02 Dec 2023 23:51:14,561 INFO : Copying experiment "Evaluation of Solid Phase Adsorption Toxin Tracking (SPATTs) for passive monitoring of Per- and Polyfluoroalkyl Substances (PFAS) using Ion Mobility Spectrometry-Mass Spectrometry (IMS-MS)" from folder /UNC - Baker Lab/SPATT PFAS Publication to /Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication
02 Dec 2023 23:51:14,561 INFO : =======================================
02 Dec 2023 23:51:14,579 DEBUG: Resetting Job ID: 630faf7a-73de-103c-bc68-fea6ddf5ace0
02 Dec 2023 23:51:14,602 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
02 Dec 2023 23:51:14,602 INFO : 
02 Dec 2023 23:51:14,602 INFO : Exporting experiment.
02 Dec 2023 23:51:29,914 INFO : Exporting files metadata.
02 Dec 2023 23:51:29,914 DEBUG: [/UNC - Baker Lab/SPATT PFAS Publication]  Writing files metadata to /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/export
02 Dec 2023 23:51:29,917 INFO : 
02 Dec 2023 23:51:29,917 INFO : Experiment export completed successfully.
02 Dec 2023 23:51:29,917 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
02 Dec 2023 23:51:29,942 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
02 Dec 2023 23:51:29,942 INFO : 
02 Dec 2023 23:51:29,942 INFO : Importing experiment.
02 Dec 2023 23:51:29,944 DEBUG: [/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication] Importing folder properties from: /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/export
02 Dec 2023 23:51:29,945 INFO : Loading folder properties (folder type, settings and active modules)
02 Dec 2023 23:51:29,945 DEBUG: [/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication] Folder type: Targeted MS
02 Dec 2023 23:51:29,945 DEBUG: [/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication] Active modules: Wiki, Core, PanoramaPublic, Experiment, Issues, FileContent, Assay, API, TargetedMS, MS2, Query, Pipeline, Announcements, Search
02 Dec 2023 23:51:30,019 INFO : Done importing folder properties (folder type, settings and active modules)
02 Dec 2023 23:51:30,020 INFO : Loading container specific module properties
02 Dec 2023 23:51:30,024 INFO : Done importing container specific module properties
02 Dec 2023 23:51:30,025 INFO : Loading etl definitions
02 Dec 2023 23:51:30,026 INFO : Loading wikis
02 Dec 2023 23:51:30,029 INFO : 0 wikis imported
02 Dec 2023 23:51:30,029 INFO : Done importing wikis
02 Dec 2023 23:51:30,031 INFO : Starting Data Class Importer
02 Dec 2023 23:51:30,031 INFO : No types XAR file to process.
02 Dec 2023 23:51:30,031 INFO : Finished Data Class Importer
02 Dec 2023 23:51:30,033 INFO : Starting to copy files
02 Dec 2023 23:51:30,033 INFO : Copied 0 files
02 Dec 2023 23:51:30,033 INFO : Ensuring exp.data rows exist for imported files
02 Dec 2023 23:51:30,105 INFO : Starting Sample Type Importer
02 Dec 2023 23:51:30,105 INFO : No types XAR file to process.
02 Dec 2023 23:51:30,105 INFO : Finished Sample Type Importer
02 Dec 2023 23:51:30,106 INFO : Loading xar
02 Dec 2023 23:51:33,474 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-12369:TargetedMS.ImportSkyZip'
02 Dec 2023 23:51:33,476 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-12369:TargetedMS.ImportSkyZip.Core'
02 Dec 2023 23:51:33,478 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-12369:TargetedMS.ImportSkyZip.Output'
02 Dec 2023 23:51:33,478 DEBUG: Protocol import complete
02 Dec 2023 23:51:33,479 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-12369:Evaluation+of+Solid+Phase+Adsorption+Toxin+Tracking+%28SPATTs%29+for+passive+monitoring+of+Per-+and+Polyfluoroalkyl+Substances+%28PFAS%29+using+Ion+Mobility+Spectrometry-Mass+Spectrometry+%28IMS-MS%29'
02 Dec 2023 23:51:33,479 DEBUG: Experiment/Run group import complete
02 Dec 2023 23:51:33,488 DEBUG: Protocol action set import complete
02 Dec 2023 23:51:33,496 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-12369:TargetedMS.ImportSkyZip'
02 Dec 2023 23:51:33,502 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-12369:94415c9f-7295-103c-bc68-fea6ddf5ace0'
02 Dec 2023 23:51:33,505 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-12369:94415b8c-7295-103c-bc68-fea6ddf5ace0'
02 Dec 2023 23:51:33,505 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-12369:TargetedMS.ImportSkyZip.Core'
02 Dec 2023 23:51:33,508 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-12369:TargetedMS.ImportSkyZip.Output'
02 Dec 2023 23:51:33,508 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-12369:9441643c-7295-103c-bc68-fea6ddf5ace0'
02 Dec 2023 23:51:33,513 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-12369:TargetedMS.ImportSkyZip'
02 Dec 2023 23:51:33,516 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-12369:33b79b95-7296-103c-bc68-fea6ddf5ace0'
02 Dec 2023 23:51:33,519 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-12369:33b79b52-7296-103c-bc68-fea6ddf5ace0'
02 Dec 2023 23:51:33,519 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-12369:TargetedMS.ImportSkyZip.Core'
02 Dec 2023 23:51:33,521 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-12369:TargetedMS.ImportSkyZip.Output'
02 Dec 2023 23:51:33,521 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-12369:33b79da4-7296-103c-bc68-fea6ddf5ace0'
02 Dec 2023 23:51:33,525 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-12369:TargetedMS.ImportSkyZip'
02 Dec 2023 23:51:33,529 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-12369:33b7a96c-7296-103c-bc68-fea6ddf5ace0'
02 Dec 2023 23:51:33,532 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-12369:33b7a8af-7296-103c-bc68-fea6ddf5ace0'
02 Dec 2023 23:51:33,532 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-12369:TargetedMS.ImportSkyZip.Core'
02 Dec 2023 23:51:33,533 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-12369:TargetedMS.ImportSkyZip.Output'
02 Dec 2023 23:51:33,534 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-12369:33b7ab10-7296-103c-bc68-fea6ddf5ace0'
02 Dec 2023 23:51:33,536 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2023/UNC%20Baker%20Lab%20-%20SPATT%20PFAS%20Publication/@files/export/xar/experiments_and_runs.xar.exploded/Run178376/September%2021%20Import%20V1%20all%20samples%20(Neg%20mode%20only)_2023-12-01_11-35-34/September%2021%20Import%20V1%20all%20samples%20(Neg%20mode%20only).skyd into the system
02 Dec 2023 23:51:33,537 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2023/UNC%20Baker%20Lab%20-%20SPATT%20PFAS%20Publication/@files/export/xar/experiments_and_runs.xar.exploded/Run178376/September%2021%20Import%20V1%20all%20samples%20(Neg%20mode%20only)_2023-12-01_11-35-34/September%2021%20Import%20V1%20all%20samples%20(Neg%20mode%20only).skyd into the system
02 Dec 2023 23:51:33,537 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2023/UNC%20Baker%20Lab%20-%20SPATT%20PFAS%20Publication/@files/export/xar/experiments_and_runs.xar.exploded/Run178376/September%2021%20Import%20V1%20all%20samples%20(Neg%20mode%20only)_2023-12-01_11-35-34.sky.zip into the system
02 Dec 2023 23:51:33,537 INFO : Starting import from September 21 Import V1 all samples (Neg mode only)_2023-12-01_11-35-34.sky.zip
02 Dec 2023 23:51:33,541 INFO : Starting to import Skyline document from September 21 Import V1 all samples (Neg mode only)_2023-12-01_11-35-34.sky.zip
