Copying experiment: Acoustic Ejection Mass Spectrometry Empowers Ultra-Fast Peptide Biomarker Quantification... A Paradigm shift

U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA

Job Status

Created: 2023-10-19 19:18:56
Modified: 2023-10-19 19:19:44
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Copying experiment: Acoustic Ejection Mass Spectrometry Empowers Ultra-Fast Peptide Biomarker Quantification... A Paradigm shift
File Path: /data/labkey/files/Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA/@files/Experiment_1793.log
Files: Experiment_1793.log
Completed Runs: LCMS_SARSCoV2_2023-08-14_09-08-41.sky.zip
LCMS_Inflammationpanel_2023-08-14_09-48-25.sky.zip
SARSCov2_AmBIC_2023-08-10_17-12-11.sky.zip
SARSCov2_PBS_2023-08-10_17-13-28.sky.zip
Pepcal_dilution_RedwoodCity_VFT_YIE_2023-08-14_11-18-50.sky.zip
10-plex_dilution_2023-08-10_17-44-42.sky.zip
Pepcal_dilution_RedwoodCity_IGN_LDS_2023-08-14_10-41-38.sky.zip
Pepcal_dilution_RedwoodCity_AGL_GFT_2023-08-14_10-51-11.sky.zip
Pepcal_dilution_RedwoodCity_AVY_TVE_2023-08-14_10-58-42.sky.zip
Pepcal_dilution_RedwoodCity_DGT_YDS_2023-08-14_11-07-00.sky.zip
Pepcal_dilution_RedwoodCity_SAE_VGN_2023-08-14_11-08-04.sky.zip
Pepcal_dilution_RedwoodCity_SPY_ALE_2023-08-14_11-22-32.sky.zip
Pepcal_dilution_RedwoodCity_SGG_AVG_2023-08-14_11-26-04.sky.zip
SARSCoV2_Dilution_ElutionBuffer_2023-08-10_17-31-23.sky.zip
Pepcal_dilution_RedwoodCity_GAY_LVG_2023-08-14_10-36-12.sky.zip
Pepcal_dilution_Cedars_2023-08-14_11-09-30.sky.zip
Pepcal_dilution_RedwoodCity_AET_LGL_2023-08-14_11-14-04.sky.zip
Droplet_ladder_AYNVTQAFGR_2023-08-09_15-08-02.sky.zip
Droplet_ladder_ADETQALPQR_2023-08-09_15-15-34.sky.zip
Droplet_ladder_KQQTVT_2023-08-09_15-17-55.sky.zip
i7_2023-08-23_15-06-42.sky.zip
SARSCov2_Dilution_SISCAPA_UTM_2023-08-09_16-51-39.sky.zip
NCAP_SARS2_PatientSamples_UTM_2023-08-09_17-18-11.sky.zip
SARSCov2_Reproducibility_2023-08-09_16-23-23.sky.zip
SARSCov2_NaCl_2023-08-10_17-05-12.sky.zip
SARSCov2_TRIS_2023-08-10_17-07-21.sky.zip
SARSCov2_CHAPS_2023-08-10_17-09-26.sky.zip
SARSCov2_ACN_2023-08-10_17-10-21.sky.zip
10-plex_patientcohort_2023-08-14_13-26-18.sky.zip

Log File


19 Oct 2023 19:18:56,612 INFO : Copying experiment "Acoustic Ejection Mass Spectrometry Empowers Ultra-Fast Peptide Biomarker Quantification... A Paradigm shift" from folder /U of Ghent - Pharma Biotech Lab/Echo-MS SISCAPA to /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA
19 Oct 2023 19:18:56,612 INFO : =======================================
19 Oct 2023 19:18:56,644 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
19 Oct 2023 19:18:56,644 INFO :
19 Oct 2023 19:18:56,644 INFO : Exporting experiment.
19 Oct 2023 19:19:01,785 INFO : Exporting files metadata.
19 Oct 2023 19:19:02,831 INFO :
19 Oct 2023 19:19:02,831 INFO : Experiment export completed successfully.
19 Oct 2023 19:19:02,831 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
19 Oct 2023 19:19:02,855 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
19 Oct 2023 19:19:02,855 INFO :
19 Oct 2023 19:19:02,855 INFO : Importing experiment.
19 Oct 2023 19:19:02,858 INFO : Loading folder properties (folder type, settings and active modules)
19 Oct 2023 19:19:02,921 INFO : Done importing folder properties (folder type, settings and active modules)
19 Oct 2023 19:19:02,922 INFO : Loading container specific module properties
19 Oct 2023 19:19:02,925 INFO : Done importing container specific module properties
19 Oct 2023 19:19:02,926 INFO : Loading etl definitions
19 Oct 2023 19:19:02,927 INFO : Loading wikis
19 Oct 2023 19:19:02,928 INFO : 0 wikis imported
19 Oct 2023 19:19:02,928 INFO : Done importing wikis
19 Oct 2023 19:19:02,930 INFO : Starting Data Class Importer
19 Oct 2023 19:19:02,930 INFO : No types XAR file to process.
19 Oct 2023 19:19:02,930 INFO : Finished Data Class Importer
19 Oct 2023 19:19:02,930 INFO : Starting to copy files
19 Oct 2023 19:19:02,930 INFO : Copied 0 files
19 Oct 2023 19:19:02,930 INFO : Ensuring exp.data rows exist for imported files
19 Oct 2023 19:19:03,492 INFO : Starting Sample Type Importer
19 Oct 2023 19:19:03,492 INFO : No types XAR file to process.
19 Oct 2023 19:19:03,492 INFO : Finished Sample Type Importer
19 Oct 2023 19:19:03,493 INFO : Loading xar
19 Oct 2023 19:19:03,500 INFO : Done importing xar
19 Oct 2023 19:19:03,501 INFO : Loading pages and webpart properties
19 Oct 2023 19:19:03,556 INFO : Done importing 3 page(s) with 4 webpart(s)
19 Oct 2023 19:19:03,556 INFO : Loading File Browser config
19 Oct 2023 19:19:03,556 INFO : Done importing File Browser config
19 Oct 2023 19:19:03,557 INFO : Starting Sample Status Data import
19 Oct 2023 19:19:03,557 INFO : No sample types XAR file to process.
19 Oct 2023 19:19:03,557 INFO : Finished importing Sample Status Data
19 Oct 2023 19:19:03,561 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
19 Oct 2023 19:19:03,563 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
19 Oct 2023 19:19:03,563 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
19 Oct 2023 19:19:03,564 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
19 Oct 2023 19:19:03,564 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
19 Oct 2023 19:19:03,564 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
19 Oct 2023 19:19:03,565 INFO : Loading subfolders and container tabs
19 Oct 2023 19:19:03,619 INFO : New folder created with inherited permissions: /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA/Dilution series elution buffer
19 Oct 2023 19:19:03,619 INFO : Loading folder archive for Dilution series elution buffer
19 Oct 2023 19:19:03,620 INFO : Loading folder properties (folder type, settings and active modules)
19 Oct 2023 19:19:03,677 INFO : Done importing folder properties (folder type, settings and active modules)
19 Oct 2023 19:19:03,678 INFO : Loading container specific module properties
19 Oct 2023 19:19:03,682 INFO : Done importing container specific module properties
19 Oct 2023 19:19:03,683 INFO : Loading etl definitions
19 Oct 2023 19:19:03,684 INFO : Loading wikis
19 Oct 2023 19:19:03,685 INFO : 0 wikis imported
19 Oct 2023 19:19:03,685 INFO : Done importing wikis
19 Oct 2023 19:19:03,686 INFO : Starting Data Class Importer
19 Oct 2023 19:19:03,686 INFO : No types XAR file to process.
19 Oct 2023 19:19:03,686 INFO : Finished Data Class Importer
19 Oct 2023 19:19:03,687 INFO : Starting to copy files
19 Oct 2023 19:19:03,687 INFO : Copied 0 files
19 Oct 2023 19:19:03,687 INFO : Ensuring exp.data rows exist for imported files
19 Oct 2023 19:19:03,691 INFO : Starting Sample Type Importer
19 Oct 2023 19:19:03,692 INFO : No types XAR file to process.
19 Oct 2023 19:19:03,692 INFO : Finished Sample Type Importer
19 Oct 2023 19:19:03,692 INFO : Loading xar
19 Oct 2023 19:19:03,715 INFO : Done importing xar
19 Oct 2023 19:19:03,716 INFO : Loading pages and webpart properties
19 Oct 2023 19:19:03,772 INFO : Done importing 3 page(s) with 3 webpart(s)
19 Oct 2023 19:19:03,772 INFO : Loading File Browser config
19 Oct 2023 19:19:03,772 INFO : Done importing File Browser config
19 Oct 2023 19:19:03,773 INFO : Starting Sample Status Data import
19 Oct 2023 19:19:03,773 INFO : No sample types XAR file to process.
19 Oct 2023 19:19:03,773 INFO : Finished importing Sample Status Data
19 Oct 2023 19:19:03,779 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
19 Oct 2023 19:19:03,781 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
19 Oct 2023 19:19:03,781 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
19 Oct 2023 19:19:03,782 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
19 Oct 2023 19:19:03,782 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
19 Oct 2023 19:19:03,782 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
19 Oct 2023 19:19:03,783 INFO : Loading subfolders and container tabs
19 Oct 2023 19:19:03,839 INFO : New folder created with inherited permissions: /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA/Dilution series elution buffer/10-plex
