Copying experiment: Targeted Proteomics Reveals Quantitative Differences in Low Abundance Glycosyltransferases of Patients with Congenital Disorders of Glycosylation

U of Heidelberg Mass Spec Core - Sakson_Beedgen_et_al_MRM

Job Status

Created: 2023-12-22 01:06:16
Modified: 2023-12-22 01:06:48
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Copying experiment: Targeted Proteomics Reveals Quantitative Differences in Low Abundance Glycosyltransferases of Patients with Congenital Disorders of Glycosylation
File Path: /data/labkey/files/Panorama Public/2023/U of Heidelberg Mass Spec Core - Sakson_Beedgen_et_al_MRM/@files/Experiment_1509.log
Files: Experiment_1509.log
Completed Runs: Figures_4_5_6_7_8A_Heidelberg_CDG-Patients_2023-12-22_02-32-43.sky.zip
Figure_8B_Freiburg_ALG1-CDG-Patients_Comparison_2023-12-22_02-34-55.sky.zip
173_peptides_iRTs_chromatogram_library_2023-12-22_00-47-19.sky.zip
Figures_3_and_S3_HEK_293T_Fibroblasts_HeLa_2023-12-22_01-03-03.sky.zip
Figure_9_Freiburg_ALG11_I-CDG_Natural_Variant_2023-12-22_01-53-52.sky.zip
Figure_S5_Freiburg_ALG11_I-CDG_Natural_Variant_2023-12-22_01-59-41.sky.zip

Log File


22 Dec 2023 01:06:16,169 INFO : Copying experiment "Targeted Proteomics Reveals Quantitative Differences in Low Abundance Glycosyltransferases of Patients with Congenital Disorders of Glycosylation" from folder /U of Heidelberg - Mass Spec Core/Sakson_Beedgen_et_al_MRM to /Panorama Public/2023/U of Heidelberg Mass Spec Core - Sakson_Beedgen_et_al_MRM
22 Dec 2023 01:06:16,169 INFO : =======================================
22 Dec 2023 01:06:16,215 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
22 Dec 2023 01:06:16,216 INFO :
22 Dec 2023 01:06:16,216 INFO : Exporting experiment.
22 Dec 2023 01:06:19,360 INFO : Exporting files metadata.
22 Dec 2023 01:06:19,455 INFO :
22 Dec 2023 01:06:19,455 INFO : Experiment export completed successfully.
22 Dec 2023 01:06:19,455 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
22 Dec 2023 01:06:19,478 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
22 Dec 2023 01:06:19,478 INFO :
22 Dec 2023 01:06:19,478 INFO : Importing experiment.
22 Dec 2023 01:06:19,480 INFO : Loading folder properties (folder type, settings and active modules)
22 Dec 2023 01:06:19,547 INFO : Done importing folder properties (folder type, settings and active modules)
22 Dec 2023 01:06:19,548 INFO : Loading container specific module properties
22 Dec 2023 01:06:19,551 INFO : Done importing container specific module properties
22 Dec 2023 01:06:19,553 INFO : Loading grid views
22 Dec 2023 01:06:19,561 INFO : 2 custom views imported
22 Dec 2023 01:06:19,561 INFO : Done importing grid views
22 Dec 2023 01:06:19,562 INFO : Loading etl definitions
22 Dec 2023 01:06:19,563 INFO : Loading wikis
22 Dec 2023 01:06:19,569 INFO : 1 wiki imported
22 Dec 2023 01:06:19,569 INFO : Done importing wikis
22 Dec 2023 01:06:19,571 INFO : Starting Data Class Importer
22 Dec 2023 01:06:19,571 INFO : No types XAR file to process.
22 Dec 2023 01:06:19,571 INFO : Finished Data Class Importer
22 Dec 2023 01:06:19,572 INFO : Starting to copy files
22 Dec 2023 01:06:19,572 INFO : Copied 0 files
22 Dec 2023 01:06:19,572 INFO : Ensuring exp.data rows exist for imported files
22 Dec 2023 01:06:19,703 INFO : Starting Sample Type Importer
22 Dec 2023 01:06:19,703 INFO : No types XAR file to process.
22 Dec 2023 01:06:19,703 INFO : Finished Sample Type Importer
22 Dec 2023 01:06:19,704 INFO : Loading xar
22 Dec 2023 01:06:20,120 INFO : Starting import from Figures_3_and_S3_HEK_293T_Fibroblasts_HeLa_2023-12-22_01-03-03.sky.zip
22 Dec 2023 01:06:20,123 INFO : Starting to import Skyline document from Figures_3_and_S3_HEK_293T_Fibroblasts_HeLa_2023-12-22_01-03-03.sky.zip
22 Dec 2023 01:06:20,124 INFO : Expanding 19.10.15_iRT_10_total_Val.irtdb
22 Dec 2023 01:06:20,124 INFO : Expanding Roman_optimierteCE_iRT.optdb
22 Dec 2023 01:06:20,125 INFO : Expanding Figures_3_and_S3_HEK_293T_Fibroblasts_HeLa.skyd
22 Dec 2023 01:06:20,153 INFO : Expanding Figures_3_and_S3_HEK_293T_Fibroblasts_HeLa.sky.view
22 Dec 2023 01:06:20,154 INFO : Expanding Figures_3_and_S3_HEK_293T_Fibroblasts_HeLa.sky
22 Dec 2023 01:06:20,168 INFO : 1% Done
22 Dec 2023 01:06:20,420 INFO : Inserting sp|Q9BT22|ALG1_HUMAN
22 Dec 2023 01:06:20,426 INFO : 2% Done
22 Dec 2023 01:06:20,458 INFO : 4% Done
22 Dec 2023 01:06:20,484 INFO : Inserting sp|Q9H553|ALG2_HUMAN
22 Dec 2023 01:06:20,489 INFO : 5% Done
22 Dec 2023 01:06:20,511 INFO : 6% Done
22 Dec 2023 01:06:20,536 INFO : 8% Done
22 Dec 2023 01:06:20,559 INFO : Inserting sp|Q92685|ALG3_HUMAN
22 Dec 2023 01:06:20,564 INFO : 10% Done
22 Dec 2023 01:06:20,585 INFO : Inserting sp|Q9Y673|ALG5_HUMAN
22 Dec 2023 01:06:20,611 INFO : 12% Done
22 Dec 2023 01:06:20,635 INFO : 13% Done
22 Dec 2023 01:06:20,654 INFO : Inserting sp|Q9Y672|ALG6_HUMAN
22 Dec 2023 01:06:20,659 INFO : 14% Done
22 Dec 2023 01:06:20,680 INFO : 15% Done
22 Dec 2023 01:06:20,701 INFO : 17% Done
22 Dec 2023 01:06:20,721 INFO : 18% Done
22 Dec 2023 01:06:20,745 INFO : 19% Done
22 Dec 2023 01:06:20,769 INFO : Inserting sp|Q9H3H5|ALG7_HUMAN
22 Dec 2023 01:06:20,775 INFO : 21% Done
22 Dec 2023 01:06:20,796 INFO : Inserting sp|Q9BVK2|ALG8_HUMAN
22 Dec 2023 01:06:20,801 INFO : 22% Done
22 Dec 2023 01:06:20,822 INFO : 23% Done
22 Dec 2023 01:06:20,843 INFO : Inserting sp|Q9H6U8|ALG9_HUMAN
22 Dec 2023 01:06:20,848 INFO : 25% Done
22 Dec 2023 01:06:20,869 INFO : 26% Done
22 Dec 2023 01:06:20,888 INFO : Inserting sp|Q5I7T1|ALG10_HUMAN
22 Dec 2023 01:06:20,893 INFO : 27% Done
22 Dec 2023 01:06:20,915 INFO : Inserting sp|Q2TAA5|ALG11_HUMAN
22 Dec 2023 01:06:20,920 INFO : 28% Done
22 Dec 2023 01:06:20,943 INFO : 30% Done
22 Dec 2023 01:06:20,967 INFO : 31% Done
