Copying experiment: An optimized and robust workflow for quantifying the canonical histone ubiquitination marks H2AK119ub and H2BK120ub by LC-MS/MS

Case Western Reserve U Lund Lab - 2024_HistoneUb

Log File


18 Jun 2024 13:55:02,440 INFO : Copying experiment "An optimized and robust workflow for quantifying the canonical histone ubiquitination marks H2AK119ub and H2BK120ub by LC-MS/MS" from folder /Case Western Reserve U - Lund Lab/2024_HistoneUb to /Panorama Public/2024/Case Western Reserve U Lund Lab - 2024_HistoneUb
18 Jun 2024 13:55:02,440 INFO : =======================================
18 Jun 2024 13:55:02,475 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
18 Jun 2024 13:55:02,475 INFO :
18 Jun 2024 13:55:02,475 INFO : Exporting experiment.
18 Jun 2024 13:55:12,043 INFO : Exporting files metadata.
18 Jun 2024 13:55:12,209 INFO :
18 Jun 2024 13:55:12,209 INFO : Experiment export completed successfully.
18 Jun 2024 13:55:12,210 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
18 Jun 2024 13:55:12,229 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
18 Jun 2024 13:55:12,229 INFO :
18 Jun 2024 13:55:12,229 INFO : Importing experiment.
18 Jun 2024 13:55:12,231 INFO : Loading folder properties (folder type, settings and active modules)
18 Jun 2024 13:55:12,308 INFO : Done importing folder properties (folder type, settings and active modules)
18 Jun 2024 13:55:12,309 INFO : Loading container specific module properties
18 Jun 2024 13:55:12,312 INFO : Done importing container specific module properties
18 Jun 2024 13:55:12,313 INFO : Loading queries
18 Jun 2024 13:55:12,316 INFO : 1 query imported
18 Jun 2024 13:55:12,316 INFO : Done importing queries
18 Jun 2024 13:55:12,317 INFO : Loading etl definitions
18 Jun 2024 13:55:12,318 INFO : Loading wikis
18 Jun 2024 13:55:12,320 INFO : 0 wikis imported
18 Jun 2024 13:55:12,320 INFO : Done importing wikis
18 Jun 2024 13:55:12,321 INFO : Starting Data Class Importer
18 Jun 2024 13:55:12,322 INFO : No types XAR file to process.
18 Jun 2024 13:55:12,322 INFO : Finished Data Class Importer
18 Jun 2024 13:55:12,322 INFO : Starting to copy files
18 Jun 2024 13:55:12,322 INFO : Copied 0 files
18 Jun 2024 13:55:12,322 INFO : Ensuring exp.data rows exist for imported files
18 Jun 2024 13:55:13,001 INFO : Starting Sample Type Importer
18 Jun 2024 13:55:13,001 INFO : No types XAR file to process.
18 Jun 2024 13:55:13,001 INFO : Finished Sample Type Importer
18 Jun 2024 13:55:13,003 INFO : Loading xar
18 Jun 2024 13:55:13,027 INFO : Done importing xar
18 Jun 2024 13:55:13,028 INFO : Loading pages and webpart properties
18 Jun 2024 13:55:13,091 INFO : Done importing 3 page(s) with 5 webpart(s)
18 Jun 2024 13:55:13,091 INFO : Loading File Browser config
18 Jun 2024 13:55:13,091 INFO : Done importing File Browser config
18 Jun 2024 13:55:13,092 INFO : Starting Sample Status Data import
18 Jun 2024 13:55:13,092 INFO : No sample types XAR file to process.
18 Jun 2024 13:55:13,092 INFO : Finished importing Sample Status Data
18 Jun 2024 13:55:13,096 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
18 Jun 2024 13:55:13,099 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
18 Jun 2024 13:55:13,099 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
18 Jun 2024 13:55:13,100 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
18 Jun 2024 13:55:13,100 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
18 Jun 2024 13:55:13,100 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
18 Jun 2024 13:55:13,101 INFO : Loading subfolders and container tabs
18 Jun 2024 13:55:13,167 INFO : New folder created with inherited permissions: /Panorama Public/2024/Case Western Reserve U Lund Lab - 2024_HistoneUb/Fig01_Synthetic_Spikes
18 Jun 2024 13:55:13,167 INFO : Loading folder archive for Fig01_Synthetic_Spikes
18 Jun 2024 13:55:13,168 INFO : Loading folder properties (folder type, settings and active modules)
18 Jun 2024 13:55:13,240 INFO : Done importing folder properties (folder type, settings and active modules)
18 Jun 2024 13:55:13,241 INFO : Loading container specific module properties
18 Jun 2024 13:55:13,245 INFO : Done importing container specific module properties
18 Jun 2024 13:55:13,246 INFO : Loading queries
18 Jun 2024 13:55:13,249 INFO : 1 query imported
18 Jun 2024 13:55:13,249 INFO : Done importing queries
18 Jun 2024 13:55:13,250 INFO : Loading etl definitions
18 Jun 2024 13:55:13,251 INFO : Loading wikis
18 Jun 2024 13:55:13,252 INFO : 0 wikis imported
18 Jun 2024 13:55:13,252 INFO : Done importing wikis
18 Jun 2024 13:55:13,253 INFO : Starting Data Class Importer
18 Jun 2024 13:55:13,253 INFO : No types XAR file to process.
18 Jun 2024 13:55:13,253 INFO : Finished Data Class Importer
18 Jun 2024 13:55:13,254 INFO : Starting to copy files
18 Jun 2024 13:55:13,254 INFO : Copied 0 files
18 Jun 2024 13:55:13,254 INFO : Ensuring exp.data rows exist for imported files
18 Jun 2024 13:55:13,258 INFO : Starting Sample Type Importer
18 Jun 2024 13:55:13,259 INFO : No types XAR file to process.
18 Jun 2024 13:55:13,259 INFO : Finished Sample Type Importer
18 Jun 2024 13:55:13,260 INFO : Loading xar
18 Jun 2024 13:55:13,565 INFO : Starting import from 01_20191216_HEK_histoneUB_noProp_2024-06-12_14-50-33.sky.zip
18 Jun 2024 13:55:13,568 INFO : Starting to import Skyline document from 01_20191216_HEK_histoneUB_noProp_2024-06-12_14-50-33.sky.zip
18 Jun 2024 13:55:13,569 INFO : Expanding 01_20191216_HEK_histoneUB_noProp.skyd
18 Jun 2024 13:55:13,717 INFO : Expanding 01_20191216_HEK_histoneUB_noProp.sky.view
18 Jun 2024 13:55:13,718 INFO : Expanding 01_20191216_HEK_histoneUB_noProp.sky
18 Jun 2024 13:55:13,725 INFO : 3% Done
18 Jun 2024 13:55:14,088 INFO : Inserting Ub01_H2A_common13
18 Jun 2024 13:55:14,099 INFO : 8% Done
18 Jun 2024 13:55:14,152 INFO : 12% Done
18 Jun 2024 13:55:14,190 INFO : Inserting Ub02_H2A_common13
18 Jun 2024 13:55:14,201 INFO : 17% Done
18 Jun 2024 13:55:14,247 INFO : 22% Done
18 Jun 2024 13:55:14,293 INFO : 25% Done
18 Jun 2024 13:55:14,328 INFO : 27% Done
18 Jun 2024 13:55:14,351 INFO : 30% Done
18 Jun 2024 13:55:14,374 INFO : Inserting Ub03_H2A_common13
18 Jun 2024 13:55:14,385 INFO : 34% Done
18 Jun 2024 13:55:14,431 INFO : 38% Done
18 Jun 2024 13:55:14,466 INFO : 39% Done
18 Jun 2024 13:55:14,466 INFO : Inserting Ub04_H2A_common24
18 Jun 2024 13:55:14,477 INFO : 42% Done
18 Jun 2024 13:55:14,532 INFO : 50% Done
18 Jun 2024 13:55:14,598 INFO : Inserting Ub06_H2A_common24
18 Jun 2024 13:55:14,610 INFO : 54% Done
18 Jun 2024 13:55:14,654 INFO : 59% Done
18 Jun 2024 13:55:14,690 INFO : Inserting Ub08_H2B_SAK
18 Jun 2024 13:55:14,696 INFO : 62% Done
18 Jun 2024 13:55:14,719 INFO : Inserting Ub09_H2B_SSK
18 Jun 2024 13:55:14,725 INFO : 65% Done
18 Jun 2024 13:55:14,748 INFO : Inserting Ub10_H2B_SSK
18 Jun 2024 13:55:14,753 INFO : 68% Done
18 Jun 2024 13:55:14,785 INFO : 71% Done
18 Jun 2024 13:55:14,824 INFO : 75% Done
18 Jun 2024 13:55:14,854 INFO : 77% Done
18 Jun 2024 13:55:14,874 INFO : 80% Done
18 Jun 2024 13:55:14,905 INFO : Done parsing Skyline document.
18 Jun 2024 13:55:14,966 INFO : Calculating fold changes
18 Jun 2024 13:55:15,573 INFO : 98% Done
18 Jun 2024 13:55:15,573 INFO : Done calculating fold changes.
18 Jun 2024 13:55:15,574 INFO : Creating and populating temp tables for Proportion values
18 Jun 2024 13:55:15,580 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
18 Jun 2024 13:55:15,592 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
18 Jun 2024 13:55:15,595 INFO : Cleaning up temp tables
18 Jun 2024 13:55:15,914 INFO : Completed import of Skyline document from 01_20191216_HEK_histoneUB_noProp_2024-06-12_14-50-33.sky.zip