19 Oct 2023 19:19:03,839 INFO : Loading folder archive for 10-plex
19 Oct 2023 19:19:03,840 INFO : Loading folder properties (folder type, settings and active modules)
19 Oct 2023 19:19:03,897 INFO : Done importing folder properties (folder type, settings and active modules)
19 Oct 2023 19:19:03,898 INFO : Loading container specific module properties
19 Oct 2023 19:19:03,901 INFO : Done importing container specific module properties
19 Oct 2023 19:19:03,902 INFO : Loading etl definitions
19 Oct 2023 19:19:03,903 INFO : Loading wikis
19 Oct 2023 19:19:03,904 INFO : 0 wikis imported
19 Oct 2023 19:19:03,904 INFO : Done importing wikis
19 Oct 2023 19:19:03,905 INFO : Starting Data Class Importer
19 Oct 2023 19:19:03,906 INFO : No types XAR file to process.
19 Oct 2023 19:19:03,906 INFO : Finished Data Class Importer
19 Oct 2023 19:19:03,906 INFO : Starting to copy files
19 Oct 2023 19:19:03,906 INFO : Copied 0 files
19 Oct 2023 19:19:03,906 INFO : Ensuring exp.data rows exist for imported files
19 Oct 2023 19:19:03,911 INFO : Starting Sample Type Importer
19 Oct 2023 19:19:03,911 INFO : No types XAR file to process.
19 Oct 2023 19:19:03,911 INFO : Finished Sample Type Importer
19 Oct 2023 19:19:03,912 INFO : Loading xar
19 Oct 2023 19:19:03,962 INFO : Starting import from 10-plex_dilution_2023-08-10_17-44-42.sky.zip
19 Oct 2023 19:19:03,965 INFO : Starting to import Skyline document from 10-plex_dilution_2023-08-10_17-44-42.sky.zip
19 Oct 2023 19:19:03,966 INFO : Expanding 10-plex_dilution.skyd
19 Oct 2023 19:19:03,972 INFO : Expanding 10-plex_dilution.sky.view
19 Oct 2023 19:19:03,973 INFO : Expanding 10-plex_dilution.sky
19 Oct 2023 19:19:03,999 INFO : Expanding 10-plex_dilution.skyl
19 Oct 2023 19:19:04,005 INFO : 15% Done
19 Oct 2023 19:19:04,129 INFO : Inserting ALBU_HUMAN
19 Oct 2023 19:19:04,132 INFO : 31% Done
19 Oct 2023 19:19:04,138 INFO : Inserting A1AG_HUMAN
19 Oct 2023 19:19:04,140 INFO : 37% Done
19 Oct 2023 19:19:04,146 INFO : Inserting CO3_HUMAN
19 Oct 2023 19:19:04,147 INFO : 44% Done
19 Oct 2023 19:19:04,152 INFO : Inserting CRP_HUMAN
19 Oct 2023 19:19:04,154 INFO : 50% Done
19 Oct 2023 19:19:04,159 INFO : 57% Done
19 Oct 2023 19:19:04,159 INFO : Inserting HEMO_HUMAN
19 Oct 2023 19:19:04,161 INFO : 63% Done
19 Oct 2023 19:19:04,166 INFO : Inserting IGM_HUMAN
19 Oct 2023 19:19:04,167 INFO : 69% Done
19 Oct 2023 19:19:04,172 INFO : Inserting LBP_HUMAN
19 Oct 2023 19:19:04,173 INFO : 75% Done
19 Oct 2023 19:19:04,178 INFO : Inserting MBL_HUMAN
19 Oct 2023 19:19:04,179 INFO : 88% Done
19 Oct 2023 19:19:04,184 INFO : Inserting PERM_HUMAN
19 Oct 2023 19:19:04,185 INFO : 94% Done
19 Oct 2023 19:19:04,190 INFO : Inserting SAA_HUMAN
19 Oct 2023 19:19:04,191 INFO : 98% Done
19 Oct 2023 19:19:04,196 INFO : Done parsing Skyline document.
19 Oct 2023 19:19:04,221 INFO : Creating and populating temp tables for Proportion values
19 Oct 2023 19:19:04,303 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
19 Oct 2023 19:19:04,304 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
19 Oct 2023 19:19:04,305 INFO : Cleaning up temp tables
19 Oct 2023 19:19:04,583 INFO : Completed import of Skyline document from 10-plex_dilution_2023-08-10_17-44-42.sky.zip
19 Oct 2023 19:19:04,585 INFO : 100% Done
19 Oct 2023 19:19:04,594 INFO : Done importing xar
19 Oct 2023 19:19:04,595 INFO : Loading pages and webpart properties
19 Oct 2023 19:19:04,650 INFO : Done importing 3 page(s) with 4 webpart(s)
19 Oct 2023 19:19:04,651 INFO : Loading File Browser config
19 Oct 2023 19:19:04,651 INFO : Done importing File Browser config
19 Oct 2023 19:19:04,652 INFO : Starting Sample Status Data import
19 Oct 2023 19:19:04,652 INFO : No sample types XAR file to process.
19 Oct 2023 19:19:04,652 INFO : Finished importing Sample Status Data
19 Oct 2023 19:19:04,656 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
19 Oct 2023 19:19:04,659 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
19 Oct 2023 19:19:04,659 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
19 Oct 2023 19:19:04,660 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
19 Oct 2023 19:19:04,660 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
19 Oct 2023 19:19:04,660 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
19 Oct 2023 19:19:04,662 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
19 Oct 2023 19:19:04,666 INFO : Adding runs imported in subfolders.
19 Oct 2023 19:19:04,672 INFO : Moving files to folder /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA/Dilution series elution buffer/10-plex and creating symlinks
19 Oct 2023 19:19:06,153 INFO : Aligning data files urls in folder: /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA/Dilution series elution buffer/10-plex
19 Oct 2023 19:19:06,160 INFO : Done importing folder archive for 10-plex
19 Oct 2023 19:19:06,221 INFO : New folder created with inherited permissions: /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA/Dilution series elution buffer/NCAP_SARS2
19 Oct 2023 19:19:06,221 INFO : Loading folder archive for NCAP_SARS2
19 Oct 2023 19:19:06,223 INFO : Loading folder properties (folder type, settings and active modules)
19 Oct 2023 19:19:06,288 INFO : Done importing folder properties (folder type, settings and active modules)
19 Oct 2023 19:19:06,290 INFO : Loading container specific module properties
19 Oct 2023 19:19:06,293 INFO : Done importing container specific module properties
19 Oct 2023 19:19:06,294 INFO : Loading etl definitions
19 Oct 2023 19:19:06,295 INFO : Loading wikis
19 Oct 2023 19:19:06,296 INFO : 0 wikis imported
19 Oct 2023 19:19:06,296 INFO : Done importing wikis
19 Oct 2023 19:19:06,298 INFO : Starting Data Class Importer
19 Oct 2023 19:19:06,298 INFO : No types XAR file to process.
19 Oct 2023 19:19:06,299 INFO : Finished Data Class Importer
19 Oct 2023 19:19:06,300 INFO : Starting to copy files
19 Oct 2023 19:19:06,301 INFO : Copied 0 files
19 Oct 2023 19:19:06,301 INFO : Ensuring exp.data rows exist for imported files
19 Oct 2023 19:19:06,305 INFO : Starting Sample Type Importer
19 Oct 2023 19:19:06,305 INFO : No types XAR file to process.
19 Oct 2023 19:19:06,305 INFO : Finished Sample Type Importer
19 Oct 2023 19:19:06,306 INFO : Loading xar
19 Oct 2023 19:19:06,349 INFO : Starting import from SARSCoV2_Dilution_ElutionBuffer_2023-08-10_17-31-23.sky.zip
19 Oct 2023 19:19:06,352 INFO : Starting to import Skyline document from SARSCoV2_Dilution_ElutionBuffer_2023-08-10_17-31-23.sky.zip
19 Oct 2023 19:19:06,354 INFO : Expanding SARSCoV2_Dilution_ElutionBuffer.skyd
19 Oct 2023 19:19:06,357 INFO : Expanding SARSCoV2_Dilution_ElutionBuffer.sky.view
19 Oct 2023 19:19:06,358 INFO : Expanding SARSCoV2_Dilution_ElutionBuffer.sky
19 Oct 2023 19:19:06,360 INFO : Expanding SARSCoV2_Dilution_ElutionBuffer.skyl
19 Oct 2023 19:19:06,366 INFO : 32% Done
19 Oct 2023 19:19:06,486 INFO : Inserting NCAP_SARS2
19 Oct 2023 19:19:06,488 INFO : 59% Done
19 Oct 2023 19:19:06,496 INFO : 78% Done
19 Oct 2023 19:19:06,502 INFO : 98% Done
19 Oct 2023 19:19:06,508 INFO : Done parsing Skyline document.
19 Oct 2023 19:19:06,527 INFO : Creating and populating temp tables for Proportion values
19 Oct 2023 19:19:06,610 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
19 Oct 2023 19:19:06,611 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
19 Oct 2023 19:19:06,611 INFO : Cleaning up temp tables
19 Oct 2023 19:19:06,863 INFO : Completed import of Skyline document from SARSCoV2_Dilution_ElutionBuffer_2023-08-10_17-31-23.sky.zip
19 Oct 2023 19:19:06,865 INFO : 100% Done
19 Oct 2023 19:19:06,876 INFO : Done importing xar
19 Oct 2023 19:19:06,877 INFO : Loading pages and webpart properties
19 Oct 2023 19:19:06,933 INFO : Done importing 3 page(s) with 4 webpart(s)
19 Oct 2023 19:19:06,933 INFO : Loading File Browser config
19 Oct 2023 19:19:06,933 INFO : Done importing File Browser config
19 Oct 2023 19:19:06,934 INFO : Starting Sample Status Data import
19 Oct 2023 19:19:06,934 INFO : No sample types XAR file to process.
19 Oct 2023 19:19:06,934 INFO : Finished importing Sample Status Data
19 Oct 2023 19:19:06,938 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
19 Oct 2023 19:19:06,940 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
19 Oct 2023 19:19:06,941 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
19 Oct 2023 19:19:06,941 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
19 Oct 2023 19:19:06,941 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
19 Oct 2023 19:19:06,941 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
19 Oct 2023 19:19:06,942 INFO : Moving files to folder /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA/Dilution series elution buffer/NCAP_SARS2 and creating symlinks
19 Oct 2023 19:19:07,074 INFO : Aligning data files urls in folder: /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA/Dilution series elution buffer/NCAP_SARS2
19 Oct 2023 19:19:07,080 INFO : Done importing folder archive for NCAP_SARS2
19 Oct 2023 19:19:07,134 INFO : New folder created with inherited permissions: /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA/Dilution series elution buffer/PepCal
19 Oct 2023 19:19:07,134 INFO : Loading folder archive for PepCal
19 Oct 2023 19:19:07,135 INFO : Loading folder properties (folder type, settings and active modules)
19 Oct 2023 19:19:07,191 INFO : Done importing folder properties (folder type, settings and active modules)
19 Oct 2023 19:19:07,192 INFO : Loading container specific module properties
19 Oct 2023 19:19:07,196 INFO : Done importing container specific module properties
19 Oct 2023 19:19:07,197 INFO : Loading etl definitions
19 Oct 2023 19:19:07,198 INFO : Loading wikis
19 Oct 2023 19:19:07,200 INFO : 0 wikis imported
19 Oct 2023 19:19:07,200 INFO : Done importing wikis
19 Oct 2023 19:19:07,201 INFO : Starting Data Class Importer
19 Oct 2023 19:19:07,201 INFO : No types XAR file to process.
19 Oct 2023 19:19:07,201 INFO : Finished Data Class Importer
19 Oct 2023 19:19:07,202 INFO : Starting to copy files
19 Oct 2023 19:19:07,202 INFO : Copied 0 files
19 Oct 2023 19:19:07,202 INFO : Ensuring exp.data rows exist for imported files
19 Oct 2023 19:19:07,207 INFO : Starting Sample Type Importer
19 Oct 2023 19:19:07,207 INFO : No types XAR file to process.
19 Oct 2023 19:19:07,207 INFO : Finished Sample Type Importer
19 Oct 2023 19:19:07,208 INFO : Loading xar
19 Oct 2023 19:19:08,987 INFO : Starting import from Pepcal_dilution_RedwoodCity_GAY_LVG_2023-08-14_10-36-12.sky.zip
19 Oct 2023 19:19:08,991 INFO : Starting to import Skyline document from Pepcal_dilution_RedwoodCity_GAY_LVG_2023-08-14_10-36-12.sky.zip
19 Oct 2023 19:19:08,991 INFO : Expanding Pepcal_dilution_RedwoodCity_GAY_LVG.skyd
19 Oct 2023 19:19:08,994 INFO : Expanding Pepcal_dilution_RedwoodCity_GAY_LVG.sky.view
19 Oct 2023 19:19:08,995 INFO : Expanding Pepcal_dilution_RedwoodCity_GAY_LVG.sky
19 Oct 2023 19:19:08,997 INFO : Expanding Pepcal_dilution_RedwoodCity_GAY_LVG.skyl
19 Oct 2023 19:19:09,008 INFO : 23% Done
19 Oct 2023 19:19:09,256 INFO : Inserting PEPCAL
19 Oct 2023 19:19:09,264 INFO : 63% Done
19 Oct 2023 19:19:09,339 INFO : 98% Done
19 Oct 2023 19:19:09,407 INFO : Done parsing Skyline document.
19 Oct 2023 19:19:09,461 INFO : Creating and populating temp tables for Proportion values
19 Oct 2023 19:19:09,564 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
19 Oct 2023 19:19:09,575 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
19 Oct 2023 19:19:09,583 INFO : Cleaning up temp tables
19 Oct 2023 19:19:09,847 INFO : Completed import of Skyline document from Pepcal_dilution_RedwoodCity_GAY_LVG_2023-08-14_10-36-12.sky.zip
19 Oct 2023 19:19:09,849 INFO : 100% Done
19 Oct 2023 19:19:09,859 INFO : Starting import from Pepcal_dilution_RedwoodCity_IGN_LDS_2023-08-14_10-41-38.sky.zip
19 Oct 2023 19:19:09,861 INFO : Starting to import Skyline document from Pepcal_dilution_RedwoodCity_IGN_LDS_2023-08-14_10-41-38.sky.zip
19 Oct 2023 19:19:09,862 INFO : Expanding Pepcal_dilution_RedwoodCity_IGN_LDS.skyd
19 Oct 2023 19:19:09,867 INFO : Expanding Pepcal_dilution_RedwoodCity_IGN_LDS.sky.view
19 Oct 2023 19:19:09,868 INFO : Expanding Pepcal_dilution_RedwoodCity_IGN_LDS.sky
19 Oct 2023 19:19:09,871 INFO : Expanding Pepcal_dilution_RedwoodCity_IGN_LDS.skyl
19 Oct 2023 19:19:09,882 INFO : 23% Done
19 Oct 2023 19:19:10,126 INFO : Inserting PEPCAL
19 Oct 2023 19:19:10,135 INFO : 63% Done
19 Oct 2023 19:19:10,207 INFO : 98% Done
19 Oct 2023 19:19:10,272 INFO : Done parsing Skyline document.
19 Oct 2023 19:19:10,326 INFO : Creating and populating temp tables for Proportion values
19 Oct 2023 19:19:10,406 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
19 Oct 2023 19:19:10,417 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
19 Oct 2023 19:19:10,425 INFO : Cleaning up temp tables
19 Oct 2023 19:19:10,694 INFO : Completed import of Skyline document from Pepcal_dilution_RedwoodCity_IGN_LDS_2023-08-14_10-41-38.sky.zip
19 Oct 2023 19:19:10,696 INFO : 100% Done
19 Oct 2023 19:19:10,703 INFO : Starting import from Pepcal_dilution_RedwoodCity_AGL_GFT_2023-08-14_10-51-11.sky.zip
19 Oct 2023 19:19:10,704 INFO : Starting to import Skyline document from Pepcal_dilution_RedwoodCity_AGL_GFT_2023-08-14_10-51-11.sky.zip
