Copying experiment: Antimicrobial peptides of the apidaecin family inhibit the bacterial ribosome by multimodal mechanisms involving three different sites on the large ribosomal subunit

U of Leipzig AG Bioanalytics - Ribosome

Job Status

Created: 2023-08-27 16:12:31
Modified: 2023-08-27 16:40:01
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Copying experiment: Antimicrobial peptides of the apidaecin family inhibit the bacterial ribosome by multimodal mechanisms involving three different sites on the large ribosomal subunit
File Path: /data/labkey/files/Panorama Public/2023/U of Leipzig AG Bioanalytics - Ribosome/@files/Experiment_1753.log
Files: Experiment_1753.log
Completed Runs: S4_22_33_+S4_23_6_230317_only_CandidatesForEnrichedPro_2023-08-22_04-53-52.sky.zip
S4_22_33_+S4_23_6_230214_onlyotherproteins_2023-08-23_02-07-21.sky.zip
S4_22_33_+S4_23_6_230317_onlyRiboProt_2023-08-23_02-21-50.sky.zip

Log File


27 Aug 2023 16:12:31,812 INFO : Copying experiment "Antimicrobial peptides of the apidaecin family inhibit the bacterial ribosome by multimodal mechanisms involving three different sites on the large ribosomal subunit" from folder /U of Leipzig - AG Bioanalytics/Ribosome to /Panorama Public/2023/U of Leipzig AG Bioanalytics - Ribosome
27 Aug 2023 16:12:31,812 INFO : =======================================
27 Aug 2023 16:12:31,847 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
27 Aug 2023 16:12:31,847 INFO :
27 Aug 2023 16:12:31,847 INFO : Exporting experiment.
27 Aug 2023 16:25:01,819 INFO : Exporting files metadata.
27 Aug 2023 16:25:01,830 INFO :
27 Aug 2023 16:25:01,830 INFO : Experiment export completed successfully.
27 Aug 2023 16:25:01,830 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
27 Aug 2023 16:25:01,857 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
27 Aug 2023 16:25:01,857 INFO :
27 Aug 2023 16:25:01,857 INFO : Importing experiment.
27 Aug 2023 16:25:01,860 INFO : Loading folder properties (folder type, settings and active modules)
27 Aug 2023 16:25:01,928 INFO : Done importing folder properties (folder type, settings and active modules)
27 Aug 2023 16:25:01,929 INFO : Loading container specific module properties
27 Aug 2023 16:25:01,933 INFO : Done importing container specific module properties
27 Aug 2023 16:25:01,935 INFO : Loading grid views
27 Aug 2023 16:25:01,938 INFO : 1 custom view imported
27 Aug 2023 16:25:01,938 INFO : Done importing grid views
27 Aug 2023 16:25:01,939 INFO : Loading etl definitions
27 Aug 2023 16:25:01,940 INFO : Loading wikis
27 Aug 2023 16:25:01,961 INFO : 1 wiki imported
27 Aug 2023 16:25:01,961 INFO : Done importing wikis
27 Aug 2023 16:25:01,964 INFO : Starting Data Class Importer
27 Aug 2023 16:25:01,964 INFO : No types XAR file to process.
27 Aug 2023 16:25:01,964 INFO : Finished Data Class Importer
27 Aug 2023 16:25:01,965 INFO : Starting to copy files
27 Aug 2023 16:25:01,965 INFO : Copied 0 files
27 Aug 2023 16:25:01,965 INFO : Ensuring exp.data rows exist for imported files
27 Aug 2023 16:25:02,048 INFO : Starting Sample Type Importer
27 Aug 2023 16:25:02,048 INFO : No types XAR file to process.
27 Aug 2023 16:25:02,048 INFO : Finished Sample Type Importer
27 Aug 2023 16:25:02,049 INFO : Loading xar
27 Aug 2023 16:28:29,372 INFO : Starting import from S4_22_33_+S4_23_6_230317_only_CandidatesForEnrichedPro_2023-08-22_04-53-52.sky.zip