18 Jun 2024 13:55:15,916 INFO : 100% Done
18 Jun 2024 13:55:15,924 INFO : Done importing xar
18 Jun 2024 13:55:15,925 INFO : Loading pages and webpart properties
18 Jun 2024 13:55:16,006 INFO : Done importing 4 page(s) with 6 webpart(s)
18 Jun 2024 13:55:16,006 INFO : Loading File Browser config
18 Jun 2024 13:55:16,006 INFO : Done importing File Browser config
18 Jun 2024 13:55:16,007 INFO : Starting Sample Status Data import
18 Jun 2024 13:55:16,007 INFO : No sample types XAR file to process.
18 Jun 2024 13:55:16,007 INFO : Finished importing Sample Status Data
18 Jun 2024 13:55:16,011 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
18 Jun 2024 13:55:16,013 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
18 Jun 2024 13:55:16,014 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
18 Jun 2024 13:55:16,014 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
18 Jun 2024 13:55:16,015 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
18 Jun 2024 13:55:16,015 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
18 Jun 2024 13:55:16,017 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
18 Jun 2024 13:55:16,021 INFO : Adding runs imported in subfolders.
18 Jun 2024 13:55:16,029 INFO : Moving files to folder /Panorama Public/2024/Case Western Reserve U Lund Lab - 2024_HistoneUb/Fig01_Synthetic_Spikes and creating symlinks
18 Jun 2024 13:55:16,053 INFO : Aligning data files urls in folder: /Panorama Public/2024/Case Western Reserve U Lund Lab - 2024_HistoneUb/Fig01_Synthetic_Spikes
18 Jun 2024 13:55:16,058 INFO : Done importing folder archive for Fig01_Synthetic_Spikes
18 Jun 2024 13:55:16,117 INFO : New folder created with inherited permissions: /Panorama Public/2024/Case Western Reserve U Lund Lab - 2024_HistoneUb/Fig02_Synthetic_Propionyl
18 Jun 2024 13:55:16,117 INFO : Loading folder archive for Fig02_Synthetic_Propionyl
18 Jun 2024 13:55:16,118 INFO : Loading folder properties (folder type, settings and active modules)
18 Jun 2024 13:55:16,177 INFO : Done importing folder properties (folder type, settings and active modules)
18 Jun 2024 13:55:16,179 INFO : Loading container specific module properties
18 Jun 2024 13:55:16,182 INFO : Done importing container specific module properties
18 Jun 2024 13:55:16,184 INFO : Loading queries
18 Jun 2024 13:55:16,186 INFO : 1 query imported
18 Jun 2024 13:55:16,187 INFO : Done importing queries
18 Jun 2024 13:55:16,188 INFO : Loading etl definitions
18 Jun 2024 13:55:16,190 INFO : Loading wikis
18 Jun 2024 13:55:16,191 INFO : 0 wikis imported
18 Jun 2024 13:55:16,191 INFO : Done importing wikis
18 Jun 2024 13:55:16,193 INFO : Starting Data Class Importer
18 Jun 2024 13:55:16,193 INFO : No types XAR file to process.
18 Jun 2024 13:55:16,193 INFO : Finished Data Class Importer
18 Jun 2024 13:55:16,194 INFO : Starting to copy files
18 Jun 2024 13:55:16,194 INFO : Copied 0 files
18 Jun 2024 13:55:16,194 INFO : Ensuring exp.data rows exist for imported files
18 Jun 2024 13:55:16,198 INFO : Starting Sample Type Importer
18 Jun 2024 13:55:16,198 INFO : No types XAR file to process.
18 Jun 2024 13:55:16,198 INFO : Finished Sample Type Importer
18 Jun 2024 13:55:16,199 INFO : Loading xar
18 Jun 2024 13:55:16,416 INFO : Starting import from 02_20200128_UBsyntheticsDigestPro_2024-06-12_21-44-53.sky.zip
18 Jun 2024 13:55:16,419 INFO : Starting to import Skyline document from 02_20200128_UBsyntheticsDigestPro_2024-06-12_21-44-53.sky.zip
18 Jun 2024 13:55:16,420 INFO : Expanding 02_20200128_UBsyntheticsDigestPro.skyd
18 Jun 2024 13:55:16,524 INFO : Expanding 02_20200128_UBsyntheticsDigestPro.sky.view
18 Jun 2024 13:55:16,525 INFO : Expanding 02_20200128_UBsyntheticsDigestPro.sky
18 Jun 2024 13:55:16,531 INFO : 2% Done
18 Jun 2024 13:55:16,721 INFO : 3% Done
18 Jun 2024 13:55:16,721 INFO : Inserting Ub02_H2A_common13_noPropionyl
18 Jun 2024 13:55:16,723 INFO : 6% Done
18 Jun 2024 13:55:16,738 INFO : 10% Done
18 Jun 2024 13:55:16,754 INFO : 15% Done
18 Jun 2024 13:55:16,769 INFO : 18% Done
18 Jun 2024 13:55:16,779 INFO : 23% Done
18 Jun 2024 13:55:16,793 INFO : 25% Done
18 Jun 2024 13:55:16,802 INFO : 26% Done
18 Jun 2024 13:55:16,802 INFO : Inserting Ub02_H2A_common13_Propionyl
18 Jun 2024 13:55:16,804 INFO : 29% Done
18 Jun 2024 13:55:16,821 INFO : 32% Done
18 Jun 2024 13:55:16,843 INFO : 39% Done
18 Jun 2024 13:55:16,866 INFO : 42% Done
18 Jun 2024 13:55:16,878 INFO : 46% Done
18 Jun 2024 13:55:16,889 INFO : 48% Done
18 Jun 2024 13:55:16,897 INFO : 51% Done
18 Jun 2024 13:55:16,905 INFO : Inserting Ub10_H2B_SSK_noPropionyl
18 Jun 2024 13:55:16,907 INFO : 54% Done
18 Jun 2024 13:55:16,924 INFO : 58% Done
18 Jun 2024 13:55:16,938 INFO : 60% Done
18 Jun 2024 13:55:16,949 INFO : 62% Done
18 Jun 2024 13:55:16,957 INFO : 65% Done
18 Jun 2024 13:55:16,964 INFO : 66% Done
18 Jun 2024 13:55:16,964 INFO : Inserting Ub10_H2B_SSK_Propionyl
18 Jun 2024 13:55:16,966 INFO : 68% Done
18 Jun 2024 13:55:16,981 INFO : 72% Done
18 Jun 2024 13:55:16,995 INFO : 75% Done
18 Jun 2024 13:55:17,007 INFO : 78% Done
18 Jun 2024 13:55:17,017 INFO : 80% Done
18 Jun 2024 13:55:17,025 INFO : Done parsing Skyline document.
18 Jun 2024 13:55:17,087 INFO : Calculating fold changes
18 Jun 2024 13:55:17,294 INFO : 98% Done
18 Jun 2024 13:55:17,295 INFO : Done calculating fold changes.
18 Jun 2024 13:55:17,295 INFO : Creating and populating temp tables for Proportion values
18 Jun 2024 13:55:17,300 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
18 Jun 2024 13:55:17,308 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
18 Jun 2024 13:55:17,315 INFO : Cleaning up temp tables
18 Jun 2024 13:55:17,615 INFO : Completed import of Skyline document from 02_20200128_UBsyntheticsDigestPro_2024-06-12_21-44-53.sky.zip
18 Jun 2024 13:55:17,617 INFO : 100% Done
18 Jun 2024 13:55:17,628 INFO : Done importing xar
18 Jun 2024 13:55:17,630 INFO : Loading pages and webpart properties
18 Jun 2024 13:55:17,712 INFO : Done importing 4 page(s) with 6 webpart(s)
18 Jun 2024 13:55:17,712 INFO : Loading File Browser config
18 Jun 2024 13:55:17,712 INFO : Done importing File Browser config
18 Jun 2024 13:55:17,713 INFO : Starting Sample Status Data import
18 Jun 2024 13:55:17,713 INFO : No sample types XAR file to process.
18 Jun 2024 13:55:17,713 INFO : Finished importing Sample Status Data
18 Jun 2024 13:55:17,717 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
18 Jun 2024 13:55:17,720 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
18 Jun 2024 13:55:17,720 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
18 Jun 2024 13:55:17,720 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
18 Jun 2024 13:55:17,721 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
18 Jun 2024 13:55:17,721 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
18 Jun 2024 13:55:17,722 INFO : Moving files to folder /Panorama Public/2024/Case Western Reserve U Lund Lab - 2024_HistoneUb/Fig02_Synthetic_Propionyl and creating symlinks
18 Jun 2024 13:55:17,759 INFO : Aligning data files urls in folder: /Panorama Public/2024/Case Western Reserve U Lund Lab - 2024_HistoneUb/Fig02_Synthetic_Propionyl
18 Jun 2024 13:55:17,765 INFO : Done importing folder archive for Fig02_Synthetic_Propionyl
18 Jun 2024 13:55:17,827 INFO : New folder created with inherited permissions: /Panorama Public/2024/Case Western Reserve U Lund Lab - 2024_HistoneUb/Fig03_ms2