19 Oct 2023 19:19:10,705 INFO : Expanding Pepcal_dilution_RedwoodCity_AGL_GFT.skyd
19 Oct 2023 19:19:10,708 INFO : Expanding Pepcal_dilution_RedwoodCity_AGL_GFT.sky.view
19 Oct 2023 19:19:10,708 INFO : Expanding Pepcal_dilution_RedwoodCity_AGL_GFT.sky
19 Oct 2023 19:19:10,711 INFO : Expanding Pepcal_dilution_RedwoodCity_AGL_GFT.skyl
19 Oct 2023 19:19:10,719 INFO : 21% Done
19 Oct 2023 19:19:10,948 INFO : Inserting PEPCAL
19 Oct 2023 19:19:10,956 INFO : 68% Done
19 Oct 2023 19:19:11,038 INFO : 98% Done
19 Oct 2023 19:19:11,102 INFO : Done parsing Skyline document.
19 Oct 2023 19:19:11,152 INFO : Creating and populating temp tables for Proportion values
19 Oct 2023 19:19:11,231 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
19 Oct 2023 19:19:11,242 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
19 Oct 2023 19:19:11,250 INFO : Cleaning up temp tables
19 Oct 2023 19:19:11,506 INFO : Completed import of Skyline document from Pepcal_dilution_RedwoodCity_AGL_GFT_2023-08-14_10-51-11.sky.zip
19 Oct 2023 19:19:11,507 INFO : 100% Done
19 Oct 2023 19:19:11,514 INFO : Starting import from Pepcal_dilution_RedwoodCity_AVY_TVE_2023-08-14_10-58-42.sky.zip
19 Oct 2023 19:19:11,516 INFO : Starting to import Skyline document from Pepcal_dilution_RedwoodCity_AVY_TVE_2023-08-14_10-58-42.sky.zip
19 Oct 2023 19:19:11,518 INFO : Expanding Pepcal_dilution_RedwoodCity_AVY_TVE.skyd
19 Oct 2023 19:19:11,520 INFO : Expanding Pepcal_dilution_RedwoodCity_AVY_TVE.sky.view
19 Oct 2023 19:19:11,521 INFO : Expanding Pepcal_dilution_RedwoodCity_AVY_TVE.sky
19 Oct 2023 19:19:11,523 INFO : Expanding Pepcal_dilution_RedwoodCity_AVY_TVE.skyl
19 Oct 2023 19:19:11,530 INFO : 23% Done
19 Oct 2023 19:19:11,760 INFO : Inserting PEPCAL
19 Oct 2023 19:19:11,767 INFO : 64% Done
19 Oct 2023 19:19:11,837 INFO : 98% Done
19 Oct 2023 19:19:11,899 INFO : Done parsing Skyline document.
19 Oct 2023 19:19:11,937 INFO : Creating and populating temp tables for Proportion values
19 Oct 2023 19:19:12,016 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
19 Oct 2023 19:19:12,027 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
19 Oct 2023 19:19:12,035 INFO : Cleaning up temp tables
19 Oct 2023 19:19:12,284 INFO : Completed import of Skyline document from Pepcal_dilution_RedwoodCity_AVY_TVE_2023-08-14_10-58-42.sky.zip
19 Oct 2023 19:19:12,286 INFO : 100% Done
19 Oct 2023 19:19:12,293 INFO : Starting import from Pepcal_dilution_RedwoodCity_DGT_YDS_2023-08-14_11-07-00.sky.zip
19 Oct 2023 19:19:12,295 INFO : Starting to import Skyline document from Pepcal_dilution_RedwoodCity_DGT_YDS_2023-08-14_11-07-00.sky.zip
19 Oct 2023 19:19:12,295 INFO : Expanding Pepcal_dilution_RedwoodCity_DGT_YDS.skyd
19 Oct 2023 19:19:12,298 INFO : Expanding Pepcal_dilution_RedwoodCity_DGT_YDS.sky.view
19 Oct 2023 19:19:12,299 INFO : Expanding Pepcal_dilution_RedwoodCity_DGT_YDS.sky
19 Oct 2023 19:19:12,301 INFO : Expanding Pepcal_dilution_RedwoodCity_DGT_YDS.skyl
19 Oct 2023 19:19:12,308 INFO : 23% Done
19 Oct 2023 19:19:12,546 INFO : Inserting PEPCAL
19 Oct 2023 19:19:12,552 INFO : 64% Done
19 Oct 2023 19:19:12,622 INFO : 98% Done
19 Oct 2023 19:19:12,687 INFO : Done parsing Skyline document.
19 Oct 2023 19:19:12,722 INFO : Creating and populating temp tables for Proportion values
19 Oct 2023 19:19:12,809 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
19 Oct 2023 19:19:12,820 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
19 Oct 2023 19:19:12,828 INFO : Cleaning up temp tables
19 Oct 2023 19:19:13,090 INFO : Completed import of Skyline document from Pepcal_dilution_RedwoodCity_DGT_YDS_2023-08-14_11-07-00.sky.zip
19 Oct 2023 19:19:13,092 INFO : 100% Done
19 Oct 2023 19:19:13,099 INFO : Starting import from Pepcal_dilution_RedwoodCity_SAE_VGN_2023-08-14_11-08-04.sky.zip
19 Oct 2023 19:19:13,101 INFO : Starting to import Skyline document from Pepcal_dilution_RedwoodCity_SAE_VGN_2023-08-14_11-08-04.sky.zip
19 Oct 2023 19:19:13,102 INFO : Expanding Pepcal_dilution_RedwoodCity_SAE_VGN.skyd
19 Oct 2023 19:19:13,105 INFO : Expanding Pepcal_dilution_RedwoodCity_SAE_VGN.sky.view
19 Oct 2023 19:19:13,105 INFO : Expanding Pepcal_dilution_RedwoodCity_SAE_VGN.sky
19 Oct 2023 19:19:13,107 INFO : Expanding Pepcal_dilution_RedwoodCity_SAE_VGN.skyl
19 Oct 2023 19:19:13,114 INFO : 23% Done
19 Oct 2023 19:19:13,360 INFO : Inserting PEPCAL
19 Oct 2023 19:19:13,367 INFO : 63% Done
19 Oct 2023 19:19:13,436 INFO : 98% Done
19 Oct 2023 19:19:13,499 INFO : Done parsing Skyline document.
19 Oct 2023 19:19:13,538 INFO : Creating and populating temp tables for Proportion values
19 Oct 2023 19:19:13,623 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
19 Oct 2023 19:19:13,634 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
19 Oct 2023 19:19:13,642 INFO : Cleaning up temp tables
19 Oct 2023 19:19:13,889 INFO : Completed import of Skyline document from Pepcal_dilution_RedwoodCity_SAE_VGN_2023-08-14_11-08-04.sky.zip
19 Oct 2023 19:19:13,890 INFO : 100% Done
19 Oct 2023 19:19:13,897 INFO : Starting import from Pepcal_dilution_Cedars_2023-08-14_11-09-30.sky.zip
19 Oct 2023 19:19:13,899 INFO : Starting to import Skyline document from Pepcal_dilution_Cedars_2023-08-14_11-09-30.sky.zip
19 Oct 2023 19:19:13,900 INFO : Expanding Pepcal_dilution_Cedars.skyd
19 Oct 2023 19:19:13,905 INFO : Expanding Pepcal_dilution_Cedars.sky.view
19 Oct 2023 19:19:13,906 INFO : Expanding Pepcal_dilution_Cedars.sky
19 Oct 2023 19:19:13,907 INFO : Expanding Pepcal_dilution_Cedars.skyl
19 Oct 2023 19:19:13,912 INFO : 14% Done
19 Oct 2023 19:19:14,031 INFO : Inserting PEPCAL
19 Oct 2023 19:19:14,033 INFO : 24% Done
19 Oct 2023 19:19:14,037 INFO : 29% Done
19 Oct 2023 19:19:14,043 INFO : 36% Done
19 Oct 2023 19:19:14,046 INFO : 42% Done
19 Oct 2023 19:19:14,052 INFO : 48% Done
19 Oct 2023 19:19:14,055 INFO : 54% Done
19 Oct 2023 19:19:14,060 INFO : 60% Done
19 Oct 2023 19:19:14,063 INFO : 66% Done
19 Oct 2023 19:19:14,068 INFO : 72% Done
19 Oct 2023 19:19:14,071 INFO : 77% Done
19 Oct 2023 19:19:14,074 INFO : 83% Done
19 Oct 2023 19:19:14,079 INFO : 89% Done
19 Oct 2023 19:19:14,082 INFO : 96% Done
19 Oct 2023 19:19:14,087 INFO : 98% Done
19 Oct 2023 19:19:14,090 INFO : Done parsing Skyline document.
19 Oct 2023 19:19:14,124 INFO : Creating and populating temp tables for Proportion values
19 Oct 2023 19:19:14,203 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
19 Oct 2023 19:19:14,205 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
19 Oct 2023 19:19:14,206 INFO : Cleaning up temp tables
19 Oct 2023 19:19:14,453 INFO : Completed import of Skyline document from Pepcal_dilution_Cedars_2023-08-14_11-09-30.sky.zip
19 Oct 2023 19:19:14,454 INFO : 100% Done
19 Oct 2023 19:19:14,461 INFO : Starting import from Pepcal_dilution_RedwoodCity_AET_LGL_2023-08-14_11-14-04.sky.zip
19 Oct 2023 19:19:14,463 INFO : Starting to import Skyline document from Pepcal_dilution_RedwoodCity_AET_LGL_2023-08-14_11-14-04.sky.zip
19 Oct 2023 19:19:14,464 INFO : Expanding Pepcal_dilution_RedwoodCity_AET_LGL.skyd
19 Oct 2023 19:19:14,466 INFO : Expanding Pepcal_dilution_RedwoodCity_AET_LGL.sky.view
19 Oct 2023 19:19:14,467 INFO : Expanding Pepcal_dilution_RedwoodCity_AET_LGL.sky
19 Oct 2023 19:19:14,469 INFO : Expanding Pepcal_dilution_RedwoodCity_AET_LGL.skyl
19 Oct 2023 19:19:14,475 INFO : 23% Done
19 Oct 2023 19:19:14,724 INFO : Inserting PEPCAL
19 Oct 2023 19:19:14,731 INFO : 63% Done
19 Oct 2023 19:19:14,802 INFO : 98% Done
19 Oct 2023 19:19:14,864 INFO : Done parsing Skyline document.
19 Oct 2023 19:19:14,900 INFO : Creating and populating temp tables for Proportion values
19 Oct 2023 19:19:14,984 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
19 Oct 2023 19:19:14,996 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
19 Oct 2023 19:19:15,003 INFO : Cleaning up temp tables
19 Oct 2023 19:19:15,248 INFO : Completed import of Skyline document from Pepcal_dilution_RedwoodCity_AET_LGL_2023-08-14_11-14-04.sky.zip
19 Oct 2023 19:19:15,250 INFO : 100% Done
19 Oct 2023 19:19:15,257 INFO : Starting import from Pepcal_dilution_RedwoodCity_VFT_YIE_2023-08-14_11-18-50.sky.zip
19 Oct 2023 19:19:15,259 INFO : Starting to import Skyline document from Pepcal_dilution_RedwoodCity_VFT_YIE_2023-08-14_11-18-50.sky.zip