02 Dec 2023 23:51:33,549 INFO : Expanding September 21 Import V1 all samples (Neg mode only).skyd
02 Dec 2023 23:51:34,462 INFO : Expanding September 21 Import V1 all samples (Neg mode only).sky.view
02 Dec 2023 23:51:34,462 INFO : Expanding September 21 Import V1 all samples (Neg mode only).sky
02 Dec 2023 23:51:34,490 INFO : Expanding September 21 Import V1 all samples (Neg mode only).skyl
02 Dec 2023 23:51:34,609 INFO : 1% Done
02 Dec 2023 23:51:35,211 DEBUG: Starting to load chromatogram headers
02 Dec 2023 23:51:35,258 DEBUG: Done loading chromatogram headers
02 Dec 2023 23:51:35,464 INFO : Inserting PFAS (-) PFSA
02 Dec 2023 23:51:35,515 INFO : 2% Done
02 Dec 2023 23:51:35,605 INFO : 3% Done
02 Dec 2023 23:51:35,656 INFO : 5% Done
02 Dec 2023 23:51:35,718 INFO : 6% Done
02 Dec 2023 23:51:35,821 INFO : 7% Done
02 Dec 2023 23:51:35,864 INFO : 8% Done
02 Dec 2023 23:51:35,909 INFO : 10% Done
02 Dec 2023 23:51:36,011 INFO : 11% Done
02 Dec 2023 23:51:36,091 INFO : 12% Done
02 Dec 2023 23:51:36,130 DEBUG: Total molecules inserted: 14
02 Dec 2023 23:51:36,130 INFO : Inserting PFAS (-) PFCA
02 Dec 2023 23:51:36,138 INFO : 14% Done
02 Dec 2023 23:51:36,287 INFO : 16% Done
02 Dec 2023 23:51:36,352 INFO : 18% Done
02 Dec 2023 23:51:36,475 INFO : 20% Done
02 Dec 2023 23:51:36,533 INFO : 21% Done
02 Dec 2023 23:51:36,597 INFO : 24% Done
02 Dec 2023 23:51:36,763 INFO : 27% Done
02 Dec 2023 23:51:36,880 INFO : 30% Done
02 Dec 2023 23:51:36,992 INFO : 31% Done
02 Dec 2023 23:51:37,071 INFO : 34% Done
02 Dec 2023 23:51:37,190 INFO : 35% Done
02 Dec 2023 23:51:37,268 INFO : 36% Done
02 Dec 2023 23:51:37,342 DEBUG: Total molecules inserted: 14
02 Dec 2023 23:51:37,342 INFO : Inserting PFAS (-) FT
02 Dec 2023 23:51:37,347 INFO : 37% Done
02 Dec 2023 23:51:37,398 INFO : 38% Done
02 Dec 2023 23:51:37,475 INFO : 39% Done
02 Dec 2023 23:51:37,562 INFO : 40% Done
02 Dec 2023 23:51:37,606 INFO : 41% Done
02 Dec 2023 23:51:37,657 INFO : 42% Done
02 Dec 2023 23:51:37,695 DEBUG: Total molecules inserted: 8
02 Dec 2023 23:51:37,695 INFO : Inserting PFAS (-) PFASA
02 Dec 2023 23:51:37,739 INFO : 43% Done
02 Dec 2023 23:51:37,788 INFO : 44% Done
02 Dec 2023 23:51:37,874 INFO : 45% Done
02 Dec 2023 23:51:37,921 INFO : 46% Done
02 Dec 2023 23:51:38,004 INFO : 47% Done
02 Dec 2023 23:51:38,051 INFO : 48% Done
02 Dec 2023 23:51:38,099 INFO : 49% Done
02 Dec 2023 23:51:38,145 INFO : 50% Done
02 Dec 2023 23:51:38,195 DEBUG: Total molecules inserted: 11
02 Dec 2023 23:51:38,195 INFO : Inserting PFAS (-) PFECA
02 Dec 2023 23:51:38,297 INFO : 51% Done
02 Dec 2023 23:51:38,349 INFO : 52% Done
02 Dec 2023 23:51:38,398 INFO : 53% Done
02 Dec 2023 23:51:38,448 INFO : 54% Done
02 Dec 2023 23:51:38,595 INFO : 55% Done
02 Dec 2023 23:51:38,648 INFO : 56% Done
02 Dec 2023 23:51:38,689 DEBUG: Total molecules inserted: 10
02 Dec 2023 23:51:38,689 INFO : Inserting PFAS (-) PFESA
02 Dec 2023 23:51:38,695 INFO : 57% Done
02 Dec 2023 23:51:38,747 INFO : 58% Done
02 Dec 2023 23:51:38,847 INFO : 59% Done
02 Dec 2023 23:51:38,936 INFO : 60% Done
02 Dec 2023 23:51:38,986 INFO : 61% Done
02 Dec 2023 23:51:39,035 INFO : 62% Done
02 Dec 2023 23:51:39,129 DEBUG: Total molecules inserted: 9
02 Dec 2023 23:51:39,129 INFO : Inserting PFAS (-) PFP
02 Dec 2023 23:51:39,135 INFO : 63% Done
02 Dec 2023 23:51:39,179 INFO : 64% Done
02 Dec 2023 23:51:39,277 INFO : 65% Done
02 Dec 2023 23:51:39,329 INFO : 66% Done
02 Dec 2023 23:51:39,416 DEBUG: Total molecules inserted: 6
02 Dec 2023 23:51:39,416 INFO : Inserting Microcystins
02 Dec 2023 23:51:39,425 INFO : 67% Done
02 Dec 2023 23:51:39,506 INFO : 69% Done
02 Dec 2023 23:51:39,590 INFO : 70% Done
02 Dec 2023 23:51:39,665 INFO : 71% Done
02 Dec 2023 23:51:39,739 INFO : 72% Done