27 Aug 2023 16:28:29,375 INFO : Starting to import Skyline document from S4_22_33_+S4_23_6_230317_only_CandidatesForEnrichedPro_2023-08-22_04-53-52.sky.zip
27 Aug 2023 16:28:29,474 INFO : Expanding 221213_uniprot_EcoliPlus_4392seq_280520+Api88+RNase1+mAzami+mCherry+streptavidin+trypsin+DnaK S.aur.protdb
27 Aug 2023 16:28:29,913 INFO : Expanding 230214_S4_23_6.blib
27 Aug 2023 16:28:30,017 INFO : Expanding 230214_S4_23_6.redundant.blib
27 Aug 2023 16:28:32,115 INFO : Expanding S4_22_33_+S4_23_6_230317_only_CandidatesForEnrichedPro.skyd
27 Aug 2023 16:29:03,362 INFO : Expanding S4_22_33_+S4_23_6_230317_only_CandidatesForEnrichedPro.sky.view
27 Aug 2023 16:29:03,441 INFO : Expanding S4_22_33_+S4_23_6_230317_only_CandidatesForEnrichedPro.sky
27 Aug 2023 16:29:03,779 INFO : Expanding S4_22_33_+S4_23_6_230317_only_CandidatesForEnrichedPro.skyl
27 Aug 2023 16:29:04,237 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13
27 Aug 2023 16:29:04,243 INFO : 12% Done
27 Aug 2023 16:29:13,455 INFO : Inserting sp|P02358|RS6_ECOLI
27 Aug 2023 16:29:13,473 INFO : 17% Done
27 Aug 2023 16:29:13,560 INFO : 19% Done
27 Aug 2023 16:29:13,628 INFO : Inserting sp|P0A7J3|RL10_ECOLI
27 Aug 2023 16:29:13,650 INFO : 21% Done
27 Aug 2023 16:29:13,766 INFO : 23% Done
27 Aug 2023 16:29:13,857 INFO : 26% Done
27 Aug 2023 16:29:13,948 INFO : 28% Done
27 Aug 2023 16:29:14,044 INFO : 30% Done
27 Aug 2023 16:29:14,122 INFO : 32% Done
27 Aug 2023 16:29:14,193 INFO : 33% Done
27 Aug 2023 16:29:14,193 INFO : Inserting sp|P0A7M6|RL29_ECOLI
27 Aug 2023 16:29:14,211 INFO : 34% Done
27 Aug 2023 16:29:14,278 INFO : Inserting sp|P0A7R5|RS10_ECOLI
27 Aug 2023 16:29:14,292 INFO : 36% Done
27 Aug 2023 16:29:14,361 INFO : 38% Done
27 Aug 2023 16:29:14,434 INFO : 39% Done
27 Aug 2023 16:29:14,508 INFO : 41% Done
27 Aug 2023 16:29:14,603 INFO : 44% Done
27 Aug 2023 16:29:14,683 INFO : Inserting sp|P0A7V0|RS2_ECOLI
27 Aug 2023 16:29:14,701 INFO : 46% Done
27 Aug 2023 16:29:14,802 INFO : 51% Done
27 Aug 2023 16:29:14,903 INFO : 55% Done
27 Aug 2023 16:29:14,996 INFO : 57% Done
27 Aug 2023 16:29:15,086 INFO : 60% Done
27 Aug 2023 16:29:15,155 INFO : 61% Done
27 Aug 2023 16:29:15,216 INFO : 65% Done
27 Aug 2023 16:29:15,300 INFO : 66% Done
27 Aug 2023 16:29:15,386 INFO : 68% Done
27 Aug 2023 16:29:15,482 INFO : 72% Done
27 Aug 2023 16:29:15,682 INFO : 74% Done
27 Aug 2023 16:29:15,839 INFO : 76% Done
27 Aug 2023 16:29:15,920 INFO : 78% Done
27 Aug 2023 16:29:16,021 INFO : 80% Done
27 Aug 2023 16:29:16,131 INFO : 82% Done
27 Aug 2023 16:29:16,203 INFO : 85% Done
27 Aug 2023 16:29:16,269 INFO : Inserting sp|P0ADZ0|RL23_ECOLI
27 Aug 2023 16:29:16,293 INFO : 86% Done
27 Aug 2023 16:29:16,408 INFO : 89% Done
27 Aug 2023 16:29:16,479 INFO : Inserting sp|P60723|RL4_ECOLI
27 Aug 2023 16:29:16,497 INFO : 91% Done
27 Aug 2023 16:29:16,585 INFO : 92% Done
27 Aug 2023 16:29:16,710 INFO : 94% Done
27 Aug 2023 16:29:16,789 INFO : 96% Done
27 Aug 2023 16:29:16,869 INFO : 98% Done
27 Aug 2023 16:29:16,938 INFO : Done parsing Skyline document.
27 Aug 2023 16:32:55,619 INFO : Creating and populating temp tables for Proportion values
27 Aug 2023 16:32:55,711 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
27 Aug 2023 16:32:55,838 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
27 Aug 2023 16:32:55,924 INFO : Cleaning up temp tables