22 Dec 2023 01:06:20,993 INFO : 32% Done
22 Dec 2023 01:06:21,012 INFO : Inserting sp|Q9BV10|ALG12_HUMAN
22 Dec 2023 01:06:21,017 INFO : 34% Done
22 Dec 2023 01:06:21,036 INFO : Inserting sp|Q9NP73-2|ALG13_HUMAN
22 Dec 2023 01:06:21,062 INFO : 36% Done
22 Dec 2023 01:06:21,096 INFO : Inserting sp|Q96AA3|RFT1_HUMAN
22 Dec 2023 01:06:21,101 INFO : 38% Done
22 Dec 2023 01:06:21,144 INFO : 40% Done
22 Dec 2023 01:06:21,166 INFO : Inserting sp|P04843|RPN1_HUMAN
22 Dec 2023 01:06:21,171 INFO : 41% Done
22 Dec 2023 01:06:21,196 INFO : 42% Done
22 Dec 2023 01:06:21,223 INFO : 44% Done
22 Dec 2023 01:06:21,244 INFO : 45% Done
22 Dec 2023 01:06:21,266 INFO : Inserting sp|O60762|DPM1_HUMAN
22 Dec 2023 01:06:21,271 INFO : 46% Done
22 Dec 2023 01:06:21,295 INFO : 47% Done
22 Dec 2023 01:06:21,319 INFO : 49% Done
22 Dec 2023 01:06:21,341 INFO : 50% Done
22 Dec 2023 01:06:21,362 INFO : Inserting sp|Q9P2X0-2|DPM3_HUMAN
22 Dec 2023 01:06:21,366 INFO : 51% Done
22 Dec 2023 01:06:21,388 INFO : 52% Done
22 Dec 2023 01:06:21,406 INFO : Inserting sp|Q9UKY4|POMT2_HUMAN
22 Dec 2023 01:06:21,411 INFO : 54% Done
22 Dec 2023 01:06:21,430 INFO : Inserting sp|Q6ZXV5|TMTC3_HUMAN
22 Dec 2023 01:06:21,455 INFO : 56% Done
22 Dec 2023 01:06:21,477 INFO : 57% Done
22 Dec 2023 01:06:21,498 INFO : 58% Done
22 Dec 2023 01:06:21,519 INFO : Inserting DPY19L1_HUMAN
22 Dec 2023 01:06:21,524 INFO : 59% Done
22 Dec 2023 01:06:21,546 INFO : 61% Done
22 Dec 2023 01:06:21,569 INFO : 62% Done
22 Dec 2023 01:06:21,588 INFO : Inserting sp|P46977|STT3A_HUMAN
22 Dec 2023 01:06:21,594 INFO : 63% Done
22 Dec 2023 01:06:21,621 INFO : 65% Done
22 Dec 2023 01:06:21,645 INFO : 66% Done
22 Dec 2023 01:06:21,669 INFO : 67% Done
22 Dec 2023 01:06:21,692 INFO : 68% Done
22 Dec 2023 01:06:21,716 INFO : 70% Done
22 Dec 2023 01:06:21,735 INFO : Inserting sp|Q8TCJ2|STT3B_HUMAN
22 Dec 2023 01:06:21,761 INFO : 72% Done
22 Dec 2023 01:06:21,784 INFO : 73% Done
22 Dec 2023 01:06:21,805 INFO : Inserting sp|Q9UGP8|SEC63_HUMAN
22 Dec 2023 01:06:21,810 INFO : 74% Done
22 Dec 2023 01:06:21,833 INFO : 75% Done
22 Dec 2023 01:06:21,856 INFO : 77% Done
22 Dec 2023 01:06:21,878 INFO : Inserting Biognosys|iRT-Kit
22 Dec 2023 01:06:21,887 INFO : 78% Done
22 Dec 2023 01:06:21,916 INFO : 79% Done
22 Dec 2023 01:06:21,928 INFO : 80% Done
22 Dec 2023 01:06:21,940 INFO : Done parsing Skyline document.
22 Dec 2023 01:06:21,940 INFO : Calculating iRT correlations for 9 sample(s)
22 Dec 2023 01:06:21,949 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:21,957 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:21,964 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:21,972 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:21,979 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:21,986 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:21,993 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:22,000 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:22,008 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:22,008 INFO : Finished calculating iRT correlations for all samples. 9 had a regression line calculated.
22 Dec 2023 01:06:22,071 INFO : Calculating fold changes
22 Dec 2023 01:06:22,797 INFO : 89% Done
22 Dec 2023 01:06:23,529 INFO : 98% Done
22 Dec 2023 01:06:23,529 INFO : Done calculating fold changes.
22 Dec 2023 01:06:23,530 INFO : Creating and populating temp tables for Proportion values
22 Dec 2023 01:06:23,701 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
22 Dec 2023 01:06:23,761 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
22 Dec 2023 01:06:23,782 INFO : Cleaning up temp tables
22 Dec 2023 01:06:24,290 INFO : Completed import of Skyline document from Figures_3_and_S3_HEK_293T_Fibroblasts_HeLa_2023-12-22_01-03-03.sky.zip
22 Dec 2023 01:06:24,292 INFO : 100% Done
22 Dec 2023 01:06:24,306 INFO : Starting import from Figure_9_Freiburg_ALG11_I-CDG_Natural_Variant_2023-12-22_01-53-52.sky.zip
22 Dec 2023 01:06:24,307 INFO : Starting to import Skyline document from Figure_9_Freiburg_ALG11_I-CDG_Natural_Variant_2023-12-22_01-53-52.sky.zip
22 Dec 2023 01:06:24,341 INFO : Expanding 20.08.06_iRT_10_RS.irtdb
22 Dec 2023 01:06:24,342 INFO : Expanding Figure_9_Freiburg_ALG11_I-CDG_Natural_Variant.skyd
22 Dec 2023 01:06:24,370 INFO : Expanding Figure_9_Freiburg_ALG11_I-CDG_Natural_Variant.sky.view
22 Dec 2023 01:06:24,371 INFO : Expanding Figure_9_Freiburg_ALG11_I-CDG_Natural_Variant.sky
22 Dec 2023 01:06:24,377 INFO : 6% Done
22 Dec 2023 01:06:24,676 INFO : 11% Done
22 Dec 2023 01:06:24,676 INFO : Inserting sp|Q2TAA5|ALG11_HUMAN
22 Dec 2023 01:06:24,681 INFO : 21% Done
22 Dec 2023 01:06:24,698 INFO : 31% Done
22 Dec 2023 01:06:24,712 INFO : 45% Done
22 Dec 2023 01:06:24,732 INFO : 63% Done
22 Dec 2023 01:06:24,749 INFO : Inserting Biognosys|iRT-Kit
22 Dec 2023 01:06:24,752 INFO : 66% Done
22 Dec 2023 01:06:24,757 INFO : 70% Done
22 Dec 2023 01:06:24,761 INFO : 73% Done
22 Dec 2023 01:06:24,765 INFO : 79% Done
22 Dec 2023 01:06:24,769 INFO : 83% Done
22 Dec 2023 01:06:24,774 INFO : 87% Done
22 Dec 2023 01:06:24,778 INFO : 90% Done
22 Dec 2023 01:06:24,782 INFO : 94% Done
22 Dec 2023 01:06:24,786 INFO : 97% Done
22 Dec 2023 01:06:24,790 INFO : 98% Done
22 Dec 2023 01:06:24,795 INFO : Done parsing Skyline document.
22 Dec 2023 01:06:24,795 INFO : Calculating iRT correlations for 4 sample(s)
22 Dec 2023 01:06:24,800 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:24,801 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:24,803 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:24,805 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:24,805 INFO : Finished calculating iRT correlations for all samples. 4 had a regression line calculated.