02 Dec 2023 23:51:39,816 INFO : 74% Done
02 Dec 2023 23:51:39,974 INFO : 76% Done
02 Dec 2023 23:51:40,052 INFO : 77% Done
02 Dec 2023 23:51:40,096 INFO : 78% Done
02 Dec 2023 23:51:40,261 INFO : 79% Done
02 Dec 2023 23:51:40,303 INFO : 80% Done
02 Dec 2023 23:51:40,348 DEBUG: Total molecules inserted: 17
02 Dec 2023 23:51:40,350 INFO : Done parsing Skyline document.
02 Dec 2023 23:51:40,410 INFO : No group comparisons found.
02 Dec 2023 23:51:40,410 INFO : Calculating calibration curves
02 Dec 2023 23:51:40,410 DEBUG: Calculating calibration curve for PFAS (-) PFSA, 1 of 8
02 Dec 2023 23:51:40,517 INFO : 82% Done
02 Dec 2023 23:51:40,517 DEBUG: Calculating calibration curve for PFAS (-) PFCA, 2 of 8
02 Dec 2023 23:51:40,705 INFO : 85% Done
02 Dec 2023 23:51:40,705 DEBUG: Calculating calibration curve for PFAS (-) FT, 3 of 8
02 Dec 2023 23:51:40,759 INFO : 87% Done
02 Dec 2023 23:51:40,759 DEBUG: Calculating calibration curve for PFAS (-) PFASA, 4 of 8
02 Dec 2023 23:51:40,831 INFO : 89% Done
02 Dec 2023 23:51:40,831 DEBUG: Calculating calibration curve for PFAS (-) PFECA, 5 of 8
02 Dec 2023 23:51:40,897 INFO : 91% Done
02 Dec 2023 23:51:40,897 DEBUG: Calculating calibration curve for PFAS (-) PFESA, 6 of 8
02 Dec 2023 23:51:40,955 INFO : 94% Done
02 Dec 2023 23:51:40,955 DEBUG: Calculating calibration curve for PFAS (-) PFP, 7 of 8
02 Dec 2023 23:51:40,995 INFO : 96% Done
02 Dec 2023 23:51:40,995 DEBUG: Calculating calibration curve for Microcystins, 8 of 8
02 Dec 2023 23:51:41,174 INFO : 98% Done
02 Dec 2023 23:51:41,187 INFO : Done calculating calibration curves.
02 Dec 2023 23:51:41,246 INFO : Creating and populating temp tables for Proportion values
02 Dec 2023 23:51:41,426 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
02 Dec 2023 23:51:41,912 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
02 Dec 2023 23:51:42,166 INFO : Cleaning up temp tables
02 Dec 2023 23:51:42,491 INFO : Completed import of Skyline document from September 21 Import V1 all samples (Neg mode only)_2023-12-01_11-35-34.sky.zip
02 Dec 2023 23:51:42,493 INFO : 100% Done
02 Dec 2023 23:51:42,497 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2023/UNC%20Baker%20Lab%20-%20SPATT%20PFAS%20Publication/@files/export/xar/experiments_and_runs.xar.exploded/Run178376/September%2021%20Import%20V1%20all%20samples%20(Neg%20mode%20only)_2023-12-01_11-35-34.sky.zip into the system
02 Dec 2023 23:51:42,497 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2023/UNC%20Baker%20Lab%20-%20SPATT%20PFAS%20Publication/@files/export/xar/experiments_and_runs.xar.exploded/Run178378/September%2021%20Kaylie%20New%20Molecule%20Import%20v1%20(Filtered)_2023-12-01_11-40-01/September%2021%20Kaylie%20New%20Molecule%20Import%20v1%20(Filtered).skyd into the system
02 Dec 2023 23:51:42,497 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2023/UNC%20Baker%20Lab%20-%20SPATT%20PFAS%20Publication/@files/export/xar/experiments_and_runs.xar.exploded/Run178378/September%2021%20Kaylie%20New%20Molecule%20Import%20v1%20(Filtered)_2023-12-01_11-40-01/September%2021%20Kaylie%20New%20Molecule%20Import%20v1%20(Filtered).skyd into the system
02 Dec 2023 23:51:42,497 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2023/UNC%20Baker%20Lab%20-%20SPATT%20PFAS%20Publication/@files/export/xar/experiments_and_runs.xar.exploded/Run178378/September%2021%20Kaylie%20New%20Molecule%20Import%20v1%20(Filtered)_2023-12-01_11-40-01.sky.zip into the system
02 Dec 2023 23:51:42,498 INFO : Starting import from September 21 Kaylie New Molecule Import v1 (Filtered)_2023-12-01_11-40-01.sky.zip
02 Dec 2023 23:51:42,500 INFO : Starting to import Skyline document from September 21 Kaylie New Molecule Import v1 (Filtered)_2023-12-01_11-40-01.sky.zip
