27 Feb 2023 21:40:33,349 INFO : Copying experiment "Metrologically traceable quantification of three apolipoprotein E isoforms in cerebrospinal fluid" from folder /TPAD2.0/Project 3/ApoE Assay/ApoE Assay Paper to /Panorama Public/2023/TPAD2.0 - ApoE Assay Paper

27 Feb 2023 21:40:33,349 INFO : =======================================

27 Feb 2023 21:40:33,361 DEBUG: Resetting Job ID: f8ac1c97-9957-103b-b327-fea6ddf5f3bc

27 Feb 2023 21:40:33,378 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'

27 Feb 2023 21:40:33,378 INFO : 

27 Feb 2023 21:40:33,378 INFO : Exporting experiment.

27 Feb 2023 21:41:20,881 INFO : Exporting files metadata.

27 Feb 2023 21:41:20,881 DEBUG: [/TPAD2.0/Project 3/ApoE Assay/ApoE Assay Paper]  Writing files metadata to /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0 - ApoE Assay Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export

27 Feb 2023 21:41:20,883 DEBUG: [/TPAD2.0/Project 3/ApoE Assay/ApoE Assay Paper/01_Method development]  Writing files metadata to /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0 - ApoE Assay Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/01_Method development

27 Feb 2023 21:41:20,967 DEBUG: [/TPAD2.0/Project 3/ApoE Assay/ApoE Assay Paper/02_Method validation]  Writing files metadata to /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0 - ApoE Assay Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method validation

27 Feb 2023 21:41:21,272 DEBUG: [/TPAD2.0/Project 3/ApoE Assay/ApoE Assay Paper/03_Method application]  Writing files metadata to /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0 - ApoE Assay Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/03_Method application

27 Feb 2023 21:41:21,498 DEBUG: [/TPAD2.0/Project 3/ApoE Assay/ApoE Assay Paper/04-Value assignment secondary calibrator]  Writing files metadata to /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0 - ApoE Assay Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/04-Value assignment secondary calibrator

27 Feb 2023 21:41:21,582 INFO : 

27 Feb 2023 21:41:21,582 INFO : Experiment export completed successfully.

27 Feb 2023 21:41:21,582 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'

27 Feb 2023 21:41:21,602 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'

27 Feb 2023 21:41:21,602 INFO : 

27 Feb 2023 21:41:21,602 INFO : Importing experiment.

27 Feb 2023 21:41:21,604 DEBUG: [/Panorama Public/2023/TPAD2.0 - ApoE Assay Paper] Importing folder properties from: /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0 - ApoE Assay Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export

27 Feb 2023 21:41:21,604 INFO : Loading folder properties (folder type, settings and active modules)

27 Feb 2023 21:41:21,605 DEBUG: [/Panorama Public/2023/TPAD2.0 - ApoE Assay Paper] Folder type: Targeted MS

27 Feb 2023 21:41:21,605 DEBUG: [/Panorama Public/2023/TPAD2.0 - ApoE Assay Paper] Active modules: Internal, API, Pipeline, Wiki, MS2, TargetedMS, Core, Issues, Experiment, Assay, FileContent, PanoramaPublic, Search, Announcements, Query

27 Feb 2023 21:41:21,662 INFO : Done importing folder properties (folder type, settings and active modules)

27 Feb 2023 21:41:21,663 INFO : Loading container specific module properties

27 Feb 2023 21:41:21,671 INFO : Done importing container specific module properties

27 Feb 2023 21:41:21,672 INFO : Loading etl definitions

27 Feb 2023 21:41:21,672 INFO : Loading wikis

27 Feb 2023 21:41:21,673 INFO : 0 wikis imported

27 Feb 2023 21:41:21,673 INFO : Done importing wikis

27 Feb 2023 21:41:21,673 INFO : Starting to copy files

27 Feb 2023 21:41:21,676 INFO : Copied 3 files

27 Feb 2023 21:41:21,676 INFO : Ensuring exp.data rows exist for imported files

27 Feb 2023 21:41:21,701 INFO : Starting Sample Type and Data Class import

27 Feb 2023 21:41:21,701 INFO : No types XAR file to process.

27 Feb 2023 21:41:21,701 INFO : Finished importing Sample Types and Data Classes

27 Feb 2023 21:41:21,702 INFO : Loading xar

27 Feb 2023 21:41:21,709 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-11181:Metrologically+traceable+quantification+of+three+apolipoprotein+E+isoforms+in+cerebrospinal+fluid'

27 Feb 2023 21:41:21,709 DEBUG: Experiment/Run group import complete

27 Feb 2023 21:41:21,709 INFO : Done importing xar

27 Feb 2023 21:41:21,710 INFO : Loading pages and webpart properties

27 Feb 2023 21:41:21,781 INFO : Done importing 4 page(s) with 7 webpart(s)

27 Feb 2023 21:41:21,781 INFO : Loading File Browser config

27 Feb 2023 21:41:21,781 INFO : Done importing File Browser config

27 Feb 2023 21:41:21,782 INFO : Starting Sample Status Data import

27 Feb 2023 21:41:21,782 INFO : No sample types XAR file to process.

27 Feb 2023 21:41:21,782 INFO : Finished importing Sample Status Data

27 Feb 2023 21:41:21,786 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType

27 Feb 2023 21:41:21,788 INFO : A row containing [Description: 'null', Color: '800000', Name: 'Reagent Change'] values already exists. Skipping

27 Feb 2023 21:41:21,789 INFO : A row containing [Description: 'null', Color: 'FF0000', Name: 'Instrumentation Change'] values already exists. Skipping

27 Feb 2023 21:41:21,789 INFO : A row containing [Description: 'null', Color: '0000FF', Name: 'Technician Change'] values already exists. Skipping

27 Feb 2023 21:41:21,789 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType

27 Feb 2023 21:41:21,790 INFO : Loading subfolders and container tabs

27 Feb 2023 21:41:21,828 INFO : New folder created with inherited permissions: /Panorama Public/2023/TPAD2.0 - ApoE Assay Paper/01_Method development

27 Feb 2023 21:41:21,828 INFO : Loading folder archive for 01_Method development

27 Feb 2023 21:41:21,828 DEBUG: [/Panorama Public/2023/TPAD2.0 - ApoE Assay Paper/01_Method development] Importing folder properties from: /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0 - ApoE Assay Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/01_Method development

27 Feb 2023 21:41:21,829 INFO : Loading folder properties (folder type, settings and active modules)

27 Feb 2023 21:41:21,829 DEBUG: [/Panorama Public/2023/TPAD2.0 - ApoE Assay Paper/01_Method development] Folder type: Targeted MS

27 Feb 2023 21:41:21,829 DEBUG: [/Panorama Public/2023/TPAD2.0 - ApoE Assay Paper/01_Method development] Active modules: Internal, API, Pipeline, Wiki, MS2, TargetedMS, Core, Issues, Experiment, Assay, FileContent, PanoramaPublic, Search, Announcements, Query

27 Feb 2023 21:41:21,877 INFO : Done importing folder properties (folder type, settings and active modules)

27 Feb 2023 21:41:21,878 INFO : Loading container specific module properties

27 Feb 2023 21:41:21,890 INFO : Done importing container specific module properties

27 Feb 2023 21:41:21,891 INFO : Loading etl definitions

27 Feb 2023 21:41:21,892 INFO : Loading wikis

27 Feb 2023 21:41:21,893 INFO : 0 wikis imported

27 Feb 2023 21:41:21,893 INFO : Done importing wikis

27 Feb 2023 21:41:21,893 INFO : Starting to copy files

27 Feb 2023 21:41:22,008 INFO : Copied 154 files

27 Feb 2023 21:41:22,008 INFO : Ensuring exp.data rows exist for imported files

27 Feb 2023 21:41:22,606 INFO : Starting Sample Type and Data Class import

27 Feb 2023 21:41:22,606 INFO : No types XAR file to process.

27 Feb 2023 21:41:22,606 INFO : Finished importing Sample Types and Data Classes

27 Feb 2023 21:41:22,607 INFO : Loading xar

27 Feb 2023 21:41:22,713 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-11182:TargetedMS.ImportSkyZip'

27 Feb 2023 21:41:22,715 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-11182:TargetedMS.ImportSkyZip.Core'

27 Feb 2023 21:41:22,717 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-11182:TargetedMS.ImportSkyZip.Output'

27 Feb 2023 21:41:22,717 DEBUG: Protocol import complete

27 Feb 2023 21:41:22,725 DEBUG: Protocol action set import complete

27 Feb 2023 21:41:22,731 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11182:TargetedMS.ImportSkyZip'

27 Feb 2023 21:41:22,736 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11182:5ade8b55-5880-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:22,739 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11182:5ade8b66-5880-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:22,739 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11182:TargetedMS.ImportSkyZip.Core'

27 Feb 2023 21:41:22,741 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11182:TargetedMS.ImportSkyZip.Output'

27 Feb 2023 21:41:22,742 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11182:5ade8b73-5880-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:22,745 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11182:TargetedMS.ImportSkyZip'

27 Feb 2023 21:41:22,748 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11182:5adea767-5880-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:22,751 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11182:5adea776-5880-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:22,751 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11182:TargetedMS.ImportSkyZip.Core'

27 Feb 2023 21:41:22,753 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11182:TargetedMS.ImportSkyZip.Output'

27 Feb 2023 21:41:22,753 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11182:5adea78b-5880-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:22,756 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11182:TargetedMS.ImportSkyZip'

27 Feb 2023 21:41:22,759 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11182:437d0a4f-5881-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:22,762 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11182:437d0a83-5881-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:22,762 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11182:TargetedMS.ImportSkyZip.Core'

27 Feb 2023 21:41:22,764 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11182:TargetedMS.ImportSkyZip.Output'

27 Feb 2023 21:41:22,764 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11182:437d0a9c-5881-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:22,767 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11182:TargetedMS.ImportSkyZip'

27 Feb 2023 21:41:22,770 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11182:437d1425-5881-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:22,773 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11182:437d1434-5881-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:22,773 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11182:TargetedMS.ImportSkyZip.Core'

27 Feb 2023 21:41:22,774 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11182:TargetedMS.ImportSkyZip.Output'

27 Feb 2023 21:41:22,775 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11182:437d143d-5881-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:22,776 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/01_Method%20development/xar/experiments_and_runs.xar.exploded/Run146974/220330_ApoE_HoofnagleLab_Analyte%20Free%20Matrix_Day%201.sky.zip into the system

27 Feb 2023 21:41:22,778 INFO : Starting import from 220330_ApoE_HoofnagleLab_Analyte Free Matrix_Day 1.sky.zip

27 Feb 2023 21:41:22,781 INFO : Starting to import Skyline document from 220330_ApoE_HoofnagleLab_Analyte Free Matrix_Day 1.sky.zip

27 Feb 2023 21:41:22,782 INFO : Expanding 220330_ApoE_HoofnagleLab_Analyte Free Matrix_Day 1.skyd

27 Feb 2023 21:41:22,796 INFO : Expanding 220330_ApoE_HoofnagleLab_Analyte Free Matrix_Day 1.sky.view

27 Feb 2023 21:41:22,797 INFO : Expanding 220330_ApoE_HoofnagleLab_Analyte Free Matrix_Day 1.sky

27 Feb 2023 21:41:22,800 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13

27 Feb 2023 21:41:22,803 INFO : 5% Done

27 Feb 2023 21:41:22,824 DEBUG: Starting to load chromatogram headers

27 Feb 2023 21:41:22,824 DEBUG: Done loading chromatogram headers

27 Feb 2023 21:41:22,985 INFO : Inserting ApoE Peptides

27 Feb 2023 21:41:22,997 INFO : 23% Done

27 Feb 2023 21:41:23,072 INFO : 46% Done

27 Feb 2023 21:41:23,168 INFO : 63% Done

27 Feb 2023 21:41:23,249 INFO : 82% Done

27 Feb 2023 21:41:23,329 INFO : 98% Done

27 Feb 2023 21:41:23,393 DEBUG: Total peptides inserted: 5

27 Feb 2023 21:41:23,394 INFO : Done parsing Skyline document.

27 Feb 2023 21:41:23,395 INFO : Creating and populating temp tables for Proportion values

27 Feb 2023 21:41:23,459 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

27 Feb 2023 21:41:23,493 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

27 Feb 2023 21:41:23,497 INFO : Cleaning up temp tables

27 Feb 2023 21:41:23,758 INFO : Completed import of Skyline document from 220330_ApoE_HoofnagleLab_Analyte Free Matrix_Day 1.sky.zip

27 Feb 2023 21:41:23,760 INFO : 100% Done

27 Feb 2023 21:41:23,766 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/01_Method%20development/xar/experiments_and_runs.xar.exploded/Run146974/220330_ApoE_HoofnagleLab_Analyte%20Free%20Matrix_Day%201.sky.zip into the system

27 Feb 2023 21:41:23,766 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/01_Method%20development/xar/experiments_and_runs.xar.exploded/Run146974/220330_ApoE_HoofnagleLab_Analyte%20Free%20Matrix_Day%201/220330_ApoE_HoofnagleLab_Analyte%20Free%20Matrix_Day%201.skyd into the system

27 Feb 2023 21:41:23,766 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/01_Method%20development/xar/experiments_and_runs.xar.exploded/Run146974/220330_ApoE_HoofnagleLab_Analyte%20Free%20Matrix_Day%201/220330_ApoE_HoofnagleLab_Analyte%20Free%20Matrix_Day%201.skyd into the system

27 Feb 2023 21:41:23,766 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/01_Method%20development/xar/experiments_and_runs.xar.exploded/Run146975/220405_ApoE_HoofnagleLab_Analyte%20Free%20Matrix_Day%202.sky.zip into the system