19 Oct 2023 19:19:15,261 INFO : Expanding Pepcal_dilution_RedwoodCity_VFT_YIE.skyd
19 Oct 2023 19:19:15,312 INFO : Expanding Pepcal_dilution_RedwoodCity_VFT_YIE.sky.view
19 Oct 2023 19:19:15,313 INFO : Expanding Pepcal_dilution_RedwoodCity_VFT_YIE.sky
19 Oct 2023 19:19:15,315 INFO : Expanding Pepcal_dilution_RedwoodCity_VFT_YIE.skyl
19 Oct 2023 19:19:15,337 INFO : 23% Done
19 Oct 2023 19:19:15,592 INFO : Inserting PEPCAL
19 Oct 2023 19:19:15,599 INFO : 63% Done
19 Oct 2023 19:19:15,669 INFO : 98% Done
19 Oct 2023 19:19:15,732 INFO : Done parsing Skyline document.
19 Oct 2023 19:19:15,767 INFO : Creating and populating temp tables for Proportion values
19 Oct 2023 19:19:15,851 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
19 Oct 2023 19:19:15,862 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
19 Oct 2023 19:19:15,870 INFO : Cleaning up temp tables
19 Oct 2023 19:19:16,117 INFO : Completed import of Skyline document from Pepcal_dilution_RedwoodCity_VFT_YIE_2023-08-14_11-18-50.sky.zip
19 Oct 2023 19:19:16,119 INFO : 100% Done
19 Oct 2023 19:19:16,126 INFO : Starting import from Pepcal_dilution_RedwoodCity_SPY_ALE_2023-08-14_11-22-32.sky.zip
19 Oct 2023 19:19:16,127 INFO : Starting to import Skyline document from Pepcal_dilution_RedwoodCity_SPY_ALE_2023-08-14_11-22-32.sky.zip
19 Oct 2023 19:19:16,128 INFO : Expanding Pepcal_dilution_RedwoodCity_SPY_ALE.skyd
19 Oct 2023 19:19:16,131 INFO : Expanding Pepcal_dilution_RedwoodCity_SPY_ALE.sky.view
19 Oct 2023 19:19:16,131 INFO : Expanding Pepcal_dilution_RedwoodCity_SPY_ALE.sky
19 Oct 2023 19:19:16,134 INFO : Expanding Pepcal_dilution_RedwoodCity_SPY_ALE.skyl
19 Oct 2023 19:19:16,140 INFO : 21% Done
19 Oct 2023 19:19:16,399 INFO : Inserting PEPCAL
19 Oct 2023 19:19:16,406 INFO : 57% Done
19 Oct 2023 19:19:16,476 INFO : 98% Done
19 Oct 2023 19:19:16,551 INFO : Done parsing Skyline document.
19 Oct 2023 19:19:16,587 INFO : Creating and populating temp tables for Proportion values
19 Oct 2023 19:19:16,671 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
19 Oct 2023 19:19:16,682 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
19 Oct 2023 19:19:16,689 INFO : Cleaning up temp tables
19 Oct 2023 19:19:16,957 INFO : Completed import of Skyline document from Pepcal_dilution_RedwoodCity_SPY_ALE_2023-08-14_11-22-32.sky.zip
19 Oct 2023 19:19:16,959 INFO : 100% Done
19 Oct 2023 19:19:16,966 INFO : Starting import from Pepcal_dilution_RedwoodCity_SGG_AVG_2023-08-14_11-26-04.sky.zip
19 Oct 2023 19:19:16,968 INFO : Starting to import Skyline document from Pepcal_dilution_RedwoodCity_SGG_AVG_2023-08-14_11-26-04.sky.zip
19 Oct 2023 19:19:16,969 INFO : Expanding Pepcal_dilution_RedwoodCity_SGG_AVG.skyd
19 Oct 2023 19:19:16,972 INFO : Expanding Pepcal_dilution_RedwoodCity_SGG_AVG.sky.view
19 Oct 2023 19:19:16,972 INFO : Expanding Pepcal_dilution_RedwoodCity_SGG_AVG.sky
19 Oct 2023 19:19:16,974 INFO : Expanding Pepcal_dilution_RedwoodCity_SGG_AVG.skyl
19 Oct 2023 19:19:16,981 INFO : 23% Done
19 Oct 2023 19:19:17,247 INFO : Inserting PEPCAL
19 Oct 2023 19:19:17,253 INFO : 64% Done
19 Oct 2023 19:19:17,322 INFO : 98% Done
19 Oct 2023 19:19:17,385 INFO : Done parsing Skyline document.
19 Oct 2023 19:19:17,421 INFO : Creating and populating temp tables for Proportion values
19 Oct 2023 19:19:17,507 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
19 Oct 2023 19:19:17,518 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
19 Oct 2023 19:19:17,526 INFO : Cleaning up temp tables
19 Oct 2023 19:19:17,778 INFO : Completed import of Skyline document from Pepcal_dilution_RedwoodCity_SGG_AVG_2023-08-14_11-26-04.sky.zip
19 Oct 2023 19:19:17,782 INFO : 100% Done
19 Oct 2023 19:19:17,824 INFO : Done importing xar
19 Oct 2023 19:19:17,825 INFO : Loading pages and webpart properties
19 Oct 2023 19:19:17,879 INFO : Done importing 3 page(s) with 4 webpart(s)
19 Oct 2023 19:19:17,880 INFO : Loading File Browser config
19 Oct 2023 19:19:17,880 INFO : Done importing File Browser config
19 Oct 2023 19:19:17,881 INFO : Starting Sample Status Data import
19 Oct 2023 19:19:17,881 INFO : No sample types XAR file to process.
19 Oct 2023 19:19:17,881 INFO : Finished importing Sample Status Data
19 Oct 2023 19:19:17,885 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
19 Oct 2023 19:19:17,887 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
19 Oct 2023 19:19:17,888 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
19 Oct 2023 19:19:17,888 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
19 Oct 2023 19:19:17,889 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
19 Oct 2023 19:19:17,889 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
19 Oct 2023 19:19:17,889 INFO : Moving files to folder /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA/Dilution series elution buffer/PepCal and creating symlinks
19 Oct 2023 19:19:18,329 INFO : Aligning data files urls in folder: /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA/Dilution series elution buffer/PepCal
19 Oct 2023 19:19:18,390 INFO : Done importing folder archive for PepCal
19 Oct 2023 19:19:18,390 INFO : Done importing subfolders and container tabs
19 Oct 2023 19:19:18,391 INFO : Moving files to folder /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA/Dilution series elution buffer and creating symlinks
19 Oct 2023 19:19:18,396 INFO : Aligning data files urls in folder: /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA/Dilution series elution buffer
19 Oct 2023 19:19:18,396 INFO : Done importing folder archive for Dilution series elution buffer
19 Oct 2023 19:19:18,448 INFO : New folder created with inherited permissions: /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA/Droplet Ladders
19 Oct 2023 19:19:18,448 INFO : Loading folder archive for Droplet Ladders
19 Oct 2023 19:19:18,450 INFO : Loading folder properties (folder type, settings and active modules)
19 Oct 2023 19:19:18,508 INFO : Done importing folder properties (folder type, settings and active modules)
19 Oct 2023 19:19:18,509 INFO : Loading container specific module properties
19 Oct 2023 19:19:18,513 INFO : Done importing container specific module properties
19 Oct 2023 19:19:18,514 INFO : Loading etl definitions
19 Oct 2023 19:19:18,515 INFO : Loading wikis
19 Oct 2023 19:19:18,516 INFO : 0 wikis imported
19 Oct 2023 19:19:18,516 INFO : Done importing wikis
19 Oct 2023 19:19:18,517 INFO : Starting Data Class Importer
19 Oct 2023 19:19:18,517 INFO : No types XAR file to process.
19 Oct 2023 19:19:18,517 INFO : Finished Data Class Importer
19 Oct 2023 19:19:18,518 INFO : Starting to copy files
19 Oct 2023 19:19:18,518 INFO : Copied 0 files
19 Oct 2023 19:19:18,518 INFO : Ensuring exp.data rows exist for imported files
19 Oct 2023 19:19:18,524 INFO : Starting Sample Type Importer
19 Oct 2023 19:19:18,524 INFO : No types XAR file to process.
19 Oct 2023 19:19:18,524 INFO : Finished Sample Type Importer
19 Oct 2023 19:19:18,525 INFO : Loading xar
19 Oct 2023 19:19:18,597 INFO : Starting import from Droplet_ladder_AYNVTQAFGR_2023-08-09_15-08-02.sky.zip
19 Oct 2023 19:19:18,600 INFO : Starting to import Skyline document from Droplet_ladder_AYNVTQAFGR_2023-08-09_15-08-02.sky.zip
19 Oct 2023 19:19:18,600 INFO : Expanding Droplet_ladder_AYNVTQAFGR.skyd
19 Oct 2023 19:19:18,602 INFO : Expanding Droplet_ladder_AYNVTQAFGR.sky.view
19 Oct 2023 19:19:18,602 INFO : Expanding Droplet_ladder_AYNVTQAFGR.sky
19 Oct 2023 19:19:18,603 INFO : Expanding Droplet_ladder_AYNVTQAFGR.skyl
19 Oct 2023 19:19:18,608 INFO : 53% Done
19 Oct 2023 19:19:18,730 INFO : Inserting NCAP_SARS2
19 Oct 2023 19:19:18,732 INFO : 98% Done
19 Oct 2023 19:19:18,736 INFO : Done parsing Skyline document.
19 Oct 2023 19:19:18,752 INFO : Creating and populating temp tables for Proportion values
19 Oct 2023 19:19:18,843 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
19 Oct 2023 19:19:18,843 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
19 Oct 2023 19:19:18,844 INFO : Cleaning up temp tables
19 Oct 2023 19:19:19,111 INFO : Completed import of Skyline document from Droplet_ladder_AYNVTQAFGR_2023-08-09_15-08-02.sky.zip
19 Oct 2023 19:19:19,113 INFO : 100% Done
19 Oct 2023 19:19:19,119 INFO : Starting import from Droplet_ladder_ADETQALPQR_2023-08-09_15-15-34.sky.zip
19 Oct 2023 19:19:19,121 INFO : Starting to import Skyline document from Droplet_ladder_ADETQALPQR_2023-08-09_15-15-34.sky.zip
19 Oct 2023 19:19:19,122 INFO : Expanding Droplet_ladder_ADETQALPQR.skyd
19 Oct 2023 19:19:19,124 INFO : Expanding Droplet_ladder_ADETQALPQR.sky.view
19 Oct 2023 19:19:19,125 INFO : Expanding Droplet_ladder_ADETQALPQR.sky
19 Oct 2023 19:19:19,125 INFO : Expanding Droplet_ladder_ADETQALPQR.skyl
19 Oct 2023 19:19:19,130 INFO : 80% Done
19 Oct 2023 19:19:19,237 INFO : Inserting NCAP_SARS2
19 Oct 2023 19:19:19,242 INFO : Done parsing Skyline document.
19 Oct 2023 19:19:19,257 INFO : Creating and populating temp tables for Proportion values
19 Oct 2023 19:19:19,338 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
19 Oct 2023 19:19:19,339 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
19 Oct 2023 19:19:19,339 INFO : Cleaning up temp tables
19 Oct 2023 19:19:19,586 INFO : Completed import of Skyline document from Droplet_ladder_ADETQALPQR_2023-08-09_15-15-34.sky.zip
19 Oct 2023 19:19:19,587 INFO : 100% Done
19 Oct 2023 19:19:19,594 INFO : Starting import from Droplet_ladder_KQQTVT_2023-08-09_15-17-55.sky.zip
19 Oct 2023 19:19:19,596 INFO : Starting to import Skyline document from Droplet_ladder_KQQTVT_2023-08-09_15-17-55.sky.zip
19 Oct 2023 19:19:19,596 INFO : Expanding Droplet_ladder_KQQTVT.skyd
19 Oct 2023 19:19:19,598 INFO : Expanding Droplet_ladder_KQQTVT.sky.view
19 Oct 2023 19:19:19,598 INFO : Expanding Droplet_ladder_KQQTVT.sky
19 Oct 2023 19:19:19,599 INFO : Expanding Droplet_ladder_KQQTVT.skyl
19 Oct 2023 19:19:19,603 INFO : 52% Done
19 Oct 2023 19:19:19,710 INFO : Inserting NCAP_SARS2
19 Oct 2023 19:19:19,712 INFO : 98% Done
19 Oct 2023 19:19:19,715 INFO : Done parsing Skyline document.
19 Oct 2023 19:19:19,731 INFO : Creating and populating temp tables for Proportion values
19 Oct 2023 19:19:19,813 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
19 Oct 2023 19:19:19,813 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
19 Oct 2023 19:19:19,814 INFO : Cleaning up temp tables
19 Oct 2023 19:19:20,073 INFO : Completed import of Skyline document from Droplet_ladder_KQQTVT_2023-08-09_15-17-55.sky.zip