02 Dec 2023 23:51:42,501 INFO : Expanding September 21 Kaylie New Molecule Import v1 (Filtered).skyd
02 Dec 2023 23:51:42,578 INFO : Expanding September 21 Kaylie New Molecule Import v1 (Filtered).sky.view
02 Dec 2023 23:51:42,579 INFO : Expanding September 21 Kaylie New Molecule Import v1 (Filtered).sky
02 Dec 2023 23:51:42,584 INFO : Expanding September 21 Kaylie New Molecule Import v1 (Filtered).skyl
02 Dec 2023 23:51:42,593 INFO : 3% Done
02 Dec 2023 23:51:42,661 DEBUG: Starting to load chromatogram headers
02 Dec 2023 23:51:42,666 DEBUG: Done loading chromatogram headers
02 Dec 2023 23:51:42,911 INFO : Inserting Kaylies Novel PFAS
02 Dec 2023 23:51:42,916 INFO : 8% Done
02 Dec 2023 23:51:42,965 INFO : 13% Done
02 Dec 2023 23:51:43,010 INFO : 18% Done
02 Dec 2023 23:51:43,056 INFO : 22% Done
02 Dec 2023 23:51:43,099 INFO : 27% Done
02 Dec 2023 23:51:43,145 INFO : 32% Done
02 Dec 2023 23:51:43,190 INFO : 37% Done
02 Dec 2023 23:51:43,233 INFO : 42% Done
02 Dec 2023 23:51:43,276 INFO : 46% Done
02 Dec 2023 23:51:43,322 INFO : 51% Done
02 Dec 2023 23:51:43,369 INFO : 56% Done
02 Dec 2023 23:51:43,409 INFO : 61% Done
02 Dec 2023 23:51:43,458 INFO : 66% Done
02 Dec 2023 23:51:43,507 INFO : 70% Done
02 Dec 2023 23:51:43,553 INFO : 75% Done
02 Dec 2023 23:51:43,601 INFO : 80% Done
02 Dec 2023 23:51:43,641 DEBUG: Total molecules inserted: 16
02 Dec 2023 23:51:43,643 INFO : Done parsing Skyline document.
02 Dec 2023 23:51:43,703 INFO : No group comparisons found.
02 Dec 2023 23:51:43,703 INFO : Calculating calibration curves
02 Dec 2023 23:51:43,704 DEBUG: Calculating calibration curve for Kaylies Novel PFAS, 1 of 1
02 Dec 2023 23:51:43,810 INFO : 98% Done
02 Dec 2023 23:51:43,814 INFO : Done calculating calibration curves.
02 Dec 2023 23:51:43,935 INFO : Creating and populating temp tables for Proportion values
02 Dec 2023 23:51:44,061 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
02 Dec 2023 23:51:44,121 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
02 Dec 2023 23:51:44,162 INFO : Cleaning up temp tables
02 Dec 2023 23:51:44,412 INFO : Completed import of Skyline document from September 21 Kaylie New Molecule Import v1 (Filtered)_2023-12-01_11-40-01.sky.zip
02 Dec 2023 23:51:44,414 INFO : 100% Done
02 Dec 2023 23:51:44,417 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2023/UNC%20Baker%20Lab%20-%20SPATT%20PFAS%20Publication/@files/export/xar/experiments_and_runs.xar.exploded/Run178378/September%2021%20Kaylie%20New%20Molecule%20Import%20v1%20(Filtered)_2023-12-01_11-40-01.sky.zip into the system
02 Dec 2023 23:51:44,417 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2023/UNC%20Baker%20Lab%20-%20SPATT%20PFAS%20Publication/@files/export/xar/experiments_and_runs.xar.exploded/Run178379/September%2021%20Import%20V1%20(Samples%20with%20IS)%20w%20Cal%20Curve_Blanks%20Deleted_2023-12-01_11-40-59/September%2021%20Import%20V1%20(Samples%20with%20IS)%20w%20Cal%20Curve_Blanks%20Deleted.skyd into the system
02 Dec 2023 23:51:44,418 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2023/UNC%20Baker%20Lab%20-%20SPATT%20PFAS%20Publication/@files/export/xar/experiments_and_runs.xar.exploded/Run178379/September%2021%20Import%20V1%20(Samples%20with%20IS)%20w%20Cal%20Curve_Blanks%20Deleted_2023-12-01_11-40-59/September%2021%20Import%20V1%20(Samples%20with%20IS)%20w%20Cal%20Curve_Blanks%20Deleted.skyd into the system