27 Feb 2023 21:41:23,768 INFO : Starting import from 220405_ApoE_HoofnagleLab_Analyte Free Matrix_Day 2.sky.zip

27 Feb 2023 21:41:23,769 INFO : Starting to import Skyline document from 220405_ApoE_HoofnagleLab_Analyte Free Matrix_Day 2.sky.zip

27 Feb 2023 21:41:23,770 INFO : Expanding 220405_ApoE_HoofnagleLab_Analyte Free Matrix_Day 2.skyd

27 Feb 2023 21:41:23,781 INFO : Expanding 220405_ApoE_HoofnagleLab_Analyte Free Matrix_Day 2.sky.view

27 Feb 2023 21:41:23,782 INFO : Expanding 220405_ApoE_HoofnagleLab_Analyte Free Matrix_Day 2.sky

27 Feb 2023 21:41:23,789 INFO : 6% Done

27 Feb 2023 21:41:23,807 DEBUG: Starting to load chromatogram headers

27 Feb 2023 21:41:23,807 DEBUG: Done loading chromatogram headers

27 Feb 2023 21:41:23,942 INFO : Inserting ApoE Peptides

27 Feb 2023 21:41:23,953 INFO : 25% Done

27 Feb 2023 21:41:24,025 INFO : 46% Done

27 Feb 2023 21:41:24,101 INFO : 65% Done

27 Feb 2023 21:41:24,166 INFO : 80% Done

27 Feb 2023 21:41:24,223 INFO : 98% Done

27 Feb 2023 21:41:24,276 DEBUG: Total peptides inserted: 5

27 Feb 2023 21:41:24,277 INFO : Done parsing Skyline document.

27 Feb 2023 21:41:24,278 INFO : Creating and populating temp tables for Proportion values

27 Feb 2023 21:41:24,330 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

27 Feb 2023 21:41:24,341 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

27 Feb 2023 21:41:24,345 INFO : Cleaning up temp tables

27 Feb 2023 21:41:24,577 INFO : Completed import of Skyline document from 220405_ApoE_HoofnagleLab_Analyte Free Matrix_Day 2.sky.zip

27 Feb 2023 21:41:24,579 INFO : 100% Done

27 Feb 2023 21:41:24,582 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/01_Method%20development/xar/experiments_and_runs.xar.exploded/Run146975/220405_ApoE_HoofnagleLab_Analyte%20Free%20Matrix_Day%202.sky.zip into the system

27 Feb 2023 21:41:24,582 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/01_Method%20development/xar/experiments_and_runs.xar.exploded/Run146975/220405_ApoE_HoofnagleLab_Analyte%20Free%20Matrix_Day%202/220405_ApoE_HoofnagleLab_Analyte%20Free%20Matrix_Day%202.skyd into the system

27 Feb 2023 21:41:24,582 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/01_Method%20development/xar/experiments_and_runs.xar.exploded/Run146975/220405_ApoE_HoofnagleLab_Analyte%20Free%20Matrix_Day%202/220405_ApoE_HoofnagleLab_Analyte%20Free%20Matrix_Day%202.skyd into the system

27 Feb 2023 21:41:24,582 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/01_Method%20development/xar/experiments_and_runs.xar.exploded/Run146976/220429_ApoE_HoofnagleLab_Matrix%20effect_Internal%20standard%20Buffer.sky.zip into the system

27 Feb 2023 21:41:24,584 INFO : Starting import from 220429_ApoE_HoofnagleLab_Matrix effect_Internal standard Buffer.sky.zip

27 Feb 2023 21:41:24,585 INFO : Starting to import Skyline document from 220429_ApoE_HoofnagleLab_Matrix effect_Internal standard Buffer.sky.zip

27 Feb 2023 21:41:24,586 INFO : Expanding 220429_ApoE_HoofnagleLab_Matrix effect_Internal standard Buffer.skyd

27 Feb 2023 21:41:24,605 INFO : Expanding 220429_ApoE_HoofnagleLab_Matrix effect_Internal standard Buffer.sky.view

27 Feb 2023 21:41:24,605 INFO : Expanding 220429_ApoE_HoofnagleLab_Matrix effect_Internal standard Buffer.sky

27 Feb 2023 21:41:24,608 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13

27 Feb 2023 21:41:24,611 INFO : 5% Done

27 Feb 2023 21:41:24,648 DEBUG: Starting to load chromatogram headers

27 Feb 2023 21:41:24,648 DEBUG: Done loading chromatogram headers

27 Feb 2023 21:41:24,799 INFO : Inserting ApoE Peptides

27 Feb 2023 21:41:24,816 INFO : 24% Done

27 Feb 2023 21:41:24,915 INFO : 45% Done

27 Feb 2023 21:41:25,022 INFO : 63% Done

27 Feb 2023 21:41:25,115 INFO : 80% Done

27 Feb 2023 21:41:25,210 INFO : 98% Done

27 Feb 2023 21:41:25,288 DEBUG: Total peptides inserted: 5

27 Feb 2023 21:41:25,289 INFO : Done parsing Skyline document.

27 Feb 2023 21:41:25,290 INFO : Creating and populating temp tables for Proportion values

27 Feb 2023 21:41:25,350 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

27 Feb 2023 21:41:25,367 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

27 Feb 2023 21:41:25,374 INFO : Cleaning up temp tables

27 Feb 2023 21:41:25,628 INFO : Completed import of Skyline document from 220429_ApoE_HoofnagleLab_Matrix effect_Internal standard Buffer.sky.zip

27 Feb 2023 21:41:25,630 INFO : 100% Done

27 Feb 2023 21:41:25,633 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/01_Method%20development/xar/experiments_and_runs.xar.exploded/Run146976/220429_ApoE_HoofnagleLab_Matrix%20effect_Internal%20standard%20Buffer.sky.zip into the system

27 Feb 2023 21:41:25,633 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/01_Method%20development/xar/experiments_and_runs.xar.exploded/Run146976/220429_ApoE_HoofnagleLab_Matrix%20effect_Internal%20standard%20Buffer/220429_ApoE_HoofnagleLab_Matrix%20effect_Internal%20standard%20Buffer.skyd into the system

27 Feb 2023 21:41:25,633 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/01_Method%20development/xar/experiments_and_runs.xar.exploded/Run146976/220429_ApoE_HoofnagleLab_Matrix%20effect_Internal%20standard%20Buffer/220429_ApoE_HoofnagleLab_Matrix%20effect_Internal%20standard%20Buffer.skyd into the system

27 Feb 2023 21:41:25,633 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/01_Method%20development/xar/experiments_and_runs.xar.exploded/Run146977/220429_ApoE_HoofnagleLab_Matrix%20effect_Calibrator%20preparation.sky.zip into the system

27 Feb 2023 21:41:25,635 INFO : Starting import from 220429_ApoE_HoofnagleLab_Matrix effect_Calibrator preparation.sky.zip

27 Feb 2023 21:41:25,637 INFO : Starting to import Skyline document from 220429_ApoE_HoofnagleLab_Matrix effect_Calibrator preparation.sky.zip

27 Feb 2023 21:41:25,637 INFO : Expanding 220429_ApoE_HoofnagleLab_Matrix effect_Calibrator preparation.skyd

27 Feb 2023 21:41:25,650 INFO : Expanding 220429_ApoE_HoofnagleLab_Matrix effect_Calibrator preparation.sky.view

27 Feb 2023 21:41:25,650 INFO : Expanding 220429_ApoE_HoofnagleLab_Matrix effect_Calibrator preparation.sky

27 Feb 2023 21:41:25,652 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13

27 Feb 2023 21:41:25,655 INFO : 6% Done

27 Feb 2023 21:41:25,675 DEBUG: Starting to load chromatogram headers

27 Feb 2023 21:41:25,675 DEBUG: Done loading chromatogram headers

27 Feb 2023 21:41:25,814 INFO : Inserting ApoE Peptides

27 Feb 2023 21:41:25,824 INFO : 24% Done

27 Feb 2023 21:41:25,890 INFO : 46% Done

27 Feb 2023 21:41:25,961 INFO : 64% Done

27 Feb 2023 21:41:26,023 INFO : 81% Done

27 Feb 2023 21:41:26,086 INFO : 98% Done

27 Feb 2023 21:41:26,139 DEBUG: Total peptides inserted: 5

27 Feb 2023 21:41:26,139 INFO : Done parsing Skyline document.

27 Feb 2023 21:41:26,140 INFO : Creating and populating temp tables for Proportion values

27 Feb 2023 21:41:26,193 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

27 Feb 2023 21:41:26,205 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

27 Feb 2023 21:41:26,209 INFO : Cleaning up temp tables

27 Feb 2023 21:41:26,458 INFO : Completed import of Skyline document from 220429_ApoE_HoofnagleLab_Matrix effect_Calibrator preparation.sky.zip

27 Feb 2023 21:41:26,460 INFO : 100% Done

27 Feb 2023 21:41:26,463 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/01_Method%20development/xar/experiments_and_runs.xar.exploded/Run146977/220429_ApoE_HoofnagleLab_Matrix%20effect_Calibrator%20preparation.sky.zip into the system

27 Feb 2023 21:41:26,463 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/01_Method%20development/xar/experiments_and_runs.xar.exploded/Run146977/220429_ApoE_HoofnagleLab_Matrix%20effect_Calibrator%20preparation/220429_ApoE_HoofnagleLab_Matrix%20effect_Calibrator%20preparation.skyd into the system

27 Feb 2023 21:41:26,463 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/01_Method%20development/xar/experiments_and_runs.xar.exploded/Run146977/220429_ApoE_HoofnagleLab_Matrix%20effect_Calibrator%20preparation/220429_ApoE_HoofnagleLab_Matrix%20effect_Calibrator%20preparation.skyd into the system

27 Feb 2023 21:41:26,478 INFO : Done importing xar

27 Feb 2023 21:41:26,479 INFO : Loading pages and webpart properties

27 Feb 2023 21:41:26,551 INFO : Done importing 4 page(s) with 6 webpart(s)

27 Feb 2023 21:41:26,551 INFO : Loading File Browser config

27 Feb 2023 21:41:26,551 INFO : Done importing File Browser config

27 Feb 2023 21:41:26,552 INFO : Starting Sample Status Data import

27 Feb 2023 21:41:26,552 INFO : No sample types XAR file to process.

27 Feb 2023 21:41:26,552 INFO : Finished importing Sample Status Data

27 Feb 2023 21:41:26,556 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType

27 Feb 2023 21:41:26,557 INFO : A row containing [Description: 'null', Color: '800000', Name: 'Reagent Change'] values already exists. Skipping

27 Feb 2023 21:41:26,558 INFO : A row containing [Description: 'null', Color: 'FF0000', Name: 'Instrumentation Change'] values already exists. Skipping

27 Feb 2023 21:41:26,558 INFO : A row containing [Description: 'null', Color: '0000FF', Name: 'Technician Change'] values already exists. Skipping

27 Feb 2023 21:41:26,558 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType

27 Feb 2023 21:41:26,558 INFO : Done importing folder archive for 01_Method development

27 Feb 2023 21:41:26,596 INFO : New folder created with inherited permissions: /Panorama Public/2023/TPAD2.0 - ApoE Assay Paper/02_Method validation

27 Feb 2023 21:41:26,596 INFO : Loading folder archive for 02_Method validation

27 Feb 2023 21:41:26,596 DEBUG: [/Panorama Public/2023/TPAD2.0 - ApoE Assay Paper/02_Method validation] Importing folder properties from: /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0 - ApoE Assay Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method validation

27 Feb 2023 21:41:26,597 INFO : Loading folder properties (folder type, settings and active modules)

27 Feb 2023 21:41:26,597 DEBUG: [/Panorama Public/2023/TPAD2.0 - ApoE Assay Paper/02_Method validation] Folder type: Targeted MS

27 Feb 2023 21:41:26,597 DEBUG: [/Panorama Public/2023/TPAD2.0 - ApoE Assay Paper/02_Method validation] Active modules: Internal, API, Pipeline, Wiki, MS2, TargetedMS, Core, Issues, Experiment, Assay, FileContent, PanoramaPublic, Search, Announcements, Query

27 Feb 2023 21:41:26,643 INFO : Done importing folder properties (folder type, settings and active modules)

27 Feb 2023 21:41:26,644 INFO : Loading container specific module properties

27 Feb 2023 21:41:26,652 INFO : Done importing container specific module properties

27 Feb 2023 21:41:26,653 INFO : Loading etl definitions

27 Feb 2023 21:41:26,654 INFO : Loading wikis

27 Feb 2023 21:41:26,655 INFO : 0 wikis imported

27 Feb 2023 21:41:26,655 INFO : Done importing wikis

27 Feb 2023 21:41:26,655 INFO : Starting to copy files

27 Feb 2023 21:41:27,491 INFO : Copied 570 files

27 Feb 2023 21:41:27,491 INFO : Ensuring exp.data rows exist for imported files

27 Feb 2023 21:41:29,649 INFO : Starting Sample Type and Data Class import

27 Feb 2023 21:41:29,649 INFO : No types XAR file to process.

27 Feb 2023 21:41:29,649 INFO : Finished importing Sample Types and Data Classes

27 Feb 2023 21:41:29,650 INFO : Loading xar

27 Feb 2023 21:41:30,061 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip'

27 Feb 2023 21:41:30,062 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip.Core'

27 Feb 2023 21:41:30,064 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip.Output'

27 Feb 2023 21:41:30,064 DEBUG: Protocol import complete

27 Feb 2023 21:41:30,072 DEBUG: Protocol action set import complete

27 Feb 2023 21:41:30,079 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip'

27 Feb 2023 21:41:30,085 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11183:437d214b-5881-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,088 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11183:437d215c-5881-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,088 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip.Core'