22 Dec 2023 01:06:24,806 INFO : Creating and populating temp tables for Proportion values
22 Dec 2023 01:06:24,959 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
22 Dec 2023 01:06:24,965 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
22 Dec 2023 01:06:24,968 INFO : Cleaning up temp tables
22 Dec 2023 01:06:25,366 INFO : Completed import of Skyline document from Figure_9_Freiburg_ALG11_I-CDG_Natural_Variant_2023-12-22_01-53-52.sky.zip
22 Dec 2023 01:06:25,370 INFO : 100% Done
22 Dec 2023 01:06:25,378 INFO : Starting import from Figure_S5_Freiburg_ALG11_I-CDG_Natural_Variant_2023-12-22_01-59-41.sky.zip
22 Dec 2023 01:06:25,380 INFO : Starting to import Skyline document from Figure_S5_Freiburg_ALG11_I-CDG_Natural_Variant_2023-12-22_01-59-41.sky.zip
22 Dec 2023 01:06:25,424 INFO : Expanding 20.08.06_iRT_10_RS.irtdb
22 Dec 2023 01:06:25,425 INFO : Expanding Figure_S5_Freiburg_ALG11_I-CDG_Natural_Variant.skyd
22 Dec 2023 01:06:25,462 INFO : Expanding Figure_S5_Freiburg_ALG11_I-CDG_Natural_Variant.sky.view
22 Dec 2023 01:06:25,463 INFO : Expanding Figure_S5_Freiburg_ALG11_I-CDG_Natural_Variant.sky
22 Dec 2023 01:06:25,468 INFO : 12% Done
22 Dec 2023 01:06:25,802 INFO : Inserting sp|cs001|ALG11_Mutant
22 Dec 2023 01:06:25,807 INFO : 24% Done
22 Dec 2023 01:06:25,821 INFO : 28% Done
22 Dec 2023 01:06:25,821 INFO : Inserting Biognosys|iRT-Kit
22 Dec 2023 01:06:25,824 INFO : 32% Done
22 Dec 2023 01:06:25,829 INFO : 36% Done
22 Dec 2023 01:06:25,834 INFO : 44% Done
22 Dec 2023 01:06:25,838 INFO : 48% Done
22 Dec 2023 01:06:25,843 INFO : 56% Done
22 Dec 2023 01:06:25,848 INFO : 60% Done
22 Dec 2023 01:06:25,853 INFO : 64% Done
22 Dec 2023 01:06:25,858 INFO : 71% Done
22 Dec 2023 01:06:25,863 INFO : 75% Done
22 Dec 2023 01:06:25,867 INFO : 80% Done
22 Dec 2023 01:06:25,873 INFO : Done parsing Skyline document.
22 Dec 2023 01:06:25,873 INFO : Calculating iRT correlations for 6 sample(s)
22 Dec 2023 01:06:25,878 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:25,879 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:25,881 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:25,882 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:25,884 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:25,885 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:25,885 INFO : Finished calculating iRT correlations for all samples. 6 had a regression line calculated.
22 Dec 2023 01:06:25,950 INFO : Calculating fold changes
22 Dec 2023 01:06:25,961 INFO : 86% Done
22 Dec 2023 01:06:25,973 INFO : 92% Done
22 Dec 2023 01:06:25,984 INFO : 98% Done
22 Dec 2023 01:06:25,984 INFO : Done calculating fold changes.
22 Dec 2023 01:06:25,985 INFO : Creating and populating temp tables for Proportion values
22 Dec 2023 01:06:26,134 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
22 Dec 2023 01:06:26,139 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
22 Dec 2023 01:06:26,143 INFO : Cleaning up temp tables
22 Dec 2023 01:06:26,563 INFO : Completed import of Skyline document from Figure_S5_Freiburg_ALG11_I-CDG_Natural_Variant_2023-12-22_01-59-41.sky.zip
22 Dec 2023 01:06:26,567 INFO : 100% Done
22 Dec 2023 01:06:26,576 INFO : Starting import from Figures_4_5_6_7_8A_Heidelberg_CDG-Patients_2023-12-22_02-32-43.sky.zip
22 Dec 2023 01:06:26,578 INFO : Starting to import Skyline document from Figures_4_5_6_7_8A_Heidelberg_CDG-Patients_2023-12-22_02-32-43.sky.zip
22 Dec 2023 01:06:26,635 INFO : Expanding 19.10.15_iRT_10_total_Val.irtdb
22 Dec 2023 01:06:26,636 INFO : Expanding Roman_optimierteCE_iRT.optdb
22 Dec 2023 01:06:26,636 INFO : Expanding Figures_4_5_6_7_8A_Heidelberg_CDG-Patients.skyd
22 Dec 2023 01:06:26,678 INFO : Expanding Figures_4_5_6_7_8A_Heidelberg_CDG-Patients.sky.view
22 Dec 2023 01:06:26,679 INFO : Expanding Figures_4_5_6_7_8A_Heidelberg_CDG-Patients.sky
22 Dec 2023 01:06:26,693 INFO : 1% Done
22 Dec 2023 01:06:27,007 INFO : Inserting sp|Q9BT22|ALG1_HUMAN
22 Dec 2023 01:06:27,014 INFO : 2% Done
22 Dec 2023 01:06:27,056 INFO : 4% Done
22 Dec 2023 01:06:27,090 INFO : Inserting sp|Q9H553|ALG2_HUMAN
22 Dec 2023 01:06:27,096 INFO : 6% Done
22 Dec 2023 01:06:27,131 INFO : 7% Done
22 Dec 2023 01:06:27,164 INFO : 9% Done
22 Dec 2023 01:06:27,195 INFO : Inserting sp|Q9Y673|ALG5_HUMAN
22 Dec 2023 01:06:27,200 INFO : 10% Done
22 Dec 2023 01:06:27,230 INFO : 11% Done
22 Dec 2023 01:06:27,262 INFO : 13% Done
22 Dec 2023 01:06:27,289 INFO : Inserting sp|Q9Y672|ALG6_HUMAN
22 Dec 2023 01:06:27,294 INFO : 14% Done
22 Dec 2023 01:06:27,323 INFO : 15% Done
22 Dec 2023 01:06:27,353 INFO : 16% Done
22 Dec 2023 01:06:27,385 INFO : 18% Done
22 Dec 2023 01:06:27,416 INFO : 19% Done
22 Dec 2023 01:06:27,449 INFO : Inserting sp|Q9BVK2|ALG8_HUMAN
22 Dec 2023 01:06:27,455 INFO : 20% Done
22 Dec 2023 01:06:27,486 INFO : 22% Done
22 Dec 2023 01:06:27,516 INFO : Inserting sp|Q9H6U8|ALG9_HUMAN
22 Dec 2023 01:06:27,521 INFO : 23% Done
22 Dec 2023 01:06:27,549 INFO : 24% Done
22 Dec 2023 01:06:27,575 INFO : Inserting sp|Q5I7T1|ALG10_HUMAN
22 Dec 2023 01:06:27,581 INFO : 26% Done
