2024 13:34:45,923 INFO : 38% Done
24 Apr 2024 13:34:45,936 INFO : Inserting HLAA2_neg
24 Apr 2024 13:34:45,939 INFO : 39% Done
24 Apr 2024 13:34:45,952 INFO : 40% Done
24 Apr 2024 13:34:45,962 INFO : Inserting HLAB7_pos
24 Apr 2024 13:34:45,965 INFO : 41% Done
24 Apr 2024 13:34:45,979 INFO : 43% Done
24 Apr 2024 13:34:45,992 INFO : Inserting nct_poc_001
24 Apr 2024 13:34:45,995 INFO : 44% Done
24 Apr 2024 13:34:46,009 INFO : 45% Done
24 Apr 2024 13:34:46,022 INFO : 46% Done
24 Apr 2024 13:34:46,035 INFO : 48% Done
24 Apr 2024 13:34:46,051 INFO : 49% Done
24 Apr 2024 13:34:46,064 INFO : 50% Done
24 Apr 2024 13:34:46,075 INFO : 51% Done
24 Apr 2024 13:34:46,088 INFO : 52% Done
24 Apr 2024 13:34:46,101 INFO : 54% Done
24 Apr 2024 13:34:46,115 INFO : 55% Done
24 Apr 2024 13:34:46,127 INFO : 56% Done
24 Apr 2024 13:34:46,142 INFO : 58% Done
24 Apr 2024 13:34:46,155 INFO : 59% Done
24 Apr 2024 13:34:46,180 INFO : 61% Done
24 Apr 2024 13:34:46,194 INFO : 62% Done
24 Apr 2024 13:34:46,207 INFO : 63% Done
24 Apr 2024 13:34:46,223 INFO : 65% Done
24 Apr 2024 13:34:46,236 INFO : 66% Done
24 Apr 2024 13:34:46,249 INFO : 67% Done
24 Apr 2024 13:34:46,262 INFO : 68% Done
24 Apr 2024 13:34:46,274 INFO : 69% Done
24 Apr 2024 13:34:46,288 INFO : 70% Done
24 Apr 2024 13:34:46,302 INFO : 71% Done
24 Apr 2024 13:34:46,315 INFO : 73% Done
24 Apr 2024 13:34:46,327 INFO : 74% Done
24 Apr 2024 13:34:46,352 INFO : 75% Done
24 Apr 2024 13:34:46,365 INFO : 76% Done
24 Apr 2024 13:34:46,377 INFO : 77% Done
24 Apr 2024 13:34:46,390 INFO : 78% Done
24 Apr 2024 13:34:46,403 INFO : 79% Done
24 Apr 2024 13:34:46,416 INFO : 80% Done
24 Apr 2024 13:34:46,428 INFO : 81% Done
24 Apr 2024 13:34:46,443 INFO : 83% Done
24 Apr 2024 13:34:46,455 INFO : 84% Done
24 Apr 2024 13:34:46,469 INFO : 85% Done
24 Apr 2024 13:34:46,481 INFO : 86% Done
24 Apr 2024 13:34:46,494 INFO : 87% Done
24 Apr 2024 13:34:46,507 INFO : 88% Done
24 Apr 2024 13:34:46,520 INFO : 89% Done
24 Apr 2024 13:34:46,533 INFO : 91% Done
24 Apr 2024 13:34:46,546 INFO : 92% Done
24 Apr 2024 13:34:46,559 INFO : 93% Done
24 Apr 2024 13:34:46,572 INFO : 94% Done
24 Apr 2024 13:34:46,586 INFO : 96% Done
24 Apr 2024 13:34:46,609 INFO : 97% Done
24 Apr 2024 13:34:46,622 INFO : 98% Done
24 Apr 2024 13:34:46,634 INFO : Done parsing Skyline document.
24 Apr 2024 13:34:46,634 INFO : Creating and populating temp tables for Proportion values
24 Apr 2024 13:34:46,640 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
24 Apr 2024 13:34:46,652 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
24 Apr 2024 13:34:46,661 INFO : Cleaning up temp tables
24 Apr 2024 13:34:46,932 INFO : Completed import of Skyline document from id_all_2024-04-23_13-27-43.sky.zip
24 Apr 2024 13:34:46,933 INFO : 100% Done