27 Feb 2023 21:41:30,090 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip.Output'

27 Feb 2023 21:41:30,090 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11183:437d2178-5881-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,094 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip'

27 Feb 2023 21:41:30,098 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11183:bc630fa9-5882-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,101 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11183:bc630fbb-5882-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,101 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip.Core'

27 Feb 2023 21:41:30,102 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip.Output'

27 Feb 2023 21:41:30,103 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11183:bc630fc5-5882-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,106 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip'

27 Feb 2023 21:41:30,110 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11183:bc6314a0-5882-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,113 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11183:bc6314af-5882-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,113 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip.Core'

27 Feb 2023 21:41:30,115 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip.Output'

27 Feb 2023 21:41:30,115 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11183:bc6314de-5882-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,118 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip'

27 Feb 2023 21:41:30,122 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11183:bc631bad-5882-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,125 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11183:bc631bbc-5882-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,125 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip.Core'

27 Feb 2023 21:41:30,127 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip.Output'

27 Feb 2023 21:41:30,127 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11183:bc631bc5-5882-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,130 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip'

27 Feb 2023 21:41:30,134 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11183:bc6325cd-5882-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,137 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11183:bc6325de-5882-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,137 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip.Core'

27 Feb 2023 21:41:30,139 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip.Output'

27 Feb 2023 21:41:30,139 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11183:bc6325e5-5882-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,143 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip'

27 Feb 2023 21:41:30,146 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11183:bc632831-5882-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,149 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11183:bc632842-5882-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,149 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip.Core'

27 Feb 2023 21:41:30,151 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip.Output'

27 Feb 2023 21:41:30,151 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11183:bc632855-5882-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,155 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip'

27 Feb 2023 21:41:30,159 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11183:3033f138-5889-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,162 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11183:3033f149-5889-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,162 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip.Core'

27 Feb 2023 21:41:30,163 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip.Output'

27 Feb 2023 21:41:30,164 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11183:3033f184-5889-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,167 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip'

27 Feb 2023 21:41:30,171 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11183:3033f8d4-5889-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,174 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11183:3033f8e9-5889-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,174 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip.Core'

27 Feb 2023 21:41:30,175 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip.Output'

27 Feb 2023 21:41:30,175 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11183:3033f901-5889-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,179 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip'

27 Feb 2023 21:41:30,182 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11183:c063670e-588b-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,185 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11183:c0636725-588b-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,185 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip.Core'

27 Feb 2023 21:41:30,187 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip.Output'

27 Feb 2023 21:41:30,187 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11183:c0636736-588b-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,190 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip'

27 Feb 2023 21:41:30,194 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11183:c0636b95-588b-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,197 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11183:c0636bc7-588b-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,197 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip.Core'

27 Feb 2023 21:41:30,199 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip.Output'

27 Feb 2023 21:41:30,199 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11183:c0636bd0-588b-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,202 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip'

27 Feb 2023 21:41:30,205 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11183:36425f96-588d-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,207 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11183:36425fb0-588d-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,207 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip.Core'

27 Feb 2023 21:41:30,209 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip.Output'

27 Feb 2023 21:41:30,209 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11183:36425fc1-588d-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,212 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip'

27 Feb 2023 21:41:30,216 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11183:36426d9b-588d-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,219 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11183:36426dac-588d-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,219 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip.Core'

27 Feb 2023 21:41:30,220 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip.Output'

27 Feb 2023 21:41:30,221 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11183:36426dbb-588d-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,224 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip'

27 Feb 2023 21:41:30,228 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11183:3642729b-588d-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,231 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11183:364272aa-588d-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,231 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip.Core'

27 Feb 2023 21:41:30,233 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip.Output'

27 Feb 2023 21:41:30,233 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11183:364272cf-588d-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,236 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip'

27 Feb 2023 21:41:30,240 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11183:364278f6-588d-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,243 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11183:36427905-588d-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,243 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip.Core'

27 Feb 2023 21:41:30,244 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip.Output'

27 Feb 2023 21:41:30,245 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11183:3642790f-588d-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,248 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip'

27 Feb 2023 21:41:30,252 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11183:36427d14-588d-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,255 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11183:36427d25-588d-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,255 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip.Core'

27 Feb 2023 21:41:30,256 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11183:TargetedMS.ImportSkyZip.Output'

27 Feb 2023 21:41:30,257 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11183:36427d31-588d-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:30,258 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run146978/220524_ApoE_HoofnagleLab_Precision_Day1.sky.zip into the system

27 Feb 2023 21:41:30,259 INFO : Starting import from 220524_ApoE_HoofnagleLab_Precision_Day1.sky.zip

27 Feb 2023 21:41:30,264 INFO : Starting to import Skyline document from 220524_ApoE_HoofnagleLab_Precision_Day1.sky.zip

27 Feb 2023 21:41:30,266 INFO : Expanding 220524_ApoE_HoofnagleLab_Precision_Day1.skyd

27 Feb 2023 21:41:30,308 INFO : Expanding 220524_ApoE_HoofnagleLab_Precision_Day1.sky.view

27 Feb 2023 21:41:30,309 INFO : Expanding 220524_ApoE_HoofnagleLab_Precision_Day1.sky

27 Feb 2023 21:41:30,317 INFO : 5% Done

27 Feb 2023 21:41:30,379 DEBUG: Starting to load chromatogram headers

27 Feb 2023 21:41:30,380 DEBUG: Done loading chromatogram headers

27 Feb 2023 21:41:30,549 INFO : Inserting ApoE Peptides

27 Feb 2023 21:41:30,562 INFO : 24% Done

27 Feb 2023 21:41:30,630 INFO : 45% Done

27 Feb 2023 21:41:30,699 INFO : 64% Done

27 Feb 2023 21:41:30,761 INFO : 80% Done

27 Feb 2023 21:41:30,827 INFO : 98% Done

27 Feb 2023 21:41:30,878 DEBUG: Total peptides inserted: 5

27 Feb 2023 21:41:30,879 INFO : Done parsing Skyline document.

27 Feb 2023 21:41:30,880 INFO : Creating and populating temp tables for Proportion values

27 Feb 2023 21:41:30,937 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

27 Feb 2023 21:41:30,949 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

27 Feb 2023 21:41:30,954 INFO : Cleaning up temp tables

27 Feb 2023 21:41:31,231 INFO : Completed import of Skyline document from 220524_ApoE_HoofnagleLab_Precision_Day1.sky.zip

27 Feb 2023 21:41:31,233 INFO : 100% Done

27 Feb 2023 21:41:31,238 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run146978/220524_ApoE_HoofnagleLab_Precision_Day1.sky.zip into the system

27 Feb 2023 21:41:31,238 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run146978/220524_ApoE_HoofnagleLab_Precision_Day1/220524_ApoE_HoofnagleLab_Precision_Day1.skyd into the system

27 Feb 2023 21:41:31,238 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run146978/220524_ApoE_HoofnagleLab_Precision_Day1/220524_ApoE_HoofnagleLab_Precision_Day1.skyd into the system

27 Feb 2023 21:41:31,238 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run146979/220526_ApoE_HoofnagleLab_Precision_Day2.sky.zip into the system

27 Feb 2023 21:41:31,240 INFO : Starting import from 220526_ApoE_HoofnagleLab_Precision_Day2.sky.zip

27 Feb 2023 21:41:31,244 INFO : Starting to import Skyline document from 220526_ApoE_HoofnagleLab_Precision_Day2.sky.zip

27 Feb 2023 21:41:31,245 INFO : Expanding 220526_ApoE_HoofnagleLab_Precision_Day2.skyd

27 Feb 2023 21:41:31,257 INFO : Expanding 220526_ApoE_HoofnagleLab_Precision_Day2.sky.view

27 Feb 2023 21:41:31,258 INFO : Expanding 220526_ApoE_HoofnagleLab_Precision_Day2.sky

27 Feb 2023 21:41:31,266 INFO : 5% Done

27 Feb 2023 21:41:31,285 DEBUG: Starting to load chromatogram headers

27 Feb 2023 21:41:31,285 DEBUG: Done loading chromatogram headers

27 Feb 2023 21:41:31,465 INFO : Inserting ApoE Peptides

27 Feb 2023 21:41:31,482 INFO : 24% Done

27 Feb 2023 21:41:31,569 INFO : 45% Done

27 Feb 2023 21:41:31,656 INFO : 64% Done

27 Feb 2023 21:41:31,737 INFO : 80% Done

27 Feb 2023 21:41:31,811 INFO : 98% Done

27 Feb 2023 21:41:31,864 DEBUG: Total peptides inserted: 5

27 Feb 2023 21:41:31,865 INFO : Done parsing Skyline document.

27 Feb 2023 21:41:31,866 INFO : Creating and populating temp tables for Proportion values

27 Feb 2023 21:41:31,934 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

27 Feb 2023 21:41:31,947 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

27 Feb 2023 21:41:31,951 INFO : Cleaning up temp tables

27 Feb 2023 21:41:32,199 INFO : Completed import of Skyline document from 220526_ApoE_HoofnagleLab_Precision_Day2.sky.zip

27 Feb 2023 21:41:32,202 INFO : 100% Done

27 Feb 2023 21:41:32,206 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run146979/220526_ApoE_HoofnagleLab_Precision_Day2.sky.zip into the system

27 Feb 2023 21:41:32,206 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run146979/220526_ApoE_HoofnagleLab_Precision_Day2/220526_ApoE_HoofnagleLab_Precision_Day2.skyd into the system

27 Feb 2023 21:41:32,207 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run146979/220526_ApoE_HoofnagleLab_Precision_Day2/220526_ApoE_HoofnagleLab_Precision_Day2.skyd into the system

27 Feb 2023 21:41:32,207 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run146980/220527_ApoE_HoofnagleLab_Precision_Day3.sky.zip into the system

27 Feb 2023 21:41:32,208 INFO : Starting import from 220527_ApoE_HoofnagleLab_Precision_Day3.sky.zip

27 Feb 2023 21:41:32,209 INFO : Starting to import Skyline document from 220527_ApoE_HoofnagleLab_Precision_Day3.sky.zip

27 Feb 2023 21:41:32,210 INFO : Expanding 220527_ApoE_HoofnagleLab_Precision_Day3.skyd

27 Feb 2023 21:41:32,223 INFO : Expanding 220527_ApoE_HoofnagleLab_Precision_Day3.sky.view

27 Feb 2023 21:41:32,223 INFO : Expanding 220527_ApoE_HoofnagleLab_Precision_Day3.sky

27 Feb 2023 21:41:32,230 INFO : 5% Done

27 Feb 2023 21:41:32,249 DEBUG: Starting to load chromatogram headers

27 Feb 2023 21:41:32,249 DEBUG: Done loading chromatogram headers

27 Feb 2023 21:41:32,390 INFO : Inserting ApoE Peptides

27 Feb 2023 21:41:32,400 INFO : 24% Done

27 Feb 2023 21:41:32,463 INFO : 45% Done

27 Feb 2023 21:41:32,531 INFO : 64% Done

27 Feb 2023 21:41:32,592 INFO : 80% Done

27 Feb 2023 21:41:32,653 INFO : 98% Done

27 Feb 2023 21:41:32,704 DEBUG: Total peptides inserted: 5

27 Feb 2023 21:41:32,705 INFO : Done parsing Skyline document.

27 Feb 2023 21:41:32,705 INFO : Creating and populating temp tables for Proportion values

27 Feb 2023 21:41:32,764 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

27 Feb 2023 21:41:32,776 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

27 Feb 2023 21:41:32,780 INFO : Cleaning up temp tables

27 Feb 2023 21:41:33,016 INFO : Completed import of Skyline document from 220527_ApoE_HoofnagleLab_Precision_Day3.sky.zip

27 Feb 2023 21:41:33,018 INFO : 100% Done

27 Feb 2023 21:41:33,021 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run146980/220527_ApoE_HoofnagleLab_Precision_Day3.sky.zip into the system

27 Feb 2023 21:41:33,021 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run146980/220527_ApoE_HoofnagleLab_Precision_Day3/220527_ApoE_HoofnagleLab_Precision_Day3.skyd into the system

27 Feb 2023 21:41:33,021 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run146980/220527_ApoE_HoofnagleLab_Precision_Day3/220527_ApoE_HoofnagleLab_Precision_Day3.skyd into the system

27 Feb 2023 21:41:33,021 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run146982/220531_ApoE_HoofnagleLab_Precision_Day4.sky.zip into the system