22 Dec 2023 01:06:27,609 INFO : Inserting sp|Q2TAA5|ALG11_HUMAN
22 Dec 2023 01:06:27,616 INFO : 27% Done
22 Dec 2023 01:06:27,653 INFO : 28% Done
22 Dec 2023 01:06:27,687 INFO : 30% Done
22 Dec 2023 01:06:27,726 INFO : 31% Done
22 Dec 2023 01:06:27,754 INFO : Inserting sp|Q9BV10|ALG12_HUMAN
22 Dec 2023 01:06:27,760 INFO : 33% Done
22 Dec 2023 01:06:27,786 INFO : Inserting sp|Q9NP73-2|ALG13_HUMAN
22 Dec 2023 01:06:27,791 INFO : 34% Done
22 Dec 2023 01:06:27,820 INFO : 35% Done
22 Dec 2023 01:06:27,855 INFO : Inserting sp|Q96AA3|RFT1_HUMAN
22 Dec 2023 01:06:27,860 INFO : 37% Done
22 Dec 2023 01:06:27,890 INFO : 38% Done
22 Dec 2023 01:06:27,926 INFO : 39% Done
22 Dec 2023 01:06:27,956 INFO : Inserting sp|P04843|RPN1_HUMAN
22 Dec 2023 01:06:27,962 INFO : 41% Done
22 Dec 2023 01:06:27,997 INFO : 42% Done
22 Dec 2023 01:06:28,041 INFO : 43% Done
22 Dec 2023 01:06:28,076 INFO : 45% Done
22 Dec 2023 01:06:28,104 INFO : Inserting sp|O60762|DPM1_HUMAN
22 Dec 2023 01:06:28,110 INFO : 46% Done
22 Dec 2023 01:06:28,141 INFO : 47% Done
22 Dec 2023 01:06:28,175 INFO : 49% Done
22 Dec 2023 01:06:28,207 INFO : 50% Done
22 Dec 2023 01:06:28,241 INFO : Inserting sp|Q9P2X0-2|DPM3_HUMAN
22 Dec 2023 01:06:28,246 INFO : 51% Done
22 Dec 2023 01:06:28,278 INFO : 52% Done
22 Dec 2023 01:06:28,304 INFO : Inserting sp|Q6ZXV5|TMTC3_HUMAN
22 Dec 2023 01:06:28,310 INFO : 54% Done
22 Dec 2023 01:06:28,380 INFO : 56% Done
22 Dec 2023 01:06:28,410 INFO : 57% Done
22 Dec 2023 01:06:28,442 INFO : Inserting DPY19L1_HUMAN
22 Dec 2023 01:06:28,449 INFO : 58% Done
22 Dec 2023 01:06:28,489 INFO : 60% Done
22 Dec 2023 01:06:28,525 INFO : 61% Done
22 Dec 2023 01:06:28,557 INFO : Inserting sp|P46977|STT3A_HUMAN
22 Dec 2023 01:06:28,566 INFO : 62% Done
22 Dec 2023 01:06:28,623 INFO : 64% Done
22 Dec 2023 01:06:28,657 INFO : 65% Done
22 Dec 2023 01:06:28,691 INFO : 66% Done
22 Dec 2023 01:06:28,723 INFO : 68% Done
22 Dec 2023 01:06:28,757 INFO : 69% Done
22 Dec 2023 01:06:28,785 INFO : Inserting sp|Q8TCJ2|STT3B_HUMAN
22 Dec 2023 01:06:28,791 INFO : 70% Done
22 Dec 2023 01:06:28,823 INFO : 71% Done
22 Dec 2023 01:06:28,856 INFO : 73% Done
22 Dec 2023 01:06:28,889 INFO : Inserting sp|Q9UGP8|SEC63_HUMAN
22 Dec 2023 01:06:28,895 INFO : 74% Done
22 Dec 2023 01:06:28,932 INFO : 75% Done
22 Dec 2023 01:06:28,961 INFO : 76% Done
22 Dec 2023 01:06:28,993 INFO : Inserting Biognosys|iRT-Kit
22 Dec 2023 01:06:28,996 INFO : 77% Done
22 Dec 2023 01:06:29,015 INFO : 78% Done
22 Dec 2023 01:06:29,050 INFO : 79% Done
22 Dec 2023 01:06:29,067 INFO : 80% Done
22 Dec 2023 01:06:29,085 INFO : Done parsing Skyline document.
22 Dec 2023 01:06:29,085 INFO : Calculating iRT correlations for 14 sample(s)
22 Dec 2023 01:06:29,094 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:29,102 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:29,109 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:29,117 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:29,125 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:29,133 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:29,142 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:29,150 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:29,158 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:29,166 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:29,173 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:29,182 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:29,190 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:29,197 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:29,198 INFO : Finished calculating iRT correlations for all samples. 14 had a regression line calculated.
22 Dec 2023 01:06:29,263 INFO : Calculating fold changes
22 Dec 2023 01:06:30,024 INFO : 86% Done
22 Dec 2023 01:06:30,771 INFO : 92% Done
22 Dec 2023 01:06:31,519 INFO : 98% Done
22 Dec 2023 01:06:31,519 INFO : Done calculating fold changes.
22 Dec 2023 01:06:31,520 INFO : Creating and populating temp tables for Proportion values
22 Dec 2023 01:06:31,698 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
22 Dec 2023 01:06:31,789 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
22 Dec 2023 01:06:31,828 INFO : Cleaning up temp tables
22 Dec 2023 01:06:32,244 INFO : Completed import of Skyline document from Figures_4_5_6_7_8A_Heidelberg_CDG-Patients_2023-12-22_02-32-43.sky.zip
22 Dec 2023 01:06:32,246 INFO : 100% Done
22 Dec 2023 01:06:32,256 INFO : Starting import from Figure_8B_Freiburg_ALG1-CDG-Patients_Comparison_2023-12-22_02-34-55.sky.zip
22 Dec 2023 01:06:32,257 INFO : Starting to import Skyline document from Figure_8B_Freiburg_ALG1-CDG-Patients_Comparison_2023-12-22_02-34-55.sky.zip
22 Dec 2023 01:06:32,294 INFO : Expanding 20.08.06_iRT_10_RS.irtdb
22 Dec 2023 01:06:32,295 INFO : Expanding Figure_8B_Freiburg_ALG1-CDG-Patients_Comparison.skyd
22 Dec 2023 01:06:32,318 INFO : Expanding Figure_8B_Freiburg_ALG1-CDG-Patients_Comparison.sky.view
22 Dec 2023 01:06:32,322 INFO : Expanding Figure_8B_Freiburg_ALG1-CDG-Patients_Comparison.sky