27 Aug 2023 16:32:56,193 INFO : Completed import of Skyline document from S4_22_33_+S4_23_6_230317_only_CandidatesForEnrichedPro_2023-08-22_04-53-52.sky.zip
27 Aug 2023 16:32:56,194 INFO : 100% Done
27 Aug 2023 16:32:56,201 INFO : Starting import from S4_22_33_+S4_23_6_230214_onlyotherproteins_2023-08-23_02-07-21.sky.zip
27 Aug 2023 16:32:56,203 INFO : Starting to import Skyline document from S4_22_33_+S4_23_6_230214_onlyotherproteins_2023-08-23_02-07-21.sky.zip
27 Aug 2023 16:32:56,572 INFO : Expanding 221213_uniprot_EcoliPlus_4392seq_280520+Api88+RNase1+mAzami+mCherry+streptavidin+trypsin+DnaK S.aur.protdb
27 Aug 2023 16:32:57,088 INFO : Expanding 230213_S4_22_33.blib
27 Aug 2023 16:32:57,207 INFO : Expanding 230213_S4_22_33.redundant.blib
27 Aug 2023 16:32:58,149 INFO : Expanding 230214_S4_23_6.blib
27 Aug 2023 16:32:58,729 INFO : Expanding 230214_S4_23_6.redundant.blib
27 Aug 2023 16:33:00,213 INFO : Expanding S4_22_33_+S4_23_6_230214_onlyotherproteins.skyd
27 Aug 2023 16:33:39,393 INFO : Expanding S4_22_33_+S4_23_6_230214_onlyotherproteins.sky.view
27 Aug 2023 16:33:39,394 INFO : Expanding S4_22_33_+S4_23_6_230214_onlyotherproteins.sky
27 Aug 2023 16:33:39,531 INFO : Expanding S4_22_33_+S4_23_6_230214_onlyotherproteins.skyl
27 Aug 2023 16:33:39,686 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13
27 Aug 2023 16:33:39,694 INFO : 3% Done
27 Aug 2023 16:33:50,658 INFO : Inserting sp|P00490|PHSM_ECOLI
27 Aug 2023 16:33:50,750 INFO : Inserting sp|P00864|CAPP_ECOLI
27 Aug 2023 16:33:50,837 INFO : Inserting sp|P00957|SYA_ECOLI
27 Aug 2023 16:33:50,855 INFO : 5% Done
27 Aug 2023 16:33:51,008 INFO : Inserting sp|P05055|PNP_ECOLI
27 Aug 2023 16:33:51,152 INFO : 6% Done
27 Aug 2023 16:33:51,405 INFO : 7% Done
27 Aug 2023 16:33:51,575 INFO : Inserting sp|P06959|ODP2_ECOLI
27 Aug 2023 16:33:51,644 INFO : 8% Done
27 Aug 2023 16:33:51,956 INFO : 9% Done
27 Aug 2023 16:33:52,209 INFO : 10% Done
27 Aug 2023 16:33:52,453 INFO : 11% Done
27 Aug 2023 16:33:52,706 INFO : 12% Done
27 Aug 2023 16:33:53,001 INFO : 13% Done
27 Aug 2023 16:33:53,036 INFO : Inserting sp|P07395|SYFB_ECOLI
27 Aug 2023 16:33:53,128 INFO : Inserting sp|P09373|PFLB_ECOLI
27 Aug 2023 16:33:53,228 INFO : 14% Done
27 Aug 2023 16:33:53,481 INFO : 15% Done
27 Aug 2023 16:33:53,632 INFO : Inserting sp|P0A6F5|CH60_ECOLI
27 Aug 2023 16:33:53,719 INFO : Inserting sp|P0A832|SSRP_ECOLI
27 Aug 2023 16:33:53,738 INFO : 16% Done
27 Aug 2023 16:33:53,887 INFO : Inserting sp|P0A836|SUCC_ECOLI
27 Aug 2023 16:33:53,971 INFO : Inserting sp|P0A853|TNAA_ECOLI
27 Aug 2023 16:33:53,991 INFO : 17% Done
27 Aug 2023 16:33:54,256 INFO : 18% Done
27 Aug 2023 16:33:54,489 INFO : 19% Done
27 Aug 2023 16:33:54,738 INFO : 20% Done
27 Aug 2023 16:33:54,981 INFO : 21% Done
27 Aug 2023 16:33:55,230 INFO : 22% Done
27 Aug 2023 16:33:55,558 INFO : 23% Done
27 Aug 2023 16:33:55,810 INFO : 24% Done
27 Aug 2023 16:33:56,105 INFO : 25% Done
27 Aug 2023 16:33:56,325 INFO : Inserting sp|P0A8N5|SYK2_ECOLI
27 Aug 2023 16:33:56,500 INFO : Inserting sp|P0A9G6|ACEA_ECOLI
27 Aug 2023 16:33:56,591 INFO : Inserting sp|P0A9P0|DLDH_ECOLI
27 Aug 2023 16:33:56,642 INFO : 26% Done
27 Aug 2023 16:33:56,903 INFO : 27% Done
27 Aug 2023 16:33:57,148 INFO : Inserting sp|P0AA25|THIO_ECOLI
27 Aug 2023 16:33:57,179 INFO : 28% Done
27 Aug 2023 16:33:57,410 INFO : 29% Done
27 Aug 2023 16:33:57,690 INFO : 30% Done
27 Aug 2023 16:33:57,841 INFO : Inserting sp|P0ABH7|CISY_ECOLI
27 Aug 2023 16:33:57,946 INFO : 31% Done