02 Dec 2023 23:51:44,418 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2023/UNC%20Baker%20Lab%20-%20SPATT%20PFAS%20Publication/@files/export/xar/experiments_and_runs.xar.exploded/Run178379/September%2021%20Import%20V1%20(Samples%20with%20IS)%20w%20Cal%20Curve_Blanks%20Deleted_2023-12-01_11-40-59.sky.zip into the system
02 Dec 2023 23:51:44,419 INFO : Starting import from September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted_2023-12-01_11-40-59.sky.zip
02 Dec 2023 23:51:44,421 INFO : Starting to import Skyline document from September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted_2023-12-01_11-40-59.sky.zip
02 Dec 2023 23:51:44,422 INFO : Expanding September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted.skyd
02 Dec 2023 23:51:45,255 INFO : Expanding September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted.sky.view
02 Dec 2023 23:51:45,257 INFO : Expanding September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted.sky
02 Dec 2023 23:51:45,264 INFO : Expanding September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted.skyl
02 Dec 2023 23:51:45,272 INFO : 2% Done
02 Dec 2023 23:51:45,950 DEBUG: Starting to load chromatogram headers
02 Dec 2023 23:51:45,992 DEBUG: Done loading chromatogram headers
02 Dec 2023 23:51:46,235 INFO : Inserting PFAS (-) PFSA
02 Dec 2023 23:51:46,242 INFO : 8% Done
02 Dec 2023 23:51:46,298 INFO : 14% Done
02 Dec 2023 23:51:46,352 INFO : 21% Done
02 Dec 2023 23:51:46,400 DEBUG: Total molecules inserted: 3
02 Dec 2023 23:51:46,400 INFO : Inserting PFAS (-) PFCA
02 Dec 2023 23:51:46,405 INFO : 26% Done
02 Dec 2023 23:51:46,468 INFO : 31% Done
02 Dec 2023 23:51:46,535 INFO : 38% Done
02 Dec 2023 23:51:46,588 INFO : 43% Done
02 Dec 2023 23:51:46,641 INFO : 50% Done
02 Dec 2023 23:51:46,693 INFO : 55% Done
02 Dec 2023 23:51:46,746 INFO : 62% Done
02 Dec 2023 23:51:46,798 INFO : 68% Done
02 Dec 2023 23:51:46,850 INFO : 74% Done
02 Dec 2023 23:51:46,902 INFO : 80% Done
02 Dec 2023 23:51:46,951 DEBUG: Total molecules inserted: 10
02 Dec 2023 23:51:46,953 INFO : Done parsing Skyline document.
02 Dec 2023 23:51:47,011 INFO : No group comparisons found.
02 Dec 2023 23:51:47,011 INFO : Calculating calibration curves
02 Dec 2023 23:51:47,012 DEBUG: Calculating calibration curve for PFAS (-) PFSA, 1 of 2
02 Dec 2023 23:51:47,041 INFO : 89% Done
02 Dec 2023 23:51:47,041 DEBUG: Calculating calibration curve for PFAS (-) PFCA, 2 of 2
02 Dec 2023 23:51:47,144 INFO : 98% Done
02 Dec 2023 23:51:47,289 INFO : Done calculating calibration curves.
02 Dec 2023 23:51:47,377 INFO : Creating and populating temp tables for Proportion values
02 Dec 2023 23:51:47,498 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
02 Dec 2023 23:51:47,580 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
02 Dec 2023 23:51:47,611 INFO : Cleaning up temp tables
02 Dec 2023 23:51:47,862 INFO : Completed import of Skyline document from September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted_2023-12-01_11-40-59.sky.zip
02 Dec 2023 23:51:47,864 INFO : 100% Done
02 Dec 2023 23:51:47,867 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2023/UNC%20Baker%20Lab%20-%20SPATT%20PFAS%20Publication/@files/export/xar/experiments_and_runs.xar.exploded/Run178379/September%2021%20Import%20V1%20(Samples%20with%20IS)%20w%20Cal%20Curve_Blanks%20Deleted_2023-12-01_11-40-59.sky.zip into the system