18 Jun 2024 13:55:17,827 INFO : Loading folder archive for Fig03_ms2
18 Jun 2024 13:55:17,829 INFO : Loading folder properties (folder type, settings and active modules)
18 Jun 2024 13:55:17,893 INFO : Done importing folder properties (folder type, settings and active modules)
18 Jun 2024 13:55:17,894 INFO : Loading container specific module properties
18 Jun 2024 13:55:17,897 INFO : Done importing container specific module properties
18 Jun 2024 13:55:17,898 INFO : Loading queries
18 Jun 2024 13:55:17,901 INFO : 1 query imported
18 Jun 2024 13:55:17,901 INFO : Done importing queries
18 Jun 2024 13:55:17,902 INFO : Loading etl definitions
18 Jun 2024 13:55:17,903 INFO : Loading wikis
18 Jun 2024 13:55:17,904 INFO : 0 wikis imported
18 Jun 2024 13:55:17,904 INFO : Done importing wikis
18 Jun 2024 13:55:17,906 INFO : Starting Data Class Importer
18 Jun 2024 13:55:17,906 INFO : No types XAR file to process.
18 Jun 2024 13:55:17,906 INFO : Finished Data Class Importer
18 Jun 2024 13:55:17,907 INFO : Starting to copy files
18 Jun 2024 13:55:17,907 INFO : Copied 0 files
18 Jun 2024 13:55:17,907 INFO : Ensuring exp.data rows exist for imported files
18 Jun 2024 13:55:17,911 INFO : Starting Sample Type Importer
18 Jun 2024 13:55:17,911 INFO : No types XAR file to process.
18 Jun 2024 13:55:17,911 INFO : Finished Sample Type Importer
18 Jun 2024 13:55:17,912 INFO : Loading xar
18 Jun 2024 13:55:18,097 INFO : Starting import from 03_20210220_HEK_histonesUB_2024-06-12_22-15-45.sky.zip
18 Jun 2024 13:55:18,100 INFO : Starting to import Skyline document from 03_20210220_HEK_histonesUB_2024-06-12_22-15-45.sky.zip
18 Jun 2024 13:55:18,100 INFO : Expanding 03_20210220_HEK_histonesUB.skyd
18 Jun 2024 13:55:18,173 INFO : Expanding 03_20210220_HEK_histonesUB.sky.view
18 Jun 2024 13:55:18,173 INFO : Expanding 03_20210220_HEK_histonesUB.sky
18 Jun 2024 13:55:18,181 INFO : 10% Done
18 Jun 2024 13:55:18,350 INFO : Inserting Ub02_H2A_common13
18 Jun 2024 13:55:18,354 INFO : 24% Done
18 Jun 2024 13:55:18,370 INFO : 39% Done
18 Jun 2024 13:55:18,384 INFO : 42% Done
18 Jun 2024 13:55:18,384 INFO : Inserting Ub09_H2B_SSK
18 Jun 2024 13:55:18,389 INFO : 61% Done
18 Jun 2024 13:55:18,407 INFO : 80% Done
18 Jun 2024 13:55:18,425 INFO : Done parsing Skyline document.
18 Jun 2024 13:55:18,487 INFO : Calculating fold changes
18 Jun 2024 13:55:18,527 INFO : 98% Done
18 Jun 2024 13:55:18,527 INFO : Done calculating fold changes.
18 Jun 2024 13:55:18,528 INFO : Creating and populating temp tables for Proportion values
18 Jun 2024 13:55:18,532 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
18 Jun 2024 13:55:18,533 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
18 Jun 2024 13:55:18,534 INFO : Cleaning up temp tables
18 Jun 2024 13:55:18,829 INFO : Completed import of Skyline document from 03_20210220_HEK_histonesUB_2024-06-12_22-15-45.sky.zip
18 Jun 2024 13:55:18,832 INFO : 100% Done
18 Jun 2024 13:55:18,842 INFO : Done importing xar
18 Jun 2024 13:55:18,843 INFO : Loading pages and webpart properties
18 Jun 2024 13:55:18,928 INFO : Done importing 4 page(s) with 6 webpart(s)
18 Jun 2024 13:55:18,928 INFO : Loading File Browser config
18 Jun 2024 13:55:18,928 INFO : Done importing File Browser config
18 Jun 2024 13:55:18,930 INFO : Starting Sample Status Data import
18 Jun 2024 13:55:18,930 INFO : No sample types XAR file to process.
18 Jun 2024 13:55:18,930 INFO : Finished importing Sample Status Data
18 Jun 2024 13:55:18,935 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
18 Jun 2024 13:55:18,937 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
18 Jun 2024 13:55:18,937 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
18 Jun 2024 13:55:18,938 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
18 Jun 2024 13:55:18,938 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
18 Jun 2024 13:55:18,938 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
18 Jun 2024 13:55:18,939 INFO : Moving files to folder /Panorama Public/2024/Case Western Reserve U Lund Lab - 2024_HistoneUb/Fig03_ms2 and creating symlinks
18 Jun 2024 13:55:18,979 INFO : Aligning data files urls in folder: /Panorama Public/2024/Case Western Reserve U Lund Lab - 2024_HistoneUb/Fig03_ms2
18 Jun 2024 13:55:18,985 INFO : Done importing folder archive for Fig03_ms2
18 Jun 2024 13:55:19,048 INFO : New folder created with inherited permissions: /Panorama Public/2024/Case Western Reserve U Lund Lab - 2024_HistoneUb/Fig04_Isotopes
18 Jun 2024 13:55:19,048 INFO : Loading folder archive for Fig04_Isotopes
18 Jun 2024 13:55:19,049 INFO : Loading folder properties (folder type, settings and active modules)
18 Jun 2024 13:55:19,118 INFO : Done importing folder properties (folder type, settings and active modules)
18 Jun 2024 13:55:19,119 INFO : Loading container specific module properties
18 Jun 2024 13:55:19,122 INFO : Done importing container specific module properties
18 Jun 2024 13:55:19,123 INFO : Loading queries
18 Jun 2024 13:55:19,126 INFO : 1 query imported
18 Jun 2024 13:55:19,126 INFO : Done importing queries
18 Jun 2024 13:55:19,127 INFO : Loading etl definitions
18 Jun 2024 13:55:19,128 INFO : Loading wikis
18 Jun 2024 13:55:19,130 INFO : 0 wikis imported
18 Jun 2024 13:55:19,130 INFO : Done importing wikis
18 Jun 2024 13:55:19,131 INFO : Starting Data Class Importer
18 Jun 2024 13:55:19,131 INFO : No types XAR file to process.
18 Jun 2024 13:55:19,131 INFO : Finished Data Class Importer
18 Jun 2024 13:55:19,132 INFO : Starting to copy files
18 Jun 2024 13:55:19,132 INFO : Copied 0 files
18 Jun 2024 13:55:19,132 INFO : Ensuring exp.data rows exist for imported files
18 Jun 2024 13:55:19,136 INFO : Starting Sample Type Importer
18 Jun 2024 13:55:19,137 INFO : No types XAR file to process.
18 Jun 2024 13:55:19,137 INFO : Finished Sample Type Importer
18 Jun 2024 13:55:19,138 INFO : Loading xar
18 Jun 2024 13:55:19,202 INFO : Starting import from 20200625_QE_pr0pr5_IsoQuant_w2m_v2_2024-06-18_10-17-43.sky.zip
18 Jun 2024 13:55:19,205 INFO : Starting to import Skyline document from 20200625_QE_pr0pr5_IsoQuant_w2m_v2_2024-06-18_10-17-43.sky.zip
18 Jun 2024 13:55:19,206 INFO : Expanding 20200625_QE_pr0pr5_IsoQuant_w2m_v2.skyd
18 Jun 2024 13:55:19,219 INFO : Expanding 20200625_QE_pr0pr5_IsoQuant_w2m_v2.sky.view
18 Jun 2024 13:55:19,220 INFO : Expanding 20200625_QE_pr0pr5_IsoQuant_w2m_v2.sky
18 Jun 2024 13:55:19,226 INFO : 2% Done
18 Jun 2024 13:55:19,463 INFO : Inserting H2A_shared_all_HUMAN
18 Jun 2024 13:55:19,474 INFO : 12% Done
18 Jun 2024 13:55:19,516 INFO : Inserting H2A_specific_common1_HUMAN
18 Jun 2024 13:55:19,525 INFO : 21% Done
18 Jun 2024 13:55:19,559 INFO : Inserting H2A_specific_common3_HUMAN
18 Jun 2024 13:55:19,566 INFO : 28% Done
18 Jun 2024 13:55:19,598 INFO : Inserting H2A_specific_common4_HUMAN
18 Jun 2024 13:55:19,607 INFO : 36% Done
18 Jun 2024 13:55:19,645 INFO : Inserting H2AX_specific_HUMAN_P16104
18 Jun 2024 13:55:19,653 INFO : 42% Done
18 Jun 2024 13:55:19,682 INFO : Inserting H2B_shared_all_HUMAN
18 Jun 2024 13:55:19,694 INFO : 52% Done
18 Jun 2024 13:55:19,738 INFO : 59% Done
18 Jun 2024 13:55:19,773 INFO : 68% Done
18 Jun 2024 13:55:19,809 INFO : Inserting H2B_specific_common1_HUMAN
18 Jun 2024 13:55:19,817 INFO : 74% Done
18 Jun 2024 13:55:19,845 INFO : Inserting H2B_specific_common2_HUMAN
18 Jun 2024 13:55:19,853 INFO : 80% Done
18 Jun 2024 13:55:19,881 INFO : Done parsing Skyline document.
18 Jun 2024 13:55:19,948 INFO : Calculating fold changes
18 Jun 2024 13:55:20,083 INFO : 98% Done
18 Jun 2024 13:55:20,083 INFO : Done calculating fold changes.
18 Jun 2024 13:55:20,084 INFO : Creating and populating temp tables for Proportion values
18 Jun 2024 13:55:20,090 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
18 Jun 2024 13:55:20,099 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
18 Jun 2024 13:55:20,102 INFO : Cleaning up temp tables
18 Jun 2024 13:55:20,408 INFO : Completed import of Skyline document from 20200625_QE_pr0pr5_IsoQuant_w2m_v2_2024-06-18_10-17-43.sky.zip
18 Jun 2024 13:55:20,411 INFO : 100% Done
18 Jun 2024 13:55:20,427 INFO : Done importing xar
18 Jun 2024 13:55:20,428 INFO : Loading pages and webpart properties
18 Jun 2024 13:55:20,524 INFO : Done importing 3 page(s) with 5 webpart(s)
18 Jun 2024 13:55:20,524 INFO : Loading File Browser config
18 Jun 2024 13:55:20,524 INFO : Done importing File Browser config
18 Jun 2024 13:55:20,526 INFO : Starting Sample Status Data import
18 Jun 2024 13:55:20,526 INFO : No sample types XAR file to process.
18 Jun 2024 13:55:20,526 INFO : Finished importing Sample Status Data
18 Jun 2024 13:55:20,531 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
18 Jun 2024 13:55:20,533 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
18 Jun 2024 13:55:20,533 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
18 Jun 2024 13:55:20,534 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
18 Jun 2024 13:55:20,534 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
18 Jun 2024 13:55:20,534 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
18 Jun 2024 13:55:20,535 INFO : Moving files to folder /Panorama Public/2024/Case Western Reserve U Lund Lab - 2024_HistoneUb/Fig04_Isotopes and creating symlinks
18 Jun 2024 13:55:20,571 INFO : Aligning data files urls in folder: /Panorama Public/2024/Case Western Reserve U Lund Lab - 2024_HistoneUb/Fig04_Isotopes
18 Jun 2024 13:55:20,576 INFO : Done importing folder archive for Fig04_Isotopes
18 Jun 2024 13:55:20,638 INFO : New folder created with inherited permissions: /Panorama Public/2024/Case Western Reserve U Lund Lab - 2024_HistoneUb/Fig05_H2B_peptide_spike