24 Apr 2024 13:34:46,938 INFO : Starting import from id_all_2024-04-23_13-30-06.sky.zip
24 Apr 2024 13:34:46,939 INFO : Starting to import Skyline document from id_all_2024-04-23_13-30-06.sky.zip
24 Apr 2024 13:34:46,940 INFO : Expanding prtc_nce30_oe_220110.blib
24 Apr 2024 13:34:46,941 INFO : Expanding poc004_oe_210907.blib
24 Apr 2024 13:34:46,941 INFO : Expanding hpv16_map_all_gen1_oe_220124.blib
24 Apr 2024 13:34:46,942 INFO : Expanding id_all.skyd
24 Apr 2024 13:34:46,949 INFO : Expanding id_all.sky.view
24 Apr 2024 13:34:46,950 INFO : Expanding id_all.sky
24 Apr 2024 13:34:46,958 INFO : 2% Done
24 Apr 2024 13:34:48,383 INFO : Inserting iRTs
24 Apr 2024 13:34:48,386 INFO : 4% Done
24 Apr 2024 13:34:48,398 INFO : 5% Done
24 Apr 2024 13:34:48,407 INFO : 7% Done
24 Apr 2024 13:34:48,415 INFO : 9% Done
24 Apr 2024 13:34:48,423 INFO : 11% Done
24 Apr 2024 13:34:48,432 INFO : 13% Done
24 Apr 2024 13:34:48,440 INFO : 15% Done
24 Apr 2024 13:34:48,448 INFO : 17% Done
24 Apr 2024 13:34:48,457 INFO : 19% Done
24 Apr 2024 13:34:48,466 INFO : 21% Done
24 Apr 2024 13:34:48,476 INFO : 22% Done
24 Apr 2024 13:34:48,484 INFO : 24% Done
24 Apr 2024 13:34:48,493 INFO : 25% Done
24 Apr 2024 13:34:48,501 INFO : 27% Done
24 Apr 2024 13:34:48,509 INFO : 29% Done
24 Apr 2024 13:34:48,517 INFO : Inserting HLA-A2-Ctrl-Pos
24 Apr 2024 13:34:48,519 INFO : 30% Done
24 Apr 2024 13:34:48,531 INFO : 32% Done
24 Apr 2024 13:34:48,544 INFO : Inserting HLA-A2-Ctrl-Neg
24 Apr 2024 13:34:48,546 INFO : 33% Done
24 Apr 2024 13:34:48,555 INFO : 34% Done
24 Apr 2024 13:34:48,561 INFO : Inserting POC-004
24 Apr 2024 13:34:48,565 INFO : 36% Done
24 Apr 2024 13:34:48,581 INFO : 38% Done
24 Apr 2024 13:34:48,593 INFO : 39% Done
24 Apr 2024 13:34:48,603 INFO : 40% Done
24 Apr 2024 13:34:48,612 INFO : 41% Done
24 Apr 2024 13:34:48,625 INFO : 42% Done
24 Apr 2024 13:34:48,634 INFO : 43% Done
24 Apr 2024 13:34:48,643 INFO : 44% Done
24 Apr 2024 13:34:48,652 INFO : 45% Done
24 Apr 2024 13:34:48,664 INFO : 46% Done
24 Apr 2024 13:34:48,673 INFO : 47% Done
24 Apr 2024 13:34:48,683 INFO : 48% Done
24 Apr 2024 13:34:48,691 INFO : 49% Done
24 Apr 2024 13:34:48,701 INFO : 50% Done
24 Apr 2024 13:34:48,711 INFO : 51% Done
24 Apr 2024 13:34:48,721 INFO : 52% Done
24 Apr 2024 13:34:48,737 INFO : 53% Done
24 Apr 2024 13:34:48,746 INFO : 54% Done
24 Apr 2024 13:34:48,755 INFO : 55% Done
24 Apr 2024 13:34:48,764 INFO : 56% Done
24 Apr 2024 13:34:48,773 INFO : 57% Done
24 Apr 2024 13:34:48,781 INFO : 58% Done
24 Apr 2024 13:34:48,790 INFO : 59% Done
24 Apr 2024 13:34:48,799 INFO : 60% Done
24 Apr 2024 13:34:48,808 INFO : 61% Done
24 Apr 2024 13:34:48,825 INFO : 62% Done
24 Apr 2024 13:34:48,835 INFO : 65% Done
24 Apr 2024 13:34:48,849 INFO : 66% Done
24 Apr 2024 13:34:48,859 INFO : 67% Done