02 Dec 2023 23:51:47,879 INFO : Done importing xar
02 Dec 2023 23:51:47,880 INFO : Loading pages and webpart properties
02 Dec 2023 23:51:47,936 INFO : Done importing 3 page(s) with 5 webpart(s)
02 Dec 2023 23:51:47,936 INFO : Loading File Browser config
02 Dec 2023 23:51:47,936 INFO : Done importing File Browser config
02 Dec 2023 23:51:47,937 INFO : Starting Sample Status Data import
02 Dec 2023 23:51:47,937 INFO : No sample types XAR file to process.
02 Dec 2023 23:51:47,937 INFO : Finished importing Sample Status Data
02 Dec 2023 23:51:47,941 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
02 Dec 2023 23:51:47,944 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
02 Dec 2023 23:51:47,944 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
02 Dec 2023 23:51:47,945 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
02 Dec 2023 23:51:47,945 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
02 Dec 2023 23:51:47,945 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
02 Dec 2023 23:51:47,947 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
02 Dec 2023 23:51:47,952 INFO : Moving files to folder /Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication and creating symlinks
02 Dec 2023 23:51:47,969 DEBUG: Directory created: /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/September 21 Import V1 all samples (Neg mode only)_2023-12-01_11-35-34
02 Dec 2023 23:51:47,970 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/SPATT PFAS Publication/@files/September 21 Import V1 all samples (Neg mode only)_2023-12-01_11-35-34/September 21 Import V1 all samples (Neg mode only).skyl to /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/September 21 Import V1 all samples (Neg mode only)_2023-12-01_11-35-34/September 21 Import V1 all samples (Neg mode only).skyl
02 Dec 2023 23:51:47,971 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/SPATT PFAS Publication/@files/September 21 Import V1 all samples (Neg mode only)_2023-12-01_11-35-34/September 21 Import V1 all samples (Neg mode only).skyl targeting /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/September 21 Import V1 all samples (Neg mode only)_2023-12-01_11-35-34/September 21 Import V1 all samples (Neg mode only).skyl
02 Dec 2023 23:51:47,972 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/SPATT PFAS Publication/@files/September 21 Import V1 all samples (Neg mode only)_2023-12-01_11-35-34/September 21 Import V1 all samples (Neg mode only).sky to /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/September 21 Import V1 all samples (Neg mode only)_2023-12-01_11-35-34/September 21 Import V1 all samples (Neg mode only).sky
02 Dec 2023 23:51:47,973 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/SPATT PFAS Publication/@files/September 21 Import V1 all samples (Neg mode only)_2023-12-01_11-35-34/September 21 Import V1 all samples (Neg mode only).sky targeting /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/September 21 Import V1 all samples (Neg mode only)_2023-12-01_11-35-34/September 21 Import V1 all samples (Neg mode only).sky
02 Dec 2023 23:51:47,974 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/SPATT PFAS Publication/@files/September 21 Import V1 all samples (Neg mode only)_2023-12-01_11-35-34/September 21 Import V1 all samples (Neg mode only).sky.view to /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/September 21 Import V1 all samples (Neg mode only)_2023-12-01_11-35-34/September 21 Import V1 all samples (Neg mode only).sky.view
02 Dec 2023 23:51:47,975 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/SPATT PFAS Publication/@files/September 21 Import V1 all samples (Neg mode only)_2023-12-01_11-35-34/September 21 Import V1 all samples (Neg mode only).sky.view targeting /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/September 21 Import V1 all samples (Neg mode only)_2023-12-01_11-35-34/September 21 Import V1 all samples (Neg mode only).sky.view
02 Dec 2023 23:51:47,976 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/SPATT PFAS Publication/@files/September 21 Import V1 all samples (Neg mode only)_2023-12-01_11-35-34/September 21 Import V1 all samples (Neg mode only).skyd to /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/September 21 Import V1 all samples (Neg mode only)_2023-12-01_11-35-34/September 21 Import V1 all samples (Neg mode only).skyd
02 Dec 2023 23:51:47,977 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/SPATT PFAS Publication/@files/September 21 Import V1 all samples (Neg mode only)_2023-12-01_11-35-34/September 21 Import V1 all samples (Neg mode only).skyd targeting /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/September 21 Import V1 all samples (Neg mode only)_2023-12-01_11-35-34/September 21 Import V1 all samples (Neg mode only).skyd
02 Dec 2023 23:51:47,978 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/SPATT PFAS Publication/@files/September 21 Kaylie New Molecule Import v1 (Filtered)_2023-12-01_11-40-01.sky.zip to /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/September 21 Kaylie New Molecule Import v1 (Filtered)_2023-12-01_11-40-01.sky.zip
02 Dec 2023 23:51:47,979 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/SPATT PFAS Publication/@files/September 21 Kaylie New Molecule Import v1 (Filtered)_2023-12-01_11-40-01.sky.zip targeting /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/September 21 Kaylie New Molecule Import v1 (Filtered)_2023-12-01_11-40-01.sky.zip
02 Dec 2023 23:51:47,981 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/SPATT PFAS Publication/@files/September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted_2023-12-01_11-40-59.sky.zip to /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted_2023-12-01_11-40-59.sky.zip
02 Dec 2023 23:51:48,000 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/SPATT PFAS Publication/@files/September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted_2023-12-01_11-40-59.sky.zip targeting /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted_2023-12-01_11-40-59.sky.zip
02 Dec 2023 23:51:48,001 DEBUG: Directory created: /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/RawFiles
02 Dec 2023 23:51:48,001 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/SPATT PFAS Publication/@files/September 21 Import V1 all samples (Neg mode only)_2023-12-01_11-35-34.sky.zip to /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/September 21 Import V1 all samples (Neg mode only)_2023-12-01_11-35-34.sky.zip
