23 Jul 2023 10:52:20,736 INFO : Copying experiment "Quantitative Measurement of Secretory Protein Mistargeting by Proximity Labeling and Parallel Reaction Monitoring" from folder /UC Riverside - Genereux Lab/Mistargeting Assay Data to /Panorama Public/2023/UC Riverside Genereux Lab - Mistargeting Assay Data
23 Jul 2023 10:52:20,736 INFO : =======================================
23 Jul 2023 10:52:20,753 DEBUG: Resetting Job ID: 389d6bb7-0baf-103c-afc6-fea6ddf51ba4
23 Jul 2023 10:52:20,772 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
23 Jul 2023 10:52:20,772 INFO :
23 Jul 2023 10:52:20,772 INFO : Exporting experiment.
23 Jul 2023 10:58:35,629 INFO : Exporting files metadata.
23 Jul 2023 10:58:35,630 DEBUG: [/UC Riverside - Genereux Lab/Mistargeting Assay Data] Writing files metadata to /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/UC Riverside Genereux Lab - Mistargeting Assay Data_389d6b95-0baf-103c-afc6-fea6ddf51ba4/_temp__2023-07-23_10-52-20/export
23 Jul 2023 10:58:35,723 INFO :
23 Jul 2023 10:58:35,723 INFO : Experiment export completed successfully.
23 Jul 2023 10:58:35,723 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
23 Jul 2023 10:58:35,746 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
23 Jul 2023 10:58:35,746 INFO :
23 Jul 2023 10:58:35,746 INFO : Importing experiment.
23 Jul 2023 10:58:35,747 DEBUG: [/Panorama Public/2023/UC Riverside Genereux Lab - Mistargeting Assay Data] Importing folder properties from: /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/UC Riverside Genereux Lab - Mistargeting Assay Data_389d6b95-0baf-103c-afc6-fea6ddf51ba4/_temp__2023-07-23_10-52-20/export
23 Jul 2023 10:58:35,748 INFO : Loading folder properties (folder type, settings and active modules)
23 Jul 2023 10:58:35,748 DEBUG: [/Panorama Public/2023/UC Riverside Genereux Lab - Mistargeting Assay Data] Folder type: Targeted MS
23 Jul 2023 10:58:35,748 DEBUG: [/Panorama Public/2023/UC Riverside Genereux Lab - Mistargeting Assay Data] Active modules: PanoramaPublic, Wiki, Experiment, API, Query, Announcements, Pipeline, Assay, MS2, Core, Search, FileContent, Issues, TargetedMS