27 Feb 2023 21:41:33,022 INFO : Starting import from 220531_ApoE_HoofnagleLab_Precision_Day4.sky.zip

27 Feb 2023 21:41:33,024 INFO : Starting to import Skyline document from 220531_ApoE_HoofnagleLab_Precision_Day4.sky.zip

27 Feb 2023 21:41:33,025 INFO : Expanding 220531_ApoE_HoofnagleLab_Precision_Day4.skyd

27 Feb 2023 21:41:33,038 INFO : Expanding 220531_ApoE_HoofnagleLab_Precision_Day4.sky.view

27 Feb 2023 21:41:33,039 INFO : Expanding 220531_ApoE_HoofnagleLab_Precision_Day4.sky

27 Feb 2023 21:41:33,044 INFO : 5% Done

27 Feb 2023 21:41:33,063 DEBUG: Starting to load chromatogram headers

27 Feb 2023 21:41:33,064 DEBUG: Done loading chromatogram headers

27 Feb 2023 21:41:33,208 INFO : Inserting ApoE Peptides

27 Feb 2023 21:41:33,218 INFO : 24% Done

27 Feb 2023 21:41:33,284 INFO : 45% Done

27 Feb 2023 21:41:33,352 INFO : 64% Done

27 Feb 2023 21:41:33,412 INFO : 80% Done

27 Feb 2023 21:41:33,475 INFO : 98% Done

27 Feb 2023 21:41:33,527 DEBUG: Total peptides inserted: 5

27 Feb 2023 21:41:33,527 INFO : Done parsing Skyline document.

27 Feb 2023 21:41:33,528 INFO : Creating and populating temp tables for Proportion values

27 Feb 2023 21:41:33,587 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

27 Feb 2023 21:41:33,606 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

27 Feb 2023 21:41:33,610 INFO : Cleaning up temp tables

27 Feb 2023 21:41:33,877 INFO : Completed import of Skyline document from 220531_ApoE_HoofnagleLab_Precision_Day4.sky.zip

27 Feb 2023 21:41:33,879 INFO : 100% Done

27 Feb 2023 21:41:33,882 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run146982/220531_ApoE_HoofnagleLab_Precision_Day4.sky.zip into the system

27 Feb 2023 21:41:33,882 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run146982/220531_ApoE_HoofnagleLab_Precision_Day4/220531_ApoE_HoofnagleLab_Precision_Day4.skyd into the system

27 Feb 2023 21:41:33,883 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run146982/220531_ApoE_HoofnagleLab_Precision_Day4/220531_ApoE_HoofnagleLab_Precision_Day4.skyd into the system

27 Feb 2023 21:41:33,883 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run146983/220601_ApoE_HoofnagleLab_Precision_Day5.sky.zip into the system

27 Feb 2023 21:41:33,884 INFO : Starting import from 220601_ApoE_HoofnagleLab_Precision_Day5.sky.zip

27 Feb 2023 21:41:33,886 INFO : Starting to import Skyline document from 220601_ApoE_HoofnagleLab_Precision_Day5.sky.zip

27 Feb 2023 21:41:33,886 INFO : Expanding 220601_ApoE_HoofnagleLab_Precision_Day5.skyd

27 Feb 2023 21:41:33,898 INFO : Expanding 220601_ApoE_HoofnagleLab_Precision_Day5.sky.view

27 Feb 2023 21:41:33,899 INFO : Expanding 220601_ApoE_HoofnagleLab_Precision_Day5.sky

27 Feb 2023 21:41:33,901 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13

27 Feb 2023 21:41:33,904 INFO : 5% Done

27 Feb 2023 21:41:33,924 DEBUG: Starting to load chromatogram headers

27 Feb 2023 21:41:33,924 DEBUG: Done loading chromatogram headers

27 Feb 2023 21:41:34,069 INFO : Inserting ApoE Peptides

27 Feb 2023 21:41:34,081 INFO : 24% Done

27 Feb 2023 21:41:34,151 INFO : 45% Done

27 Feb 2023 21:41:34,223 INFO : 64% Done

27 Feb 2023 21:41:34,287 INFO : 81% Done

27 Feb 2023 21:41:34,356 INFO : 98% Done

27 Feb 2023 21:41:34,411 DEBUG: Total peptides inserted: 5

27 Feb 2023 21:41:34,411 INFO : Done parsing Skyline document.

27 Feb 2023 21:41:34,412 INFO : Creating and populating temp tables for Proportion values

27 Feb 2023 21:41:34,469 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

27 Feb 2023 21:41:34,489 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

27 Feb 2023 21:41:34,494 INFO : Cleaning up temp tables

27 Feb 2023 21:41:34,730 INFO : Completed import of Skyline document from 220601_ApoE_HoofnagleLab_Precision_Day5.sky.zip

27 Feb 2023 21:41:34,732 INFO : 100% Done

27 Feb 2023 21:41:34,735 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run146983/220601_ApoE_HoofnagleLab_Precision_Day5.sky.zip into the system

27 Feb 2023 21:41:34,735 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run146983/220601_ApoE_HoofnagleLab_Precision_Day5/220601_ApoE_HoofnagleLab_Precision_Day5.skyd into the system

27 Feb 2023 21:41:34,735 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run146983/220601_ApoE_HoofnagleLab_Precision_Day5/220601_ApoE_HoofnagleLab_Precision_Day5.skyd into the system

27 Feb 2023 21:41:34,735 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run146984/220524_ApoE_HoofnagleLab_Parallelism_Day1.sky.zip into the system

27 Feb 2023 21:41:34,736 INFO : Starting import from 220524_ApoE_HoofnagleLab_Parallelism_Day1.sky.zip

27 Feb 2023 21:41:34,738 INFO : Starting to import Skyline document from 220524_ApoE_HoofnagleLab_Parallelism_Day1.sky.zip

27 Feb 2023 21:41:34,739 INFO : Expanding 220524_ApoE_HoofnagleLab_Parallelism_Day1.skyd

27 Feb 2023 21:41:34,766 INFO : Expanding 220524_ApoE_HoofnagleLab_Parallelism_Day1.sky.view

27 Feb 2023 21:41:34,766 INFO : Expanding 220524_ApoE_HoofnagleLab_Parallelism_Day1.sky

27 Feb 2023 21:41:34,773 INFO : 5% Done

27 Feb 2023 21:41:34,812 DEBUG: Starting to load chromatogram headers

27 Feb 2023 21:41:34,813 DEBUG: Done loading chromatogram headers

27 Feb 2023 21:41:34,978 INFO : Inserting ApoE Peptides

27 Feb 2023 21:41:34,997 INFO : 24% Done

27 Feb 2023 21:41:35,121 INFO : 45% Done

27 Feb 2023 21:41:35,268 INFO : 63% Done

27 Feb 2023 21:41:35,402 INFO : 80% Done

27 Feb 2023 21:41:35,543 INFO : 98% Done

27 Feb 2023 21:41:35,656 DEBUG: Total peptides inserted: 5

27 Feb 2023 21:41:35,657 INFO : Done parsing Skyline document.

27 Feb 2023 21:41:35,658 INFO : Creating and populating temp tables for Proportion values

27 Feb 2023 21:41:35,723 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

27 Feb 2023 21:41:35,759 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

27 Feb 2023 21:41:35,769 INFO : Cleaning up temp tables

27 Feb 2023 21:41:36,034 INFO : Completed import of Skyline document from 220524_ApoE_HoofnagleLab_Parallelism_Day1.sky.zip

27 Feb 2023 21:41:36,036 INFO : 100% Done

27 Feb 2023 21:41:36,039 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run146984/220524_ApoE_HoofnagleLab_Parallelism_Day1.sky.zip into the system

27 Feb 2023 21:41:36,039 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run146984/220524_ApoE_HoofnagleLab_Parallelism_Day1/220524_ApoE_HoofnagleLab_Parallelism_Day1.skyd into the system

27 Feb 2023 21:41:36,039 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run146984/220524_ApoE_HoofnagleLab_Parallelism_Day1/220524_ApoE_HoofnagleLab_Parallelism_Day1.skyd into the system

27 Feb 2023 21:41:36,040 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run147000/220526_ApoE_HoofnagleLab_Parallelism_Day2.sky.zip into the system

27 Feb 2023 21:41:36,040 INFO : Starting import from 220526_ApoE_HoofnagleLab_Parallelism_Day2.sky.zip

27 Feb 2023 21:41:36,042 INFO : Starting to import Skyline document from 220526_ApoE_HoofnagleLab_Parallelism_Day2.sky.zip

27 Feb 2023 21:41:36,043 INFO : Expanding 220526_ApoE_HoofnagleLab_Parallelism_Day2.skyd

27 Feb 2023 21:41:36,074 INFO : Expanding 220526_ApoE_HoofnagleLab_Parallelism_Day2.sky.view

27 Feb 2023 21:41:36,074 INFO : Expanding 220526_ApoE_HoofnagleLab_Parallelism_Day2.sky

27 Feb 2023 21:41:36,083 INFO : 5% Done

27 Feb 2023 21:41:36,123 DEBUG: Starting to load chromatogram headers

27 Feb 2023 21:41:36,124 DEBUG: Done loading chromatogram headers

27 Feb 2023 21:41:36,311 INFO : Inserting ApoE Peptides

27 Feb 2023 21:41:36,331 INFO : 24% Done

27 Feb 2023 21:41:36,464 INFO : 45% Done

27 Feb 2023 21:41:36,612 INFO : 63% Done

27 Feb 2023 21:41:36,746 INFO : 80% Done

27 Feb 2023 21:41:36,879 INFO : 98% Done

27 Feb 2023 21:41:36,983 DEBUG: Total peptides inserted: 5

27 Feb 2023 21:41:36,984 INFO : Done parsing Skyline document.

27 Feb 2023 21:41:36,984 INFO : Creating and populating temp tables for Proportion values

27 Feb 2023 21:41:37,048 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

27 Feb 2023 21:41:37,073 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

27 Feb 2023 21:41:37,082 INFO : Cleaning up temp tables

27 Feb 2023 21:41:37,332 INFO : Completed import of Skyline document from 220526_ApoE_HoofnagleLab_Parallelism_Day2.sky.zip

27 Feb 2023 21:41:37,334 INFO : 100% Done

27 Feb 2023 21:41:37,337 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run147000/220526_ApoE_HoofnagleLab_Parallelism_Day2.sky.zip into the system

27 Feb 2023 21:41:37,337 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run147000/220526_ApoE_HoofnagleLab_Parallelism_Day2/220526_ApoE_HoofnagleLab_Parallelism_Day2.skyd into the system

27 Feb 2023 21:41:37,337 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run147000/220526_ApoE_HoofnagleLab_Parallelism_Day2/220526_ApoE_HoofnagleLab_Parallelism_Day2.skyd into the system

27 Feb 2023 21:41:37,337 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run147001/220531_ApoE_HoofnagleLab_Parallelism_Day3.sky.zip into the system

27 Feb 2023 21:41:37,338 INFO : Starting import from 220531_ApoE_HoofnagleLab_Parallelism_Day3.sky.zip

27 Feb 2023 21:41:37,340 INFO : Starting to import Skyline document from 220531_ApoE_HoofnagleLab_Parallelism_Day3.sky.zip

27 Feb 2023 21:41:37,341 INFO : Expanding 220531_ApoE_HoofnagleLab_Parallelism_Day3.skyd

27 Feb 2023 21:41:37,367 INFO : Expanding 220531_ApoE_HoofnagleLab_Parallelism_Day3.sky.view

27 Feb 2023 21:41:37,368 INFO : Expanding 220531_ApoE_HoofnagleLab_Parallelism_Day3.sky

27 Feb 2023 21:41:37,375 INFO : 5% Done

27 Feb 2023 21:41:37,413 DEBUG: Starting to load chromatogram headers

27 Feb 2023 21:41:37,414 DEBUG: Done loading chromatogram headers

27 Feb 2023 21:41:37,586 INFO : Inserting ApoE Peptides

27 Feb 2023 21:41:37,605 INFO : 24% Done

27 Feb 2023 21:41:37,728 INFO : 45% Done

27 Feb 2023 21:41:37,864 INFO : 63% Done

27 Feb 2023 21:41:37,985 INFO : 80% Done

27 Feb 2023 21:41:38,107 INFO : 98% Done

27 Feb 2023 21:41:38,211 DEBUG: Total peptides inserted: 5

27 Feb 2023 21:41:38,212 INFO : Done parsing Skyline document.

27 Feb 2023 21:41:38,212 INFO : Creating and populating temp tables for Proportion values

27 Feb 2023 21:41:38,273 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

27 Feb 2023 21:41:38,298 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

27 Feb 2023 21:41:38,307 INFO : Cleaning up temp tables

27 Feb 2023 21:41:38,555 INFO : Completed import of Skyline document from 220531_ApoE_HoofnagleLab_Parallelism_Day3.sky.zip

27 Feb 2023 21:41:38,557 INFO : 100% Done

27 Feb 2023 21:41:38,560 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run147001/220531_ApoE_HoofnagleLab_Parallelism_Day3.sky.zip into the system

27 Feb 2023 21:41:38,560 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run147001/220531_ApoE_HoofnagleLab_Parallelism_Day3/220531_ApoE_HoofnagleLab_Parallelism_Day3.skyd into the system

27 Feb 2023 21:41:38,560 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run147001/220531_ApoE_HoofnagleLab_Parallelism_Day3/220531_ApoE_HoofnagleLab_Parallelism_Day3.skyd into the system

27 Feb 2023 21:41:38,560 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run147002/220524_ApoE_HoofnagleLab_LLOQ_Day1.sky.zip into the system