27 Aug 2023 16:33:58,100 INFO : Inserting sp|P0AC33|FUMA_ECOLI
27 Aug 2023 16:33:58,187 INFO : Inserting sp|P0AFG8|ODP1_ECOLI
27 Aug 2023 16:33:58,199 INFO : 32% Done
27 Aug 2023 16:33:58,416 INFO : 33% Done
27 Aug 2023 16:33:58,683 INFO : 34% Done
27 Aug 2023 16:33:58,922 INFO : 35% Done
27 Aug 2023 16:33:59,201 INFO : 36% Done
27 Aug 2023 16:33:59,315 INFO : Inserting sp|P0AG67|RS1_ECOLI
27 Aug 2023 16:33:59,410 INFO : 37% Done
27 Aug 2023 16:33:59,760 INFO : 38% Done
27 Aug 2023 16:34:00,038 INFO : 39% Done
27 Aug 2023 16:34:00,251 INFO : 40% Done
27 Aug 2023 16:34:00,499 INFO : 41% Done
27 Aug 2023 16:34:00,763 INFO : 42% Done
27 Aug 2023 16:34:01,013 INFO : 43% Done
27 Aug 2023 16:34:01,308 INFO : 44% Done
27 Aug 2023 16:34:01,381 INFO : Inserting sp|P0C8J6|GATY_ECOLI
27 Aug 2023 16:34:01,472 INFO : Inserting sp|P0C8J8|GATZ_ECOLI
27 Aug 2023 16:34:01,574 INFO : 45% Done
27 Aug 2023 16:34:01,842 INFO : Inserting sp|P21338|RNI_ECOLI
27 Aug 2023 16:34:01,853 INFO : 46% Done
27 Aug 2023 16:34:02,049 INFO : Inserting sp|P21499|RNR_ECOLI
27 Aug 2023 16:34:02,067 INFO : 47% Done
27 Aug 2023 16:34:02,223 INFO : Inserting sp|P00561|AK1H_ECOLI
27 Aug 2023 16:34:02,273 INFO : Inserting sp|P00960|SYGA_ECOLI
27 Aug 2023 16:34:02,368 INFO : Inserting sp|P00961|SYGB_ECOLI
27 Aug 2023 16:34:02,381 INFO : 48% Done
27 Aug 2023 16:34:02,594 INFO : Inserting sp|P00968|CARB_ECOLI
27 Aug 2023 16:34:02,642 INFO : Inserting sp|P09546|PUTA_ECOLI
27 Aug 2023 16:34:02,654 INFO : 49% Done
27 Aug 2023 16:34:02,818 INFO : Inserting sp|P0A6F3|GLPK_ECOLI
27 Aug 2023 16:34:02,959 INFO : 50% Done
27 Aug 2023 16:34:03,091 INFO : Inserting sp|P0A7D4|PURA_ECOLI
27 Aug 2023 16:34:03,219 INFO : Inserting sp|P0A7E5|PYRG_ECOLI
27 Aug 2023 16:34:03,230 INFO : 51% Done
27 Aug 2023 16:34:03,264 INFO : Inserting sp|P0A7G6|RECA_ECOLI
27 Aug 2023 16:34:03,310 INFO : Inserting sp|P0A8J8|RHLB_ECOLI
27 Aug 2023 16:34:03,355 INFO : Inserting sp|P0A8M0|SYN_ECOLI
27 Aug 2023 16:34:03,399 INFO : Inserting sp|P0A8M3|SYT_ECOLI
27 Aug 2023 16:34:03,443 INFO : Inserting sp|P0A8T7|RPOC_ECOLI
27 Aug 2023 16:34:03,496 INFO : 52% Done
27 Aug 2023 16:34:03,661 INFO : Inserting sp|P0A8V2|RPOB_ECOLI
27 Aug 2023 16:34:03,706 INFO : Inserting sp|P0A9M0|LON_ECOLI
27 Aug 2023 16:34:03,752 INFO : Inserting sp|P0A9M8|PTA_ECOLI
27 Aug 2023 16:34:03,763 INFO : 53% Done
27 Aug 2023 16:34:03,799 INFO : Inserting sp|P0A9W3|ETTA_ECOLI
27 Aug 2023 16:34:03,971 INFO : Inserting sp|P0A9X4|MREB_ECOLI
27 Aug 2023 16:34:04,024 INFO : 54% Done
27 Aug 2023 16:34:04,060 INFO : Inserting sp|P0ABB0|ATPA_ECOLI
27 Aug 2023 16:34:04,105 INFO : Inserting sp|P0ABB4|ATPB_ECOLI
27 Aug 2023 16:34:04,151 INFO : Inserting sp|P0ABH9|CLPA_ECOLI
27 Aug 2023 16:34:04,240 INFO : Inserting sp|P0ACY3|YEAG_ECOLI
27 Aug 2023 16:34:04,285 INFO : Inserting sp|P0AG30|RHO_ECOLI
27 Aug 2023 16:34:04,295 INFO : 55% Done
27 Aug 2023 16:34:04,582 INFO : 56% Done
27 Aug 2023 16:34:04,742 INFO : Inserting sp|P0AG34|RHTB_ECOLI
27 Aug 2023 16:34:04,786 INFO : Inserting sp|P16659|SYP_ECOLI
27 Aug 2023 16:34:04,833 INFO : Inserting sp|P21513|RNE_ECOLI
27 Aug 2023 16:34:04,845 INFO : 57% Done
27 Aug 2023 16:34:04,882 INFO : Inserting sp|P22523|MUKB_ECOLI
27 Aug 2023 16:34:05,057 INFO : Inserting sp|P23538|PPSA_ECOLI
27 Aug 2023 16:34:05,104 INFO : Inserting sp|P23830|PSS_ECOLI
27 Aug 2023 16:34:05,116 INFO : 58% Done