23 Jul 2023 10:58:35,812 INFO : Done importing folder properties (folder type, settings and active modules)
23 Jul 2023 10:58:35,813 INFO : Loading container specific module properties
23 Jul 2023 10:58:35,816 INFO : Done importing container specific module properties
23 Jul 2023 10:58:35,817 INFO : Loading etl definitions
23 Jul 2023 10:58:35,818 INFO : Loading wikis
23 Jul 2023 10:58:35,868 INFO : 1 wiki imported
23 Jul 2023 10:58:35,868 INFO : Done importing wikis
23 Jul 2023 10:58:35,868 INFO : Starting to copy files
23 Jul 2023 11:00:39,023 INFO : 71 files copied, now copying ZL-II-37-2_ZTg_AP_5.raw
23 Jul 2023 11:02:39,111 INFO : 136 files copied, now copying ZL-II-64-ZTm_230203193948.raw
23 Jul 2023 11:03:28,681 INFO : 164 files copied, now copying Velos.skyd
23 Jul 2023 11:03:44,790 INFO : 172 files copied, now copying VelosPro.skyl
23 Jul 2023 11:04:01,307 INFO : Copied 180 files
23 Jul 2023 11:04:01,307 INFO : Ensuring exp.data rows exist for imported files
23 Jul 2023 11:04:01,937 INFO : Starting Sample Type and Data Class import
23 Jul 2023 11:04:01,937 INFO : No types XAR file to process.
23 Jul 2023 11:04:01,937 INFO : Finished importing Sample Types and Data Classes
23 Jul 2023 11:04:01,938 INFO : Loading xar
23 Jul 2023 11:04:06,910 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-11904:TargetedMS.ImportSkyZip'
23 Jul 2023 11:04:06,912 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-11904:TargetedMS.ImportSkyZip.Core'
23 Jul 2023 11:04:06,913 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-11904:TargetedMS.ImportSkyZip.Output'
23 Jul 2023 11:04:06,913 DEBUG: Protocol import complete
23 Jul 2023 11:04:06,915 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-11904:Quantitative+Measurement+of+Secretory+Protein+Mistargeting+by+Proximity+Labeling+and+Parallel+Reaction+Monitoring'
23 Jul 2023 11:04:06,915 DEBUG: Experiment/Run group import complete
23 Jul 2023 11:04:06,924 DEBUG: Protocol action set import complete
23 Jul 2023 11:04:06,948 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11904:TargetedMS.ImportSkyZip'
23 Jul 2023 11:04:06,954 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11904:b469b199-07e3-103c-afc6-fea6ddf51ba4'
23 Jul 2023 11:04:06,957 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11904:49bacae1-07e3-103c-afc6-fea6ddf51ba4'
23 Jul 2023 11:04:06,957 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11904:TargetedMS.ImportSkyZip.Core'
23 Jul 2023 11:04:06,960 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11904:TargetedMS.ImportSkyZip.Output'
23 Jul 2023 11:04:06,960 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11904:b469b3a1-07e3-103c-afc6-fea6ddf51ba4'
23 Jul 2023 11:04:06,966 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11904:TargetedMS.ImportSkyZip'
23 Jul 2023 11:04:06,970 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11904:b469b6c4-07e3-103c-afc6-fea6ddf51ba4'
23 Jul 2023 11:04:06,973 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11904:a011fd92-07da-103c-afc6-fea6ddf51ba4'
23 Jul 2023 11:04:06,973 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11904:TargetedMS.ImportSkyZip.Core'
23 Jul 2023 11:04:06,975 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11904:TargetedMS.ImportSkyZip.Output'
23 Jul 2023 11:04:06,975 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11904:b469ba80-07e3-103c-afc6-fea6ddf51ba4'
23 Jul 2023 11:04:06,977 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/UC%20Riverside%20Genereux%20Lab%20-%20Mistargeting%20Assay%20Data_389d6b95-0baf-103c-afc6-fea6ddf51ba4/_temp__2023-07-23_10-52-20/export/xar/experiments_and_runs.xar.exploded/Run164871/ZL-II-64-65_Velos/Velos.skyd into the system
23 Jul 2023 11:04:06,977 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/UC%20Riverside%20Genereux%20Lab%20-%20Mistargeting%20Assay%20Data_389d6b95-0baf-103c-afc6-fea6ddf51ba4/_temp__2023-07-23_10-52-20/export/xar/experiments_and_runs.xar.exploded/Run164871/ZL-II-64-65_Velos/Velos.skyd into the system
23 Jul 2023 11:04:06,977 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/UC%20Riverside%20Genereux%20Lab%20-%20Mistargeting%20Assay%20Data_389d6b95-0baf-103c-afc6-fea6ddf51ba4/_temp__2023-07-23_10-52-20/export/xar/experiments_and_runs.xar.exploded/Run164871/ZL-II-64-65_Velos.sky.zip into the system