22 Dec 2023 01:06:32,332 INFO : 1% Done
22 Dec 2023 01:06:32,621 INFO : Inserting sp|Q9BT22|ALG1_HUMAN
22 Dec 2023 01:06:32,626 INFO : 2% Done
22 Dec 2023 01:06:32,647 INFO : 4% Done
22 Dec 2023 01:06:32,665 INFO : Inserting sp|Q9H553|ALG2_HUMAN
22 Dec 2023 01:06:32,671 INFO : 6% Done
22 Dec 2023 01:06:32,694 INFO : 7% Done
22 Dec 2023 01:06:32,713 INFO : 9% Done
22 Dec 2023 01:06:32,731 INFO : Inserting sp|Q9Y673|ALG5_HUMAN
22 Dec 2023 01:06:32,735 INFO : 10% Done
22 Dec 2023 01:06:32,751 INFO : 11% Done
22 Dec 2023 01:06:32,768 INFO : 13% Done
22 Dec 2023 01:06:32,781 INFO : Inserting sp|Q9Y672|ALG6_HUMAN
22 Dec 2023 01:06:32,786 INFO : 14% Done
22 Dec 2023 01:06:32,802 INFO : 15% Done
22 Dec 2023 01:06:32,818 INFO : 16% Done
22 Dec 2023 01:06:32,834 INFO : 18% Done
22 Dec 2023 01:06:32,850 INFO : 19% Done
22 Dec 2023 01:06:32,867 INFO : Inserting sp|Q9H3H5|ALG7_HUMAN
22 Dec 2023 01:06:32,873 INFO : 20% Done
22 Dec 2023 01:06:32,889 INFO : Inserting sp|Q9BVK2|ALG8_HUMAN
22 Dec 2023 01:06:32,893 INFO : 22% Done
22 Dec 2023 01:06:32,907 INFO : 23% Done
22 Dec 2023 01:06:32,922 INFO : Inserting sp|Q9H6U8|ALG9_HUMAN
22 Dec 2023 01:06:32,926 INFO : 24% Done
22 Dec 2023 01:06:32,939 INFO : 26% Done
22 Dec 2023 01:06:32,952 INFO : Inserting sp|Q5I7T1|ALG10_HUMAN
22 Dec 2023 01:06:32,972 INFO : 27% Done
22 Dec 2023 01:06:32,987 INFO : Inserting sp|Q2TAA5|ALG11_HUMAN
22 Dec 2023 01:06:32,992 INFO : 29% Done
22 Dec 2023 01:06:33,008 INFO : 30% Done
22 Dec 2023 01:06:33,025 INFO : 32% Done
22 Dec 2023 01:06:33,041 INFO : Inserting sp|Q9BV10|ALG12_HUMAN
22 Dec 2023 01:06:33,045 INFO : 34% Done
22 Dec 2023 01:06:33,058 INFO : Inserting sp|Q9NP73-2|ALG13_HUMAN
22 Dec 2023 01:06:33,074 INFO : 36% Done
22 Dec 2023 01:06:33,090 INFO : Inserting sp|Q96AA3|RFT1_HUMAN
22 Dec 2023 01:06:33,095 INFO : 38% Done
22 Dec 2023 01:06:33,128 INFO : 40% Done
22 Dec 2023 01:06:33,143 INFO : Inserting sp|P04843|RPN1_HUMAN
22 Dec 2023 01:06:33,146 INFO : 41% Done
22 Dec 2023 01:06:33,162 INFO : 42% Done
22 Dec 2023 01:06:33,181 INFO : 43% Done
22 Dec 2023 01:06:33,196 INFO : 45% Done
22 Dec 2023 01:06:33,211 INFO : Inserting sp|O60762|DPM1_HUMAN
22 Dec 2023 01:06:33,215 INFO : 46% Done
22 Dec 2023 01:06:33,232 INFO : 47% Done
22 Dec 2023 01:06:33,248 INFO : 48% Done
22 Dec 2023 01:06:33,263 INFO : 50% Done
22 Dec 2023 01:06:33,277 INFO : Inserting sp|Q9P2X0-2|DPM3_HUMAN
22 Dec 2023 01:06:33,294 INFO : 52% Done
22 Dec 2023 01:06:33,307 INFO : Inserting sp|Q9UKY4|POMT2_HUMAN
22 Dec 2023 01:06:33,311 INFO : 54% Done
22 Dec 2023 01:06:33,323 INFO : Inserting sp|Q6ZXV5|TMTC3_HUMAN
22 Dec 2023 01:06:33,339 INFO : 56% Done
22 Dec 2023 01:06:33,353 INFO : 57% Done
22 Dec 2023 01:06:33,367 INFO : 58% Done
22 Dec 2023 01:06:33,380 INFO : Inserting DPY19L1_HUMAN
22 Dec 2023 01:06:33,384 INFO : 59% Done
22 Dec 2023 01:06:33,398 INFO : 60% Done
22 Dec 2023 01:06:33,413 INFO : 62% Done
22 Dec 2023 01:06:33,425 INFO : Inserting sp|P46977|STT3A_HUMAN
22 Dec 2023 01:06:33,429 INFO : 63% Done
22 Dec 2023 01:06:33,447 INFO : 65% Done
22 Dec 2023 01:06:33,463 INFO : 66% Done
22 Dec 2023 01:06:33,478 INFO : 67% Done
22 Dec 2023 01:06:33,493 INFO : 68% Done
22 Dec 2023 01:06:33,509 INFO : 70% Done
22 Dec 2023 01:06:33,521 INFO : Inserting sp|Q8TCJ2|STT3B_HUMAN
22 Dec 2023 01:06:33,538 INFO : 72% Done
22 Dec 2023 01:06:33,553 INFO : 73% Done
22 Dec 2023 01:06:33,567 INFO : Inserting sp|Q9UGP8|SEC63_HUMAN
22 Dec 2023 01:06:33,571 INFO : 74% Done
22 Dec 2023 01:06:33,585 INFO : 75% Done
22 Dec 2023 01:06:33,599 INFO : 77% Done
22 Dec 2023 01:06:33,613 INFO : Inserting Biognosys|iRT-Kit
22 Dec 2023 01:06:33,619 INFO : 78% Done
22 Dec 2023 01:06:33,641 INFO : 79% Done
22 Dec 2023 01:06:33,650 INFO : 80% Done
22 Dec 2023 01:06:33,659 INFO : Done parsing Skyline document.
22 Dec 2023 01:06:33,659 INFO : Calculating iRT correlations for 6 sample(s)
22 Dec 2023 01:06:33,669 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:33,675 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:33,682 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:33,689 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:33,695 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:33,702 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:33,702 INFO : Finished calculating iRT correlations for all samples. 6 had a regression line calculated.
22 Dec 2023 01:06:33,784 INFO : Calculating fold changes
22 Dec 2023 01:06:34,362 INFO : 86% Done
22 Dec 2023 01:06:34,931 INFO : 92% Done
22 Dec 2023 01:06:35,502 INFO : 98% Done
22 Dec 2023 01:06:35,502 INFO : Done calculating fold changes.
22 Dec 2023 01:06:35,503 INFO : Creating and populating temp tables for Proportion values
22 Dec 2023 01:06:35,656 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
22 Dec 2023 01:06:35,693 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
22 Dec 2023 01:06:35,706 INFO : Cleaning up temp tables
22 Dec 2023 01:06:36,117 INFO : Completed import of Skyline document from Figure_8B_Freiburg_ALG1-CDG-Patients_Comparison_2023-12-22_02-34-55.sky.zip