27 Aug 2023 16:34:05,197 INFO : Inserting sp|P23893|GSA_ECOLI
27 Aug 2023 16:34:05,241 INFO : Inserting sp|P31677|OTSA_ECOLI
27 Aug 2023 16:34:05,329 INFO : Inserting sp|P39199|PRMB_ECOLI
27 Aug 2023 16:34:05,382 INFO : 59% Done
27 Aug 2023 16:34:05,418 INFO : Inserting sp|P60240|RAPA_ECOLI
27 Aug 2023 16:34:05,504 INFO : Inserting sp|P63284|CLPB_ECOLI
27 Aug 2023 16:34:05,642 INFO : 60% Done
27 Aug 2023 16:34:05,721 INFO : Inserting sp|P67910|HLDD_ECOLI
27 Aug 2023 16:34:05,890 INFO : Inserting sp|P69831|PTKC_ECOLI
27 Aug 2023 16:34:05,941 INFO : 61% Done
27 Aug 2023 16:34:05,977 INFO : Inserting sp|Q46800|XDHB_ECOLI
27 Aug 2023 16:34:06,023 INFO : Inserting sp|P22629|SAV_STRAV
27 Aug 2023 16:34:06,206 INFO : 62% Done
27 Aug 2023 16:34:06,492 INFO : 63% Done
27 Aug 2023 16:34:06,705 INFO : 64% Done
27 Aug 2023 16:34:06,932 INFO : 65% Done
27 Aug 2023 16:34:07,205 INFO : 66% Done
27 Aug 2023 16:34:07,555 INFO : 67% Done
27 Aug 2023 16:34:07,731 INFO : 68% Done
27 Aug 2023 16:34:08,112 INFO : 69% Done
27 Aug 2023 16:34:08,275 INFO : 70% Done
27 Aug 2023 16:34:08,591 INFO : 71% Done
27 Aug 2023 16:34:08,845 INFO : 72% Done
27 Aug 2023 16:34:09,178 INFO : 73% Done
27 Aug 2023 16:34:09,384 INFO : 74% Done
27 Aug 2023 16:34:09,885 INFO : 75% Done
27 Aug 2023 16:34:10,206 INFO : 76% Done
27 Aug 2023 16:34:10,496 INFO : 77% Done
27 Aug 2023 16:34:10,755 INFO : 78% Done
27 Aug 2023 16:34:11,018 INFO : 79% Done
27 Aug 2023 16:34:11,287 INFO : 80% Done
27 Aug 2023 16:34:11,487 INFO : 81% Done
27 Aug 2023 16:34:11,716 INFO : 82% Done
27 Aug 2023 16:34:12,074 INFO : 83% Done
27 Aug 2023 16:34:12,298 INFO : 84% Done
27 Aug 2023 16:34:12,569 INFO : 85% Done
27 Aug 2023 16:34:12,793 INFO : 86% Done
27 Aug 2023 16:34:13,049 INFO : 87% Done
27 Aug 2023 16:34:13,280 INFO : 88% Done
27 Aug 2023 16:34:13,530 INFO : 89% Done
27 Aug 2023 16:34:13,770 INFO : 90% Done
27 Aug 2023 16:34:14,016 INFO : 91% Done
27 Aug 2023 16:34:14,321 INFO : 92% Done
27 Aug 2023 16:34:14,544 INFO : 93% Done
27 Aug 2023 16:34:14,724 INFO : 94% Done
27 Aug 2023 16:34:14,997 INFO : 95% Done
27 Aug 2023 16:34:15,152 INFO : Inserting sp|P25553|ALDA_ECOLI
27 Aug 2023 16:34:15,257 INFO : 96% Done
27 Aug 2023 16:34:15,327 INFO : Inserting sp|P33195|GCSP_ECOLI
27 Aug 2023 16:34:15,420 INFO : Inserting sp|P68688|GLRX1_ECOLI
27 Aug 2023 16:34:15,524 INFO : 97% Done
27 Aug 2023 16:34:15,682 INFO : Inserting sp|P75838|YCAO_ECOLI
27 Aug 2023 16:34:15,777 INFO : 98% Done
27 Aug 2023 16:34:15,938 INFO : Done parsing Skyline document.
27 Aug 2023 16:34:15,961 INFO : Creating and populating temp tables for Proportion values
27 Aug 2023 16:34:16,224 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
27 Aug 2023 16:34:17,179 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
27 Aug 2023 16:34:17,800 INFO : Cleaning up temp tables
27 Aug 2023 16:34:18,070 INFO : Completed import of Skyline document from S4_22_33_+S4_23_6_230214_onlyotherproteins_2023-08-23_02-07-21.sky.zip
27 Aug 2023 16:34:18,074 INFO : 100% Done
27 Aug 2023 16:34:18,083 INFO : Starting import from S4_22_33_+S4_23_6_230317_onlyRiboProt_2023-08-23_02-21-50.sky.zip
27 Aug 2023 16:34:18,086 INFO : Starting to import Skyline document from S4_22_33_+S4_23_6_230317_onlyRiboProt_2023-08-23_02-21-50.sky.zip
27 Aug 2023 16:34:18,172 INFO : Expanding 221213_uniprot_EcoliPlus_4392seq_280520+Api88+RNase1+mAzami+mCherry+streptavidin+trypsin+DnaK S.aur.protdb