24 Apr 2024 13:34:48,868 INFO : 68% Done
24 Apr 2024 13:34:48,877 INFO : 69% Done
24 Apr 2024 13:34:48,886 INFO : 70% Done
24 Apr 2024 13:34:48,895 INFO : 71% Done
24 Apr 2024 13:34:48,905 INFO : 72% Done
24 Apr 2024 13:34:48,914 INFO : 73% Done
24 Apr 2024 13:34:48,930 INFO : 74% Done
24 Apr 2024 13:34:48,947 INFO : 76% Done
24 Apr 2024 13:34:48,960 INFO : 77% Done
24 Apr 2024 13:34:48,969 INFO : 78% Done
24 Apr 2024 13:34:48,986 INFO : 79% Done
24 Apr 2024 13:34:48,995 INFO : 80% Done
24 Apr 2024 13:34:49,004 INFO : 81% Done
24 Apr 2024 13:34:49,012 INFO : 82% Done
24 Apr 2024 13:34:49,021 INFO : 83% Done
24 Apr 2024 13:34:49,030 INFO : 84% Done
24 Apr 2024 13:34:49,039 INFO : 85% Done
24 Apr 2024 13:34:49,055 INFO : 86% Done
24 Apr 2024 13:34:49,065 INFO : 87% Done
24 Apr 2024 13:34:49,074 INFO : 88% Done
24 Apr 2024 13:34:49,083 INFO : 89% Done
24 Apr 2024 13:34:49,092 INFO : 90% Done
24 Apr 2024 13:34:49,100 INFO : 91% Done
24 Apr 2024 13:34:49,109 INFO : 92% Done
24 Apr 2024 13:34:49,119 INFO : 93% Done
24 Apr 2024 13:34:49,127 INFO : 94% Done
24 Apr 2024 13:34:49,145 INFO : 95% Done
24 Apr 2024 13:34:49,154 INFO : 96% Done
24 Apr 2024 13:34:49,163 INFO : 97% Done
24 Apr 2024 13:34:49,172 INFO : 98% Done
24 Apr 2024 13:34:49,181 INFO : Done parsing Skyline document.
24 Apr 2024 13:34:49,181 INFO : Creating and populating temp tables for Proportion values
24 Apr 2024 13:34:49,188 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
24 Apr 2024 13:34:49,206 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
24 Apr 2024 13:34:49,221 INFO : Cleaning up temp tables
24 Apr 2024 13:34:49,491 INFO : Completed import of Skyline document from id_all_2024-04-23_13-30-06.sky.zip
24 Apr 2024 13:34:49,492 INFO : 100% Done
24 Apr 2024 13:34:49,512 INFO : Done importing xar
24 Apr 2024 13:34:49,513 INFO : Loading pages and webpart properties
24 Apr 2024 13:34:49,575 INFO : Done importing 3 page(s) with 5 webpart(s)
24 Apr 2024 13:34:49,575 INFO : Loading File Browser config
24 Apr 2024 13:34:49,575 INFO : Done importing File Browser config
24 Apr 2024 13:34:49,576 INFO : Starting Sample Status Data import
24 Apr 2024 13:34:49,577 INFO : No sample types XAR file to process.
24 Apr 2024 13:34:49,577 INFO : Finished importing Sample Status Data
24 Apr 2024 13:34:49,582 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
24 Apr 2024 13:34:49,586 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
24 Apr 2024 13:34:49,587 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
24 Apr 2024 13:34:49,587 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
24 Apr 2024 13:34:49,588 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
24 Apr 2024 13:34:49,589 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