23 Jul 2023 11:04:06,978 INFO : Starting import from ZL-II-64-65_Velos.sky.zip
23 Jul 2023 11:04:06,981 INFO : Starting to import Skyline document from ZL-II-64-65_Velos.sky.zip
23 Jul 2023 11:04:06,986 INFO : Expanding myPrositLibAVIDCIDNCE35.msp
23 Jul 2023 11:04:06,986 INFO : Expanding myPrositLib_APEX2-NES_CID_NCE35.msp
23 Jul 2023 11:04:06,988 INFO : Expanding human_consensus_final_true_lib.msp
23 Jul 2023 11:04:17,855 INFO : Expanding chicken_consensus_final_true_lib.msp
23 Jul 2023 11:04:17,938 INFO : Expanding Velos.skyd
23 Jul 2023 11:04:18,061 INFO : Expanding Velos.sky.view
23 Jul 2023 11:04:18,061 INFO : Expanding Velos.sky
23 Jul 2023 11:04:18,072 INFO : Expanding Velos.skyl
23 Jul 2023 11:04:18,099 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13
23 Jul 2023 11:04:18,103 INFO : 1% Done
23 Jul 2023 11:04:18,252 DEBUG: Starting to load chromatogram headers
23 Jul 2023 11:04:18,253 DEBUG: Done loading chromatogram headers
23 Jul 2023 11:04:18,390 INFO : Inserting TTHY
23 Jul 2023 11:04:18,399 INFO : 4% Done
23 Jul 2023 11:04:18,433 DEBUG: Total peptides inserted: 1
23 Jul 2023 11:04:18,433 INFO : Inserting APEX2-NES
23 Jul 2023 11:04:18,449 INFO : 9% Done
23 Jul 2023 11:04:18,515 INFO : 14% Done
23 Jul 2023 11:04:18,584 INFO : 20% Done
23 Jul 2023 11:04:18,669 INFO : 25% Done
23 Jul 2023 11:04:18,730 DEBUG: Total peptides inserted: 4
23 Jul 2023 11:04:18,730 INFO : Inserting ACTB
23 Jul 2023 11:04:18,743 INFO : 29% Done
23 Jul 2023 11:04:18,790 DEBUG: Total peptides inserted: 1
23 Jul 2023 11:04:18,790 INFO : Inserting G3P
23 Jul 2023 11:04:18,801 INFO : 33% Done
23 Jul 2023 11:04:18,850 DEBUG: Total peptides inserted: 1
23 Jul 2023 11:04:18,850 INFO : Inserting sp|P68363|TBA1B_HUMAN
23 Jul 2023 11:04:18,869 INFO : 38% Done
23 Jul 2023 11:04:18,941 INFO : 42% Done
23 Jul 2023 11:04:19,028 INFO : 46% Done
23 Jul 2023 11:04:19,088 INFO : 50% Done
23 Jul 2023 11:04:19,144 DEBUG: Total peptides inserted: 4
23 Jul 2023 11:04:19,144 INFO : Inserting HSP71A
23 Jul 2023 11:04:19,153 INFO : 53% Done
23 Jul 2023 11:04:19,186 DEBUG: Total peptides inserted: 1
23 Jul 2023 11:04:19,186 INFO : Inserting sp|P11021|GRP78_HUMAN
23 Jul 2023 11:04:19,201 INFO : 57% Done
23 Jul 2023 11:04:19,267 INFO : 61% Done
23 Jul 2023 11:04:19,306 DEBUG: Total peptides inserted: 2
23 Jul 2023 11:04:19,306 INFO : Inserting sp|P02701|AVID_CHICK
23 Jul 2023 11:04:19,333 INFO : 67% Done
23 Jul 2023 11:04:19,404 DEBUG: Total peptides inserted: 1
23 Jul 2023 11:04:19,404 INFO : Inserting sp|P11498|PYC_HUMAN
23 Jul 2023 11:04:19,442 INFO : 71% Done
23 Jul 2023 11:04:19,521 INFO : 75% Done
23 Jul 2023 11:04:19,619 INFO : 81% Done
23 Jul 2023 11:04:19,703 INFO : 87% Done
23 Jul 2023 11:04:19,783 INFO : 91% Done
23 Jul 2023 11:04:19,862 INFO : 98% Done
23 Jul 2023 11:04:19,932 DEBUG: Total peptides inserted: 6
23 Jul 2023 11:04:19,934 INFO : Done parsing Skyline document.
23 Jul 2023 11:04:28,632 INFO : Creating and populating temp tables for Proportion values
23 Jul 2023 11:04:28,704 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
23 Jul 2023 11:04:28,722 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
23 Jul 2023 11:04:28,735 INFO : Cleaning up temp tables
23 Jul 2023 11:04:29,039 INFO : Completed import of Skyline document from ZL-II-64-65_Velos.sky.zip
23 Jul 2023 11:04:29,041 INFO : 100% Done
23 Jul 2023 11:04:29,045 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/UC%20Riverside%20Genereux%20Lab%20-%20Mistargeting%20Assay%20Data_389d6b95-0baf-103c-afc6-fea6ddf51ba4/_temp__2023-07-23_10-52-20/export/xar/experiments_and_runs.xar.exploded/Run164871/ZL-II-64-65_Velos.sky.zip into the system
23 Jul 2023 11:04:29,045 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/UC%20Riverside%20Genereux%20Lab%20-%20Mistargeting%20Assay%20Data_389d6b95-0baf-103c-afc6-fea6ddf51ba4/_temp__2023-07-23_10-52-20/export/xar/experiments_and_runs.xar.exploded/Run164872/ZL-II-37_51-55_VelosPro/VelosPro.skyd into the system
23 Jul 2023 11:04:29,045 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/UC%20Riverside%20Genereux%20Lab%20-%20Mistargeting%20Assay%20Data_389d6b95-0baf-103c-afc6-fea6ddf51ba4/_temp__2023-07-23_10-52-20/export/xar/experiments_and_runs.xar.exploded/Run164872/ZL-II-37_51-55_VelosPro/VelosPro.skyd into the system
23 Jul 2023 11:04:29,045 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/UC%20Riverside%20Genereux%20Lab%20-%20Mistargeting%20Assay%20Data_389d6b95-0baf-103c-afc6-fea6ddf51ba4/_temp__2023-07-23_10-52-20/export/xar/experiments_and_runs.xar.exploded/Run164872/ZL-II-37_51-55_VelosPro.sky.zip into the system