02 Dec 2023 23:51:48,002 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/SPATT PFAS Publication/@files/September 21 Import V1 all samples (Neg mode only)_2023-12-01_11-35-34.sky.zip targeting /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/September 21 Import V1 all samples (Neg mode only)_2023-12-01_11-35-34.sky.zip
02 Dec 2023 23:51:48,003 DEBUG: Directory created: /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted_2023-12-01_11-40-59
02 Dec 2023 23:51:48,004 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/SPATT PFAS Publication/@files/September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted_2023-12-01_11-40-59/September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted.skyd to /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted_2023-12-01_11-40-59/September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted.skyd
02 Dec 2023 23:51:48,018 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/SPATT PFAS Publication/@files/September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted_2023-12-01_11-40-59/September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted.skyd targeting /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted_2023-12-01_11-40-59/September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted.skyd
02 Dec 2023 23:51:48,019 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/SPATT PFAS Publication/@files/September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted_2023-12-01_11-40-59/September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted.skyl to /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted_2023-12-01_11-40-59/September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted.skyl
02 Dec 2023 23:51:48,020 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/SPATT PFAS Publication/@files/September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted_2023-12-01_11-40-59/September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted.skyl targeting /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted_2023-12-01_11-40-59/September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted.skyl
02 Dec 2023 23:51:48,021 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/SPATT PFAS Publication/@files/September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted_2023-12-01_11-40-59/September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted.sky to /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted_2023-12-01_11-40-59/September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted.sky
02 Dec 2023 23:51:48,022 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/SPATT PFAS Publication/@files/September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted_2023-12-01_11-40-59/September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted.sky targeting /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted_2023-12-01_11-40-59/September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted.sky
02 Dec 2023 23:51:48,023 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/SPATT PFAS Publication/@files/September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted_2023-12-01_11-40-59/September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted.sky.view to /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted_2023-12-01_11-40-59/September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted.sky.view
02 Dec 2023 23:51:48,023 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/SPATT PFAS Publication/@files/September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted_2023-12-01_11-40-59/September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted.sky.view targeting /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted_2023-12-01_11-40-59/September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted.sky.view
02 Dec 2023 23:51:48,024 DEBUG: Directory created: /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/September 21 Kaylie New Molecule Import v1 (Filtered)_2023-12-01_11-40-01
02 Dec 2023 23:51:48,025 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/SPATT PFAS Publication/@files/September 21 Kaylie New Molecule Import v1 (Filtered)_2023-12-01_11-40-01/September 21 Kaylie New Molecule Import v1 (Filtered).skyd to /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/September 21 Kaylie New Molecule Import v1 (Filtered)_2023-12-01_11-40-01/September 21 Kaylie New Molecule Import v1 (Filtered).skyd
02 Dec 2023 23:51:48,026 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/SPATT PFAS Publication/@files/September 21 Kaylie New Molecule Import v1 (Filtered)_2023-12-01_11-40-01/September 21 Kaylie New Molecule Import v1 (Filtered).skyd targeting /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/September 21 Kaylie New Molecule Import v1 (Filtered)_2023-12-01_11-40-01/September 21 Kaylie New Molecule Import v1 (Filtered).skyd
02 Dec 2023 23:51:48,027 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/SPATT PFAS Publication/@files/September 21 Kaylie New Molecule Import v1 (Filtered)_2023-12-01_11-40-01/September 21 Kaylie New Molecule Import v1 (Filtered).sky to /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/September 21 Kaylie New Molecule Import v1 (Filtered)_2023-12-01_11-40-01/September 21 Kaylie New Molecule Import v1 (Filtered).sky
02 Dec 2023 23:51:48,028 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/SPATT PFAS Publication/@files/September 21 Kaylie New Molecule Import v1 (Filtered)_2023-12-01_11-40-01/September 21 Kaylie New Molecule Import v1 (Filtered).sky targeting /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/September 21 Kaylie New Molecule Import v1 (Filtered)_2023-12-01_11-40-01/September 21 Kaylie New Molecule Import v1 (Filtered).sky
02 Dec 2023 23:51:48,029 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/SPATT PFAS Publication/@files/September 21 Kaylie New Molecule Import v1 (Filtered)_2023-12-01_11-40-01/September 21 Kaylie New Molecule Import v1 (Filtered).skyl to /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/September 21 Kaylie New Molecule Import v1 (Filtered)_2023-12-01_11-40-01/September 21 Kaylie New Molecule Import v1 (Filtered).skyl
02 Dec 2023 23:51:48,030 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/SPATT PFAS Publication/@files/September 21 Kaylie New Molecule Import v1 (Filtered)_2023-12-01_11-40-01/September 21 Kaylie New Molecule Import v1 (Filtered).skyl targeting /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/September 21 Kaylie New Molecule Import v1 (Filtered)_2023-12-01_11-40-01/September 21 Kaylie New Molecule Import v1 (Filtered).skyl