27 Feb 2023 21:41:38,561 INFO : Starting import from 220524_ApoE_HoofnagleLab_LLOQ_Day1.sky.zip

27 Feb 2023 21:41:38,563 INFO : Starting to import Skyline document from 220524_ApoE_HoofnagleLab_LLOQ_Day1.sky.zip

27 Feb 2023 21:41:38,564 INFO : Expanding 220524_ApoE_HoofnagleLab_LLOQ_Day1.skyd

27 Feb 2023 21:41:38,573 INFO : Expanding 220524_ApoE_HoofnagleLab_LLOQ_Day1.sky.view

27 Feb 2023 21:41:38,573 INFO : Expanding 220524_ApoE_HoofnagleLab_LLOQ_Day1.sky

27 Feb 2023 21:41:38,578 INFO : 5% Done

27 Feb 2023 21:41:38,592 DEBUG: Starting to load chromatogram headers

27 Feb 2023 21:41:38,592 DEBUG: Done loading chromatogram headers

27 Feb 2023 21:41:38,734 INFO : Inserting ApoE Peptides

27 Feb 2023 21:41:38,742 INFO : 25% Done

27 Feb 2023 21:41:38,787 INFO : 46% Done

27 Feb 2023 21:41:38,835 INFO : 64% Done

27 Feb 2023 21:41:38,881 INFO : 81% Done

27 Feb 2023 21:41:38,927 INFO : 98% Done

27 Feb 2023 21:41:38,964 DEBUG: Total peptides inserted: 5

27 Feb 2023 21:41:38,965 INFO : Done parsing Skyline document.

27 Feb 2023 21:41:38,966 INFO : Creating and populating temp tables for Proportion values

27 Feb 2023 21:41:39,019 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

27 Feb 2023 21:41:39,030 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

27 Feb 2023 21:41:39,034 INFO : Cleaning up temp tables

27 Feb 2023 21:41:39,291 INFO : Completed import of Skyline document from 220524_ApoE_HoofnagleLab_LLOQ_Day1.sky.zip

27 Feb 2023 21:41:39,293 INFO : 100% Done

27 Feb 2023 21:41:39,297 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run147002/220524_ApoE_HoofnagleLab_LLOQ_Day1.sky.zip into the system

27 Feb 2023 21:41:39,297 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run147002/220524_ApoE_HoofnagleLab_LLOQ_Day1/220524_ApoE_HoofnagleLab_LLOQ_Day1.skyd into the system

27 Feb 2023 21:41:39,297 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run147002/220524_ApoE_HoofnagleLab_LLOQ_Day1/220524_ApoE_HoofnagleLab_LLOQ_Day1.skyd into the system

27 Feb 2023 21:41:39,297 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run147003/220526_ApoE_HoofnagleLab_LLOQ_day2.sky.zip into the system

27 Feb 2023 21:41:39,298 INFO : Starting import from 220526_ApoE_HoofnagleLab_LLOQ_day2.sky.zip

27 Feb 2023 21:41:39,300 INFO : Starting to import Skyline document from 220526_ApoE_HoofnagleLab_LLOQ_day2.sky.zip

27 Feb 2023 21:41:39,301 INFO : Expanding 220526_ApoE_HoofnagleLab_LLOQ_day2.skyd

27 Feb 2023 21:41:39,310 INFO : Expanding 220526_ApoE_HoofnagleLab_LLOQ_day2.sky.view

27 Feb 2023 21:41:39,310 INFO : Expanding 220526_ApoE_HoofnagleLab_LLOQ_day2.sky

27 Feb 2023 21:41:39,312 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13

27 Feb 2023 21:41:39,315 INFO : 5% Done

27 Feb 2023 21:41:39,329 DEBUG: Starting to load chromatogram headers

27 Feb 2023 21:41:39,329 DEBUG: Done loading chromatogram headers

27 Feb 2023 21:41:39,473 INFO : Inserting ApoE Peptides

27 Feb 2023 21:41:39,482 INFO : 24% Done

27 Feb 2023 21:41:39,529 INFO : 47% Done

27 Feb 2023 21:41:39,585 INFO : 65% Done

27 Feb 2023 21:41:39,627 INFO : 81% Done

27 Feb 2023 21:41:39,672 INFO : 98% Done

27 Feb 2023 21:41:39,709 DEBUG: Total peptides inserted: 5

27 Feb 2023 21:41:39,710 INFO : Done parsing Skyline document.

27 Feb 2023 21:41:39,711 INFO : Creating and populating temp tables for Proportion values

27 Feb 2023 21:41:39,769 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

27 Feb 2023 21:41:39,780 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

27 Feb 2023 21:41:39,784 INFO : Cleaning up temp tables

27 Feb 2023 21:41:40,024 INFO : Completed import of Skyline document from 220526_ApoE_HoofnagleLab_LLOQ_day2.sky.zip

27 Feb 2023 21:41:40,026 INFO : 100% Done

27 Feb 2023 21:41:40,029 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run147003/220526_ApoE_HoofnagleLab_LLOQ_day2.sky.zip into the system

27 Feb 2023 21:41:40,029 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run147003/220526_ApoE_HoofnagleLab_LLOQ_day2/220526_ApoE_HoofnagleLab_LLOQ_day2.skyd into the system

27 Feb 2023 21:41:40,030 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run147003/220526_ApoE_HoofnagleLab_LLOQ_day2/220526_ApoE_HoofnagleLab_LLOQ_day2.skyd into the system

27 Feb 2023 21:41:40,030 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run147004/220531_ApoE_HoofnagleLab_LLOQ_day3.sky.zip into the system

27 Feb 2023 21:41:40,031 INFO : Starting import from 220531_ApoE_HoofnagleLab_LLOQ_day3.sky.zip

27 Feb 2023 21:41:40,032 INFO : Starting to import Skyline document from 220531_ApoE_HoofnagleLab_LLOQ_day3.sky.zip

27 Feb 2023 21:41:40,033 INFO : Expanding 220531_ApoE_HoofnagleLab_LLOQ_day3.skyd

27 Feb 2023 21:41:40,042 INFO : Expanding 220531_ApoE_HoofnagleLab_LLOQ_day3.sky.view

27 Feb 2023 21:41:40,042 INFO : Expanding 220531_ApoE_HoofnagleLab_LLOQ_day3.sky

27 Feb 2023 21:41:40,044 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13

27 Feb 2023 21:41:40,047 INFO : 5% Done

27 Feb 2023 21:41:40,060 DEBUG: Starting to load chromatogram headers

27 Feb 2023 21:41:40,060 DEBUG: Done loading chromatogram headers

27 Feb 2023 21:41:40,196 INFO : Inserting ApoE Peptides

27 Feb 2023 21:41:40,204 INFO : 24% Done

27 Feb 2023 21:41:40,250 INFO : 47% Done

27 Feb 2023 21:41:40,307 INFO : 65% Done

27 Feb 2023 21:41:40,353 INFO : 81% Done

27 Feb 2023 21:41:40,404 INFO : 98% Done

27 Feb 2023 21:41:40,446 DEBUG: Total peptides inserted: 5

27 Feb 2023 21:41:40,447 INFO : Done parsing Skyline document.

27 Feb 2023 21:41:40,448 INFO : Creating and populating temp tables for Proportion values

27 Feb 2023 21:41:40,508 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

27 Feb 2023 21:41:40,520 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

27 Feb 2023 21:41:40,524 INFO : Cleaning up temp tables

27 Feb 2023 21:41:40,764 INFO : Completed import of Skyline document from 220531_ApoE_HoofnagleLab_LLOQ_day3.sky.zip

27 Feb 2023 21:41:40,766 INFO : 100% Done

27 Feb 2023 21:41:40,769 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run147004/220531_ApoE_HoofnagleLab_LLOQ_day3.sky.zip into the system

27 Feb 2023 21:41:40,769 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run147004/220531_ApoE_HoofnagleLab_LLOQ_day3/220531_ApoE_HoofnagleLab_LLOQ_day3.skyd into the system

27 Feb 2023 21:41:40,770 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run147004/220531_ApoE_HoofnagleLab_LLOQ_day3/220531_ApoE_HoofnagleLab_LLOQ_day3.skyd into the system

27 Feb 2023 21:41:40,770 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run147005/220714_ApoE_Hoofnagle_Interferences.sky.zip into the system

27 Feb 2023 21:41:40,771 INFO : Starting import from 220714_ApoE_Hoofnagle_Interferences.sky.zip

27 Feb 2023 21:41:40,773 INFO : Starting to import Skyline document from 220714_ApoE_Hoofnagle_Interferences.sky.zip

27 Feb 2023 21:41:40,773 INFO : Expanding 220714_ApoE_Hoofnagle_Interferences.skyd

27 Feb 2023 21:41:40,790 INFO : Expanding 220714_ApoE_Hoofnagle_Interferences.sky.view

27 Feb 2023 21:41:40,791 INFO : Expanding 220714_ApoE_Hoofnagle_Interferences.sky

27 Feb 2023 21:41:40,793 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13

27 Feb 2023 21:41:40,796 INFO : 5% Done

27 Feb 2023 21:41:40,821 DEBUG: Starting to load chromatogram headers

27 Feb 2023 21:41:40,821 DEBUG: Done loading chromatogram headers

27 Feb 2023 21:41:40,984 INFO : Inserting ApoE Peptides

27 Feb 2023 21:41:40,997 INFO : 24% Done

27 Feb 2023 21:41:41,073 INFO : 46% Done

27 Feb 2023 21:41:41,158 INFO : 64% Done

27 Feb 2023 21:41:41,236 INFO : 81% Done

27 Feb 2023 21:41:41,314 INFO : 98% Done

27 Feb 2023 21:41:41,379 DEBUG: Total peptides inserted: 5

27 Feb 2023 21:41:41,380 INFO : Done parsing Skyline document.

27 Feb 2023 21:41:41,380 INFO : Creating and populating temp tables for Proportion values

27 Feb 2023 21:41:41,436 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

27 Feb 2023 21:41:41,452 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

27 Feb 2023 21:41:41,457 INFO : Cleaning up temp tables

27 Feb 2023 21:41:41,702 INFO : Completed import of Skyline document from 220714_ApoE_Hoofnagle_Interferences.sky.zip

27 Feb 2023 21:41:41,704 INFO : 100% Done

27 Feb 2023 21:41:41,707 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run147005/220714_ApoE_Hoofnagle_Interferences.sky.zip into the system

27 Feb 2023 21:41:41,708 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run147005/220714_ApoE_Hoofnagle_Interferences/220714_ApoE_Hoofnagle_Interferences.skyd into the system

27 Feb 2023 21:41:41,708 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run147005/220714_ApoE_Hoofnagle_Interferences/220714_ApoE_Hoofnagle_Interferences.skyd into the system

27 Feb 2023 21:41:41,708 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run147006/220602_ApoE_HoofnagleLab_Protein%20stability_Part%201.sky.zip into the system

27 Feb 2023 21:41:41,709 INFO : Starting import from 220602_ApoE_HoofnagleLab_Protein stability_Part 1.sky.zip

27 Feb 2023 21:41:41,711 INFO : Starting to import Skyline document from 220602_ApoE_HoofnagleLab_Protein stability_Part 1.sky.zip

27 Feb 2023 21:41:41,711 INFO : Expanding 220602_ApoE_HoofnagleLab_Protein stability_Part 1.skyd

27 Feb 2023 21:41:41,723 INFO : Expanding 220602_ApoE_HoofnagleLab_Protein stability_Part 1.sky.view

27 Feb 2023 21:41:41,724 INFO : Expanding 220602_ApoE_HoofnagleLab_Protein stability_Part 1.sky

27 Feb 2023 21:41:41,726 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13

27 Feb 2023 21:41:41,729 INFO : 6% Done

27 Feb 2023 21:41:41,747 DEBUG: Starting to load chromatogram headers

27 Feb 2023 21:41:41,748 DEBUG: Done loading chromatogram headers

27 Feb 2023 21:41:41,900 INFO : Inserting ApoE Peptides

27 Feb 2023 21:41:41,910 INFO : 24% Done

27 Feb 2023 21:41:41,972 INFO : 46% Done

27 Feb 2023 21:41:42,043 INFO : 63% Done

27 Feb 2023 21:41:42,101 INFO : 81% Done

27 Feb 2023 21:41:42,160 INFO : 98% Done

27 Feb 2023 21:41:42,211 DEBUG: Total peptides inserted: 5

27 Feb 2023 21:41:42,213 INFO : Done parsing Skyline document.

27 Feb 2023 21:41:42,213 INFO : Creating and populating temp tables for Proportion values

27 Feb 2023 21:41:42,277 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

27 Feb 2023 21:41:42,289 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

27 Feb 2023 21:41:42,294 INFO : Cleaning up temp tables

27 Feb 2023 21:41:42,537 INFO : Completed import of Skyline document from 220602_ApoE_HoofnagleLab_Protein stability_Part 1.sky.zip

27 Feb 2023 21:41:42,539 INFO : 100% Done

27 Feb 2023 21:41:42,542 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run147006/220602_ApoE_HoofnagleLab_Protein%20stability_Part%201.sky.zip into the system

27 Feb 2023 21:41:42,542 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run147006/220602_ApoE_HoofnagleLab_Protein%20stability_Part%201/220602_ApoE_HoofnagleLab_Protein%20stability_Part%201.skyd into the system

27 Feb 2023 21:41:42,543 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run147006/220602_ApoE_HoofnagleLab_Protein%20stability_Part%201/220602_ApoE_HoofnagleLab_Protein%20stability_Part%201.skyd into the system

27 Feb 2023 21:41:42,543 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run147007/220615_ApoE_HoofnagleLab_Peptide%20stability.sky.zip into the system

27 Feb 2023 21:41:42,544 INFO : Starting import from 220615_ApoE_HoofnagleLab_Peptide stability.sky.zip

27 Feb 2023 21:41:42,546 INFO : Starting to import Skyline document from 220615_ApoE_HoofnagleLab_Peptide stability.sky.zip