22 Dec 2023 01:06:36,119 INFO : 100% Done
22 Dec 2023 01:06:36,136 INFO : Done importing xar
22 Dec 2023 01:06:36,138 INFO : Loading pages and webpart properties
22 Dec 2023 01:06:36,225 INFO : Done importing 4 page(s) with 8 webpart(s)
22 Dec 2023 01:06:36,225 INFO : Loading File Browser config
22 Dec 2023 01:06:36,225 INFO : Done importing File Browser config
22 Dec 2023 01:06:36,227 INFO : Starting Sample Status Data import
22 Dec 2023 01:06:36,227 INFO : No sample types XAR file to process.
22 Dec 2023 01:06:36,227 INFO : Finished importing Sample Status Data
22 Dec 2023 01:06:36,235 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
22 Dec 2023 01:06:36,237 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
22 Dec 2023 01:06:36,237 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
22 Dec 2023 01:06:36,238 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
22 Dec 2023 01:06:36,238 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
22 Dec 2023 01:06:36,238 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
22 Dec 2023 01:06:36,240 INFO : Loading subfolders and container tabs
22 Dec 2023 01:06:36,312 INFO : New folder created with inherited permissions: /Panorama Public/2023/U of Heidelberg Mass Spec Core - Sakson_Beedgen_et_al_MRM/Sakson_Beedgen_et_al_Chromatogram_Library
22 Dec 2023 01:06:36,312 INFO : Loading folder archive for Sakson_Beedgen_et_al_Chromatogram_Library
22 Dec 2023 01:06:36,313 INFO : Loading folder properties (folder type, settings and active modules)
22 Dec 2023 01:06:36,424 INFO : Done importing folder properties (folder type, settings and active modules)
22 Dec 2023 01:06:36,425 INFO : Loading container specific module properties
22 Dec 2023 01:06:36,429 INFO : Done importing container specific module properties
22 Dec 2023 01:06:36,430 INFO : Loading etl definitions
22 Dec 2023 01:06:36,431 INFO : Loading wikis
22 Dec 2023 01:06:36,435 INFO : 0 wikis imported
22 Dec 2023 01:06:36,435 INFO : Done importing wikis
22 Dec 2023 01:06:36,437 INFO : Starting Data Class Importer
22 Dec 2023 01:06:36,437 INFO : No types XAR file to process.
22 Dec 2023 01:06:36,437 INFO : Finished Data Class Importer
22 Dec 2023 01:06:36,438 INFO : Starting to copy files
22 Dec 2023 01:06:36,438 INFO : Copied 0 files
22 Dec 2023 01:06:36,438 INFO : Ensuring exp.data rows exist for imported files
22 Dec 2023 01:06:36,454 INFO : Starting Sample Type Importer
22 Dec 2023 01:06:36,454 INFO : No types XAR file to process.
22 Dec 2023 01:06:36,454 INFO : Finished Sample Type Importer
22 Dec 2023 01:06:36,455 INFO : Loading xar
22 Dec 2023 01:06:36,584 INFO : Starting import from 173_peptides_iRTs_chromatogram_library_2023-12-22_00-47-19.sky.zip
22 Dec 2023 01:06:36,598 INFO : Starting to import Skyline document from 173_peptides_iRTs_chromatogram_library_2023-12-22_00-47-19.sky.zip
22 Dec 2023 01:06:36,598 INFO : Expanding iRT_10_total.irtdb
22 Dec 2023 01:06:36,599 INFO : Expanding Roman_optimierteCE_iRT.optdb
22 Dec 2023 01:06:36,600 INFO : Expanding 173_peptides_iRTs_chromatogram_library.skyd
22 Dec 2023 01:06:36,618 INFO : Expanding 173_peptides_iRTs_chromatogram_library.sky.view
22 Dec 2023 01:06:36,618 INFO : Expanding 173_peptides_iRTs_chromatogram_library.sky
22 Dec 2023 01:06:36,627 INFO : 1% Done
22 Dec 2023 01:06:36,903 INFO : Inserting sp|O15305|PMM2_HUMAN
22 Dec 2023 01:06:36,908 INFO : 2% Done
22 Dec 2023 01:06:36,927 INFO : 3% Done
22 Dec 2023 01:06:36,945 INFO : 4% Done
22 Dec 2023 01:06:36,954 INFO : Inserting sp|Q9BT22|ALG1_HUMAN
22 Dec 2023 01:06:36,958 INFO : 5% Done
22 Dec 2023 01:06:36,980 INFO : 6% Done
22 Dec 2023 01:06:36,998 INFO : 7% Done
22 Dec 2023 01:06:37,016 INFO : 8% Done
22 Dec 2023 01:06:37,025 INFO : Inserting sp|Q9H553|ALG2_HUMAN
22 Dec 2023 01:06:37,029 INFO : 9% Done
22 Dec 2023 01:06:37,055 INFO : 10% Done
22 Dec 2023 01:06:37,075 INFO : 11% Done
22 Dec 2023 01:06:37,091 INFO : 12% Done
22 Dec 2023 01:06:37,091 INFO : Inserting sp|Q92685|ALG3_HUMAN
22 Dec 2023 01:06:37,105 INFO : 13% Done
22 Dec 2023 01:06:37,123 INFO : 14% Done
22 Dec 2023 01:06:37,132 INFO : Inserting sp|Q9Y673|ALG5_HUMAN
22 Dec 2023 01:06:37,144 INFO : 15% Done
22 Dec 2023 01:06:37,152 INFO : 16% Done
22 Dec 2023 01:06:37,168 INFO : Inserting sp|Q9Y672|ALG6_HUMAN
22 Dec 2023 01:06:37,171 INFO : 17% Done
22 Dec 2023 01:06:37,195 INFO : 18% Done
22 Dec 2023 01:06:37,213 INFO : 19% Done
22 Dec 2023 01:06:37,220 INFO : Inserting sp|Q9H3H5|ALG7_HUMAN
22 Dec 2023 01:06:37,224 INFO : 20% Done
22 Dec 2023 01:06:37,238 INFO : Inserting sp|Q9BVK2|ALG8_HUMAN
22 Dec 2023 01:06:37,242 INFO : 21% Done
22 Dec 2023 01:06:37,252 INFO : 22% Done
22 Dec 2023 01:06:37,268 INFO : 23% Done
22 Dec 2023 01:06:37,277 INFO : Inserting sp|Q9H6U8|ALG9_HUMAN
22 Dec 2023 01:06:37,289 INFO : 24% Done
22 Dec 2023 01:06:37,306 INFO : 25% Done
22 Dec 2023 01:06:37,313 INFO : Inserting sp|Q5I7T1|ALG10_HUMAN
22 Dec 2023 01:06:37,340 INFO : 26% Done
22 Dec 2023 01:06:37,348 INFO : Inserting sp|Q2TAA5|ALG11_HUMAN
22 Dec 2023 01:06:37,361 INFO : 27% Done
22 Dec 2023 01:06:37,370 INFO : 28% Done
22 Dec 2023 01:06:37,388 INFO : 29% Done
22 Dec 2023 01:06:37,396 INFO : Inserting sp|Q9BV10|ALG12_HUMAN