27 Aug 2023 16:34:18,646 INFO : Expanding 230213_S4_22_33.blib
27 Aug 2023 16:34:18,754 INFO : Expanding 230213_S4_22_33.redundant.blib
27 Aug 2023 16:34:19,695 INFO : Expanding 230214_S4_23_6.blib
27 Aug 2023 16:34:20,351 INFO : Expanding 230214_S4_23_6.redundant.blib
27 Aug 2023 16:34:21,710 INFO : Expanding S4_22_33_+S4_23_6_230317_onlyRiboProt.skyd
27 Aug 2023 16:34:54,636 INFO : Expanding S4_22_33_+S4_23_6_230317_onlyRiboProt.sky.view
27 Aug 2023 16:34:54,722 INFO : Expanding S4_22_33_+S4_23_6_230317_onlyRiboProt.sky
27 Aug 2023 16:34:54,847 INFO : Expanding S4_22_33_+S4_23_6_230317_onlyRiboProt.skyl
27 Aug 2023 16:34:55,099 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13
27 Aug 2023 16:34:55,107 INFO : 6% Done
27 Aug 2023 16:35:04,709 INFO : Inserting sp|P02358|RS6_ECOLI
27 Aug 2023 16:35:04,880 INFO : Inserting sp|P02359|RS7_ECOLI
27 Aug 2023 16:35:04,897 INFO : 8% Done
27 Aug 2023 16:35:05,174 INFO : 9% Done
27 Aug 2023 16:35:05,325 INFO : 10% Done
27 Aug 2023 16:35:05,683 INFO : 11% Done
27 Aug 2023 16:35:05,922 INFO : 12% Done
27 Aug 2023 16:35:06,063 INFO : 13% Done
27 Aug 2023 16:35:06,249 INFO : 14% Done
27 Aug 2023 16:35:06,648 INFO : 15% Done
27 Aug 2023 16:35:06,918 INFO : 16% Done
27 Aug 2023 16:35:06,994 INFO : Inserting sp|P02413|RL15_ECOLI
27 Aug 2023 16:35:07,269 INFO : 17% Done
27 Aug 2023 16:35:07,531 INFO : 18% Done
27 Aug 2023 16:35:07,791 INFO : 19% Done
27 Aug 2023 16:35:07,864 INFO : Inserting sp|P0A7J3|RL10_ECOLI
27 Aug 2023 16:35:08,046 INFO : 20% Done
27 Aug 2023 16:35:08,287 INFO : 21% Done
27 Aug 2023 16:35:08,358 INFO : Inserting sp|P0A7J7|RL11_ECOLI
27 Aug 2023 16:35:08,616 INFO : 22% Done
27 Aug 2023 16:35:08,685 INFO : Inserting sp|P0A7K2|RL7_ECOLI
27 Aug 2023 16:35:08,856 INFO : Inserting sp|P0A7K6|RL19_ECOLI
27 Aug 2023 16:35:08,958 INFO : 23% Done
27 Aug 2023 16:35:09,307 INFO : 24% Done
27 Aug 2023 16:35:09,441 INFO : Inserting sp|P0A7L0|RL1_ECOLI
27 Aug 2023 16:35:09,646 INFO : 25% Done
27 Aug 2023 16:35:09,981 INFO : Inserting sp|P0A7L3|RL20_ECOLI
27 Aug 2023 16:35:10,251 INFO : 26% Done
27 Aug 2023 16:35:10,402 INFO : Inserting sp|P0A7M2|RL28_ECOLI
27 Aug 2023 16:35:10,491 INFO : Inserting sp|P0A7M6|RL29_ECOLI
27 Aug 2023 16:35:10,581 INFO : Inserting sp|P0A7R1|RL9_ECOLI
27 Aug 2023 16:35:10,599 INFO : 27% Done
27 Aug 2023 16:35:10,943 INFO : 28% Done
27 Aug 2023 16:35:11,191 INFO : Inserting sp|P0A7R5|RS10_ECOLI
27 Aug 2023 16:35:11,298 INFO : 29% Done
27 Aug 2023 16:35:11,612 INFO : Inserting sp|P0A7R9|RS11_ECOLI
27 Aug 2023 16:35:11,709 INFO : 30% Done
27 Aug 2023 16:35:11,870 INFO : Inserting sp|P0A7S3|RS12_ECOLI
27 Aug 2023 16:35:11,976 INFO : 31% Done
27 Aug 2023 16:35:12,047 INFO : Inserting sp|P0A7S9|RS13_ECOLI
27 Aug 2023 16:35:12,382 INFO : 32% Done
27 Aug 2023 16:35:12,532 INFO : Inserting sp|P0A7T3|RS16_ECOLI
27 Aug 2023 16:35:12,618 INFO : Inserting sp|P0A7T7|RS18_ECOLI
27 Aug 2023 16:35:12,717 INFO : 33% Done
27 Aug 2023 16:35:13,019 INFO : Inserting sp|P0A7U3|RS19_ECOLI
27 Aug 2023 16:35:13,114 INFO : 34% Done
27 Aug 2023 16:35:13,183 INFO : Inserting sp|P0A7U7|RS20_ECOLI
27 Aug 2023 16:35:13,271 INFO : Inserting sp|P0A7V0|RS2_ECOLI
27 Aug 2023 16:35:13,380 INFO : 35% Done
27 Aug 2023 16:35:13,562 INFO : 36% Done
27 Aug 2023 16:35:13,817 INFO : 37% Done
27 Aug 2023 16:35:14,255 INFO : 38% Done
27 Aug 2023 16:35:14,587 INFO : 39% Done
27 Aug 2023 16:35:14,824 INFO : Inserting sp|P0A7V3|RS3_ECOLI
27 Aug 2023 16:35:14,934 INFO : 40% Done
27 Aug 2023 16:35:15,242 INFO : 41% Done
27 Aug 2023 16:35:15,588 INFO : 42% Done
27 Aug 2023 16:35:15,842 INFO : 43% Done
27 Aug 2023 16:35:16,292 INFO : 44% Done
27 Aug 2023 16:35:16,494 INFO : 45% Done
27 Aug 2023 16:35:16,770 INFO : 46% Done
27 Aug 2023 16:35:17,014 INFO : 47% Done
27 Aug 2023 16:35:17,331 INFO : 48% Done
27 Aug 2023 16:35:17,734 INFO : 49% Done
27 Aug 2023 16:35:17,974 INFO : 50% Done
27 Aug 2023 16:35:18,318 INFO : 51% Done