27 Feb 2023 21:41:42,546 INFO : Expanding 220615_ApoE_HoofnagleLab_Peptide stability.skyd

27 Feb 2023 21:41:42,551 INFO : Expanding 220615_ApoE_HoofnagleLab_Peptide stability.sky.view

27 Feb 2023 21:41:42,552 INFO : Expanding 220615_ApoE_HoofnagleLab_Peptide stability.sky

27 Feb 2023 21:41:42,553 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13

27 Feb 2023 21:41:42,556 INFO : 5% Done

27 Feb 2023 21:41:42,564 DEBUG: Starting to load chromatogram headers

27 Feb 2023 21:41:42,564 DEBUG: Done loading chromatogram headers

27 Feb 2023 21:41:42,700 INFO : 9% Done

27 Feb 2023 21:41:42,700 INFO : Inserting ApoE Peptides

27 Feb 2023 21:41:42,705 INFO : 25% Done

27 Feb 2023 21:41:42,733 INFO : 46% Done

27 Feb 2023 21:41:42,763 INFO : 65% Done

27 Feb 2023 21:41:42,789 INFO : 81% Done

27 Feb 2023 21:41:42,816 INFO : 98% Done

27 Feb 2023 21:41:42,839 DEBUG: Total peptides inserted: 5

27 Feb 2023 21:41:42,841 INFO : Done parsing Skyline document.

27 Feb 2023 21:41:42,841 INFO : Creating and populating temp tables for Proportion values

27 Feb 2023 21:41:42,899 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

27 Feb 2023 21:41:42,904 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

27 Feb 2023 21:41:42,907 INFO : Cleaning up temp tables

27 Feb 2023 21:41:43,164 INFO : Completed import of Skyline document from 220615_ApoE_HoofnagleLab_Peptide stability.sky.zip

27 Feb 2023 21:41:43,166 INFO : 100% Done

27 Feb 2023 21:41:43,170 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run147007/220615_ApoE_HoofnagleLab_Peptide%20stability.sky.zip into the system

27 Feb 2023 21:41:43,170 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run147007/220615_ApoE_HoofnagleLab_Peptide%20stability/220615_ApoE_HoofnagleLab_Peptide%20stability.skyd into the system

27 Feb 2023 21:41:43,170 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run147007/220615_ApoE_HoofnagleLab_Peptide%20stability/220615_ApoE_HoofnagleLab_Peptide%20stability.skyd into the system

27 Feb 2023 21:41:43,170 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run147008/220615_ApoE_HoofnagleLab_Protein%20stability_Part%202.sky.zip into the system

27 Feb 2023 21:41:43,171 INFO : Starting import from 220615_ApoE_HoofnagleLab_Protein stability_Part 2.sky.zip

27 Feb 2023 21:41:43,173 INFO : Starting to import Skyline document from 220615_ApoE_HoofnagleLab_Protein stability_Part 2.sky.zip

27 Feb 2023 21:41:43,173 INFO : Expanding 220615_ApoE_HoofnagleLab_Protein stability_Part 2.skyd

27 Feb 2023 21:41:43,178 INFO : Expanding 220615_ApoE_HoofnagleLab_Protein stability_Part 2.sky.view

27 Feb 2023 21:41:43,179 INFO : Expanding 220615_ApoE_HoofnagleLab_Protein stability_Part 2.sky

27 Feb 2023 21:41:43,180 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13

27 Feb 2023 21:41:43,183 INFO : 5% Done

27 Feb 2023 21:41:43,191 DEBUG: Starting to load chromatogram headers

27 Feb 2023 21:41:43,191 DEBUG: Done loading chromatogram headers

27 Feb 2023 21:41:43,331 INFO : 9% Done

27 Feb 2023 21:41:43,331 INFO : Inserting ApoE Peptides

27 Feb 2023 21:41:43,336 INFO : 25% Done

27 Feb 2023 21:41:43,365 INFO : 46% Done

27 Feb 2023 21:41:43,395 INFO : 65% Done

27 Feb 2023 21:41:43,421 INFO : 81% Done

27 Feb 2023 21:41:43,451 INFO : 98% Done

27 Feb 2023 21:41:43,474 DEBUG: Total peptides inserted: 5

27 Feb 2023 21:41:43,476 INFO : Done parsing Skyline document.

27 Feb 2023 21:41:43,476 INFO : Creating and populating temp tables for Proportion values

27 Feb 2023 21:41:43,538 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

27 Feb 2023 21:41:43,544 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

27 Feb 2023 21:41:43,547 INFO : Cleaning up temp tables

27 Feb 2023 21:41:43,807 INFO : Completed import of Skyline document from 220615_ApoE_HoofnagleLab_Protein stability_Part 2.sky.zip

27 Feb 2023 21:41:43,809 INFO : 100% Done

27 Feb 2023 21:41:43,813 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run147008/220615_ApoE_HoofnagleLab_Protein%20stability_Part%202.sky.zip into the system

27 Feb 2023 21:41:43,813 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run147008/220615_ApoE_HoofnagleLab_Protein%20stability_Part%202/220615_ApoE_HoofnagleLab_Protein%20stability_Part%202.skyd into the system

27 Feb 2023 21:41:43,814 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method%20validation/xar/experiments_and_runs.xar.exploded/Run147008/220615_ApoE_HoofnagleLab_Protein%20stability_Part%202/220615_ApoE_HoofnagleLab_Protein%20stability_Part%202.skyd into the system

27 Feb 2023 21:41:43,861 INFO : Done importing xar

27 Feb 2023 21:41:43,862 INFO : Loading pages and webpart properties

27 Feb 2023 21:41:43,936 INFO : Done importing 4 page(s) with 5 webpart(s)

27 Feb 2023 21:41:43,936 INFO : Loading File Browser config

27 Feb 2023 21:41:43,936 INFO : Done importing File Browser config

27 Feb 2023 21:41:43,937 INFO : Starting Sample Status Data import

27 Feb 2023 21:41:43,937 INFO : No sample types XAR file to process.

27 Feb 2023 21:41:43,937 INFO : Finished importing Sample Status Data

27 Feb 2023 21:41:43,941 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType

27 Feb 2023 21:41:43,943 INFO : A row containing [Description: 'null', Color: '800000', Name: 'Reagent Change'] values already exists. Skipping

27 Feb 2023 21:41:43,943 INFO : A row containing [Description: 'null', Color: 'FF0000', Name: 'Instrumentation Change'] values already exists. Skipping

27 Feb 2023 21:41:43,943 INFO : A row containing [Description: 'null', Color: '0000FF', Name: 'Technician Change'] values already exists. Skipping

27 Feb 2023 21:41:43,944 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType

27 Feb 2023 21:41:43,944 INFO : Done importing folder archive for 02_Method validation

27 Feb 2023 21:41:43,998 INFO : New folder created with inherited permissions: /Panorama Public/2023/TPAD2.0 - ApoE Assay Paper/03_Method application

27 Feb 2023 21:41:43,998 INFO : Loading folder archive for 03_Method application

27 Feb 2023 21:41:43,999 DEBUG: [/Panorama Public/2023/TPAD2.0 - ApoE Assay Paper/03_Method application] Importing folder properties from: /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0 - ApoE Assay Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/03_Method application

27 Feb 2023 21:41:43,999 INFO : Loading folder properties (folder type, settings and active modules)

27 Feb 2023 21:41:44,000 DEBUG: [/Panorama Public/2023/TPAD2.0 - ApoE Assay Paper/03_Method application] Folder type: Targeted MS

27 Feb 2023 21:41:44,000 DEBUG: [/Panorama Public/2023/TPAD2.0 - ApoE Assay Paper/03_Method application] Active modules: Internal, API, Pipeline, Wiki, MS2, TargetedMS, Core, Issues, Experiment, Assay, FileContent, PanoramaPublic, Search, Announcements, Query

27 Feb 2023 21:41:44,057 INFO : Done importing folder properties (folder type, settings and active modules)

27 Feb 2023 21:41:44,058 INFO : Loading container specific module properties

27 Feb 2023 21:41:44,067 INFO : Done importing container specific module properties

27 Feb 2023 21:41:44,067 INFO : Loading etl definitions

27 Feb 2023 21:41:44,068 INFO : Loading wikis

27 Feb 2023 21:41:44,069 INFO : 0 wikis imported

27 Feb 2023 21:41:44,069 INFO : Done importing wikis

27 Feb 2023 21:41:44,070 INFO : Starting to copy files

27 Feb 2023 21:41:44,697 INFO : Copied 398 files

27 Feb 2023 21:41:44,697 INFO : Ensuring exp.data rows exist for imported files

27 Feb 2023 21:41:46,098 INFO : Starting Sample Type and Data Class import

27 Feb 2023 21:41:46,098 INFO : No types XAR file to process.

27 Feb 2023 21:41:46,098 INFO : Finished importing Sample Types and Data Classes

27 Feb 2023 21:41:46,099 INFO : Loading xar

27 Feb 2023 21:41:46,333 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-11184:TargetedMS.ImportSkyZip'

27 Feb 2023 21:41:46,335 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-11184:TargetedMS.ImportSkyZip.Core'

27 Feb 2023 21:41:46,336 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-11184:TargetedMS.ImportSkyZip.Output'

27 Feb 2023 21:41:46,336 DEBUG: Protocol import complete

27 Feb 2023 21:41:46,344 DEBUG: Protocol action set import complete

27 Feb 2023 21:41:46,349 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11184:TargetedMS.ImportSkyZip'

27 Feb 2023 21:41:46,354 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11184:119fcd72-5899-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:46,357 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11184:119fcd94-5899-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:46,357 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11184:TargetedMS.ImportSkyZip.Core'

27 Feb 2023 21:41:46,359 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11184:TargetedMS.ImportSkyZip.Output'

27 Feb 2023 21:41:46,359 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11184:119fcd9f-5899-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:46,362 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11184:TargetedMS.ImportSkyZip'

27 Feb 2023 21:41:46,366 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11184:32004c7f-589b-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:46,368 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11184:32004c90-589b-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:46,368 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11184:TargetedMS.ImportSkyZip.Core'

27 Feb 2023 21:41:46,370 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11184:TargetedMS.ImportSkyZip.Output'

27 Feb 2023 21:41:46,370 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11184:32004c9b-589b-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:46,373 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11184:TargetedMS.ImportSkyZip'

27 Feb 2023 21:41:46,376 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11184:abcb4263-589e-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:46,379 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11184:abcb4272-589e-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:46,379 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11184:TargetedMS.ImportSkyZip.Core'

27 Feb 2023 21:41:46,380 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11184:TargetedMS.ImportSkyZip.Output'

27 Feb 2023 21:41:46,381 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11184:abcb427b-589e-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:46,383 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11184:TargetedMS.ImportSkyZip'

27 Feb 2023 21:41:46,387 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11184:abcb42d3-589e-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:46,389 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11184:abcb4322-589e-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:46,389 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11184:TargetedMS.ImportSkyZip.Core'

27 Feb 2023 21:41:46,391 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11184:TargetedMS.ImportSkyZip.Output'

27 Feb 2023 21:41:46,391 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11184:abcb4348-589e-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:46,394 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11184:TargetedMS.ImportSkyZip'

27 Feb 2023 21:41:46,397 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11184:ac70bc84-589f-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:46,400 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11184:ac70bc99-589f-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:46,400 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11184:TargetedMS.ImportSkyZip.Core'

27 Feb 2023 21:41:46,401 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11184:TargetedMS.ImportSkyZip.Output'

27 Feb 2023 21:41:46,402 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11184:ac70bcbf-589f-103b-b846-fea6ddf50e04'

27 Feb 2023 21:41:46,402 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/03_Method%20application/xar/experiments_and_runs.xar.exploded/Run147010/220608_ApoE_HoofnagleLab_Method%20application_Part%201.sky.zip into the system

27 Feb 2023 21:41:46,403 INFO : Starting import from 220608_ApoE_HoofnagleLab_Method application_Part 1.sky.zip

27 Feb 2023 21:41:46,406 INFO : Starting to import Skyline document from 220608_ApoE_HoofnagleLab_Method application_Part 1.sky.zip

27 Feb 2023 21:41:46,408 INFO : Expanding 220608_ApoE_HoofnagleLab_Method application_Part 1.skyd

27 Feb 2023 21:41:46,446 INFO : Expanding 220608_ApoE_HoofnagleLab_Method application_Part 1.sky.view

27 Feb 2023 21:41:46,446 INFO : Expanding 220608_ApoE_HoofnagleLab_Method application_Part 1.sky

27 Feb 2023 21:41:46,451 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13

27 Feb 2023 21:41:46,455 INFO : 5% Done

27 Feb 2023 21:41:46,521 DEBUG: Starting to load chromatogram headers

27 Feb 2023 21:41:46,522 DEBUG: Done loading chromatogram headers

27 Feb 2023 21:41:46,721 INFO : Inserting ApoE Peptides

27 Feb 2023 21:41:46,752 INFO : 24% Done

27 Feb 2023 21:41:46,953 INFO : 45% Done

27 Feb 2023 21:41:47,186 INFO : 63% Done

27 Feb 2023 21:41:47,384 INFO : 80% Done

27 Feb 2023 21:41:47,580 INFO : 98% Done

27 Feb 2023 21:41:47,744 DEBUG: Total peptides inserted: 5

27 Feb 2023 21:41:47,746 INFO : Done parsing Skyline document.

27 Feb 2023 21:41:47,747 INFO : Creating and populating temp tables for Proportion values

27 Feb 2023 21:41:47,809 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

27 Feb 2023 21:41:47,851 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

27 Feb 2023 21:41:47,864 INFO : Cleaning up temp tables

27 Feb 2023 21:41:48,132 INFO : Completed import of Skyline document from 220608_ApoE_HoofnagleLab_Method application_Part 1.sky.zip

27 Feb 2023 21:41:48,134 INFO : 100% Done

27 Feb 2023 21:41:48,137 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/03_Method%20application/xar/experiments_and_runs.xar.exploded/Run147010/220608_ApoE_HoofnagleLab_Method%20application_Part%201.sky.zip into the system