19 Oct 2023 19:19:20,074 INFO : 100% Done
19 Oct 2023 19:19:20,092 INFO : Done importing xar
19 Oct 2023 19:19:20,094 INFO : Loading pages and webpart properties
19 Oct 2023 19:19:20,153 INFO : Done importing 3 page(s) with 4 webpart(s)
19 Oct 2023 19:19:20,153 INFO : Loading File Browser config
19 Oct 2023 19:19:20,153 INFO : Done importing File Browser config
19 Oct 2023 19:19:20,155 INFO : Starting Sample Status Data import
19 Oct 2023 19:19:20,155 INFO : No sample types XAR file to process.
19 Oct 2023 19:19:20,155 INFO : Finished importing Sample Status Data
19 Oct 2023 19:19:20,160 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
19 Oct 2023 19:19:20,162 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
19 Oct 2023 19:19:20,163 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
19 Oct 2023 19:19:20,163 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
19 Oct 2023 19:19:20,164 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
19 Oct 2023 19:19:20,164 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
19 Oct 2023 19:19:20,165 INFO : Moving files to folder /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA/Droplet Ladders and creating symlinks
19 Oct 2023 19:19:20,245 INFO : Aligning data files urls in folder: /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA/Droplet Ladders
19 Oct 2023 19:19:20,263 INFO : Done importing folder archive for Droplet Ladders
19 Oct 2023 19:19:20,320 INFO : New folder created with inherited permissions: /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA/I7_Reproducibility
19 Oct 2023 19:19:20,320 INFO : Loading folder archive for I7_Reproducibility
19 Oct 2023 19:19:20,321 INFO : Loading folder properties (folder type, settings and active modules)
19 Oct 2023 19:19:20,387 INFO : Done importing folder properties (folder type, settings and active modules)
19 Oct 2023 19:19:20,389 INFO : Loading container specific module properties
19 Oct 2023 19:19:20,392 INFO : Done importing container specific module properties
19 Oct 2023 19:19:20,393 INFO : Loading etl definitions
19 Oct 2023 19:19:20,394 INFO : Loading wikis
19 Oct 2023 19:19:20,396 INFO : 0 wikis imported
19 Oct 2023 19:19:20,396 INFO : Done importing wikis
19 Oct 2023 19:19:20,397 INFO : Starting Data Class Importer
19 Oct 2023 19:19:20,398 INFO : No types XAR file to process.
19 Oct 2023 19:19:20,398 INFO : Finished Data Class Importer
19 Oct 2023 19:19:20,398 INFO : Starting to copy files
19 Oct 2023 19:19:20,398 INFO : Copied 0 files
19 Oct 2023 19:19:20,399 INFO : Ensuring exp.data rows exist for imported files
19 Oct 2023 19:19:20,404 INFO : Starting Sample Type Importer
19 Oct 2023 19:19:20,404 INFO : No types XAR file to process.
19 Oct 2023 19:19:20,404 INFO : Finished Sample Type Importer
19 Oct 2023 19:19:20,405 INFO : Loading xar
19 Oct 2023 19:19:20,451 INFO : Starting import from i7_2023-08-23_15-06-42.sky.zip
19 Oct 2023 19:19:20,454 INFO : Starting to import Skyline document from i7_2023-08-23_15-06-42.sky.zip
19 Oct 2023 19:19:20,455 INFO : Expanding i7.skyd
19 Oct 2023 19:19:20,458 INFO : Expanding i7.sky.view
19 Oct 2023 19:19:20,459 INFO : Expanding i7.sky
19 Oct 2023 19:19:20,459 INFO : Expanding i7.skyl
19 Oct 2023 19:19:20,464 INFO : 16% Done
19 Oct 2023 19:19:20,599 INFO : Inserting ALBU_HUMAN
19 Oct 2023 19:19:20,602 INFO : 26% Done
19 Oct 2023 19:19:20,609 INFO : 33% Done
19 Oct 2023 19:19:20,609 INFO : Inserting A1AG_HUMAN
19 Oct 2023 19:19:20,611 INFO : 40% Done
19 Oct 2023 19:19:20,615 INFO : Inserting CO3_HUMAN
19 Oct 2023 19:19:20,617 INFO : 47% Done
19 Oct 2023 19:19:20,622 INFO : Inserting CRP_HUMAN
19 Oct 2023 19:19:20,624 INFO : 53% Done
19 Oct 2023 19:19:20,628 INFO : Inserting HEMO_HUMAN
19 Oct 2023 19:19:20,630 INFO : 60% Done
19 Oct 2023 19:19:20,634 INFO : Inserting IGM_HUMAN
19 Oct 2023 19:19:20,636 INFO : 67% Done
19 Oct 2023 19:19:20,641 INFO : 74% Done
19 Oct 2023 19:19:20,641 INFO : Inserting LBP_HUMAN
19 Oct 2023 19:19:20,642 INFO : 79% Done
19 Oct 2023 19:19:20,647 INFO : Inserting MBL_HUMAN
19 Oct 2023 19:19:20,648 INFO : 86% Done
19 Oct 2023 19:19:20,653 INFO : Inserting PERM_HUMAN
19 Oct 2023 19:19:20,654 INFO : 93% Done
19 Oct 2023 19:19:20,658 INFO : Inserting SAA_HUMAN
19 Oct 2023 19:19:20,660 INFO : 98% Done
19 Oct 2023 19:19:20,665 INFO : Done parsing Skyline document.
19 Oct 2023 19:19:20,689 INFO : Creating and populating temp tables for Proportion values
19 Oct 2023 19:19:20,781 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
19 Oct 2023 19:19:20,782 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
19 Oct 2023 19:19:20,783 INFO : Cleaning up temp tables
19 Oct 2023 19:19:21,044 INFO : Completed import of Skyline document from i7_2023-08-23_15-06-42.sky.zip
19 Oct 2023 19:19:21,046 INFO : 100% Done
19 Oct 2023 19:19:21,057 INFO : Done importing xar
19 Oct 2023 19:19:21,059 INFO : Loading pages and webpart properties
19 Oct 2023 19:19:21,123 INFO : Done importing 3 page(s) with 4 webpart(s)
19 Oct 2023 19:19:21,123 INFO : Loading File Browser config
19 Oct 2023 19:19:21,123 INFO : Done importing File Browser config
19 Oct 2023 19:19:21,124 INFO : Starting Sample Status Data import
19 Oct 2023 19:19:21,124 INFO : No sample types XAR file to process.
19 Oct 2023 19:19:21,124 INFO : Finished importing Sample Status Data
19 Oct 2023 19:19:21,129 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
19 Oct 2023 19:19:21,131 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
19 Oct 2023 19:19:21,131 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
19 Oct 2023 19:19:21,132 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
19 Oct 2023 19:19:21,132 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
19 Oct 2023 19:19:21,132 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
19 Oct 2023 19:19:21,133 INFO : Moving files to folder /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA/I7_Reproducibility and creating symlinks
19 Oct 2023 19:19:21,370 INFO : Aligning data files urls in folder: /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA/I7_Reproducibility
19 Oct 2023 19:19:21,378 INFO : Done importing folder archive for I7_Reproducibility
19 Oct 2023 19:19:21,452 INFO : New folder created with inherited permissions: /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA/LC-MS
19 Oct 2023 19:19:21,452 INFO : Loading folder archive for LC-MS
19 Oct 2023 19:19:21,453 INFO : Loading folder properties (folder type, settings and active modules)
19 Oct 2023 19:19:21,523 INFO : Done importing folder properties (folder type, settings and active modules)
19 Oct 2023 19:19:21,524 INFO : Loading container specific module properties
19 Oct 2023 19:19:21,528 INFO : Done importing container specific module properties
19 Oct 2023 19:19:21,529 INFO : Loading etl definitions
19 Oct 2023 19:19:21,530 INFO : Loading wikis
19 Oct 2023 19:19:21,531 INFO : 0 wikis imported
19 Oct 2023 19:19:21,532 INFO : Done importing wikis
19 Oct 2023 19:19:21,533 INFO : Starting Data Class Importer
19 Oct 2023 19:19:21,533 INFO : No types XAR file to process.
19 Oct 2023 19:19:21,533 INFO : Finished Data Class Importer
19 Oct 2023 19:19:21,540 INFO : Starting to copy files
19 Oct 2023 19:19:21,540 INFO : Copied 0 files
19 Oct 2023 19:19:21,540 INFO : Ensuring exp.data rows exist for imported files
19 Oct 2023 19:19:21,546 INFO : Starting Sample Type Importer
19 Oct 2023 19:19:21,546 INFO : No types XAR file to process.
19 Oct 2023 19:19:21,546 INFO : Finished Sample Type Importer
19 Oct 2023 19:19:21,547 INFO : Loading xar
19 Oct 2023 19:19:21,640 INFO : Starting import from LCMS_SARSCoV2_2023-08-14_09-08-41.sky.zip
19 Oct 2023 19:19:21,643 INFO : Starting to import Skyline document from LCMS_SARSCoV2_2023-08-14_09-08-41.sky.zip
19 Oct 2023 19:19:21,644 INFO : Expanding LCMS_SARSCoV2.skyd
19 Oct 2023 19:19:21,650 INFO : Expanding LCMS_SARSCoV2.sky.view
19 Oct 2023 19:19:21,651 INFO : Expanding LCMS_SARSCoV2.sky
19 Oct 2023 19:19:21,654 INFO : Expanding LCMS_SARSCoV2.skyl
19 Oct 2023 19:19:21,660 INFO : 10% Done
19 Oct 2023 19:19:21,846 INFO : Inserting NCAP_SARS2
19 Oct 2023 19:19:21,853 INFO : 41% Done
19 Oct 2023 19:19:21,966 INFO : 70% Done
19 Oct 2023 19:19:22,070 INFO : 98% Done
19 Oct 2023 19:19:22,173 INFO : Done parsing Skyline document.
19 Oct 2023 19:19:22,192 INFO : Creating and populating temp tables for Proportion values
19 Oct 2023 19:19:22,278 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
19 Oct 2023 19:19:22,294 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
19 Oct 2023 19:19:22,300 INFO : Cleaning up temp tables
19 Oct 2023 19:19:22,559 INFO : Completed import of Skyline document from LCMS_SARSCoV2_2023-08-14_09-08-41.sky.zip
19 Oct 2023 19:19:22,561 INFO : 100% Done
19 Oct 2023 19:19:22,568 INFO : Starting import from LCMS_Inflammationpanel_2023-08-14_09-48-25.sky.zip
19 Oct 2023 19:19:22,570 INFO : Starting to import Skyline document from LCMS_Inflammationpanel_2023-08-14_09-48-25.sky.zip
19 Oct 2023 19:19:22,571 INFO : Expanding LCMS_Inflammationpanel.skyd
19 Oct 2023 19:19:22,585 INFO : Expanding LCMS_Inflammationpanel.sky.view
19 Oct 2023 19:19:22,586 INFO : Expanding LCMS_Inflammationpanel.sky
19 Oct 2023 19:19:22,593 INFO : Expanding LCMS_Inflammationpanel.skyl
19 Oct 2023 19:19:22,600 INFO : 3% Done
19 Oct 2023 19:19:22,796 INFO : Inserting ALBU_HUMAN
19 Oct 2023 19:19:22,802 INFO : 14% Done
19 Oct 2023 19:19:22,903 INFO : Inserting A1AG_HUMAN
19 Oct 2023 19:19:22,910 INFO : 24% Done
19 Oct 2023 19:19:23,005 INFO : Inserting CO3_HUMAN
19 Oct 2023 19:19:23,012 INFO : 33% Done
19 Oct 2023 19:19:23,107 INFO : Inserting CRP_HUMAN
19 Oct 2023 19:19:23,113 INFO : 43% Done
19 Oct 2023 19:19:23,209 INFO : Inserting HEMO_HUMAN
19 Oct 2023 19:19:23,216 INFO : 53% Done
19 Oct 2023 19:19:23,312 INFO : Inserting IGM_HUMAN
19 Oct 2023 19:19:23,317 INFO : 59% Done
19 Oct 2023 19:19:23,393 INFO : Inserting LBP_HUMAN
19 Oct 2023 19:19:23,399 INFO : 69% Done
19 Oct 2023 19:19:23,495 INFO : Inserting MBL_HUMAN
19 Oct 2023 19:19:23,502 INFO : 78% Done
19 Oct 2023 19:19:23,599 INFO : Inserting PERM_HUMAN
19 Oct 2023 19:19:23,605 INFO : 88% Done
19 Oct 2023 19:19:23,702 INFO : Inserting SAA_HUMAN
19 Oct 2023 19:19:23,709 INFO : 98% Done
19 Oct 2023 19:19:23,809 INFO : Done parsing Skyline document.
19 Oct 2023 19:19:23,831 INFO : Creating and populating temp tables for Proportion values
19 Oct 2023 19:19:23,925 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
19 Oct 2023 19:19:23,984 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
19 Oct 2023 19:19:24,006 INFO : Cleaning up temp tables
19 Oct 2023 19:19:24,256 INFO : Completed import of Skyline document from LCMS_Inflammationpanel_2023-08-14_09-48-25.sky.zip