27 Aug 2023 16:35:18,651 INFO : 52% Done
27 Aug 2023 16:35:18,917 INFO : 53% Done
27 Aug 2023 16:35:19,199 INFO : Inserting sp|P0A7V8|RS4_ECOLI
27 Aug 2023 16:35:19,303 INFO : 54% Done
27 Aug 2023 16:35:19,553 INFO : 55% Done
27 Aug 2023 16:35:19,815 INFO : 56% Done
27 Aug 2023 16:35:20,058 INFO : 57% Done
27 Aug 2023 16:35:20,373 INFO : 58% Done
27 Aug 2023 16:35:20,637 INFO : 59% Done
27 Aug 2023 16:35:20,770 INFO : Inserting sp|P0A7W1|RS5_ECOLI
27 Aug 2023 16:35:21,112 INFO : 60% Done
27 Aug 2023 16:35:21,375 INFO : 61% Done
27 Aug 2023 16:35:21,582 INFO : Inserting sp|P0A7W7|RS8_ECOLI
27 Aug 2023 16:35:21,756 INFO : Inserting sp|P0A7X3|RS9_ECOLI
27 Aug 2023 16:35:21,774 INFO : 62% Done
27 Aug 2023 16:35:22,098 INFO : Inserting sp|P0ADZ4|RS15_ECOLI
27 Aug 2023 16:35:22,184 INFO : Inserting sp|P0AA10|RL13_ECOLI
27 Aug 2023 16:35:22,202 INFO : 63% Done
27 Aug 2023 16:35:22,545 INFO : 64% Done
27 Aug 2023 16:35:22,838 INFO : 65% Done
27 Aug 2023 16:35:23,105 INFO : Inserting sp|P0ADY3|RL14_ECOLI
27 Aug 2023 16:35:23,221 INFO : 66% Done
27 Aug 2023 16:35:23,385 INFO : Inserting sp|P0ADY7|RL16_ECOLI
27 Aug 2023 16:35:23,490 INFO : 67% Done
27 Aug 2023 16:35:23,736 INFO : 68% Done
27 Aug 2023 16:35:23,892 INFO : Inserting sp|P0ADZ0|RL23_ECOLI
27 Aug 2023 16:35:24,057 INFO : Inserting sp|P0AG44|RL17_ECOLI
27 Aug 2023 16:35:24,071 INFO : 69% Done
27 Aug 2023 16:35:24,315 INFO : 70% Done
27 Aug 2023 16:35:24,472 INFO : Inserting sp|P0AG48|RL21_ECOLI
27 Aug 2023 16:35:24,649 INFO : Inserting sp|P0AG51|RL30_ECOLI
27 Aug 2023 16:35:24,668 INFO : 71% Done
27 Aug 2023 16:35:24,979 INFO : Inserting sp|P0AG55|RL6_ECOLI
27 Aug 2023 16:35:24,997 INFO : 72% Done
27 Aug 2023 16:35:25,338 INFO : 73% Done
27 Aug 2023 16:35:25,661 INFO : Inserting sp|P0AG67|RS1_ECOLI
27 Aug 2023 16:35:25,678 INFO : 74% Done
27 Aug 2023 16:35:26,184 INFO : 75% Done
27 Aug 2023 16:35:26,575 INFO : 76% Done
27 Aug 2023 16:35:26,939 INFO : 77% Done
27 Aug 2023 16:35:27,301 INFO : 78% Done
27 Aug 2023 16:35:27,666 INFO : 79% Done
27 Aug 2023 16:35:27,879 INFO : Inserting sp|P60422|RL2_ECOLI
27 Aug 2023 16:35:28,047 INFO : 80% Done
27 Aug 2023 16:35:28,263 INFO : 81% Done
27 Aug 2023 16:35:28,585 INFO : 82% Done
27 Aug 2023 16:35:28,879 INFO : 83% Done
27 Aug 2023 16:35:29,213 INFO : 84% Done
27 Aug 2023 16:35:29,406 INFO : 85% Done
27 Aug 2023 16:35:29,729 INFO : 86% Done
27 Aug 2023 16:35:30,009 INFO : 87% Done
27 Aug 2023 16:35:30,251 INFO : 88% Done
27 Aug 2023 16:35:30,543 INFO : 89% Done
27 Aug 2023 16:35:30,791 INFO : 90% Done
27 Aug 2023 16:35:31,039 INFO : 91% Done
27 Aug 2023 16:35:31,418 INFO : 92% Done
27 Aug 2023 16:35:31,499 INFO : Inserting sp|P60438|RL3_ECOLI
27 Aug 2023 16:35:31,670 INFO : Inserting sp|P60624|RL24_ECOLI
27 Aug 2023 16:35:31,688 INFO : 93% Done
27 Aug 2023 16:35:31,848 INFO : Inserting sp|P60723|RL4_ECOLI
27 Aug 2023 16:35:32,046 INFO : 94% Done
27 Aug 2023 16:35:32,278 INFO : Inserting sp|P61175|RL22_ECOLI
27 Aug 2023 16:35:32,295 INFO : 95% Done
27 Aug 2023 16:35:32,626 INFO : 96% Done
27 Aug 2023 16:35:32,950 INFO : 97% Done
27 Aug 2023 16:35:33,184 INFO : Inserting sp|P62399|RL5_ECOLI
27 Aug 2023 16:35:33,284 INFO : 98% Done
27 Aug 2023 16:35:33,438 INFO : Inserting sp|P68679|RS21_ECOLI
27 Aug 2023 16:35:33,526 INFO : Inserting sp|P68919|RL25_ECOLI
27 Aug 2023 16:35:33,531 INFO : Done parsing Skyline document.
27 Aug 2023 16:39:42,683 INFO : Creating and populating temp tables for Proportion values
27 Aug 2023 16:39:42,986 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
27 Aug 2023 16:39:44,148 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
27 Aug 2023 16:39:44,891 INFO : Cleaning up temp tables
27 Aug 2023 16:39:45,167 INFO : Completed import of Skyline document from S4_22_33_+S4_23_6_230317_onlyRiboProt_2023-08-23_02-21-50.sky.zip
27 Aug 2023 16:39:45,169 INFO : 100% Done
27 Aug 2023 16:39:45,188 INFO : Done importing xar