27 Feb 2023 21:41:48,137 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/03_Method%20application/xar/experiments_and_runs.xar.exploded/Run147010/220608_ApoE_HoofnagleLab_Method%20application_Part%201/220608_ApoE_HoofnagleLab_Method%20application_Part%201.skyd into the system

27 Feb 2023 21:41:48,138 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/03_Method%20application/xar/experiments_and_runs.xar.exploded/Run147010/220608_ApoE_HoofnagleLab_Method%20application_Part%201/220608_ApoE_HoofnagleLab_Method%20application_Part%201.skyd into the system

27 Feb 2023 21:41:48,138 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/03_Method%20application/xar/experiments_and_runs.xar.exploded/Run147011/220608_ApoE_HoofnagleLab_Method%20application_Part%202.sky.zip into the system

27 Feb 2023 21:41:48,139 INFO : Starting import from 220608_ApoE_HoofnagleLab_Method application_Part 2.sky.zip

27 Feb 2023 21:41:48,141 INFO : Starting to import Skyline document from 220608_ApoE_HoofnagleLab_Method application_Part 2.sky.zip

27 Feb 2023 21:41:48,142 INFO : Expanding 220608_ApoE_HoofnagleLab_Method application_Part 2.skyd

27 Feb 2023 21:41:48,179 INFO : Expanding 220608_ApoE_HoofnagleLab_Method application_Part 2.sky.view

27 Feb 2023 21:41:48,179 INFO : Expanding 220608_ApoE_HoofnagleLab_Method application_Part 2.sky

27 Feb 2023 21:41:48,184 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13

27 Feb 2023 21:41:48,188 INFO : 5% Done

27 Feb 2023 21:41:48,249 DEBUG: Starting to load chromatogram headers

27 Feb 2023 21:41:48,250 DEBUG: Done loading chromatogram headers

27 Feb 2023 21:41:48,432 INFO : Inserting ApoE Peptides

27 Feb 2023 21:41:48,459 INFO : 24% Done

27 Feb 2023 21:41:48,639 INFO : 45% Done

27 Feb 2023 21:41:48,847 INFO : 63% Done

27 Feb 2023 21:41:49,037 INFO : 80% Done

27 Feb 2023 21:41:49,238 INFO : 98% Done

27 Feb 2023 21:41:49,409 DEBUG: Total peptides inserted: 5

27 Feb 2023 21:41:49,411 INFO : Done parsing Skyline document.

27 Feb 2023 21:41:49,411 INFO : Creating and populating temp tables for Proportion values

27 Feb 2023 21:41:49,474 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

27 Feb 2023 21:41:49,513 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

27 Feb 2023 21:41:49,527 INFO : Cleaning up temp tables

27 Feb 2023 21:41:49,806 INFO : Completed import of Skyline document from 220608_ApoE_HoofnagleLab_Method application_Part 2.sky.zip

27 Feb 2023 21:41:49,808 INFO : 100% Done

27 Feb 2023 21:41:49,811 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/03_Method%20application/xar/experiments_and_runs.xar.exploded/Run147011/220608_ApoE_HoofnagleLab_Method%20application_Part%202.sky.zip into the system

27 Feb 2023 21:41:49,811 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/03_Method%20application/xar/experiments_and_runs.xar.exploded/Run147011/220608_ApoE_HoofnagleLab_Method%20application_Part%202/220608_ApoE_HoofnagleLab_Method%20application_Part%202.skyd into the system

27 Feb 2023 21:41:49,812 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/03_Method%20application/xar/experiments_and_runs.xar.exploded/Run147011/220608_ApoE_HoofnagleLab_Method%20application_Part%202/220608_ApoE_HoofnagleLab_Method%20application_Part%202.skyd into the system

27 Feb 2023 21:41:49,812 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/03_Method%20application/xar/experiments_and_runs.xar.exploded/Run147012/220602_ApoE_HoofnagleLab_Method%20application_Part%205.sky.zip into the system

27 Feb 2023 21:41:49,813 INFO : Starting import from 220602_ApoE_HoofnagleLab_Method application_Part 5.sky.zip

27 Feb 2023 21:41:49,815 INFO : Starting to import Skyline document from 220602_ApoE_HoofnagleLab_Method application_Part 5.sky.zip

27 Feb 2023 21:41:49,815 INFO : Expanding 220602_ApoE_HoofnagleLab_Method application_Part 5.skyd

27 Feb 2023 21:41:49,821 INFO : Expanding 220602_ApoE_HoofnagleLab_Method application_Part 5.sky.view

27 Feb 2023 21:41:49,821 INFO : Expanding 220602_ApoE_HoofnagleLab_Method application_Part 5.sky

27 Feb 2023 21:41:49,823 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13

27 Feb 2023 21:41:49,828 INFO : 3% Done

27 Feb 2023 21:41:49,837 DEBUG: Starting to load chromatogram headers

27 Feb 2023 21:41:49,837 DEBUG: Done loading chromatogram headers

27 Feb 2023 21:41:49,959 INFO : Inserting ApoE Peptides

27 Feb 2023 21:41:49,966 INFO : 20% Done

27 Feb 2023 21:41:50,015 INFO : 47% Done

27 Feb 2023 21:41:50,083 INFO : 63% Done

27 Feb 2023 21:41:50,129 INFO : 85% Done

27 Feb 2023 21:41:50,188 INFO : 98% Done

27 Feb 2023 21:41:50,221 DEBUG: Total peptides inserted: 5

27 Feb 2023 21:41:50,222 INFO : Done parsing Skyline document.

27 Feb 2023 21:41:50,222 INFO : Creating and populating temp tables for Proportion values

27 Feb 2023 21:41:50,276 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

27 Feb 2023 21:41:50,284 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

27 Feb 2023 21:41:50,287 INFO : Cleaning up temp tables

27 Feb 2023 21:41:50,538 INFO : Completed import of Skyline document from 220602_ApoE_HoofnagleLab_Method application_Part 5.sky.zip

27 Feb 2023 21:41:50,540 INFO : 100% Done

27 Feb 2023 21:41:50,544 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/03_Method%20application/xar/experiments_and_runs.xar.exploded/Run147012/220602_ApoE_HoofnagleLab_Method%20application_Part%205.sky.zip into the system

27 Feb 2023 21:41:50,544 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/03_Method%20application/xar/experiments_and_runs.xar.exploded/Run147012/220602_ApoE_HoofnagleLab_Method%20application_Part%205/220602_ApoE_HoofnagleLab_Method%20application_Part%205.skyd into the system

27 Feb 2023 21:41:50,544 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/03_Method%20application/xar/experiments_and_runs.xar.exploded/Run147012/220602_ApoE_HoofnagleLab_Method%20application_Part%205/220602_ApoE_HoofnagleLab_Method%20application_Part%205.skyd into the system

27 Feb 2023 21:41:50,544 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/03_Method%20application/xar/experiments_and_runs.xar.exploded/Run147013/220610_ApoE_HoofnagleLab_Method%20application_Part%203.sky.zip into the system

27 Feb 2023 21:41:50,545 INFO : Starting import from 220610_ApoE_HoofnagleLab_Method application_Part 3.sky.zip

27 Feb 2023 21:41:50,547 INFO : Starting to import Skyline document from 220610_ApoE_HoofnagleLab_Method application_Part 3.sky.zip

27 Feb 2023 21:41:50,548 INFO : Expanding 220610_ApoE_HoofnagleLab_Method application_Part 3.skyd

27 Feb 2023 21:41:50,585 INFO : Expanding 220610_ApoE_HoofnagleLab_Method application_Part 3.sky.view

27 Feb 2023 21:41:50,585 INFO : Expanding 220610_ApoE_HoofnagleLab_Method application_Part 3.sky

27 Feb 2023 21:41:50,590 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13

27 Feb 2023 21:41:50,594 INFO : 5% Done

27 Feb 2023 21:41:50,651 DEBUG: Starting to load chromatogram headers

27 Feb 2023 21:41:50,652 DEBUG: Done loading chromatogram headers

27 Feb 2023 21:41:50,837 INFO : Inserting ApoE Peptides

27 Feb 2023 21:41:50,862 INFO : 24% Done

27 Feb 2023 21:41:51,046 INFO : 45% Done

27 Feb 2023 21:41:51,246 INFO : 63% Done

27 Feb 2023 21:41:51,420 INFO : 80% Done

27 Feb 2023 21:41:51,596 INFO : 98% Done

27 Feb 2023 21:41:51,743 DEBUG: Total peptides inserted: 5

27 Feb 2023 21:41:51,745 INFO : Done parsing Skyline document.

27 Feb 2023 21:41:51,746 INFO : Creating and populating temp tables for Proportion values

27 Feb 2023 21:41:51,806 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

27 Feb 2023 21:41:51,840 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

27 Feb 2023 21:41:51,852 INFO : Cleaning up temp tables

27 Feb 2023 21:41:52,112 INFO : Completed import of Skyline document from 220610_ApoE_HoofnagleLab_Method application_Part 3.sky.zip

27 Feb 2023 21:41:52,113 INFO : 100% Done

27 Feb 2023 21:41:52,117 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/03_Method%20application/xar/experiments_and_runs.xar.exploded/Run147013/220610_ApoE_HoofnagleLab_Method%20application_Part%203.sky.zip into the system

27 Feb 2023 21:41:52,117 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/03_Method%20application/xar/experiments_and_runs.xar.exploded/Run147013/220610_ApoE_HoofnagleLab_Method%20application_Part%203/220610_ApoE_HoofnagleLab_Method%20application_Part%203.skyd into the system

27 Feb 2023 21:41:52,117 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/03_Method%20application/xar/experiments_and_runs.xar.exploded/Run147013/220610_ApoE_HoofnagleLab_Method%20application_Part%203/220610_ApoE_HoofnagleLab_Method%20application_Part%203.skyd into the system

27 Feb 2023 21:41:52,117 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/03_Method%20application/xar/experiments_and_runs.xar.exploded/Run147014/4220610_ApoE_HoofnagleLab_Method%20application_Part%204.sky.zip into the system

27 Feb 2023 21:41:52,118 INFO : Starting import from 4220610_ApoE_HoofnagleLab_Method application_Part 4.sky.zip

27 Feb 2023 21:41:52,120 INFO : Starting to import Skyline document from 4220610_ApoE_HoofnagleLab_Method application_Part 4.sky.zip

27 Feb 2023 21:41:52,121 INFO : Expanding 4220610_ApoE_HoofnagleLab_Method application_Part 4.skyd

27 Feb 2023 21:41:52,146 INFO : Expanding 4220610_ApoE_HoofnagleLab_Method application_Part 4.sky.view

27 Feb 2023 21:41:52,146 INFO : Expanding 4220610_ApoE_HoofnagleLab_Method application_Part 4.sky

27 Feb 2023 21:41:52,152 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13

27 Feb 2023 21:41:52,155 INFO : 2% Done

27 Feb 2023 21:41:52,197 DEBUG: Starting to load chromatogram headers

27 Feb 2023 21:41:52,198 DEBUG: Done loading chromatogram headers

27 Feb 2023 21:41:52,358 INFO : Inserting ApoE Peptides

27 Feb 2023 21:41:52,378 INFO : 19% Done

27 Feb 2023 21:41:52,548 INFO : 46% Done

27 Feb 2023 21:41:52,804 INFO : 62% Done

27 Feb 2023 21:41:52,973 INFO : 85% Done

27 Feb 2023 21:41:53,194 INFO : 98% Done

27 Feb 2023 21:41:53,320 DEBUG: Total peptides inserted: 5

27 Feb 2023 21:41:53,321 INFO : Done parsing Skyline document.

27 Feb 2023 21:41:53,322 INFO : Creating and populating temp tables for Proportion values

27 Feb 2023 21:41:53,382 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

27 Feb 2023 21:41:53,411 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

27 Feb 2023 21:41:53,420 INFO : Cleaning up temp tables

27 Feb 2023 21:41:53,671 INFO : Completed import of Skyline document from 4220610_ApoE_HoofnagleLab_Method application_Part 4.sky.zip

27 Feb 2023 21:41:53,673 INFO : 100% Done

27 Feb 2023 21:41:53,677 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/03_Method%20application/xar/experiments_and_runs.xar.exploded/Run147014/4220610_ApoE_HoofnagleLab_Method%20application_Part%204.sky.zip into the system

27 Feb 2023 21:41:53,677 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/03_Method%20application/xar/experiments_and_runs.xar.exploded/Run147014/4220610_ApoE_HoofnagleLab_Method%20application_Part%204/4220610_ApoE_HoofnagleLab_Method%20application_Part%204.skyd into the system

27 Feb 2023 21:41:53,677 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/03_Method%20application/xar/experiments_and_runs.xar.exploded/Run147014/4220610_ApoE_HoofnagleLab_Method%20application_Part%204/4220610_ApoE_HoofnagleLab_Method%20application_Part%204.skyd into the system

27 Feb 2023 21:41:53,695 INFO : Done importing xar

27 Feb 2023 21:41:53,696 INFO : Loading pages and webpart properties

27 Feb 2023 21:41:53,767 INFO : Done importing 4 page(s) with 6 webpart(s)

27 Feb 2023 21:41:53,767 INFO : Loading File Browser config

27 Feb 2023 21:41:53,767 INFO : Done importing File Browser config

27 Feb 2023 21:41:53,768 INFO : Starting Sample Status Data import

27 Feb 2023 21:41:53,768 INFO : No sample types XAR file to process.

27 Feb 2023 21:41:53,768 INFO : Finished importing Sample Status Data

27 Feb 2023 21:41:53,772 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType

27 Feb 2023 21:41:53,775 INFO : A row containing [Description: 'null', Color: '800000', Name: 'Reagent Change'] values already exists. Skipping