23 Jul 2023 11:04:29,046 INFO : Starting import from ZL-II-37_51-55_VelosPro.sky.zip
23 Jul 2023 11:04:29,048 INFO : Starting to import Skyline document from ZL-II-37_51-55_VelosPro.sky.zip
23 Jul 2023 11:04:29,061 INFO : Expanding myPrositLibAVIDCIDNCE35.msp
23 Jul 2023 11:04:29,062 INFO : Expanding myPrositLib_APEX2-NES_CID_NCE35.msp
23 Jul 2023 11:04:29,063 INFO : Expanding human_consensus_final_true_lib.msp
23 Jul 2023 11:04:39,703 INFO : Expanding chicken_consensus_final_true_lib.msp
23 Jul 2023 11:04:39,797 INFO : Expanding VelosPro.skyd
23 Jul 2023 11:04:40,421 INFO : Expanding VelosPro.sky.view
23 Jul 2023 11:04:40,421 INFO : Expanding VelosPro.sky
23 Jul 2023 11:04:40,458 INFO : Expanding VelosPro.skyl
23 Jul 2023 11:04:40,485 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13
23 Jul 2023 11:04:40,490 INFO : 1% Done
23 Jul 2023 11:04:40,947 DEBUG: Starting to load chromatogram headers
23 Jul 2023 11:04:40,952 DEBUG: Done loading chromatogram headers
23 Jul 2023 11:04:41,150 INFO : Inserting TTHY
23 Jul 2023 11:04:41,175 INFO : 5% Done
23 Jul 2023 11:04:41,314 DEBUG: Total peptides inserted: 1
23 Jul 2023 11:04:41,314 INFO : Inserting APEX2-NES
23 Jul 2023 11:04:41,347 INFO : 10% Done
23 Jul 2023 11:04:41,550 INFO : 16% Done
23 Jul 2023 11:04:41,775 INFO : 21% Done
23 Jul 2023 11:04:42,043 INFO : 29% Done
23 Jul 2023 11:04:42,317 DEBUG: Total peptides inserted: 4
23 Jul 2023 11:04:42,317 INFO : Inserting ACTB
23 Jul 2023 11:04:42,341 INFO : 33% Done
23 Jul 2023 11:04:42,472 DEBUG: Total peptides inserted: 1
23 Jul 2023 11:04:42,472 INFO : Inserting G3P
23 Jul 2023 11:04:42,488 INFO : 36% Done
23 Jul 2023 11:04:42,600 DEBUG: Total peptides inserted: 1
23 Jul 2023 11:04:42,600 INFO : Inserting sp|P68363|TBA1B_HUMAN
23 Jul 2023 11:04:42,618 INFO : 39% Done
23 Jul 2023 11:04:42,747 INFO : 42% Done
23 Jul 2023 11:04:42,894 INFO : 45% Done
23 Jul 2023 11:04:43,028 INFO : 49% Done
23 Jul 2023 11:04:43,165 DEBUG: Total peptides inserted: 4
23 Jul 2023 11:04:43,165 INFO : Inserting HSP71A
23 Jul 2023 11:04:43,274 INFO : 57% Done
23 Jul 2023 11:04:43,503 DEBUG: Total peptides inserted: 1
23 Jul 2023 11:04:43,503 INFO : Inserting sp|P11021|GRP78_HUMAN
23 Jul 2023 11:04:43,525 INFO : 60% Done
23 Jul 2023 11:04:43,655 INFO : 63% Done
23 Jul 2023 11:04:43,779 DEBUG: Total peptides inserted: 2
23 Jul 2023 11:04:43,779 INFO : Inserting sp|P02701|AVID_CHICK
23 Jul 2023 11:04:43,915 INFO : 73% Done
23 Jul 2023 11:04:44,291 DEBUG: Total peptides inserted: 1
23 Jul 2023 11:04:44,291 INFO : Inserting sp|P11498|PYC_HUMAN