18 Jun 2024 13:55:20,638 INFO : Loading folder archive for Fig05_H2B_peptide_spike
18 Jun 2024 13:55:20,640 INFO : Loading folder properties (folder type, settings and active modules)
18 Jun 2024 13:55:20,713 INFO : Done importing folder properties (folder type, settings and active modules)
18 Jun 2024 13:55:20,715 INFO : Loading container specific module properties
18 Jun 2024 13:55:20,718 INFO : Done importing container specific module properties
18 Jun 2024 13:55:20,719 INFO : Loading queries
18 Jun 2024 13:55:20,723 INFO : 1 query imported
18 Jun 2024 13:55:20,723 INFO : Done importing queries
18 Jun 2024 13:55:20,724 INFO : Loading etl definitions
18 Jun 2024 13:55:20,725 INFO : Loading wikis
18 Jun 2024 13:55:20,726 INFO : 0 wikis imported
18 Jun 2024 13:55:20,726 INFO : Done importing wikis
18 Jun 2024 13:55:20,727 INFO : Starting Data Class Importer
18 Jun 2024 13:55:20,728 INFO : No types XAR file to process.
18 Jun 2024 13:55:20,728 INFO : Finished Data Class Importer
18 Jun 2024 13:55:20,728 INFO : Starting to copy files
18 Jun 2024 13:55:20,728 INFO : Copied 0 files
18 Jun 2024 13:55:20,728 INFO : Ensuring exp.data rows exist for imported files
18 Jun 2024 13:55:20,733 INFO : Starting Sample Type Importer
18 Jun 2024 13:55:20,733 INFO : No types XAR file to process.
18 Jun 2024 13:55:20,733 INFO : Finished Sample Type Importer
18 Jun 2024 13:55:20,734 INFO : Loading xar
18 Jun 2024 13:55:21,148 INFO : Starting import from sim_ssk_h2b_synthetic_qehf_pr0pr5_v03_2024-06-18_10-26-19.sky.zip
18 Jun 2024 13:55:21,150 INFO : Starting to import Skyline document from sim_ssk_h2b_synthetic_qehf_pr0pr5_v03_2024-06-18_10-26-19.sky.zip
18 Jun 2024 13:55:21,151 INFO : Expanding sim_ssk_h2b_synthetic_qehf_pr0pr5_v03.skyd
18 Jun 2024 13:55:21,249 INFO : Expanding sim_ssk_h2b_synthetic_qehf_pr0pr5_v03.sky.view
18 Jun 2024 13:55:21,249 INFO : Expanding sim_ssk_h2b_synthetic_qehf_pr0pr5_v03.sky
18 Jun 2024 13:55:21,255 INFO : 7% Done
18 Jun 2024 13:55:21,475 INFO : Inserting H2B_shared_all_HUMAN
18 Jun 2024 13:55:21,486 INFO : 39% Done
18 Jun 2024 13:55:21,546 INFO : Inserting H2B_specific_common1_HUMAN
18 Jun 2024 13:55:21,554 INFO : 62% Done
18 Jun 2024 13:55:21,598 INFO : Inserting H2B_specific_common2_HUMAN
18 Jun 2024 13:55:21,609 INFO : 80% Done
18 Jun 2024 13:55:21,649 INFO : Done parsing Skyline document.
18 Jun 2024 13:55:21,711 INFO : Calculating fold changes
18 Jun 2024 13:55:21,757 INFO : 98% Done
18 Jun 2024 13:55:21,757 INFO : Done calculating fold changes.
18 Jun 2024 13:55:21,758 INFO : Creating and populating temp tables for Proportion values
18 Jun 2024 13:55:21,762 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
18 Jun 2024 13:55:21,767 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
18 Jun 2024 13:55:21,768 INFO : Cleaning up temp tables
18 Jun 2024 13:55:22,062 INFO : Completed import of Skyline document from sim_ssk_h2b_synthetic_qehf_pr0pr5_v03_2024-06-18_10-26-19.sky.zip
18 Jun 2024 13:55:22,064 INFO : 100% Done
18 Jun 2024 13:55:22,072 INFO : Starting import from sim_h2b_synthetic_qehf_pr0pr5_v03_2024-06-18_10-27-02.sky.zip
18 Jun 2024 13:55:22,073 INFO : Starting to import Skyline document from sim_h2b_synthetic_qehf_pr0pr5_v03_2024-06-18_10-27-02.sky.zip
18 Jun 2024 13:55:22,074 INFO : Expanding sim_h2b_synthetic_qehf_pr0pr5_v03.skyd
18 Jun 2024 13:55:22,189 INFO : Expanding sim_h2b_synthetic_qehf_pr0pr5_v03.sky.view
18 Jun 2024 13:55:22,190 INFO : Expanding sim_h2b_synthetic_qehf_pr0pr5_v03.sky
18 Jun 2024 13:55:22,196 INFO : 8% Done
18 Jun 2024 13:55:22,406 INFO : Inserting H2B_shared_all_HUMAN
18 Jun 2024 13:55:22,419 INFO : 42% Done
18 Jun 2024 13:55:22,482 INFO : Inserting H2B_specific_common1_HUMAN
18 Jun 2024 13:55:22,490 INFO : 66% Done
18 Jun 2024 13:55:22,536 INFO : Inserting H2B_specific_common2_HUMAN
18 Jun 2024 13:55:22,541 INFO : 80% Done
18 Jun 2024 13:55:22,572 INFO : Done parsing Skyline document.
18 Jun 2024 13:55:22,635 INFO : Calculating fold changes
18 Jun 2024 13:55:22,683 INFO : 98% Done
18 Jun 2024 13:55:22,683 INFO : Done calculating fold changes.
18 Jun 2024 13:55:22,684 INFO : Creating and populating temp tables for Proportion values
18 Jun 2024 13:55:22,688 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
18 Jun 2024 13:55:22,692 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
18 Jun 2024 13:55:22,694 INFO : Cleaning up temp tables
18 Jun 2024 13:55:22,991 INFO : Completed import of Skyline document from sim_h2b_synthetic_qehf_pr0pr5_v03_2024-06-18_10-27-02.sky.zip
18 Jun 2024 13:55:22,993 INFO : 100% Done
18 Jun 2024 13:55:23,006 INFO : Done importing xar
18 Jun 2024 13:55:23,007 INFO : Loading pages and webpart properties
18 Jun 2024 13:55:23,087 INFO : Done importing 4 page(s) with 6 webpart(s)
18 Jun 2024 13:55:23,087 INFO : Loading File Browser config
18 Jun 2024 13:55:23,087 INFO : Done importing File Browser config
18 Jun 2024 13:55:23,088 INFO : Starting Sample Status Data import
18 Jun 2024 13:55:23,088 INFO : No sample types XAR file to process.
18 Jun 2024 13:55:23,088 INFO : Finished importing Sample Status Data
18 Jun 2024 13:55:23,093 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
18 Jun 2024 13:55:23,094 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
18 Jun 2024 13:55:23,095 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
18 Jun 2024 13:55:23,095 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
18 Jun 2024 13:55:23,095 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
18 Jun 2024 13:55:23,095 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
18 Jun 2024 13:55:23,096 INFO : Moving files to folder /Panorama Public/2024/Case Western Reserve U Lund Lab - 2024_HistoneUb/Fig05_H2B_peptide_spike and creating symlinks
18 Jun 2024 13:55:23,238 INFO : Aligning data files urls in folder: /Panorama Public/2024/Case Western Reserve U Lund Lab - 2024_HistoneUb/Fig05_H2B_peptide_spike
18 Jun 2024 13:55:23,248 INFO : Done importing folder archive for Fig05_H2B_peptide_spike
18 Jun 2024 13:55:23,307 INFO : New folder created with inherited permissions: /Panorama Public/2024/Case Western Reserve U Lund Lab - 2024_HistoneUb/Fig06_inhibitors