19 Oct 2023 19:19:24,258 INFO : 100% Done
19 Oct 2023 19:19:24,273 INFO : Done importing xar
19 Oct 2023 19:19:24,274 INFO : Loading pages and webpart properties
19 Oct 2023 19:19:24,328 INFO : Done importing 3 page(s) with 4 webpart(s)
19 Oct 2023 19:19:24,328 INFO : Loading File Browser config
19 Oct 2023 19:19:24,328 INFO : Done importing File Browser config
19 Oct 2023 19:19:24,329 INFO : Starting Sample Status Data import
19 Oct 2023 19:19:24,329 INFO : No sample types XAR file to process.
19 Oct 2023 19:19:24,329 INFO : Finished importing Sample Status Data
19 Oct 2023 19:19:24,333 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
19 Oct 2023 19:19:24,335 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
19 Oct 2023 19:19:24,335 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
19 Oct 2023 19:19:24,336 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
19 Oct 2023 19:19:24,336 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
19 Oct 2023 19:19:24,336 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
19 Oct 2023 19:19:24,337 INFO : Moving files to folder /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA/LC-MS and creating symlinks
19 Oct 2023 19:19:26,014 INFO : Aligning data files urls in folder: /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA/LC-MS
19 Oct 2023 19:19:26,029 INFO : Done importing folder archive for LC-MS
19 Oct 2023 19:19:26,096 INFO : New folder created with inherited permissions: /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA/Nasopharyngeal_Swabs_UTM
19 Oct 2023 19:19:26,096 INFO : Loading folder archive for Nasopharyngeal_Swabs_UTM
19 Oct 2023 19:19:26,098 INFO : Loading folder properties (folder type, settings and active modules)
19 Oct 2023 19:19:26,171 INFO : Done importing folder properties (folder type, settings and active modules)
19 Oct 2023 19:19:26,172 INFO : Loading container specific module properties
19 Oct 2023 19:19:26,177 INFO : Done importing container specific module properties
19 Oct 2023 19:19:26,178 INFO : Loading etl definitions
19 Oct 2023 19:19:26,179 INFO : Loading wikis
19 Oct 2023 19:19:26,180 INFO : 0 wikis imported
19 Oct 2023 19:19:26,180 INFO : Done importing wikis
19 Oct 2023 19:19:26,181 INFO : Starting Data Class Importer
19 Oct 2023 19:19:26,182 INFO : No types XAR file to process.
19 Oct 2023 19:19:26,182 INFO : Finished Data Class Importer
19 Oct 2023 19:19:26,182 INFO : Starting to copy files
19 Oct 2023 19:19:26,182 INFO : Copied 0 files
19 Oct 2023 19:19:26,183 INFO : Ensuring exp.data rows exist for imported files
19 Oct 2023 19:19:26,187 INFO : Starting Sample Type Importer
19 Oct 2023 19:19:26,187 INFO : No types XAR file to process.
19 Oct 2023 19:19:26,187 INFO : Finished Sample Type Importer
19 Oct 2023 19:19:26,188 INFO : Loading xar
19 Oct 2023 19:19:26,192 INFO : Done importing xar
19 Oct 2023 19:19:26,193 INFO : Loading pages and webpart properties
19 Oct 2023 19:19:26,249 INFO : Done importing 3 page(s) with 3 webpart(s)
19 Oct 2023 19:19:26,249 INFO : Loading File Browser config
19 Oct 2023 19:19:26,249 INFO : Done importing File Browser config
19 Oct 2023 19:19:26,250 INFO : Starting Sample Status Data import
19 Oct 2023 19:19:26,251 INFO : No sample types XAR file to process.
19 Oct 2023 19:19:26,251 INFO : Finished importing Sample Status Data
19 Oct 2023 19:19:26,256 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
19 Oct 2023 19:19:26,258 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
19 Oct 2023 19:19:26,258 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
19 Oct 2023 19:19:26,259 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
19 Oct 2023 19:19:26,259 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
19 Oct 2023 19:19:26,259 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
19 Oct 2023 19:19:26,260 INFO : Loading subfolders and container tabs
19 Oct 2023 19:19:26,312 INFO : New folder created with inherited permissions: /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA/Nasopharyngeal_Swabs_UTM/NCAP_Dilutionseries_UTM
19 Oct 2023 19:19:26,312 INFO : Loading folder archive for NCAP_Dilutionseries_UTM
19 Oct 2023 19:19:26,313 INFO : Loading folder properties (folder type, settings and active modules)
19 Oct 2023 19:19:26,368 INFO : Done importing folder properties (folder type, settings and active modules)
19 Oct 2023 19:19:26,369 INFO : Loading container specific module properties
19 Oct 2023 19:19:26,372 INFO : Done importing container specific module properties
19 Oct 2023 19:19:26,374 INFO : Loading etl definitions
19 Oct 2023 19:19:26,375 INFO : Loading wikis
19 Oct 2023 19:19:26,376 INFO : 0 wikis imported
19 Oct 2023 19:19:26,376 INFO : Done importing wikis
19 Oct 2023 19:19:26,377 INFO : Starting Data Class Importer
19 Oct 2023 19:19:26,377 INFO : No types XAR file to process.
19 Oct 2023 19:19:26,377 INFO : Finished Data Class Importer
19 Oct 2023 19:19:26,378 INFO : Starting to copy files
19 Oct 2023 19:19:26,378 INFO : Copied 0 files
19 Oct 2023 19:19:26,378 INFO : Ensuring exp.data rows exist for imported files
19 Oct 2023 19:19:26,383 INFO : Starting Sample Type Importer
19 Oct 2023 19:19:26,383 INFO : No types XAR file to process.
19 Oct 2023 19:19:26,383 INFO : Finished Sample Type Importer
19 Oct 2023 19:19:26,384 INFO : Loading xar
19 Oct 2023 19:19:26,425 INFO : Starting import from SARSCov2_Dilution_SISCAPA_UTM_2023-08-09_16-51-39.sky.zip
19 Oct 2023 19:19:26,429 INFO : Starting to import Skyline document from SARSCov2_Dilution_SISCAPA_UTM_2023-08-09_16-51-39.sky.zip
19 Oct 2023 19:19:26,429 INFO : Expanding SARSCov2_Dilution_SISCAPA_UTM.skyd
19 Oct 2023 19:19:26,432 INFO : Expanding SARSCov2_Dilution_SISCAPA_UTM.sky.view
19 Oct 2023 19:19:26,432 INFO : Expanding SARSCov2_Dilution_SISCAPA_UTM.sky
19 Oct 2023 19:19:26,433 INFO : Expanding SARSCov2_Dilution_SISCAPA_UTM.skyl
19 Oct 2023 19:19:26,438 INFO : 34% Done
19 Oct 2023 19:19:26,562 INFO : Inserting NCAP_SARS2
19 Oct 2023 19:19:26,564 INFO : 62% Done
19 Oct 2023 19:19:26,574 INFO : 82% Done
19 Oct 2023 19:19:26,580 INFO : 98% Done
19 Oct 2023 19:19:26,586 INFO : Done parsing Skyline document.
19 Oct 2023 19:19:26,604 INFO : Creating and populating temp tables for Proportion values
19 Oct 2023 19:19:26,693 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
19 Oct 2023 19:19:26,694 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
19 Oct 2023 19:19:26,695 INFO : Cleaning up temp tables
19 Oct 2023 19:19:26,958 INFO : Completed import of Skyline document from SARSCov2_Dilution_SISCAPA_UTM_2023-08-09_16-51-39.sky.zip
19 Oct 2023 19:19:26,960 INFO : 100% Done
19 Oct 2023 19:19:26,973 INFO : Done importing xar
19 Oct 2023 19:19:26,974 INFO : Loading pages and webpart properties
19 Oct 2023 19:19:27,029 INFO : Done importing 3 page(s) with 4 webpart(s)
19 Oct 2023 19:19:27,029 INFO : Loading File Browser config
19 Oct 2023 19:19:27,029 INFO : Done importing File Browser config
19 Oct 2023 19:19:27,030 INFO : Starting Sample Status Data import
19 Oct 2023 19:19:27,030 INFO : No sample types XAR file to process.
19 Oct 2023 19:19:27,030 INFO : Finished importing Sample Status Data
19 Oct 2023 19:19:27,035 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
19 Oct 2023 19:19:27,037 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
19 Oct 2023 19:19:27,037 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
19 Oct 2023 19:19:27,038 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
19 Oct 2023 19:19:27,038 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
19 Oct 2023 19:19:27,038 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
19 Oct 2023 19:19:27,039 INFO : Moving files to folder /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA/Nasopharyngeal_Swabs_UTM/NCAP_Dilutionseries_UTM and creating symlinks
19 Oct 2023 19:19:27,157 INFO : Aligning data files urls in folder: /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA/Nasopharyngeal_Swabs_UTM/NCAP_Dilutionseries_UTM
19 Oct 2023 19:19:27,163 INFO : Done importing folder archive for NCAP_Dilutionseries_UTM
19 Oct 2023 19:19:27,213 INFO : New folder created with inherited permissions: /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA/Nasopharyngeal_Swabs_UTM/Patient Samples
19 Oct 2023 19:19:27,213 INFO : Loading folder archive for Patient Samples
19 Oct 2023 19:19:27,214 INFO : Loading folder properties (folder type, settings and active modules)
19 Oct 2023 19:19:27,265 INFO : Done importing folder properties (folder type, settings and active modules)
19 Oct 2023 19:19:27,266 INFO : Loading container specific module properties
19 Oct 2023 19:19:27,269 INFO : Done importing container specific module properties
19 Oct 2023 19:19:27,270 INFO : Loading etl definitions
19 Oct 2023 19:19:27,271 INFO : Loading wikis
19 Oct 2023 19:19:27,273 INFO : 0 wikis imported
19 Oct 2023 19:19:27,273 INFO : Done importing wikis
19 Oct 2023 19:19:27,274 INFO : Starting Data Class Importer
19 Oct 2023 19:19:27,274 INFO : No types XAR file to process.
19 Oct 2023 19:19:27,274 INFO : Finished Data Class Importer
19 Oct 2023 19:19:27,277 INFO : Starting to copy files
19 Oct 2023 19:19:27,277 INFO : Copied 0 files
19 Oct 2023 19:19:27,277 INFO : Ensuring exp.data rows exist for imported files
19 Oct 2023 19:19:27,282 INFO : Starting Sample Type Importer
19 Oct 2023 19:19:27,282 INFO : No types XAR file to process.
19 Oct 2023 19:19:27,282 INFO : Finished Sample Type Importer
19 Oct 2023 19:19:27,283 INFO : Loading xar
19 Oct 2023 19:19:27,334 INFO : Starting import from NCAP_SARS2_PatientSamples_UTM_2023-08-09_17-18-11.sky.zip
19 Oct 2023 19:19:27,336 INFO : Starting to import Skyline document from NCAP_SARS2_PatientSamples_UTM_2023-08-09_17-18-11.sky.zip
19 Oct 2023 19:19:27,337 INFO : Expanding NCAP_SARS2_PatientSamples_UTM.skyd
19 Oct 2023 19:19:27,346 INFO : Expanding NCAP_SARS2_PatientSamples_UTM.sky.view
19 Oct 2023 19:19:27,370 INFO : Expanding NCAP_SARS2_PatientSamples_UTM.sky
19 Oct 2023 19:19:27,370 INFO : Expanding NCAP_SARS2_PatientSamples_UTM.skyl
19 Oct 2023 19:19:27,374 INFO : 25% Done
19 Oct 2023 19:19:27,499 INFO : Inserting NCAP_SARS2
19 Oct 2023 19:19:27,501 INFO : 54% Done
19 Oct 2023 19:19:27,516 INFO : 77% Done
19 Oct 2023 19:19:27,528 INFO : 98% Done
19 Oct 2023 19:19:27,539 INFO : Done parsing Skyline document.
19 Oct 2023 19:19:27,558 INFO : Creating and populating temp tables for Proportion values
19 Oct 2023 19:19:27,637 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
19 Oct 2023 19:19:27,639 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
19 Oct 2023 19:19:27,640 INFO : Cleaning up temp tables
19 Oct 2023 19:19:27,891 INFO : Completed import of Skyline document from NCAP_SARS2_PatientSamples_UTM_2023-08-09_17-18-11.sky.zip