24 Apr 2024 13:34:49,591 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
24 Apr 2024 13:34:49,600 INFO : Moving files to folder /Panorama Public/2024/German Cancer Research Center Division of Immunotherapy and Immunoprevention - optiPRM and creating symlinks
24 Apr 2024 13:34:49,727 INFO : Aligning data files urls in folder: /Panorama Public/2024/German Cancer Research Center Division of Immunotherapy and Immunoprevention - optiPRM
24 Apr 2024 13:34:49,758 INFO : Importing files metadata.
24 Apr 2024 13:34:49,759 INFO :
24 Apr 2024 13:34:49,759 INFO : Experiment import completed successfully.
24 Apr 2024 13:34:49,759 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
24 Apr 2024 13:34:49,783 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
24 Apr 2024 13:34:49,783 INFO :
24 Apr 2024 13:34:49,783 INFO : Checking for library folders.
24 Apr 2024 13:34:49,784 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
24 Apr 2024 13:34:49,803 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
24 Apr 2024 13:34:49,803 INFO :
24 Apr 2024 13:34:49,803 INFO : Finishing up experiment copy.
24 Apr 2024 13:34:49,805 INFO : Updating TargetedMS experiment entry in target folder /Panorama Public/2024/German Cancer Research Center Division of Immunotherapy and Immunoprevention - optiPRM
24 Apr 2024 13:34:49,806 INFO : Setting version on new experiment to 1
24 Apr 2024 13:34:49,808 INFO : Updating permanent link to point to the new copy of the data.
24 Apr 2024 13:34:49,831 INFO : Removing copy permissions given to Panorama Public
24 Apr 2024 13:34:49,833 INFO : Adding read permissions to all users that are folder admins in the source folder.
24 Apr 2024 13:34:49,835 INFO : Assigning ReaderRole to jonas01.becker@dkfz-heidelberg.de
24 Apr 2024 13:34:49,835 INFO : Assigning PanoramaPublicSubmitterRole to jonas01.becker@dkfz-heidelberg.de
24 Apr 2024 13:34:49,840 INFO : Adding user jonas01.becker@dkfz-heidelberg.de to group Panorama Public Submitters
24 Apr 2024 13:34:49,841 INFO : Updating the 'Raw Data' tab configuration
24 Apr 2024 13:34:49,844 INFO : Creating a reviewer account.
24 Apr 2024 13:34:49,906 INFO : Created reviewer with email: panorama+reviewer255@proteinms.net
24 Apr 2024 13:34:49,906 INFO : Generating password.
24 Apr 2024 13:34:50,037 INFO : Set reviewer password successfully.
24 Apr 2024 13:34:50,045 INFO : Adding user panorama+reviewer255@proteinms.net to group Reviewers
24 Apr 2024 13:34:50,046 INFO : Hiding the Data Pipeline tab.
24 Apr 2024 13:34:50,051 INFO : Updating Submission. Setting copiedExperimentId to 1801
24 Apr 2024 13:34:52,080 INFO : Assigning a DOI.
24 Apr 2024 13:34:53,758 INFO : Assigned DOI: 10.6069/j69q-qa52
24 Apr 2024 13:34:53,880 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'