18 Jun 2024 13:55:23,308 INFO : Loading folder archive for Fig06_inhibitors
18 Jun 2024 13:55:23,309 INFO : Loading folder properties (folder type, settings and active modules)
18 Jun 2024 13:55:23,375 INFO : Done importing folder properties (folder type, settings and active modules)
18 Jun 2024 13:55:23,376 INFO : Loading container specific module properties
18 Jun 2024 13:55:23,380 INFO : Done importing container specific module properties
18 Jun 2024 13:55:23,381 INFO : Loading queries
18 Jun 2024 13:55:23,384 INFO : 1 query imported
18 Jun 2024 13:55:23,384 INFO : Done importing queries
18 Jun 2024 13:55:23,385 INFO : Loading etl definitions
18 Jun 2024 13:55:23,386 INFO : Loading wikis
18 Jun 2024 13:55:23,387 INFO : 0 wikis imported
18 Jun 2024 13:55:23,387 INFO : Done importing wikis
18 Jun 2024 13:55:23,389 INFO : Starting Data Class Importer
18 Jun 2024 13:55:23,389 INFO : No types XAR file to process.
18 Jun 2024 13:55:23,389 INFO : Finished Data Class Importer
18 Jun 2024 13:55:23,390 INFO : Starting to copy files
18 Jun 2024 13:55:23,390 INFO : Copied 0 files
18 Jun 2024 13:55:23,390 INFO : Ensuring exp.data rows exist for imported files
18 Jun 2024 13:55:23,394 INFO : Starting Sample Type Importer
18 Jun 2024 13:55:23,394 INFO : No types XAR file to process.
18 Jun 2024 13:55:23,394 INFO : Finished Sample Type Importer
18 Jun 2024 13:55:23,395 INFO : Loading xar
18 Jun 2024 13:55:23,399 INFO : Done importing xar
18 Jun 2024 13:55:23,400 INFO : Loading pages and webpart properties
18 Jun 2024 13:55:23,461 INFO : Done importing 3 page(s) with 4 webpart(s)
18 Jun 2024 13:55:23,461 INFO : Loading File Browser config
18 Jun 2024 13:55:23,461 INFO : Done importing File Browser config
18 Jun 2024 13:55:23,462 INFO : Starting Sample Status Data import
18 Jun 2024 13:55:23,462 INFO : No sample types XAR file to process.
18 Jun 2024 13:55:23,462 INFO : Finished importing Sample Status Data
18 Jun 2024 13:55:23,467 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
18 Jun 2024 13:55:23,469 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
18 Jun 2024 13:55:23,469 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
18 Jun 2024 13:55:23,470 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
18 Jun 2024 13:55:23,470 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
18 Jun 2024 13:55:23,470 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
18 Jun 2024 13:55:23,471 INFO : Loading subfolders and container tabs
18 Jun 2024 13:55:23,526 INFO : New folder created with inherited permissions: /Panorama Public/2024/Case Western Reserve U Lund Lab - 2024_HistoneUb/Fig06_inhibitors/1_sgRING
18 Jun 2024 13:55:23,526 INFO : Loading folder archive for 1_sgRING
18 Jun 2024 13:55:23,527 INFO : Loading folder properties (folder type, settings and active modules)
18 Jun 2024 13:55:23,581 INFO : Done importing folder properties (folder type, settings and active modules)
18 Jun 2024 13:55:23,582 INFO : Loading container specific module properties
18 Jun 2024 13:55:23,585 INFO : Done importing container specific module properties
18 Jun 2024 13:55:23,586 INFO : Loading queries
18 Jun 2024 13:55:23,589 INFO : 1 query imported
18 Jun 2024 13:55:23,589 INFO : Done importing queries
18 Jun 2024 13:55:23,590 INFO : Loading etl definitions
18 Jun 2024 13:55:23,591 INFO : Loading wikis
18 Jun 2024 13:55:23,592 INFO : 0 wikis imported
18 Jun 2024 13:55:23,592 INFO : Done importing wikis
18 Jun 2024 13:55:23,593 INFO : Starting Data Class Importer
18 Jun 2024 13:55:23,593 INFO : No types XAR file to process.
18 Jun 2024 13:55:23,593 INFO : Finished Data Class Importer
18 Jun 2024 13:55:23,594 INFO : Starting to copy files
18 Jun 2024 13:55:23,594 INFO : Copied 0 files
18 Jun 2024 13:55:23,594 INFO : Ensuring exp.data rows exist for imported files
18 Jun 2024 13:55:23,599 INFO : Starting Sample Type Importer
18 Jun 2024 13:55:23,599 INFO : No types XAR file to process.
18 Jun 2024 13:55:23,599 INFO : Finished Sample Type Importer
18 Jun 2024 13:55:23,600 INFO : Loading xar
18 Jun 2024 13:55:23,666 INFO : Starting import from 20210304_ExptT_sgRING_qe_pr0pr5_v03_2024-06-18_10-33-07.sky.zip
18 Jun 2024 13:55:23,668 INFO : Starting to import Skyline document from 20210304_ExptT_sgRING_qe_pr0pr5_v03_2024-06-18_10-33-07.sky.zip
18 Jun 2024 13:55:23,669 INFO : Expanding 20210304_ExptT_sgRING_qe_pr0pr5_v03.skyd
18 Jun 2024 13:55:23,684 INFO : Expanding 20210304_ExptT_sgRING_qe_pr0pr5_v03.sky.view
18 Jun 2024 13:55:23,684 INFO : Expanding 20210304_ExptT_sgRING_qe_pr0pr5_v03.sky
18 Jun 2024 13:55:23,690 INFO : 2% Done
18 Jun 2024 13:55:23,915 INFO : 3% Done
18 Jun 2024 13:55:23,915 INFO : Inserting H2A_shared_all_HUMAN
18 Jun 2024 13:55:23,923 INFO : 14% Done
18 Jun 2024 13:55:23,966 INFO : 15% Done
18 Jun 2024 13:55:23,966 INFO : Inserting H2A_specific_common1_HUMAN
18 Jun 2024 13:55:23,974 INFO : 25% Done
18 Jun 2024 13:55:24,012 INFO : Inserting H2A_specific_common3_HUMAN
18 Jun 2024 13:55:24,018 INFO : 34% Done
18 Jun 2024 13:55:24,052 INFO : Inserting H2B_shared_all_HUMAN
18 Jun 2024 13:55:24,060 INFO : 46% Done
18 Jun 2024 13:55:24,105 INFO : 54% Done
18 Jun 2024 13:55:24,141 INFO : 65% Done
18 Jun 2024 13:55:24,178 INFO : Inserting H2B_specific_common1_HUMAN
18 Jun 2024 13:55:24,184 INFO : 73% Done
18 Jun 2024 13:55:24,213 INFO : Inserting H2B_specific_common2_HUMAN
18 Jun 2024 13:55:24,218 INFO : 80% Done
18 Jun 2024 13:55:24,247 INFO : Done parsing Skyline document.
18 Jun 2024 13:55:24,311 INFO : Calculating fold changes
18 Jun 2024 13:55:24,435 INFO : 98% Done
18 Jun 2024 13:55:24,435 INFO : Done calculating fold changes.
18 Jun 2024 13:55:24,436 INFO : Creating and populating temp tables for Proportion values
18 Jun 2024 13:55:24,441 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
18 Jun 2024 13:55:24,449 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
18 Jun 2024 13:55:24,452 INFO : Cleaning up temp tables
18 Jun 2024 13:55:24,761 INFO : Completed import of Skyline document from 20210304_ExptT_sgRING_qe_pr0pr5_v03_2024-06-18_10-33-07.sky.zip
18 Jun 2024 13:55:24,764 INFO : 100% Done
18 Jun 2024 13:55:24,774 INFO : Done importing xar
18 Jun 2024 13:55:24,775 INFO : Loading pages and webpart properties
18 Jun 2024 13:55:24,858 INFO : Done importing 4 page(s) with 6 webpart(s)
18 Jun 2024 13:55:24,858 INFO : Loading File Browser config
18 Jun 2024 13:55:24,858 INFO : Done importing File Browser config
18 Jun 2024 13:55:24,859 INFO : Starting Sample Status Data import
18 Jun 2024 13:55:24,860 INFO : No sample types XAR file to process.
18 Jun 2024 13:55:24,860 INFO : Finished importing Sample Status Data
18 Jun 2024 13:55:24,864 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
18 Jun 2024 13:55:24,866 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
18 Jun 2024 13:55:24,866 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
18 Jun 2024 13:55:24,867 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
18 Jun 2024 13:55:24,867 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
18 Jun 2024 13:55:24,867 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
18 Jun 2024 13:55:24,868 INFO : Moving files to folder /Panorama Public/2024/Case Western Reserve U Lund Lab - 2024_HistoneUb/Fig06_inhibitors/1_sgRING and creating symlinks
18 Jun 2024 13:55:24,916 INFO : Aligning data files urls in folder: /Panorama Public/2024/Case Western Reserve U Lund Lab - 2024_HistoneUb/Fig06_inhibitors/1_sgRING
18 Jun 2024 13:55:24,922 INFO : Done importing folder archive for 1_sgRING
18 Jun 2024 13:55:24,976 INFO : New folder created with inherited permissions: /Panorama Public/2024/Case Western Reserve U Lund Lab - 2024_HistoneUb/Fig06_inhibitors/2_pano
18 Jun 2024 13:55:24,976 INFO : Loading folder archive for 2_pano
18 Jun 2024 13:55:24,977 INFO : Loading folder properties (folder type, settings and active modules)
18 Jun 2024 13:55:25,037 INFO : Done importing folder properties (folder type, settings and active modules)
18 Jun 2024 13:55:25,038 INFO : Loading container specific module properties
18 Jun 2024 13:55:25,042 INFO : Done importing container specific module properties
18 Jun 2024 13:55:25,043 INFO : Loading queries
18 Jun 2024 13:55:25,046 INFO : 1 query imported
18 Jun 2024 13:55:25,046 INFO : Done importing queries
18 Jun 2024 13:55:25,047 INFO : Loading etl definitions
18 Jun 2024 13:55:25,048 INFO : Loading wikis
18 Jun 2024 13:55:25,049 INFO : 0 wikis imported
18 Jun 2024 13:55:25,049 INFO : Done importing wikis
18 Jun 2024 13:55:25,050 INFO : Starting Data Class Importer
18 Jun 2024 13:55:25,050 INFO : No types XAR file to process.
18 Jun 2024 13:55:25,050 INFO : Finished Data Class Importer
18 Jun 2024 13:55:25,051 INFO : Starting to copy files
18 Jun 2024 13:55:25,051 INFO : Copied 0 files
18 Jun 2024 13:55:25,051 INFO : Ensuring exp.data rows exist for imported files
18 Jun 2024 13:55:25,055 INFO : Starting Sample Type Importer
18 Jun 2024 13:55:25,055 INFO : No types XAR file to process.
18 Jun 2024 13:55:25,055 INFO : Finished Sample Type Importer
18 Jun 2024 13:55:25,056 INFO : Loading xar
18 Jun 2024 13:55:25,156 INFO : Starting import from 20210304_ExptF_pano_qe_pr0pr5_v03_2024-06-18_10-35-02.sky.zip
18 Jun 2024 13:55:25,158 INFO : Starting to import Skyline document from 20210304_ExptF_pano_qe_pr0pr5_v03_2024-06-18_10-35-02.sky.zip