19 Oct 2023 19:19:27,893 INFO : 100% Done
19 Oct 2023 19:19:27,904 INFO : Done importing xar
19 Oct 2023 19:19:27,905 INFO : Loading pages and webpart properties
19 Oct 2023 19:19:27,960 INFO : Done importing 3 page(s) with 4 webpart(s)
19 Oct 2023 19:19:27,960 INFO : Loading File Browser config
19 Oct 2023 19:19:27,960 INFO : Done importing File Browser config
19 Oct 2023 19:19:27,961 INFO : Starting Sample Status Data import
19 Oct 2023 19:19:27,962 INFO : No sample types XAR file to process.
19 Oct 2023 19:19:27,962 INFO : Finished importing Sample Status Data
19 Oct 2023 19:19:27,966 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
19 Oct 2023 19:19:27,968 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
19 Oct 2023 19:19:27,969 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
19 Oct 2023 19:19:27,969 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
19 Oct 2023 19:19:27,969 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
19 Oct 2023 19:19:27,969 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
19 Oct 2023 19:19:27,970 INFO : Moving files to folder /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA/Nasopharyngeal_Swabs_UTM/Patient Samples and creating symlinks
19 Oct 2023 19:19:28,304 INFO : Aligning data files urls in folder: /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA/Nasopharyngeal_Swabs_UTM/Patient Samples
19 Oct 2023 19:19:28,310 INFO : Done importing folder archive for Patient Samples
19 Oct 2023 19:19:28,310 INFO : Done importing subfolders and container tabs
19 Oct 2023 19:19:28,311 INFO : Moving files to folder /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA/Nasopharyngeal_Swabs_UTM and creating symlinks
19 Oct 2023 19:19:28,313 INFO : Aligning data files urls in folder: /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA/Nasopharyngeal_Swabs_UTM
19 Oct 2023 19:19:28,313 INFO : Done importing folder archive for Nasopharyngeal_Swabs_UTM
19 Oct 2023 19:19:28,370 INFO : New folder created with inherited permissions: /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA/Plasma_10plex_Patientcohort
19 Oct 2023 19:19:28,370 INFO : Loading folder archive for Plasma_10plex_Patientcohort
19 Oct 2023 19:19:28,371 INFO : Loading folder properties (folder type, settings and active modules)
19 Oct 2023 19:19:28,430 INFO : Done importing folder properties (folder type, settings and active modules)
19 Oct 2023 19:19:28,431 INFO : Loading container specific module properties
19 Oct 2023 19:19:28,435 INFO : Done importing container specific module properties
19 Oct 2023 19:19:28,436 INFO : Loading etl definitions
19 Oct 2023 19:19:28,437 INFO : Loading wikis
19 Oct 2023 19:19:28,438 INFO : 0 wikis imported
19 Oct 2023 19:19:28,438 INFO : Done importing wikis
19 Oct 2023 19:19:28,439 INFO : Starting Data Class Importer
19 Oct 2023 19:19:28,440 INFO : No types XAR file to process.
19 Oct 2023 19:19:28,440 INFO : Finished Data Class Importer
19 Oct 2023 19:19:28,465 INFO : Starting to copy files
19 Oct 2023 19:19:28,465 INFO : Copied 0 files
19 Oct 2023 19:19:28,465 INFO : Ensuring exp.data rows exist for imported files
19 Oct 2023 19:19:28,470 INFO : Starting Sample Type Importer
19 Oct 2023 19:19:28,470 INFO : No types XAR file to process.
19 Oct 2023 19:19:28,470 INFO : Finished Sample Type Importer
19 Oct 2023 19:19:28,472 INFO : Loading xar
19 Oct 2023 19:19:28,633 INFO : Starting import from 10-plex_patientcohort_2023-08-14_13-26-18.sky.zip
19 Oct 2023 19:19:28,636 INFO : Starting to import Skyline document from 10-plex_patientcohort_2023-08-14_13-26-18.sky.zip
19 Oct 2023 19:19:28,637 INFO : Expanding 10-plex_patientcohort.skyd
19 Oct 2023 19:19:28,710 INFO : Expanding 10-plex_patientcohort.sky.view
19 Oct 2023 19:19:28,711 INFO : Expanding 10-plex_patientcohort.sky
19 Oct 2023 19:19:28,713 INFO : Expanding 10-plex_patientcohort.skyl
19 Oct 2023 19:19:28,719 INFO : 22% Done
19 Oct 2023 19:19:28,908 INFO : Inserting ALBU_HUMAN
19 Oct 2023 19:19:28,911 INFO : 34% Done
19 Oct 2023 19:19:28,926 INFO : Inserting A1AG_HUMAN
19 Oct 2023 19:19:28,929 INFO : 40% Done
19 Oct 2023 19:19:28,943 INFO : Inserting CO3_HUMAN
19 Oct 2023 19:19:28,946 INFO : 48% Done
19 Oct 2023 19:19:28,961 INFO : Inserting CRP_HUMAN
19 Oct 2023 19:19:28,963 INFO : 55% Done
19 Oct 2023 19:19:28,978 INFO : Inserting HEMO_HUMAN
19 Oct 2023 19:19:28,980 INFO : 63% Done
19 Oct 2023 19:19:28,994 INFO : Inserting IGM_HUMAN
19 Oct 2023 19:19:28,996 INFO : 70% Done
19 Oct 2023 19:19:29,010 INFO : Inserting LBP_HUMAN
19 Oct 2023 19:19:29,012 INFO : 77% Done
19 Oct 2023 19:19:29,026 INFO : Inserting MBL_HUMAN
19 Oct 2023 19:19:29,029 INFO : 84% Done
19 Oct 2023 19:19:29,043 INFO : Inserting PERM_HUMAN
19 Oct 2023 19:19:29,045 INFO : 91% Done
19 Oct 2023 19:19:29,060 INFO : 92% Done
19 Oct 2023 19:19:29,061 INFO : Inserting SAA_HUMAN
19 Oct 2023 19:19:29,063 INFO : 98% Done
19 Oct 2023 19:19:29,077 INFO : Done parsing Skyline document.
19 Oct 2023 19:19:29,118 INFO : Creating and populating temp tables for Proportion values
19 Oct 2023 19:19:29,202 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
19 Oct 2023 19:19:29,210 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
19 Oct 2023 19:19:29,213 INFO : Cleaning up temp tables
19 Oct 2023 19:19:29,459 INFO : Completed import of Skyline document from 10-plex_patientcohort_2023-08-14_13-26-18.sky.zip
19 Oct 2023 19:19:29,461 INFO : 100% Done
19 Oct 2023 19:19:29,473 INFO : Done importing xar
19 Oct 2023 19:19:29,474 INFO : Loading pages and webpart properties
19 Oct 2023 19:19:29,532 INFO : Done importing 3 page(s) with 4 webpart(s)
19 Oct 2023 19:19:29,532 INFO : Loading File Browser config
19 Oct 2023 19:19:29,532 INFO : Done importing File Browser config
19 Oct 2023 19:19:29,533 INFO : Starting Sample Status Data import
19 Oct 2023 19:19:29,533 INFO : No sample types XAR file to process.
19 Oct 2023 19:19:29,533 INFO : Finished importing Sample Status Data
19 Oct 2023 19:19:29,539 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
19 Oct 2023 19:19:29,542 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
19 Oct 2023 19:19:29,543 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
19 Oct 2023 19:19:29,543 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
19 Oct 2023 19:19:29,543 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
19 Oct 2023 19:19:29,543 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
19 Oct 2023 19:19:29,544 INFO : Moving files to folder /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA/Plasma_10plex_Patientcohort and creating symlinks
19 Oct 2023 19:19:31,182 INFO : Aligning data files urls in folder: /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA/Plasma_10plex_Patientcohort
19 Oct 2023 19:19:31,189 INFO : Done importing folder archive for Plasma_10plex_Patientcohort
19 Oct 2023 19:19:31,242 INFO : New folder created with inherited permissions: /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA/Reproducibility_AYNVTQ
19 Oct 2023 19:19:31,242 INFO : Loading folder archive for Reproducibility_AYNVTQ
19 Oct 2023 19:19:31,243 INFO : Loading folder properties (folder type, settings and active modules)
19 Oct 2023 19:19:31,302 INFO : Done importing folder properties (folder type, settings and active modules)
19 Oct 2023 19:19:31,303 INFO : Loading container specific module properties
19 Oct 2023 19:19:31,306 INFO : Done importing container specific module properties
19 Oct 2023 19:19:31,307 INFO : Loading etl definitions
19 Oct 2023 19:19:31,309 INFO : Loading wikis
19 Oct 2023 19:19:31,310 INFO : 0 wikis imported
19 Oct 2023 19:19:31,310 INFO : Done importing wikis
19 Oct 2023 19:19:31,311 INFO : Starting Data Class Importer
19 Oct 2023 19:19:31,311 INFO : No types XAR file to process.
19 Oct 2023 19:19:31,311 INFO : Finished Data Class Importer
19 Oct 2023 19:19:31,312 INFO : Starting to copy files
19 Oct 2023 19:19:31,312 INFO : Copied 0 files
19 Oct 2023 19:19:31,312 INFO : Ensuring exp.data rows exist for imported files
19 Oct 2023 19:19:31,317 INFO : Starting Sample Type Importer
19 Oct 2023 19:19:31,317 INFO : No types XAR file to process.
19 Oct 2023 19:19:31,317 INFO : Finished Sample Type Importer
19 Oct 2023 19:19:31,318 INFO : Loading xar
19 Oct 2023 19:19:31,644 INFO : Starting import from SARSCov2_Reproducibility_2023-08-09_16-23-23.sky.zip
19 Oct 2023 19:19:31,647 INFO : Starting to import Skyline document from SARSCov2_Reproducibility_2023-08-09_16-23-23.sky.zip
19 Oct 2023 19:19:31,648 INFO : Expanding SARSCov2_Reproducibility.skyd
19 Oct 2023 19:19:31,722 INFO : Expanding SARSCov2_Reproducibility.sky.view
19 Oct 2023 19:19:31,723 INFO : Expanding SARSCov2_Reproducibility.sky
19 Oct 2023 19:19:31,724 INFO : Expanding SARSCov2_Reproducibility.skyl
19 Oct 2023 19:19:31,731 INFO : 26% Done
19 Oct 2023 19:19:31,903 INFO : Inserting NCAP_SARS2
19 Oct 2023 19:19:31,910 INFO : 98% Done
19 Oct 2023 19:19:31,989 INFO : Done parsing Skyline document.
19 Oct 2023 19:19:32,010 INFO : Creating and populating temp tables for Proportion values
19 Oct 2023 19:19:32,101 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
19 Oct 2023 19:19:32,106 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
19 Oct 2023 19:19:32,108 INFO : Cleaning up temp tables
19 Oct 2023 19:19:32,376 INFO : Completed import of Skyline document from SARSCov2_Reproducibility_2023-08-09_16-23-23.sky.zip
19 Oct 2023 19:19:32,378 INFO : 100% Done
19 Oct 2023 19:19:32,389 INFO : Done importing xar
19 Oct 2023 19:19:32,390 INFO : Loading pages and webpart properties
19 Oct 2023 19:19:32,448 INFO : Done importing 3 page(s) with 4 webpart(s)
19 Oct 2023 19:19:32,449 INFO : Loading File Browser config
19 Oct 2023 19:19:32,449 INFO : Done importing File Browser config
19 Oct 2023 19:19:32,450 INFO : Starting Sample Status Data import
19 Oct 2023 19:19:32,450 INFO : No sample types XAR file to process.
19 Oct 2023 19:19:32,450 INFO : Finished importing Sample Status Data
19 Oct 2023 19:19:32,455 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
19 Oct 2023 19:19:32,458 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
19 Oct 2023 19:19:32,458 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
19 Oct 2023 19:19:32,459 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
19 Oct 2023 19:19:32,459 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
19 Oct 2023 19:19:32,459 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
19 Oct 2023 19:19:32,460 INFO : Moving files to folder /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA/Reproducibility_AYNVTQ and creating symlinks
19 Oct 2023 19:19:33,238 INFO : Aligning data files urls in folder: /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA/Reproducibility_AYNVTQ
19 Oct 2023 19:19:33,245 INFO : Done importing folder archive for Reproducibility_AYNVTQ
19 Oct 2023 19:19:33,302 INFO : New folder created with inherited permissions: /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA/Sample additives