22 Dec 2023 01:06:37,408 INFO : 30% Done
22 Dec 2023 01:06:37,424 INFO : 31% Done
22 Dec 2023 01:06:37,431 INFO : Inserting sp|Q9NP73-2|ALG13_HUMAN
22 Dec 2023 01:06:37,434 INFO : 32% Done
22 Dec 2023 01:06:37,453 INFO : 33% Done
22 Dec 2023 01:06:37,470 INFO : 34% Done
22 Dec 2023 01:06:37,478 INFO : Inserting sp|Q96F25|ALG14_HUMAN
22 Dec 2023 01:06:37,489 INFO : 35% Done
22 Dec 2023 01:06:37,497 INFO : Inserting sp|Q96AA3|RFT1_HUMAN
22 Dec 2023 01:06:37,509 INFO : 36% Done
22 Dec 2023 01:06:37,527 INFO : 37% Done
22 Dec 2023 01:06:37,536 INFO : 38% Done
22 Dec 2023 01:06:37,544 INFO : Inserting sp|P04843|RPN1_HUMAN
22 Dec 2023 01:06:37,555 INFO : 39% Done
22 Dec 2023 01:06:37,572 INFO : 40% Done
22 Dec 2023 01:06:37,590 INFO : 41% Done
22 Dec 2023 01:06:37,598 INFO : Inserting sp|O60762|DPM1_HUMAN
22 Dec 2023 01:06:37,602 INFO : 42% Done
22 Dec 2023 01:06:37,626 INFO : 43% Done
22 Dec 2023 01:06:37,642 INFO : 44% Done
22 Dec 2023 01:06:37,658 INFO : 45% Done
22 Dec 2023 01:06:37,666 INFO : Inserting sp|Q9P2X0-2|DPM3_HUMAN
22 Dec 2023 01:06:37,677 INFO : 46% Done
22 Dec 2023 01:06:37,686 INFO : 47% Done
22 Dec 2023 01:06:37,694 INFO : Inserting sp|Q9Y6A1-2|POMT1_HUMAN
22 Dec 2023 01:06:37,706 INFO : 48% Done
22 Dec 2023 01:06:37,724 INFO : 49% Done
22 Dec 2023 01:06:37,741 INFO : 50% Done
22 Dec 2023 01:06:37,750 INFO : 51% Done
22 Dec 2023 01:06:37,767 INFO : Inserting sp|Q9UKY4|POMT2_HUMAN
22 Dec 2023 01:06:37,779 INFO : 52% Done
22 Dec 2023 01:06:37,797 INFO : 53% Done
22 Dec 2023 01:06:37,814 INFO : 54% Done
22 Dec 2023 01:06:37,823 INFO : 55% Done
22 Dec 2023 01:06:37,831 INFO : Inserting sp|Q8IUR5|TMTC1_HUMAN
22 Dec 2023 01:06:37,843 INFO : 56% Done
22 Dec 2023 01:06:37,860 INFO : 57% Done
22 Dec 2023 01:06:37,878 INFO : 58% Done
22 Dec 2023 01:06:37,886 INFO : 59% Done
22 Dec 2023 01:06:37,903 INFO : 60% Done
22 Dec 2023 01:06:37,910 INFO : Inserting sp|Q8N394|TMTC2_HUMAN
22 Dec 2023 01:06:37,930 INFO : 61% Done
22 Dec 2023 01:06:37,938 INFO : 62% Done
22 Dec 2023 01:06:37,955 INFO : 63% Done
22 Dec 2023 01:06:37,973 INFO : 64% Done
22 Dec 2023 01:06:37,980 INFO : Inserting sp|Q6ZXV5|TMTC3_HUMAN
22 Dec 2023 01:06:37,991 INFO : 65% Done
22 Dec 2023 01:06:38,000 INFO : 66% Done
22 Dec 2023 01:06:38,017 INFO : 67% Done
22 Dec 2023 01:06:38,034 INFO : 68% Done
22 Dec 2023 01:06:38,042 INFO : Inserting sp|Q5T4D3|TMTC4_HUMAN
22 Dec 2023 01:06:38,061 INFO : 69% Done
22 Dec 2023 01:06:38,070 INFO : 70% Done
22 Dec 2023 01:06:38,089 INFO : 71% Done
22 Dec 2023 01:06:38,107 INFO : 72% Done
22 Dec 2023 01:06:38,126 INFO : 73% Done
22 Dec 2023 01:06:38,126 INFO : Inserting DPY19L1
22 Dec 2023 01:06:38,138 INFO : 74% Done
22 Dec 2023 01:06:38,172 INFO : 75% Done
22 Dec 2023 01:06:38,191 INFO : 76% Done
22 Dec 2023 01:06:38,199 INFO : Inserting sp|Q6ZPD9|D19L3_HUMAN
22 Dec 2023 01:06:38,211 INFO : 77% Done
22 Dec 2023 01:06:38,227 INFO : 78% Done
22 Dec 2023 01:06:38,243 INFO : 79% Done
22 Dec 2023 01:06:38,261 INFO : 80% Done
22 Dec 2023 01:06:38,269 INFO : Inserting sp|Q7Z388|D19L4_HUMAN
22 Dec 2023 01:06:38,273 INFO : 81% Done
22 Dec 2023 01:06:38,290 INFO : 82% Done
22 Dec 2023 01:06:38,305 INFO : Inserting sp|P46977|STT3A_HUMAN
22 Dec 2023 01:06:38,309 INFO : 83% Done
22 Dec 2023 01:06:38,328 INFO : 84% Done
22 Dec 2023 01:06:38,338 INFO : 85% Done
22 Dec 2023 01:06:38,366 INFO : 86% Done
22 Dec 2023 01:06:38,376 INFO : Inserting sp|Q8TCJ2|STT3B_HUMAN
22 Dec 2023 01:06:38,391 INFO : 87% Done
22 Dec 2023 01:06:38,401 INFO : 88% Done
22 Dec 2023 01:06:38,419 INFO : 89% Done
22 Dec 2023 01:06:38,437 INFO : 90% Done
22 Dec 2023 01:06:38,446 INFO : Inserting sp|Q9UGP8|SEC63_HUMAN
22 Dec 2023 01:06:38,459 INFO : 91% Done
22 Dec 2023 01:06:38,477 INFO : 92% Done
22 Dec 2023 01:06:38,487 INFO : 93% Done
22 Dec 2023 01:06:38,503 INFO : Inserting Biognosys|iRT-Kit
22 Dec 2023 01:06:38,511 INFO : 94% Done
22 Dec 2023 01:06:38,521 INFO : 95% Done
22 Dec 2023 01:06:38,531 INFO : 96% Done
22 Dec 2023 01:06:38,537 INFO : 97% Done
22 Dec 2023 01:06:38,547 INFO : 98% Done
22 Dec 2023 01:06:38,558 INFO : Done parsing Skyline document.
22 Dec 2023 01:06:38,558 INFO : Calculating iRT correlations for 6 sample(s)
22 Dec 2023 01:06:38,581 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:38,600 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:38,619 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:38,638 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:38,657 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:38,677 INFO : Calculated iRT regression line from full standard list.
22 Dec 2023 01:06:38,677 INFO : Finished calculating iRT correlations for all samples. 6 had a regression line calculated.
22 Dec 2023 01:06:38,693 INFO : Creating and populating temp tables for Proportion values
22 Dec 2023 01:06:38,854 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
22 Dec 2023 01:06:38,887 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
22 Dec 2023 01:06:38,900 INFO : Cleaning up temp tables
22 Dec 2023 01:06:39,339 INFO : Completed import of Skyline document from 173_peptides_iRTs_chromatogram_library_2023-12-22_00-47-19.sky.zip