18 Jun 2024 13:55:25,159 INFO : Expanding 20210304_ExptF_pano_qe_pr0pr5_v03.skyd
18 Jun 2024 13:55:25,190 INFO : Expanding 20210304_ExptF_pano_qe_pr0pr5_v03.sky.view
18 Jun 2024 13:55:25,190 INFO : Expanding 20210304_ExptF_pano_qe_pr0pr5_v03.sky
18 Jun 2024 13:55:25,199 INFO : 2% Done
18 Jun 2024 13:55:25,488 INFO : Inserting H2A_shared_all_HUMAN
18 Jun 2024 13:55:25,507 INFO : 14% Done
18 Jun 2024 13:55:25,604 INFO : Inserting H2A_specific_common1_HUMAN
18 Jun 2024 13:55:25,621 INFO : 25% Done
18 Jun 2024 13:55:25,707 INFO : Inserting H2A_specific_common3_HUMAN
18 Jun 2024 13:55:25,719 INFO : 34% Done
18 Jun 2024 13:55:25,792 INFO : Inserting H2B_shared_all_HUMAN
18 Jun 2024 13:55:25,810 INFO : 46% Done
18 Jun 2024 13:55:25,913 INFO : 54% Done
18 Jun 2024 13:55:25,998 INFO : 65% Done
18 Jun 2024 13:55:26,086 INFO : Inserting H2B_specific_common1_HUMAN
18 Jun 2024 13:55:26,097 INFO : 73% Done
18 Jun 2024 13:55:26,164 INFO : Inserting H2B_specific_common2_HUMAN
18 Jun 2024 13:55:26,174 INFO : 80% Done
18 Jun 2024 13:55:26,246 INFO : Done parsing Skyline document.
18 Jun 2024 13:55:26,308 INFO : Calculating fold changes
18 Jun 2024 13:55:26,477 INFO : 98% Done
18 Jun 2024 13:55:26,477 INFO : Done calculating fold changes.
18 Jun 2024 13:55:26,478 INFO : Creating and populating temp tables for Proportion values
18 Jun 2024 13:55:26,483 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
18 Jun 2024 13:55:26,498 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
18 Jun 2024 13:55:26,504 INFO : Cleaning up temp tables
18 Jun 2024 13:55:26,809 INFO : Completed import of Skyline document from 20210304_ExptF_pano_qe_pr0pr5_v03_2024-06-18_10-35-02.sky.zip
18 Jun 2024 13:55:26,811 INFO : 100% Done
18 Jun 2024 13:55:26,823 INFO : Done importing xar
18 Jun 2024 13:55:26,824 INFO : Loading pages and webpart properties
18 Jun 2024 13:55:26,903 INFO : Done importing 4 page(s) with 6 webpart(s)
18 Jun 2024 13:55:26,903 INFO : Loading File Browser config
18 Jun 2024 13:55:26,903 INFO : Done importing File Browser config
18 Jun 2024 13:55:26,904 INFO : Starting Sample Status Data import
18 Jun 2024 13:55:26,904 INFO : No sample types XAR file to process.
18 Jun 2024 13:55:26,904 INFO : Finished importing Sample Status Data
18 Jun 2024 13:55:26,909 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
18 Jun 2024 13:55:26,910 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
18 Jun 2024 13:55:26,911 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
18 Jun 2024 13:55:26,911 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
18 Jun 2024 13:55:26,912 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
18 Jun 2024 13:55:26,912 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
18 Jun 2024 13:55:26,912 INFO : Moving files to folder /Panorama Public/2024/Case Western Reserve U Lund Lab - 2024_HistoneUb/Fig06_inhibitors/2_pano and creating symlinks
18 Jun 2024 13:55:27,005 INFO : Aligning data files urls in folder: /Panorama Public/2024/Case Western Reserve U Lund Lab - 2024_HistoneUb/Fig06_inhibitors/2_pano
18 Jun 2024 13:55:27,010 INFO : Done importing folder archive for 2_pano
18 Jun 2024 13:55:27,066 INFO : New folder created with inherited permissions: /Panorama Public/2024/Case Western Reserve U Lund Lab - 2024_HistoneUb/Fig06_inhibitors/3_mito
18 Jun 2024 13:55:27,066 INFO : Loading folder archive for 3_mito
18 Jun 2024 13:55:27,067 INFO : Loading folder properties (folder type, settings and active modules)
18 Jun 2024 13:55:27,128 INFO : Done importing folder properties (folder type, settings and active modules)
18 Jun 2024 13:55:27,129 INFO : Loading container specific module properties
18 Jun 2024 13:55:27,133 INFO : Done importing container specific module properties
18 Jun 2024 13:55:27,134 INFO : Loading queries
18 Jun 2024 13:55:27,137 INFO : 1 query imported
18 Jun 2024 13:55:27,137 INFO : Done importing queries
18 Jun 2024 13:55:27,138 INFO : Loading etl definitions
18 Jun 2024 13:55:27,139 INFO : Loading wikis
18 Jun 2024 13:55:27,140 INFO : 0 wikis imported
18 Jun 2024 13:55:27,140 INFO : Done importing wikis
18 Jun 2024 13:55:27,142 INFO : Starting Data Class Importer
18 Jun 2024 13:55:27,142 INFO : No types XAR file to process.
18 Jun 2024 13:55:27,142 INFO : Finished Data Class Importer
18 Jun 2024 13:55:27,143 INFO : Starting to copy files
18 Jun 2024 13:55:27,143 INFO : Copied 0 files
18 Jun 2024 13:55:27,143 INFO : Ensuring exp.data rows exist for imported files
18 Jun 2024 13:55:27,147 INFO : Starting Sample Type Importer
18 Jun 2024 13:55:27,148 INFO : No types XAR file to process.
18 Jun 2024 13:55:27,148 INFO : Finished Sample Type Importer
18 Jun 2024 13:55:27,149 INFO : Loading xar
18 Jun 2024 13:55:27,253 INFO : Starting import from 20210304_ExptE_mito_qe_pr0pr5_v03_2024-06-18_10-43-22.sky.zip
18 Jun 2024 13:55:27,256 INFO : Starting to import Skyline document from 20210304_ExptE_mito_qe_pr0pr5_v03_2024-06-18_10-43-22.sky.zip
18 Jun 2024 13:55:27,257 INFO : Expanding 20210304_ExptE_mito_qe_pr0pr5_v03.skyd
18 Jun 2024 13:55:27,286 INFO : Expanding 20210304_ExptE_mito_qe_pr0pr5_v03.sky.view
18 Jun 2024 13:55:27,287 INFO : Expanding 20210304_ExptE_mito_qe_pr0pr5_v03.sky
18 Jun 2024 13:55:27,297 INFO : 2% Done
18 Jun 2024 13:55:27,586 INFO : Inserting H2A_shared_all_HUMAN
18 Jun 2024 13:55:27,606 INFO : 14% Done
18 Jun 2024 13:55:27,704 INFO : Inserting H2A_specific_common1_HUMAN
18 Jun 2024 13:55:27,721 INFO : 25% Done
18 Jun 2024 13:55:27,807 INFO : Inserting H2A_specific_common3_HUMAN
18 Jun 2024 13:55:27,820 INFO : 34% Done
18 Jun 2024 13:55:27,896 INFO : Inserting H2B_shared_all_HUMAN
18 Jun 2024 13:55:27,915 INFO : 46% Done
18 Jun 2024 13:55:28,024 INFO : 54% Done
18 Jun 2024 13:55:28,114 INFO : 65% Done
18 Jun 2024 13:55:28,206 INFO : Inserting H2B_specific_common1_HUMAN
18 Jun 2024 13:55:28,218 INFO : 73% Done
18 Jun 2024 13:55:28,287 INFO : Inserting H2B_specific_common2_HUMAN
18 Jun 2024 13:55:28,298 INFO : 80% Done
18 Jun 2024 13:55:28,368 INFO : Done parsing Skyline document.
18 Jun 2024 13:55:28,430 INFO : Calculating fold changes
18 Jun 2024 13:55:28,604 INFO : 98% Done
18 Jun 2024 13:55:28,604 INFO : Done calculating fold changes.
18 Jun 2024 13:55:28,605 INFO : Creating and populating temp tables for Proportion values
18 Jun 2024 13:55:28,610 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
18 Jun 2024 13:55:28,625 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
18 Jun 2024 13:55:28,631 INFO : Cleaning up temp tables
18 Jun 2024 13:55:28,927 INFO : Completed import of Skyline document from 20210304_ExptE_mito_qe_pr0pr5_v03_2024-06-18_10-43-22.sky.zip
18 Jun 2024 13:55:28,929 INFO : 100% Done
18 Jun 2024 13:55:28,941 INFO : Done importing xar
18 Jun 2024 13:55:28,942 INFO : Loading pages and webpart properties
18 Jun 2024 13:55:29,023 INFO : Done importing 4 page(s) with 6 webpart(s)
18 Jun 2024 13:55:29,023 INFO : Loading File Browser config
18 Jun 2024 13:55:29,023 INFO : Done importing File Browser config
18 Jun 2024 13:55:29,024 INFO : Starting Sample Status Data import
18 Jun 2024 13:55:29,024 INFO : No sample types XAR file to process.
18 Jun 2024 13:55:29,024 INFO : Finished importing Sample Status Data
18 Jun 2024 13:55:29,029 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
18 Jun 2024 13:55:29,031 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
18 Jun 2024 13:55:29,031 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
18 Jun 2024 13:55:29,032 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
18 Jun 2024 13:55:29,032 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
18 Jun 2024 13:55:29,032 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
18 Jun 2024 13:55:29,033 INFO : Moving files to folder /Panorama Public/2024/Case Western Reserve U Lund Lab - 2024_HistoneUb/Fig06_inhibitors/3_mito and creating symlinks
18 Jun 2024 13:55:29,147 INFO : Aligning data files urls in folder: /Panorama Public/2024/Case Western Reserve U Lund Lab - 2024_HistoneUb/Fig06_inhibitors/3_mito
18 Jun 2024 13:55:29,153 INFO : Done importing folder archive for 3_mito
18 Jun 2024 13:55:29,211 INFO : New folder created with inherited permissions: /Panorama Public/2024/Case Western Reserve U Lund Lab - 2024_HistoneUb/Fig06_inhibitors/4_ActD