19 Oct 2023 19:19:33,302 INFO : Loading folder archive for Sample additives
19 Oct 2023 19:19:33,304 INFO : Loading folder properties (folder type, settings and active modules)
19 Oct 2023 19:19:33,371 INFO : Done importing folder properties (folder type, settings and active modules)
19 Oct 2023 19:19:33,372 INFO : Loading container specific module properties
19 Oct 2023 19:19:33,376 INFO : Done importing container specific module properties
19 Oct 2023 19:19:33,377 INFO : Loading etl definitions
19 Oct 2023 19:19:33,378 INFO : Loading wikis
19 Oct 2023 19:19:33,379 INFO : 0 wikis imported
19 Oct 2023 19:19:33,379 INFO : Done importing wikis
19 Oct 2023 19:19:33,381 INFO : Starting Data Class Importer
19 Oct 2023 19:19:33,381 INFO : No types XAR file to process.
19 Oct 2023 19:19:33,381 INFO : Finished Data Class Importer
19 Oct 2023 19:19:33,382 INFO : Starting to copy files
19 Oct 2023 19:19:33,382 INFO : Copied 0 files
19 Oct 2023 19:19:33,382 INFO : Ensuring exp.data rows exist for imported files
19 Oct 2023 19:19:33,387 INFO : Starting Sample Type Importer
19 Oct 2023 19:19:33,387 INFO : No types XAR file to process.
19 Oct 2023 19:19:33,387 INFO : Finished Sample Type Importer
19 Oct 2023 19:19:33,388 INFO : Loading xar
19 Oct 2023 19:19:33,505 INFO : Starting import from SARSCov2_NaCl_2023-08-10_17-05-12.sky.zip
19 Oct 2023 19:19:33,508 INFO : Starting to import Skyline document from SARSCov2_NaCl_2023-08-10_17-05-12.sky.zip
19 Oct 2023 19:19:33,509 INFO : Expanding SARSCov2_NaCl.skyd
19 Oct 2023 19:19:33,510 INFO : Expanding SARSCov2_NaCl.sky.view
19 Oct 2023 19:19:33,511 INFO : Expanding SARSCov2_NaCl.sky
19 Oct 2023 19:19:33,511 INFO : Expanding SARSCov2_NaCl.skyl
19 Oct 2023 19:19:33,516 INFO : 38% Done
19 Oct 2023 19:19:33,634 INFO : Inserting NCAP_SARS2
19 Oct 2023 19:19:33,637 INFO : 98% Done
19 Oct 2023 19:19:33,646 INFO : Done parsing Skyline document.
19 Oct 2023 19:19:33,662 INFO : Creating and populating temp tables for Proportion values
19 Oct 2023 19:19:33,748 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
19 Oct 2023 19:19:33,749 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
19 Oct 2023 19:19:33,749 INFO : Cleaning up temp tables
19 Oct 2023 19:19:34,001 INFO : Completed import of Skyline document from SARSCov2_NaCl_2023-08-10_17-05-12.sky.zip
19 Oct 2023 19:19:34,003 INFO : 100% Done
19 Oct 2023 19:19:34,010 INFO : Starting import from SARSCov2_TRIS_2023-08-10_17-07-21.sky.zip
19 Oct 2023 19:19:34,012 INFO : Starting to import Skyline document from SARSCov2_TRIS_2023-08-10_17-07-21.sky.zip
19 Oct 2023 19:19:34,012 INFO : Expanding SARSCov2_TRIS.skyd
19 Oct 2023 19:19:34,014 INFO : Expanding SARSCov2_TRIS.sky.view
19 Oct 2023 19:19:34,014 INFO : Expanding SARSCov2_TRIS.sky
19 Oct 2023 19:19:34,015 INFO : Expanding SARSCov2_TRIS.skyl
19 Oct 2023 19:19:34,019 INFO : 38% Done
19 Oct 2023 19:19:34,122 INFO : Inserting NCAP_SARS2
19 Oct 2023 19:19:34,124 INFO : 98% Done
19 Oct 2023 19:19:34,131 INFO : Done parsing Skyline document.
19 Oct 2023 19:19:34,146 INFO : Creating and populating temp tables for Proportion values
19 Oct 2023 19:19:34,223 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
19 Oct 2023 19:19:34,224 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
19 Oct 2023 19:19:34,224 INFO : Cleaning up temp tables
19 Oct 2023 19:19:34,481 INFO : Completed import of Skyline document from SARSCov2_TRIS_2023-08-10_17-07-21.sky.zip
19 Oct 2023 19:19:34,483 INFO : 100% Done
19 Oct 2023 19:19:34,490 INFO : Starting import from SARSCov2_CHAPS_2023-08-10_17-09-26.sky.zip
19 Oct 2023 19:19:34,492 INFO : Starting to import Skyline document from SARSCov2_CHAPS_2023-08-10_17-09-26.sky.zip
19 Oct 2023 19:19:34,493 INFO : Expanding SARSCov2_CHAPS.skyd
19 Oct 2023 19:19:34,494 INFO : Expanding SARSCov2_CHAPS.sky.view
19 Oct 2023 19:19:34,495 INFO : Expanding SARSCov2_CHAPS.sky
19 Oct 2023 19:19:34,495 INFO : Expanding SARSCov2_CHAPS.skyl
19 Oct 2023 19:19:34,499 INFO : 38% Done
19 Oct 2023 19:19:34,607 INFO : Inserting NCAP_SARS2
19 Oct 2023 19:19:34,609 INFO : 98% Done
19 Oct 2023 19:19:34,616 INFO : Done parsing Skyline document.
19 Oct 2023 19:19:34,633 INFO : Creating and populating temp tables for Proportion values
19 Oct 2023 19:19:34,715 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
19 Oct 2023 19:19:34,716 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
19 Oct 2023 19:19:34,717 INFO : Cleaning up temp tables
19 Oct 2023 19:19:34,988 INFO : Completed import of Skyline document from SARSCov2_CHAPS_2023-08-10_17-09-26.sky.zip
19 Oct 2023 19:19:34,990 INFO : 100% Done
19 Oct 2023 19:19:34,997 INFO : Starting import from SARSCov2_ACN_2023-08-10_17-10-21.sky.zip
19 Oct 2023 19:19:34,999 INFO : Starting to import Skyline document from SARSCov2_ACN_2023-08-10_17-10-21.sky.zip
19 Oct 2023 19:19:35,000 INFO : Expanding SARSCov2_ACN.skyd
19 Oct 2023 19:19:35,001 INFO : Expanding SARSCov2_ACN.sky.view
19 Oct 2023 19:19:35,001 INFO : Expanding SARSCov2_ACN.sky
19 Oct 2023 19:19:35,002 INFO : Expanding SARSCov2_ACN.skyl
19 Oct 2023 19:19:35,006 INFO : 38% Done
19 Oct 2023 19:19:35,116 INFO : Inserting NCAP_SARS2
19 Oct 2023 19:19:35,119 INFO : 98% Done
19 Oct 2023 19:19:35,125 INFO : Done parsing Skyline document.
19 Oct 2023 19:19:35,142 INFO : Creating and populating temp tables for Proportion values
19 Oct 2023 19:19:35,225 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
19 Oct 2023 19:19:35,225 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
19 Oct 2023 19:19:35,226 INFO : Cleaning up temp tables
19 Oct 2023 19:19:35,485 INFO : Completed import of Skyline document from SARSCov2_ACN_2023-08-10_17-10-21.sky.zip
19 Oct 2023 19:19:35,486 INFO : 100% Done
19 Oct 2023 19:19:35,493 INFO : Starting import from SARSCov2_AmBIC_2023-08-10_17-12-11.sky.zip
19 Oct 2023 19:19:35,495 INFO : Starting to import Skyline document from SARSCov2_AmBIC_2023-08-10_17-12-11.sky.zip
19 Oct 2023 19:19:35,496 INFO : Expanding SARSCov2_AmBIC.skyd
19 Oct 2023 19:19:35,497 INFO : Expanding SARSCov2_AmBIC.sky.view
19 Oct 2023 19:19:35,498 INFO : Expanding SARSCov2_AmBIC.sky
19 Oct 2023 19:19:35,498 INFO : Expanding SARSCov2_AmBIC.skyl
19 Oct 2023 19:19:35,503 INFO : 38% Done
19 Oct 2023 19:19:35,611 INFO : Inserting NCAP_SARS2
19 Oct 2023 19:19:35,613 INFO : 98% Done
19 Oct 2023 19:19:35,619 INFO : Done parsing Skyline document.
19 Oct 2023 19:19:35,637 INFO : Creating and populating temp tables for Proportion values
19 Oct 2023 19:19:35,712 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
19 Oct 2023 19:19:35,712 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
19 Oct 2023 19:19:35,713 INFO : Cleaning up temp tables
19 Oct 2023 19:19:35,967 INFO : Completed import of Skyline document from SARSCov2_AmBIC_2023-08-10_17-12-11.sky.zip
19 Oct 2023 19:19:35,969 INFO : 100% Done
19 Oct 2023 19:19:35,976 INFO : Starting import from SARSCov2_PBS_2023-08-10_17-13-28.sky.zip
19 Oct 2023 19:19:35,978 INFO : Starting to import Skyline document from SARSCov2_PBS_2023-08-10_17-13-28.sky.zip
19 Oct 2023 19:19:35,979 INFO : Expanding SARSCov2_PBS.skyd
19 Oct 2023 19:19:35,980 INFO : Expanding SARSCov2_PBS.sky.view
19 Oct 2023 19:19:35,980 INFO : Expanding SARSCov2_PBS.sky
19 Oct 2023 19:19:35,981 INFO : Expanding SARSCov2_PBS.skyl
19 Oct 2023 19:19:35,985 INFO : 38% Done
19 Oct 2023 19:19:36,096 INFO : Inserting NCAP_SARS2
19 Oct 2023 19:19:36,098 INFO : 98% Done
19 Oct 2023 19:19:36,104 INFO : Done parsing Skyline document.
19 Oct 2023 19:19:36,122 INFO : Creating and populating temp tables for Proportion values
19 Oct 2023 19:19:36,202 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
19 Oct 2023 19:19:36,203 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
19 Oct 2023 19:19:36,204 INFO : Cleaning up temp tables
19 Oct 2023 19:19:36,467 INFO : Completed import of Skyline document from SARSCov2_PBS_2023-08-10_17-13-28.sky.zip
19 Oct 2023 19:19:36,469 INFO : 100% Done
19 Oct 2023 19:19:36,496 INFO : Done importing xar
19 Oct 2023 19:19:36,497 INFO : Loading pages and webpart properties
19 Oct 2023 19:19:36,556 INFO : Done importing 3 page(s) with 4 webpart(s)
19 Oct 2023 19:19:36,556 INFO : Loading File Browser config
19 Oct 2023 19:19:36,556 INFO : Done importing File Browser config
19 Oct 2023 19:19:36,557 INFO : Starting Sample Status Data import
19 Oct 2023 19:19:36,558 INFO : No sample types XAR file to process.
19 Oct 2023 19:19:36,558 INFO : Finished importing Sample Status Data
19 Oct 2023 19:19:36,563 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
19 Oct 2023 19:19:36,566 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
19 Oct 2023 19:19:36,566 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
19 Oct 2023 19:19:36,566 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
19 Oct 2023 19:19:36,567 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
19 Oct 2023 19:19:36,567 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
19 Oct 2023 19:19:36,568 INFO : Moving files to folder /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA/Sample additives and creating symlinks
19 Oct 2023 19:19:36,844 INFO : Aligning data files urls in folder: /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA/Sample additives
19 Oct 2023 19:19:36,877 INFO : Done importing folder archive for Sample additives
19 Oct 2023 19:19:36,877 INFO : Done importing subfolders and container tabs
19 Oct 2023 19:19:36,877 INFO : Moving files to folder /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA and creating symlinks
19 Oct 2023 19:19:36,881 INFO : Aligning data files urls in folder: /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA
19 Oct 2023 19:19:36,882 INFO : Importing files metadata.
19 Oct 2023 19:19:36,898 INFO :
19 Oct 2023 19:19:36,898 INFO : Experiment import completed successfully.
19 Oct 2023 19:19:36,898 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
19 Oct 2023 19:19:36,921 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
19 Oct 2023 19:19:36,921 INFO :
19 Oct 2023 19:19:36,921 INFO : Checking for library folders.
19 Oct 2023 19:19:36,932 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
19 Oct 2023 19:19:36,951 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
19 Oct 2023 19:19:36,951 INFO :
19 Oct 2023 19:19:36,951 INFO : Finishing up experiment copy.
19 Oct 2023 19:19:36,953 INFO : Updating TargetedMS experiment entry in target folder /Panorama Public/2023/U of Ghent Pharma Biotech Lab - Echo-MS SISCAPA
19 Oct 2023 19:19:36,953 INFO : Setting version on new experiment to 1
19 Oct 2023 19:19:36,957 INFO : Updating permanent link to point to the new copy of the data.
19 Oct 2023 19:19:36,960 INFO : Removing copy permissions given to Panorama Public
19 Oct 2023 19:19:37,015 INFO : Adding read permissions to all users that are folder admins in the source folder.
19 Oct 2023 19:19:37,015 INFO : Assigning ReaderRole to bart.vanpuyvelde@ugent.be
19 Oct 2023 19:19:37,015 INFO : Assigning ReaderRole to christie.hunter@sciex.com
19 Oct 2023 19:19:37,015 INFO : Assigning ReaderRole to simon.daled@ugent.be
19 Oct 2023 19:19:37,015 INFO : Assigning PanoramaPublicSubmitterRole to bart.vanpuyvelde@ugent.be
19 Oct 2023 19:19:37,024 INFO : User bart.vanpuyvelde@ugent.be is already a member of group Panorama Public Submitters
19 Oct 2023 19:19:37,024 INFO : Updating the 'Raw Data' tab configuration
19 Oct 2023 19:19:37,035 INFO : Creating a reviewer account.
19 Oct 2023 19:19:37,233 INFO : Created reviewer with email: User panorama+reviewer218@proteinms.net
19 Oct 2023 19:19:37,246 INFO : Adding user panorama+reviewer218@proteinms.net to group Reviewers
19 Oct 2023 19:19:37,248 INFO : Hiding the Data Pipeline tab.
19 Oct 2023 19:19:37,293 INFO : Updating Submission. Setting copiedExperimentId to 1709
19 Oct 2023 19:19:42,460 INFO : Assigning a ProteomeXchange ID.
19 Oct 2023 19:19:42,853 INFO : Assigned ProteomeXchange ID: PXD046249
19 Oct 2023 19:19:42,853 INFO : Assigning a DOI.
19 Oct 2023 19:19:44,453 INFO : Assigned DOI: 10.6069/jz27-8w98
19 Oct 2023 19:19:44,523 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'