22 Dec 2023 01:06:39,341 INFO : 100% Done
22 Dec 2023 01:06:39,357 INFO : Done importing xar
22 Dec 2023 01:06:39,359 INFO : Loading pages and webpart properties
22 Dec 2023 01:06:39,441 INFO : Done importing 4 page(s) with 7 webpart(s)
22 Dec 2023 01:06:39,441 INFO : Loading File Browser config
22 Dec 2023 01:06:39,441 INFO : Done importing File Browser config
22 Dec 2023 01:06:39,443 INFO : Starting Sample Status Data import
22 Dec 2023 01:06:39,443 INFO : No sample types XAR file to process.
22 Dec 2023 01:06:39,443 INFO : Finished importing Sample Status Data
22 Dec 2023 01:06:39,451 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
22 Dec 2023 01:06:39,454 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
22 Dec 2023 01:06:39,454 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
22 Dec 2023 01:06:39,455 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
22 Dec 2023 01:06:39,456 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
22 Dec 2023 01:06:39,456 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
22 Dec 2023 01:06:39,458 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
22 Dec 2023 01:06:39,461 INFO : Adding runs imported in subfolders.
22 Dec 2023 01:06:39,471 INFO : Moving files to folder /Panorama Public/2023/U of Heidelberg Mass Spec Core - Sakson_Beedgen_et_al_MRM/Sakson_Beedgen_et_al_Chromatogram_Library and creating symlinks
22 Dec 2023 01:06:42,987 INFO : Aligning data files urls in folder: /Panorama Public/2023/U of Heidelberg Mass Spec Core - Sakson_Beedgen_et_al_MRM/Sakson_Beedgen_et_al_Chromatogram_Library
22 Dec 2023 01:06:42,995 INFO : Done importing folder archive for Sakson_Beedgen_et_al_Chromatogram_Library
22 Dec 2023 01:06:42,995 INFO : Done importing subfolders and container tabs
22 Dec 2023 01:06:42,996 INFO : Moving files to folder /Panorama Public/2023/U of Heidelberg Mass Spec Core - Sakson_Beedgen_et_al_MRM and creating symlinks
22 Dec 2023 01:06:44,966 INFO : Aligning data files urls in folder: /Panorama Public/2023/U of Heidelberg Mass Spec Core - Sakson_Beedgen_et_al_MRM
22 Dec 2023 01:06:45,000 INFO : Importing files metadata.
22 Dec 2023 01:06:45,005 INFO :
22 Dec 2023 01:06:45,005 INFO : Experiment import completed successfully.
22 Dec 2023 01:06:45,005 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
22 Dec 2023 01:06:45,028 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
22 Dec 2023 01:06:45,028 INFO :
22 Dec 2023 01:06:45,028 INFO : Checking for library folders.
22 Dec 2023 01:06:45,031 INFO : Copying 'Peptide Library' state from source folder '/U of Heidelberg - Mass Spec Core/Sakson_Beedgen_et_al_MRM/Sakson_Beedgen_et_al_Chromatogram_Library' into target folder '/Panorama Public/2023/U of Heidelberg Mass Spec Core - Sakson_Beedgen_et_al_MRM/Sakson_Beedgen_et_al_Chromatogram_Library' .
22 Dec 2023 01:06:45,031 INFO : Setting the value of property 'chromLibRevision' to '7'.
22 Dec 2023 01:06:45,036 INFO : Exporting peptide library state in container '/U of Heidelberg - Mass Spec Core/Sakson_Beedgen_et_al_MRM/Sakson_Beedgen_et_al_Chromatogram_Library' to file '/data/labkey/files/Panorama Public/2023/U of Heidelberg Mass Spec Core - Sakson_Beedgen_et_al_MRM/Sakson_Beedgen_et_al_Chromatogram_Library/@files/targetedMSLib/chrom_lib_state_export_9237_2023-12-22_01-06-44.tsv'.
22 Dec 2023 01:06:45,038 INFO : Exporting library state of peptides in '173_peptides_iRTs_chromatogram_library_2023-12-22_00-47-19.sky.zip'.
22 Dec 2023 01:06:45,080 INFO : Done exporting library state.
22 Dec 2023 01:06:45,082 INFO : Importing peptide library state in container '/Panorama Public/2023/U of Heidelberg Mass Spec Core - Sakson_Beedgen_et_al_MRM/Sakson_Beedgen_et_al_Chromatogram_Library' from file '/data/labkey/files/Panorama Public/2023/U of Heidelberg Mass Spec Core - Sakson_Beedgen_et_al_MRM/Sakson_Beedgen_et_al_Chromatogram_Library/@files/targetedMSLib/chrom_lib_state_export_9237_2023-12-22_01-06-44.tsv'.
22 Dec 2023 01:06:45,086 INFO : Importing library state of peptides in '173_peptides_iRTs_chromatogram_library_2023-12-22_00-47-19.sky.zip'.
22 Dec 2023 01:06:45,130 INFO : Done importing library state.
22 Dec 2023 01:06:45,133 INFO : Changing chromatogram library file name from 'chromlib_9237_rev1.clib' to 'chromlib_12440_rev1.clib'.
22 Dec 2023 01:06:45,134 INFO : Changing chromatogram library file name from 'chromlib_9237_rev3.clib' to 'chromlib_12440_rev3.clib'.
22 Dec 2023 01:06:45,135 INFO : Changing chromatogram library file name from 'chromlib_9237_rev4.clib' to 'chromlib_12440_rev4.clib'.
22 Dec 2023 01:06:45,135 INFO : Changing chromatogram library file name from 'chromlib_9237_rev2.clib' to 'chromlib_12440_rev2.clib'.
22 Dec 2023 01:06:45,135 INFO : Changing chromatogram library file name from 'chromlib_9237_rev7.clib' to 'chromlib_12440_rev7.clib'.
22 Dec 2023 01:06:45,136 INFO : Changing chromatogram library file name from 'chromlib_9237_rev5.clib' to 'chromlib_12440_rev5.clib'.
22 Dec 2023 01:06:45,136 INFO : Changing chromatogram library file name from 'chromlib_9237_rev6.clib' to 'chromlib_12440_rev6.clib'.
22 Dec 2023 01:06:45,138 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
22 Dec 2023 01:06:45,157 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
22 Dec 2023 01:06:45,157 INFO :
22 Dec 2023 01:06:45,157 INFO : Finishing up experiment copy.
22 Dec 2023 01:06:45,162 INFO : Updating TargetedMS experiment entry in target folder /Panorama Public/2023/U of Heidelberg Mass Spec Core - Sakson_Beedgen_et_al_MRM
22 Dec 2023 01:06:45,163 INFO : Setting version on new experiment to 2
22 Dec 2023 01:06:45,164 INFO : Updating permanent link to point to the new copy of the data.
22 Dec 2023 01:06:45,167 INFO : Removing copy permissions given to Panorama Public
22 Dec 2023 01:06:45,170 INFO : Adding read permissions to all users that are folder admins in the source folder.
22 Dec 2023 01:06:45,171 INFO : Adding read permissions to all users that had read access to previous copy.
22 Dec 2023 01:06:45,171 INFO : Assigning ReaderRole to m.luzarowski@zmbh.uni-heidelberg.de
22 Dec 2023 01:06:45,171 INFO : Assigning ReaderRole to panorama+reviewer116@proteinms.net
22 Dec 2023 01:06:45,171 INFO : Assigning ReaderRole to n.luebbehusen@zmbh.uni-heidelberg.de
22 Dec 2023 01:06:45,171 INFO : Assigning ReaderRole to roman.sakson@gmx.net
22 Dec 2023 01:06:45,171 INFO : Assigning ReaderRole to s.merker@zmbh.uni-heidelberg.de
22 Dec 2023 01:06:45,171 INFO : Assigning PanoramaPublicSubmitterRole to roman.sakson@gmx.net
22 Dec 2023 01:06:45,176 INFO : User roman.sakson@gmx.net is already a member of group Panorama Public Submitters
22 Dec 2023 01:06:45,176 INFO : Updating the 'Raw Data' tab configuration
22 Dec 2023 01:06:45,178 INFO : Hiding the Data Pipeline tab.
22 Dec 2023 01:06:45,187 INFO : Creating a new versioned URL for the previous copy of the data: GTs-MRM_v1
22 Dec 2023 01:06:45,233 INFO : Setting the permanent link on the previous copy to GTs-MRM_v1
22 Dec 2023 01:06:45,235 INFO : Updating Submission. Setting copiedExperimentId to 1749
22 Dec 2023 01:06:48,255 INFO : Assigning a ProteomeXchange ID.
22 Dec 2023 01:06:48,706 INFO : Assigned ProteomeXchange ID: PXD048072
22 Dec 2023 01:06:48,706 INFO : Copying DOI from the previous copy of the data.
22 Dec 2023 01:06:48,706 INFO : Removing DOI from the previous copy
22 Dec 2023 01:06:48,758 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'