27 Aug 2023 16:39:45,189 INFO : Loading pages and webpart properties
27 Aug 2023 16:39:45,252 INFO : Done importing 3 page(s) with 8 webpart(s)
27 Aug 2023 16:39:45,252 INFO : Loading File Browser config
27 Aug 2023 16:39:45,252 INFO : Done importing File Browser config
27 Aug 2023 16:39:45,254 INFO : Starting Sample Status Data import
27 Aug 2023 16:39:45,254 INFO : No sample types XAR file to process.
27 Aug 2023 16:39:45,254 INFO : Finished importing Sample Status Data
27 Aug 2023 16:39:45,262 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
27 Aug 2023 16:39:45,264 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
27 Aug 2023 16:39:45,264 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
27 Aug 2023 16:39:45,265 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
27 Aug 2023 16:39:45,265 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
27 Aug 2023 16:39:45,266 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
27 Aug 2023 16:39:45,268 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
27 Aug 2023 16:39:45,274 INFO : Moving files to folder /Panorama Public/2023/U of Leipzig AG Bioanalytics - Ribosome and creating symlinks
27 Aug 2023 16:39:45,870 INFO : Aligning data files urls in folder: /Panorama Public/2023/U of Leipzig AG Bioanalytics - Ribosome
27 Aug 2023 16:39:45,891 INFO : Importing files metadata.
27 Aug 2023 16:39:45,892 INFO :
27 Aug 2023 16:39:45,892 INFO : Experiment import completed successfully.
27 Aug 2023 16:39:45,892 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
27 Aug 2023 16:39:56,022 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
27 Aug 2023 16:39:56,023 INFO :
27 Aug 2023 16:39:56,023 INFO : Checking for library folders.
27 Aug 2023 16:39:56,024 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
27 Aug 2023 16:39:56,045 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
27 Aug 2023 16:39:56,045 INFO :
27 Aug 2023 16:39:56,045 INFO : Finishing up experiment copy.
27 Aug 2023 16:39:56,047 INFO : Updating TargetedMS experiment entry in target folder /Panorama Public/2023/U of Leipzig AG Bioanalytics - Ribosome
27 Aug 2023 16:39:56,048 INFO : Setting version on new experiment to 1
27 Aug 2023 16:39:56,053 INFO : Updating permanent link to point to the new copy of the data.
27 Aug 2023 16:39:56,059 INFO : Removing copy permissions given to Panorama Public
27 Aug 2023 16:39:56,075 INFO : Adding read permissions to all users that are folder admins in the source folder.
27 Aug 2023 16:39:56,076 INFO : Assigning ReaderRole to daniela.volke@bbz.uni-leipzig.de
27 Aug 2023 16:39:56,076 INFO : Assigning ReaderRole to ralf.hoffmann@bbz.uni-leipzig.de
27 Aug 2023 16:39:56,076 INFO : Assigning PanoramaPublicSubmitterRole to daniela.volke@bbz.uni-leipzig.de
27 Aug 2023 16:39:56,076 INFO : Assigning PanoramaPublicSubmitterRole to ralf.hoffmann@bbz.uni-leipzig.de
27 Aug 2023 16:39:56,090 INFO : Adding user daniela.volke@bbz.uni-leipzig.de to group Panorama Public Submitters
27 Aug 2023 16:39:56,094 INFO : User ralf.hoffmann@bbz.uni-leipzig.de is already a member of group Panorama Public Submitters
27 Aug 2023 16:39:56,094 INFO : Updating the 'Raw Data' tab configuration
27 Aug 2023 16:39:56,096 INFO : Creating a reviewer account.
27 Aug 2023 16:39:56,327 INFO : Created reviewer with email: User panorama+reviewer207@proteinms.net
27 Aug 2023 16:39:56,343 INFO : Adding user panorama+reviewer207@proteinms.net to group Reviewers
27 Aug 2023 16:39:56,344 INFO : Hiding the Data Pipeline tab.
27 Aug 2023 16:39:56,349 INFO : Updating Submission. Setting copiedExperimentId to 1675
27 Aug 2023 16:39:58,336 INFO : Assigning a ProteomeXchange ID.
27 Aug 2023 16:39:58,497 INFO : Assigned ProteomeXchange ID: PXD044892
27 Aug 2023 16:39:58,497 INFO : Assigning a DOI.
27 Aug 2023 16:40:01,286 INFO : Assigned DOI: 10.6069/3f7w-2t74
27 Aug 2023 16:40:01,354 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'