02 Dec 2023 23:51:48,031 DEBUG: Moved file /data/labkey/files/UNC - Baker Lab/SPATT PFAS Publication/@files/September 21 Kaylie New Molecule Import v1 (Filtered)_2023-12-01_11-40-01/September 21 Kaylie New Molecule Import v1 (Filtered).sky.view to /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/September 21 Kaylie New Molecule Import v1 (Filtered)_2023-12-01_11-40-01/September 21 Kaylie New Molecule Import v1 (Filtered).sky.view
02 Dec 2023 23:51:48,032 DEBUG: Created symlink /data/labkey/files/UNC - Baker Lab/SPATT PFAS Publication/@files/September 21 Kaylie New Molecule Import v1 (Filtered)_2023-12-01_11-40-01/September 21 Kaylie New Molecule Import v1 (Filtered).sky.view targeting /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/September 21 Kaylie New Molecule Import v1 (Filtered)_2023-12-01_11-40-01/September 21 Kaylie New Molecule Import v1 (Filtered).sky.view
02 Dec 2023 23:51:48,032 INFO : Aligning data files urls in folder: /Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication
02 Dec 2023 23:51:48,034 DEBUG: Setting filePathRoot on copied run: September 21 Import V1 all samples (Neg mode only)_2023-12-01_11-35-34.sky.zip to: /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files
02 Dec 2023 23:51:48,036 DEBUG: Setting dataFileUri on copied data: September 21 Import V1 all samples (Neg mode only).skyd to: /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/September 21 Import V1 all samples (Neg mode only)_2023-12-01_11-35-34/September 21 Import V1 all samples (Neg mode only).skyd
02 Dec 2023 23:51:48,038 DEBUG: Setting dataFileUri on copied data: September 21 Import V1 all samples (Neg mode only)_2023-12-01_11-35-34.sky.zip to: /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/September 21 Import V1 all samples (Neg mode only)_2023-12-01_11-35-34.sky.zip
02 Dec 2023 23:51:48,039 DEBUG: Setting filePathRoot on copied run: September 21 Kaylie New Molecule Import v1 (Filtered)_2023-12-01_11-40-01.sky.zip to: /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files
02 Dec 2023 23:51:48,042 DEBUG: Setting dataFileUri on copied data: September 21 Kaylie New Molecule Import v1 (Filtered)_2023-12-01_11-40-01.sky.zip to: /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/September 21 Kaylie New Molecule Import v1 (Filtered)_2023-12-01_11-40-01.sky.zip
02 Dec 2023 23:51:48,044 DEBUG: Setting dataFileUri on copied data: September 21 Kaylie New Molecule Import v1 (Filtered).skyd to: /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/September 21 Kaylie New Molecule Import v1 (Filtered)_2023-12-01_11-40-01/September 21 Kaylie New Molecule Import v1 (Filtered).skyd
02 Dec 2023 23:51:48,045 DEBUG: Setting filePathRoot on copied run: September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted_2023-12-01_11-40-59.sky.zip to: /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files
02 Dec 2023 23:51:48,047 DEBUG: Setting dataFileUri on copied data: September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted_2023-12-01_11-40-59.sky.zip to: /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted_2023-12-01_11-40-59.sky.zip
02 Dec 2023 23:51:48,049 DEBUG: Setting dataFileUri on copied data: September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted.skyd to: /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted_2023-12-01_11-40-59/September 21 Import V1 (Samples with IS) w Cal Curve_Blanks Deleted.skyd
02 Dec 2023 23:51:48,049 INFO : Importing files metadata.
02 Dec 2023 23:51:48,049 DEBUG: [/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication]  Reading files metadata from /data/labkey/files/Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication/@files/export
02 Dec 2023 23:51:48,050 INFO : 
02 Dec 2023 23:51:48,050 INFO : Experiment import completed successfully.
02 Dec 2023 23:51:48,050 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
02 Dec 2023 23:51:48,070 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
02 Dec 2023 23:51:48,070 INFO : 
02 Dec 2023 23:51:48,070 INFO : Checking for library folders.
02 Dec 2023 23:51:48,071 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
02 Dec 2023 23:51:48,086 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
02 Dec 2023 23:51:48,086 INFO : 
02 Dec 2023 23:51:48,086 INFO : Finishing up experiment copy.
02 Dec 2023 23:51:48,088 INFO : Updating TargetedMS experiment entry in target folder /Panorama Public/2023/UNC Baker Lab - SPATT PFAS Publication
02 Dec 2023 23:51:48,088 INFO : Setting version on new experiment to 1
02 Dec 2023 23:51:48,091 INFO : Updating permanent link to point to the new copy of the data.
02 Dec 2023 23:51:48,096 INFO : Removing copy permissions given to Panorama Public
02 Dec 2023 23:51:48,108 INFO : Adding read permissions to all users that are folder admins in the source folder.
02 Dec 2023 23:51:48,109 INFO : Assigning ReaderRole to jndodds@unc.edu
02 Dec 2023 23:51:48,109 INFO : Assigning ReaderRole to rlberes@unc.edu
02 Dec 2023 23:51:48,109 INFO : Assigning ReaderRole to akstewar@ncsu.edu
02 Dec 2023 23:51:48,109 INFO : Assigning ReaderRole to mrfoster@ncsu.edu
02 Dec 2023 23:51:48,109 INFO : Assigning ReaderRole to erinmsb@unc.edu
02 Dec 2023 23:51:48,109 INFO : Assigning ReaderRole to melanie.odenkirk@colostate.edu
02 Dec 2023 23:51:48,109 INFO : Assigning ReaderRole to kikirkwo@ncsu.edu
02 Dec 2023 23:51:48,109 INFO : Assigning ReaderRole to aboatman@unc.edu
02 Dec 2023 23:51:48,109 INFO : Assigning PanoramaPublicSubmitterRole to jndodds@unc.edu
02 Dec 2023 23:51:48,109 INFO : Assigning PanoramaPublicSubmitterRole to erinmsb@unc.edu
02 Dec 2023 23:51:48,118 INFO : User jndodds@unc.edu is already a member of group Panorama Public Submitters
02 Dec 2023 23:51:48,118 INFO : User erinmsb@unc.edu is already a member of group Panorama Public Submitters
02 Dec 2023 23:51:48,118 INFO : Updating the 'Raw Data' tab configuration
02 Dec 2023 23:51:48,119 INFO : Making folder public.
02 Dec 2023 23:51:48,128 INFO : Hiding the Data Pipeline tab.
02 Dec 2023 23:51:48,132 INFO : Updating Submission. Setting copiedExperimentId to 1733
02 Dec 2023 23:51:49,692 INFO : Assigning a DOI.
02 Dec 2023 23:51:50,574 INFO : Assigned DOI: 10.6069/t12a-k683
02 Dec 2023 23:51:50,607 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'