18 Jun 2024 13:55:29,211 INFO : Loading folder archive for 4_ActD
18 Jun 2024 13:55:29,213 INFO : Loading folder properties (folder type, settings and active modules)
18 Jun 2024 13:55:29,273 INFO : Done importing folder properties (folder type, settings and active modules)
18 Jun 2024 13:55:29,274 INFO : Loading container specific module properties
18 Jun 2024 13:55:29,277 INFO : Done importing container specific module properties
18 Jun 2024 13:55:29,278 INFO : Loading queries
18 Jun 2024 13:55:29,282 INFO : 1 query imported
18 Jun 2024 13:55:29,283 INFO : Done importing queries
18 Jun 2024 13:55:29,284 INFO : Loading etl definitions
18 Jun 2024 13:55:29,285 INFO : Loading wikis
18 Jun 2024 13:55:29,286 INFO : 0 wikis imported
18 Jun 2024 13:55:29,286 INFO : Done importing wikis
18 Jun 2024 13:55:29,289 INFO : Starting Data Class Importer
18 Jun 2024 13:55:29,289 INFO : No types XAR file to process.
18 Jun 2024 13:55:29,289 INFO : Finished Data Class Importer
18 Jun 2024 13:55:29,290 INFO : Starting to copy files
18 Jun 2024 13:55:29,290 INFO : Copied 0 files
18 Jun 2024 13:55:29,290 INFO : Ensuring exp.data rows exist for imported files
18 Jun 2024 13:55:29,295 INFO : Starting Sample Type Importer
18 Jun 2024 13:55:29,295 INFO : No types XAR file to process.
18 Jun 2024 13:55:29,295 INFO : Finished Sample Type Importer
18 Jun 2024 13:55:29,296 INFO : Loading xar
18 Jun 2024 13:55:29,414 INFO : Starting import from 20210304_ExptB_ActD_qe_pr0pr5_v03_2024-06-18_10-44-47.sky.zip
18 Jun 2024 13:55:29,417 INFO : Starting to import Skyline document from 20210304_ExptB_ActD_qe_pr0pr5_v03_2024-06-18_10-44-47.sky.zip
18 Jun 2024 13:55:29,502 INFO : Expanding 20210304_ExptB_ActD_qe_pr0pr5_v03.skyd
18 Jun 2024 13:55:29,542 INFO : Expanding 20210304_ExptB_ActD_qe_pr0pr5_v03.sky.view
18 Jun 2024 13:55:29,543 INFO : Expanding 20210304_ExptB_ActD_qe_pr0pr5_v03.sky
18 Jun 2024 13:55:29,553 INFO : 2% Done
18 Jun 2024 13:55:29,888 INFO : Inserting H2A_shared_all_HUMAN
18 Jun 2024 13:55:29,914 INFO : 14% Done
18 Jun 2024 13:55:30,039 INFO : Inserting H2A_specific_common1_HUMAN
18 Jun 2024 13:55:30,061 INFO : 25% Done
18 Jun 2024 13:55:30,173 INFO : Inserting H2A_specific_common3_HUMAN
18 Jun 2024 13:55:30,189 INFO : 34% Done
18 Jun 2024 13:55:30,287 INFO : Inserting H2B_shared_all_HUMAN
18 Jun 2024 13:55:30,312 INFO : 45% Done
18 Jun 2024 13:55:30,450 INFO : 54% Done
18 Jun 2024 13:55:30,561 INFO : 65% Done
18 Jun 2024 13:55:30,671 INFO : Inserting H2B_specific_common1_HUMAN
18 Jun 2024 13:55:30,685 INFO : 73% Done
18 Jun 2024 13:55:30,771 INFO : Inserting H2B_specific_common2_HUMAN
18 Jun 2024 13:55:30,784 INFO : 80% Done
18 Jun 2024 13:55:30,873 INFO : Done parsing Skyline document.
18 Jun 2024 13:55:30,935 INFO : Calculating fold changes
18 Jun 2024 13:55:31,120 INFO : 98% Done
18 Jun 2024 13:55:31,120 INFO : Done calculating fold changes.
18 Jun 2024 13:55:31,121 INFO : Creating and populating temp tables for Proportion values
18 Jun 2024 13:55:31,126 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
18 Jun 2024 13:55:31,147 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
18 Jun 2024 13:55:31,155 INFO : Cleaning up temp tables
18 Jun 2024 13:55:31,464 INFO : Completed import of Skyline document from 20210304_ExptB_ActD_qe_pr0pr5_v03_2024-06-18_10-44-47.sky.zip
18 Jun 2024 13:55:31,466 INFO : 100% Done
18 Jun 2024 13:55:31,476 INFO : Done importing xar
18 Jun 2024 13:55:31,477 INFO : Loading pages and webpart properties
18 Jun 2024 13:55:31,557 INFO : Done importing 4 page(s) with 6 webpart(s)
18 Jun 2024 13:55:31,557 INFO : Loading File Browser config
18 Jun 2024 13:55:31,557 INFO : Done importing File Browser config
18 Jun 2024 13:55:31,558 INFO : Starting Sample Status Data import
18 Jun 2024 13:55:31,559 INFO : No sample types XAR file to process.
18 Jun 2024 13:55:31,559 INFO : Finished importing Sample Status Data
18 Jun 2024 13:55:31,563 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
18 Jun 2024 13:55:31,565 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
18 Jun 2024 13:55:31,565 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
18 Jun 2024 13:55:31,566 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
18 Jun 2024 13:55:31,566 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
18 Jun 2024 13:55:31,566 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
18 Jun 2024 13:55:31,567 INFO : Moving files to folder /Panorama Public/2024/Case Western Reserve U Lund Lab - 2024_HistoneUb/Fig06_inhibitors/4_ActD and creating symlinks
18 Jun 2024 13:55:31,702 INFO : Aligning data files urls in folder: /Panorama Public/2024/Case Western Reserve U Lund Lab - 2024_HistoneUb/Fig06_inhibitors/4_ActD
18 Jun 2024 13:55:31,707 INFO : Done importing folder archive for 4_ActD
18 Jun 2024 13:55:31,762 INFO : New folder created with inherited permissions: /Panorama Public/2024/Case Western Reserve U Lund Lab - 2024_HistoneUb/Fig06_inhibitors/5_Ei1
18 Jun 2024 13:55:31,762 INFO : Loading folder archive for 5_Ei1
18 Jun 2024 13:55:31,763 INFO : Loading folder properties (folder type, settings and active modules)
18 Jun 2024 13:55:31,823 INFO : Done importing folder properties (folder type, settings and active modules)
18 Jun 2024 13:55:31,825 INFO : Loading container specific module properties
18 Jun 2024 13:55:31,828 INFO : Done importing container specific module properties
18 Jun 2024 13:55:31,829 INFO : Loading queries
18 Jun 2024 13:55:31,832 INFO : 1 query imported
18 Jun 2024 13:55:31,832 INFO : Done importing queries
18 Jun 2024 13:55:31,833 INFO : Loading etl definitions
18 Jun 2024 13:55:31,835 INFO : Loading wikis
18 Jun 2024 13:55:31,836 INFO : 0 wikis imported
18 Jun 2024 13:55:31,836 INFO : Done importing wikis
18 Jun 2024 13:55:31,837 INFO : Starting Data Class Importer
18 Jun 2024 13:55:31,837 INFO : No types XAR file to process.
18 Jun 2024 13:55:31,837 INFO : Finished Data Class Importer
18 Jun 2024 13:55:31,838 INFO : Starting to copy files
18 Jun 2024 13:55:31,838 INFO : Copied 0 files
18 Jun 2024 13:55:31,838 INFO : Ensuring exp.data rows exist for imported files
18 Jun 2024 13:55:31,843 INFO : Starting Sample Type Importer
18 Jun 2024 13:55:31,843 INFO : No types XAR file to process.
18 Jun 2024 13:55:31,843 INFO : Finished Sample Type Importer
18 Jun 2024 13:55:31,844 INFO : Loading xar
18 Jun 2024 13:55:31,936 INFO : Starting import from 20210304_ExptD_Ei1_qe_pr0pr5_v03_2024-06-18_10-46-00.sky.zip
18 Jun 2024 13:55:31,939 INFO : Starting to import Skyline document from 20210304_ExptD_Ei1_qe_pr0pr5_v03_2024-06-18_10-46-00.sky.zip
18 Jun 2024 13:55:31,940 INFO : Expanding 20210304_ExptD_Ei1_qe_pr0pr5_v03.skyd
18 Jun 2024 13:55:31,970 INFO : Expanding 20210304_ExptD_Ei1_qe_pr0pr5_v03.sky.view
18 Jun 2024 13:55:31,970 INFO : Expanding 20210304_ExptD_Ei1_qe_pr0pr5_v03.sky
18 Jun 2024 13:55:31,978 INFO : 2% Done
18 Jun 2024 13:55:32,275 INFO : Inserting H2A_shared_all_HUMAN
18 Jun 2024 13:55:32,294 INFO : 14% Done
18 Jun 2024 13:55:32,390 INFO : Inserting H2A_specific_common1_HUMAN
18 Jun 2024 13:55:32,407 INFO : 25% Done
18 Jun 2024 13:55:32,497 INFO : Inserting H2A_specific_common3_HUMAN
18 Jun 2024 13:55:32,510 INFO : 34% Done
18 Jun 2024 13:55:32,585 INFO : Inserting H2B_shared_all_HUMAN
18 Jun 2024 13:55:32,603 INFO : 46% Done
18 Jun 2024 13:55:32,712 INFO : 54% Done
18 Jun 2024 13:55:32,801 INFO : 65% Done
18 Jun 2024 13:55:32,890 INFO : Inserting H2B_specific_common1_HUMAN
18 Jun 2024 13:55:32,900 INFO : 73% Done
18 Jun 2024 13:55:32,964 INFO : Inserting H2B_specific_common2_HUMAN
18 Jun 2024 13:55:32,974 INFO : 80% Done
18 Jun 2024 13:55:33,040 INFO : Done parsing Skyline document.
18 Jun 2024 13:55:33,102 INFO : Calculating fold changes
18 Jun 2024 13:55:33,258 INFO : 98% Done
18 Jun 2024 13:55:33,258 INFO : Done calculating fold changes.
18 Jun 2024 13:55:33,259 INFO : Creating and populating temp tables for Proportion values
18 Jun 2024 13:55:33,264 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
18 Jun 2024 13:55:33,280 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
18 Jun 2024 13:55:33,285 INFO : Cleaning up temp tables
18 Jun 2024 13:55:33,578 INFO : Completed import of Skyline document from 20210304_ExptD_Ei1_qe_pr0pr5_v03_2024-06-18_10-46-00.sky.zip