23 Jul 2023 11:04:44,319 INFO : 76% Done
23 Jul 2023 11:04:44,481 INFO : 79% Done
23 Jul 2023 11:04:44,625 INFO : 83% Done
23 Jul 2023 11:04:44,817 INFO : 89% Done
23 Jul 2023 11:04:45,041 INFO : 94% Done
23 Jul 2023 11:04:45,238 INFO : 98% Done
23 Jul 2023 11:04:45,391 DEBUG: Total peptides inserted: 6
23 Jul 2023 11:04:45,392 INFO : Done parsing Skyline document.
23 Jul 2023 11:04:57,773 INFO : Creating and populating temp tables for Proportion values
23 Jul 2023 11:04:57,898 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
23 Jul 2023 11:04:57,998 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
23 Jul 2023 11:04:58,069 INFO : Cleaning up temp tables
23 Jul 2023 11:04:58,330 INFO : Completed import of Skyline document from ZL-II-37_51-55_VelosPro.sky.zip
23 Jul 2023 11:04:58,332 INFO : 100% Done
23 Jul 2023 11:04:58,336 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/UC%20Riverside%20Genereux%20Lab%20-%20Mistargeting%20Assay%20Data_389d6b95-0baf-103c-afc6-fea6ddf51ba4/_temp__2023-07-23_10-52-20/export/xar/experiments_and_runs.xar.exploded/Run164872/ZL-II-37_51-55_VelosPro.sky.zip into the system
23 Jul 2023 11:04:58,346 INFO : Done importing xar
23 Jul 2023 11:04:58,348 INFO : Loading pages and webpart properties
23 Jul 2023 11:04:58,409 INFO : Done importing 3 page(s) with 6 webpart(s)
23 Jul 2023 11:04:58,409 INFO : Loading File Browser config
23 Jul 2023 11:04:58,409 INFO : Done importing File Browser config
23 Jul 2023 11:04:58,410 INFO : Starting Sample Status Data import
23 Jul 2023 11:04:58,411 INFO : No sample types XAR file to process.
23 Jul 2023 11:04:58,411 INFO : Finished importing Sample Status Data
23 Jul 2023 11:04:58,415 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
23 Jul 2023 11:04:58,417 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
23 Jul 2023 11:04:58,417 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
23 Jul 2023 11:04:58,417 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
23 Jul 2023 11:04:58,418 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
23 Jul 2023 11:04:58,418 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
23 Jul 2023 11:04:58,418 INFO : Importing files metadata.
23 Jul 2023 11:04:58,418 DEBUG: [/Panorama Public/2023/UC Riverside Genereux Lab - Mistargeting Assay Data] Reading files metadata from /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/UC Riverside Genereux Lab - Mistargeting Assay Data_389d6b95-0baf-103c-afc6-fea6ddf51ba4/_temp__2023-07-23_10-52-20/export
23 Jul 2023 11:04:58,419 INFO :
23 Jul 2023 11:04:58,419 INFO : Experiment import completed successfully.
23 Jul 2023 11:04:58,419 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
23 Jul 2023 11:06:44,712 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
23 Jul 2023 11:06:44,712 INFO :
23 Jul 2023 11:06:44,712 INFO : Checking for library folders.
23 Jul 2023 11:06:44,714 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
23 Jul 2023 11:06:44,729 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
23 Jul 2023 11:06:44,729 INFO :
23 Jul 2023 11:06:44,729 INFO : Finishing up experiment copy.
23 Jul 2023 11:06:44,731 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
23 Jul 2023 11:06:44,731 INFO : Setting version on new experiment to 1
23 Jul 2023 11:06:44,731 INFO : Assigning a ProteomeXchange ID.
23 Jul 2023 11:06:45,765 INFO : Assigning a DOI.
23 Jul 2023 11:06:47,352 INFO : Assigned DOI: 10.6069/ckq1-da18
23 Jul 2023 11:06:47,356 INFO : Updating permanent link to point to the new copy of the data.
23 Jul 2023 11:06:47,360 INFO : Removing copy permissions given to Panorama Public
23 Jul 2023 11:06:47,371 INFO : Adding read permissions to all users that are folder admins in the source folder.
23 Jul 2023 11:06:47,372 INFO : Assigning PanoramaPublicSubmitterRole to josephg@ucr.edu
23 Jul 2023 11:06:47,372 INFO : Assigning PanoramaPublicSubmitterRole to josephg@ucr.edu
23 Jul 2023 11:06:47,372 INFO : Assigning PanoramaPublicSubmitterRole to josephg@ucr.edu
23 Jul 2023 11:06:47,374 INFO : Adding user josephg@ucr.edu to group Panorama Public Submitters
23 Jul 2023 11:06:47,378 INFO : User josephg@ucr.edu is already a member of group Panorama Public Submitters
23 Jul 2023 11:06:47,378 INFO : User josephg@ucr.edu is already a member of group Panorama Public Submitters
23 Jul 2023 11:06:47,386 INFO : Updating the 'Raw Data' tab configuration
23 Jul 2023 11:06:47,389 INFO : Updating dataFileUrls for run ZL-II-64-65_Velos.sky.zip; targetedms run ID 167737
23 Jul 2023 11:06:47,389 INFO : Updating dataFileUrl...
23 Jul 2023 11:06:47,389 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/UC%20Riverside%20Genereux%20Lab%20-%20Mistargeting%20Assay%20Data_389d6b95-0baf-103c-afc6-fea6ddf51ba4/_temp__2023-07-23_10-52-20/export/xar/experiments_and_runs.xar.exploded/Run164871/ZL-II-64-65_Velos/Velos.skyd
23 Jul 2023 11:06:47,389 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/UC%20Riverside%20Genereux%20Lab%20-%20Mistargeting%20Assay%20Data/@files/ZL-II-64-65_Velos/Velos.skyd
23 Jul 2023 11:06:47,391 INFO : Updating dataFileUrl...
23 Jul 2023 11:06:47,391 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/UC%20Riverside%20Genereux%20Lab%20-%20Mistargeting%20Assay%20Data_389d6b95-0baf-103c-afc6-fea6ddf51ba4/_temp__2023-07-23_10-52-20/export/xar/experiments_and_runs.xar.exploded/Run164871/ZL-II-64-65_Velos.sky.zip
23 Jul 2023 11:06:47,391 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/UC%20Riverside%20Genereux%20Lab%20-%20Mistargeting%20Assay%20Data/@files/ZL-II-64-65_Velos.sky.zip
23 Jul 2023 11:06:47,394 INFO : Updating dataFileUrls for run ZL-II-37_51-55_VelosPro.sky.zip; targetedms run ID 167738
23 Jul 2023 11:06:47,395 INFO : Updating dataFileUrl...
23 Jul 2023 11:06:47,395 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/UC%20Riverside%20Genereux%20Lab%20-%20Mistargeting%20Assay%20Data_389d6b95-0baf-103c-afc6-fea6ddf51ba4/_temp__2023-07-23_10-52-20/export/xar/experiments_and_runs.xar.exploded/Run164872/ZL-II-37_51-55_VelosPro/VelosPro.skyd
23 Jul 2023 11:06:47,395 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/UC%20Riverside%20Genereux%20Lab%20-%20Mistargeting%20Assay%20Data/@files/ZL-II-37_51-55_VelosPro/VelosPro.skyd
23 Jul 2023 11:06:47,397 INFO : Updating dataFileUrl...
23 Jul 2023 11:06:47,397 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/UC%20Riverside%20Genereux%20Lab%20-%20Mistargeting%20Assay%20Data_389d6b95-0baf-103c-afc6-fea6ddf51ba4/_temp__2023-07-23_10-52-20/export/xar/experiments_and_runs.xar.exploded/Run164872/ZL-II-37_51-55_VelosPro.sky.zip
23 Jul 2023 11:06:47,397 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/UC%20Riverside%20Genereux%20Lab%20-%20Mistargeting%20Assay%20Data/@files/ZL-II-37_51-55_VelosPro.sky.zip
23 Jul 2023 11:06:47,403 INFO : Making folder public.
23 Jul 2023 11:06:47,411 INFO : Hiding the Data Pipeline tab.
23 Jul 2023 11:06:47,415 INFO : Updating Submission. Setting copiedExperimentId to 1657
23 Jul 2023 11:06:47,464 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'