18 Jun 2024 13:55:33,580 INFO : 100% Done
18 Jun 2024 13:55:33,591 INFO : Done importing xar
18 Jun 2024 13:55:33,592 INFO : Loading pages and webpart properties
18 Jun 2024 13:55:33,678 INFO : Done importing 4 page(s) with 6 webpart(s)
18 Jun 2024 13:55:33,678 INFO : Loading File Browser config
18 Jun 2024 13:55:33,678 INFO : Done importing File Browser config
18 Jun 2024 13:55:33,679 INFO : Starting Sample Status Data import
18 Jun 2024 13:55:33,680 INFO : No sample types XAR file to process.
18 Jun 2024 13:55:33,680 INFO : Finished importing Sample Status Data
18 Jun 2024 13:55:33,684 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
18 Jun 2024 13:55:33,686 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
18 Jun 2024 13:55:33,687 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
18 Jun 2024 13:55:33,687 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
18 Jun 2024 13:55:33,688 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
18 Jun 2024 13:55:33,688 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
18 Jun 2024 13:55:33,689 INFO : Moving files to folder /Panorama Public/2024/Case Western Reserve U Lund Lab - 2024_HistoneUb/Fig06_inhibitors/5_Ei1 and creating symlinks
18 Jun 2024 13:55:33,789 INFO : Aligning data files urls in folder: /Panorama Public/2024/Case Western Reserve U Lund Lab - 2024_HistoneUb/Fig06_inhibitors/5_Ei1
18 Jun 2024 13:55:33,795 INFO : Done importing folder archive for 5_Ei1
18 Jun 2024 13:55:33,851 INFO : New folder created with inherited permissions: /Panorama Public/2024/Case Western Reserve U Lund Lab - 2024_HistoneUb/Fig06_inhibitors/6_etopo
18 Jun 2024 13:55:33,851 INFO : Loading folder archive for 6_etopo
18 Jun 2024 13:55:33,852 INFO : Loading folder properties (folder type, settings and active modules)
18 Jun 2024 13:55:33,914 INFO : Done importing folder properties (folder type, settings and active modules)
18 Jun 2024 13:55:33,915 INFO : Loading container specific module properties
18 Jun 2024 13:55:33,918 INFO : Done importing container specific module properties
18 Jun 2024 13:55:33,920 INFO : Loading queries
18 Jun 2024 13:55:33,923 INFO : 1 query imported
18 Jun 2024 13:55:33,923 INFO : Done importing queries
18 Jun 2024 13:55:33,924 INFO : Loading etl definitions
18 Jun 2024 13:55:33,925 INFO : Loading wikis
18 Jun 2024 13:55:33,926 INFO : 0 wikis imported
18 Jun 2024 13:55:33,926 INFO : Done importing wikis
18 Jun 2024 13:55:33,928 INFO : Starting Data Class Importer
18 Jun 2024 13:55:33,928 INFO : No types XAR file to process.
18 Jun 2024 13:55:33,928 INFO : Finished Data Class Importer
18 Jun 2024 13:55:33,928 INFO : Starting to copy files
18 Jun 2024 13:55:33,929 INFO : Copied 0 files
18 Jun 2024 13:55:33,929 INFO : Ensuring exp.data rows exist for imported files
18 Jun 2024 13:55:33,933 INFO : Starting Sample Type Importer
18 Jun 2024 13:55:33,933 INFO : No types XAR file to process.
18 Jun 2024 13:55:33,933 INFO : Finished Sample Type Importer
18 Jun 2024 13:55:33,934 INFO : Loading xar
18 Jun 2024 13:55:34,130 INFO : Starting import from 20210304_ExptC_etopo_qe_pr0pr5_v03_2024-06-18_10-47-17.sky.zip
18 Jun 2024 13:55:34,132 INFO : Starting to import Skyline document from 20210304_ExptC_etopo_qe_pr0pr5_v03_2024-06-18_10-47-17.sky.zip
18 Jun 2024 13:55:34,133 INFO : Expanding 20210304_ExptC_etopo_qe_pr0pr5_v03.skyd
18 Jun 2024 13:55:34,222 INFO : Expanding 20210304_ExptC_etopo_qe_pr0pr5_v03.sky.view
18 Jun 2024 13:55:34,223 INFO : Expanding 20210304_ExptC_etopo_qe_pr0pr5_v03.sky
18 Jun 2024 13:55:34,232 INFO : 2% Done
18 Jun 2024 13:55:34,537 INFO : Inserting H2A_shared_all_HUMAN
18 Jun 2024 13:55:34,556 INFO : 14% Done
18 Jun 2024 13:55:34,659 INFO : Inserting H2A_specific_common1_HUMAN
18 Jun 2024 13:55:34,677 INFO : 25% Done
18 Jun 2024 13:55:34,771 INFO : Inserting H2A_specific_common3_HUMAN
18 Jun 2024 13:55:34,784 INFO : 34% Done
18 Jun 2024 13:55:34,866 INFO : Inserting H2B_shared_all_HUMAN
18 Jun 2024 13:55:34,886 INFO : 46% Done
18 Jun 2024 13:55:34,999 INFO : 54% Done
18 Jun 2024 13:55:35,091 INFO : 65% Done
18 Jun 2024 13:55:35,183 INFO : Inserting H2B_specific_common1_HUMAN
18 Jun 2024 13:55:35,195 INFO : 73% Done
18 Jun 2024 13:55:35,266 INFO : Inserting H2B_specific_common2_HUMAN
18 Jun 2024 13:55:35,276 INFO : 80% Done
18 Jun 2024 13:55:35,350 INFO : Done parsing Skyline document.
18 Jun 2024 13:55:35,412 INFO : Calculating fold changes
18 Jun 2024 13:55:35,587 INFO : 98% Done
18 Jun 2024 13:55:35,587 INFO : Done calculating fold changes.
18 Jun 2024 13:55:35,588 INFO : Creating and populating temp tables for Proportion values
18 Jun 2024 13:55:35,593 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
18 Jun 2024 13:55:35,608 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
18 Jun 2024 13:55:35,614 INFO : Cleaning up temp tables
18 Jun 2024 13:55:35,911 INFO : Completed import of Skyline document from 20210304_ExptC_etopo_qe_pr0pr5_v03_2024-06-18_10-47-17.sky.zip
18 Jun 2024 13:55:35,913 INFO : 100% Done
18 Jun 2024 13:55:35,923 INFO : Done importing xar
18 Jun 2024 13:55:35,924 INFO : Loading pages and webpart properties
18 Jun 2024 13:55:36,005 INFO : Done importing 4 page(s) with 6 webpart(s)
18 Jun 2024 13:55:36,005 INFO : Loading File Browser config
18 Jun 2024 13:55:36,005 INFO : Done importing File Browser config
18 Jun 2024 13:55:36,006 INFO : Starting Sample Status Data import
18 Jun 2024 13:55:36,006 INFO : No sample types XAR file to process.
18 Jun 2024 13:55:36,006 INFO : Finished importing Sample Status Data
18 Jun 2024 13:55:36,010 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
18 Jun 2024 13:55:36,012 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
18 Jun 2024 13:55:36,012 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
18 Jun 2024 13:55:36,013 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
18 Jun 2024 13:55:36,013 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
18 Jun 2024 13:55:36,013 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
18 Jun 2024 13:55:36,014 INFO : Moving files to folder /Panorama Public/2024/Case Western Reserve U Lund Lab - 2024_HistoneUb/Fig06_inhibitors/6_etopo and creating symlinks
18 Jun 2024 13:55:36,146 INFO : Aligning data files urls in folder: /Panorama Public/2024/Case Western Reserve U Lund Lab - 2024_HistoneUb/Fig06_inhibitors/6_etopo
18 Jun 2024 13:55:36,152 INFO : Done importing folder archive for 6_etopo
18 Jun 2024 13:55:36,152 INFO : Done importing subfolders and container tabs
18 Jun 2024 13:55:36,152 INFO : Moving files to folder /Panorama Public/2024/Case Western Reserve U Lund Lab - 2024_HistoneUb/Fig06_inhibitors and creating symlinks
18 Jun 2024 13:55:36,156 INFO : Aligning data files urls in folder: /Panorama Public/2024/Case Western Reserve U Lund Lab - 2024_HistoneUb/Fig06_inhibitors
18 Jun 2024 13:55:36,157 INFO : Done importing folder archive for Fig06_inhibitors
18 Jun 2024 13:55:36,157 INFO : Done importing subfolders and container tabs
18 Jun 2024 13:55:36,158 INFO : Moving files to folder /Panorama Public/2024/Case Western Reserve U Lund Lab - 2024_HistoneUb and creating symlinks
18 Jun 2024 13:55:36,166 INFO : Aligning data files urls in folder: /Panorama Public/2024/Case Western Reserve U Lund Lab - 2024_HistoneUb
18 Jun 2024 13:55:36,166 INFO : Importing files metadata.
18 Jun 2024 13:55:36,180 INFO :
18 Jun 2024 13:55:36,180 INFO : Experiment import completed successfully.
18 Jun 2024 13:55:36,180 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
18 Jun 2024 13:55:36,199 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
18 Jun 2024 13:55:36,199 INFO :
18 Jun 2024 13:55:36,199 INFO : Checking for library folders.
18 Jun 2024 13:55:36,209 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
18 Jun 2024 13:55:36,225 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
18 Jun 2024 13:55:36,225 INFO :
18 Jun 2024 13:55:36,225 INFO : Finishing up experiment copy.
18 Jun 2024 13:55:36,226 INFO : Updating TargetedMS experiment entry in target folder /Panorama Public/2024/Case Western Reserve U Lund Lab - 2024_HistoneUb
18 Jun 2024 13:55:36,227 INFO : Setting version on new experiment to 1
18 Jun 2024 13:55:36,230 INFO : Updating permanent link to point to the new copy of the data.
18 Jun 2024 13:55:36,289 INFO : Removing copy permissions given to Panorama Public
18 Jun 2024 13:55:36,303 INFO : Adding read permissions to all users that are folder admins in the source folder.
18 Jun 2024 13:55:36,304 INFO : Assigning ReaderRole to pxl446@case.edu
18 Jun 2024 13:55:36,304 INFO : Assigning PanoramaPublicSubmitterRole to pxl446@case.edu
18 Jun 2024 13:55:36,308 INFO : Adding user pxl446@case.edu to group Panorama Public Submitters
18 Jun 2024 13:55:36,309 INFO : Updating the 'Raw Data' tab configuration
18 Jun 2024 13:55:36,315 INFO : Creating a reviewer account.
18 Jun 2024 13:55:36,378 INFO : Created reviewer with email: panorama+reviewer271@proteinms.net
18 Jun 2024 13:55:36,378 INFO : Generating password.
18 Jun 2024 13:55:36,515 INFO : Set reviewer password successfully.
18 Jun 2024 13:55:36,522 INFO : Adding user panorama+reviewer271@proteinms.net to group Reviewers
18 Jun 2024 13:55:36,524 INFO : Hiding the Data Pipeline tab.
18 Jun 2024 13:55:36,567 INFO : Updating Submission. Setting copiedExperimentId to 1850
18 Jun 2024 13:55:43,242 INFO : Assigning a ProteomeXchange ID.
18 Jun 2024 13:55:45,076 INFO : Assigned ProteomeXchange ID: PXD053212
18 Jun 2024 13:55:45,076 INFO : Assigning a DOI.
18 Jun 2024 13:55:45,803 INFO : Assigned DOI: 10.6069/gagw-vh04
18 Jun 2024 13:55:45,963 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'