27 Feb 2023 21:41:53,775 INFO : A row containing [Description: 'null', Color: 'FF0000', Name: 'Instrumentation Change'] values already exists. Skipping

27 Feb 2023 21:41:53,775 INFO : A row containing [Description: 'null', Color: '0000FF', Name: 'Technician Change'] values already exists. Skipping

27 Feb 2023 21:41:53,775 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType

27 Feb 2023 21:41:53,776 INFO : Done importing folder archive for 03_Method application

27 Feb 2023 21:41:53,825 INFO : New folder created with inherited permissions: /Panorama Public/2023/TPAD2.0 - ApoE Assay Paper/04-Value assignment secondary calibrator

27 Feb 2023 21:41:53,825 INFO : Loading folder archive for 04-Value assignment secondary calibrator

27 Feb 2023 21:41:53,825 DEBUG: [/Panorama Public/2023/TPAD2.0 - ApoE Assay Paper/04-Value assignment secondary calibrator] Importing folder properties from: /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0 - ApoE Assay Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/04-Value assignment secondary calibrator

27 Feb 2023 21:41:53,826 INFO : Loading folder properties (folder type, settings and active modules)

27 Feb 2023 21:41:53,826 DEBUG: [/Panorama Public/2023/TPAD2.0 - ApoE Assay Paper/04-Value assignment secondary calibrator] Folder type: Targeted MS

27 Feb 2023 21:41:53,826 DEBUG: [/Panorama Public/2023/TPAD2.0 - ApoE Assay Paper/04-Value assignment secondary calibrator] Active modules: Internal, API, Pipeline, Wiki, MS2, TargetedMS, Core, Issues, Experiment, Assay, FileContent, PanoramaPublic, Search, Announcements, Query

27 Feb 2023 21:41:53,882 INFO : Done importing folder properties (folder type, settings and active modules)

27 Feb 2023 21:41:53,883 INFO : Loading container specific module properties

27 Feb 2023 21:41:53,891 INFO : Done importing container specific module properties

27 Feb 2023 21:41:53,892 INFO : Loading etl definitions

27 Feb 2023 21:41:53,893 INFO : Loading wikis

27 Feb 2023 21:41:53,894 INFO : 0 wikis imported

27 Feb 2023 21:41:53,894 INFO : Done importing wikis

27 Feb 2023 21:41:53,895 INFO : Starting to copy files

27 Feb 2023 21:41:54,074 INFO : Copied 150 files

27 Feb 2023 21:41:54,074 INFO : Ensuring exp.data rows exist for imported files

27 Feb 2023 21:41:54,603 INFO : Starting Sample Type and Data Class import

27 Feb 2023 21:41:54,603 INFO : No types XAR file to process.

27 Feb 2023 21:41:54,603 INFO : Finished importing Sample Types and Data Classes

27 Feb 2023 21:41:54,604 INFO : Loading xar

27 Feb 2023 21:41:54,700 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-11185:TargetedMS.ImportSkyZip'

27 Feb 2023 21:41:54,701 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-11185:TargetedMS.ImportSkyZip.Core'

27 Feb 2023 21:41:54,703 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-11185:TargetedMS.ImportSkyZip.Output'

27 Feb 2023 21:41:54,703 DEBUG: Protocol import complete

27 Feb 2023 21:41:54,712 DEBUG: Protocol action set import complete

27 Feb 2023 21:41:54,717 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11185:TargetedMS.ImportSkyZip'

27 Feb 2023 21:41:54,722 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11185:3de6e345-9918-103b-b327-fea6ddf5f3bc'

27 Feb 2023 21:41:54,725 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11185:3de6e323-9918-103b-b327-fea6ddf5f3bc'

27 Feb 2023 21:41:54,725 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11185:TargetedMS.ImportSkyZip.Core'

27 Feb 2023 21:41:54,727 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11185:TargetedMS.ImportSkyZip.Output'

27 Feb 2023 21:41:54,727 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11185:3de6e353-9918-103b-b327-fea6ddf5f3bc'

27 Feb 2023 21:41:54,730 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11185:TargetedMS.ImportSkyZip'

27 Feb 2023 21:41:54,734 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11185:3de6e51f-9918-103b-b327-fea6ddf5f3bc'

27 Feb 2023 21:41:54,736 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11185:3de6e50e-9918-103b-b327-fea6ddf5f3bc'

27 Feb 2023 21:41:54,736 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11185:TargetedMS.ImportSkyZip.Core'

27 Feb 2023 21:41:54,738 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11185:TargetedMS.ImportSkyZip.Output'

27 Feb 2023 21:41:54,738 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11185:3de6e52f-9918-103b-b327-fea6ddf5f3bc'

27 Feb 2023 21:41:54,741 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11185:TargetedMS.ImportSkyZip'

27 Feb 2023 21:41:54,744 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11185:3de6e5fd-9918-103b-b327-fea6ddf5f3bc'

27 Feb 2023 21:41:54,747 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11185:3de6e5ec-9918-103b-b327-fea6ddf5f3bc'

27 Feb 2023 21:41:54,747 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11185:TargetedMS.ImportSkyZip.Core'

27 Feb 2023 21:41:54,748 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11185:TargetedMS.ImportSkyZip.Output'

27 Feb 2023 21:41:54,748 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11185:3de6e606-9918-103b-b327-fea6ddf5f3bc'

27 Feb 2023 21:41:54,749 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/04-Value%20assignment%20secondary%20calibrator/xar/experiments_and_runs.xar.exploded/Run151838/220808_ApoE_HoofnagleLab_Value%20assignment%20secondary%20calibrator_Day%201_2023-02-27_14-07-32/220808_ApoE_HoofnagleLab_Value%20assignment%20secondary%20calibrator_Day%201.skyd into the system

27 Feb 2023 21:41:54,749 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/04-Value%20assignment%20secondary%20calibrator/xar/experiments_and_runs.xar.exploded/Run151838/220808_ApoE_HoofnagleLab_Value%20assignment%20secondary%20calibrator_Day%201_2023-02-27_14-07-32/220808_ApoE_HoofnagleLab_Value%20assignment%20secondary%20calibrator_Day%201.skyd into the system

27 Feb 2023 21:41:54,749 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/04-Value%20assignment%20secondary%20calibrator/xar/experiments_and_runs.xar.exploded/Run151838/220808_ApoE_HoofnagleLab_Value%20assignment%20secondary%20calibrator_Day%201_2023-02-27_14-07-32.sky.zip into the system

27 Feb 2023 21:41:54,750 INFO : Starting import from 220808_ApoE_HoofnagleLab_Value assignment secondary calibrator_Day 1_2023-02-27_14-07-32.sky.zip

27 Feb 2023 21:41:54,753 INFO : Starting to import Skyline document from 220808_ApoE_HoofnagleLab_Value assignment secondary calibrator_Day 1_2023-02-27_14-07-32.sky.zip

27 Feb 2023 21:41:54,754 INFO : Expanding 220808_ApoE_HoofnagleLab_Value assignment secondary calibrator_Day 1.skyd

27 Feb 2023 21:41:54,771 INFO : Expanding 220808_ApoE_HoofnagleLab_Value assignment secondary calibrator_Day 1.sky.view

27 Feb 2023 21:41:54,771 INFO : Expanding 220808_ApoE_HoofnagleLab_Value assignment secondary calibrator_Day 1.sky

27 Feb 2023 21:41:54,774 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13

27 Feb 2023 21:41:54,778 INFO : 5% Done

27 Feb 2023 21:41:54,804 DEBUG: Starting to load chromatogram headers

27 Feb 2023 21:41:54,804 DEBUG: Done loading chromatogram headers

27 Feb 2023 21:41:54,975 INFO : Inserting ApoE Peptides

27 Feb 2023 21:41:54,991 INFO : 24% Done

27 Feb 2023 21:41:55,087 INFO : 45% Done

27 Feb 2023 21:41:55,190 INFO : 63% Done

27 Feb 2023 21:41:55,280 INFO : 81% Done

27 Feb 2023 21:41:55,372 INFO : 98% Done

27 Feb 2023 21:41:55,448 DEBUG: Total peptides inserted: 5

27 Feb 2023 21:41:55,449 INFO : Done parsing Skyline document.

27 Feb 2023 21:41:55,450 INFO : Creating and populating temp tables for Proportion values

27 Feb 2023 21:41:55,508 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

27 Feb 2023 21:41:55,529 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

27 Feb 2023 21:41:55,535 INFO : Cleaning up temp tables

27 Feb 2023 21:41:55,808 INFO : Completed import of Skyline document from 220808_ApoE_HoofnagleLab_Value assignment secondary calibrator_Day 1_2023-02-27_14-07-32.sky.zip

27 Feb 2023 21:41:55,810 INFO : 100% Done

27 Feb 2023 21:41:55,813 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/04-Value%20assignment%20secondary%20calibrator/xar/experiments_and_runs.xar.exploded/Run151838/220808_ApoE_HoofnagleLab_Value%20assignment%20secondary%20calibrator_Day%201_2023-02-27_14-07-32.sky.zip into the system

27 Feb 2023 21:41:55,814 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/04-Value%20assignment%20secondary%20calibrator/xar/experiments_and_runs.xar.exploded/Run151839/220809_ApoE_HoofnagleLab_Value%20assignment%20secondary%20calibrator_Day%202_2023-02-27_14-08-30/220809_ApoE_HoofnagleLab_Value%20assignment%20secondary%20calibrator_Day%202.skyd into the system

27 Feb 2023 21:41:55,814 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/04-Value%20assignment%20secondary%20calibrator/xar/experiments_and_runs.xar.exploded/Run151839/220809_ApoE_HoofnagleLab_Value%20assignment%20secondary%20calibrator_Day%202_2023-02-27_14-08-30/220809_ApoE_HoofnagleLab_Value%20assignment%20secondary%20calibrator_Day%202.skyd into the system

27 Feb 2023 21:41:55,814 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/04-Value%20assignment%20secondary%20calibrator/xar/experiments_and_runs.xar.exploded/Run151839/220809_ApoE_HoofnagleLab_Value%20assignment%20secondary%20calibrator_Day%202_2023-02-27_14-08-30.sky.zip into the system

27 Feb 2023 21:41:55,815 INFO : Starting import from 220809_ApoE_HoofnagleLab_Value assignment secondary calibrator_Day 2_2023-02-27_14-08-30.sky.zip

27 Feb 2023 21:41:55,817 INFO : Starting to import Skyline document from 220809_ApoE_HoofnagleLab_Value assignment secondary calibrator_Day 2_2023-02-27_14-08-30.sky.zip

27 Feb 2023 21:41:55,817 INFO : Expanding 220809_ApoE_HoofnagleLab_Value assignment secondary calibrator_Day 2.skyd

27 Feb 2023 21:41:55,836 INFO : Expanding 220809_ApoE_HoofnagleLab_Value assignment secondary calibrator_Day 2.sky.view

27 Feb 2023 21:41:55,836 INFO : Expanding 220809_ApoE_HoofnagleLab_Value assignment secondary calibrator_Day 2.sky

27 Feb 2023 21:41:55,839 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13

27 Feb 2023 21:41:55,844 INFO : 5% Done

27 Feb 2023 21:41:55,871 DEBUG: Starting to load chromatogram headers

27 Feb 2023 21:41:55,871 DEBUG: Done loading chromatogram headers

27 Feb 2023 21:41:56,028 INFO : Inserting ApoE Peptides

27 Feb 2023 21:41:56,041 INFO : 24% Done

27 Feb 2023 21:41:56,131 INFO : 46% Done

27 Feb 2023 21:41:56,228 INFO : 63% Done

27 Feb 2023 21:41:56,314 INFO : 80% Done

27 Feb 2023 21:41:56,402 INFO : 98% Done

27 Feb 2023 21:41:56,474 DEBUG: Total peptides inserted: 5

27 Feb 2023 21:41:56,478 INFO : Done parsing Skyline document.

27 Feb 2023 21:41:56,479 INFO : Creating and populating temp tables for Proportion values

27 Feb 2023 21:41:56,540 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

27 Feb 2023 21:41:56,561 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

27 Feb 2023 21:41:56,567 INFO : Cleaning up temp tables

27 Feb 2023 21:41:56,819 INFO : Completed import of Skyline document from 220809_ApoE_HoofnagleLab_Value assignment secondary calibrator_Day 2_2023-02-27_14-08-30.sky.zip

27 Feb 2023 21:41:56,821 INFO : 100% Done

27 Feb 2023 21:41:56,824 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/04-Value%20assignment%20secondary%20calibrator/xar/experiments_and_runs.xar.exploded/Run151839/220809_ApoE_HoofnagleLab_Value%20assignment%20secondary%20calibrator_Day%202_2023-02-27_14-08-30.sky.zip into the system

27 Feb 2023 21:41:56,824 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/04-Value%20assignment%20secondary%20calibrator/xar/experiments_and_runs.xar.exploded/Run151840/220811_ApoE_HoofnagleLab_Value%20assignment%20secondary%20calibrator_Day%203_2023-02-27_14-08-54/220811_ApoE_HoofnagleLab_Value%20assignment%20secondary%20calibrator_Day%203.skyd into the system

27 Feb 2023 21:41:56,824 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/04-Value%20assignment%20secondary%20calibrator/xar/experiments_and_runs.xar.exploded/Run151840/220811_ApoE_HoofnagleLab_Value%20assignment%20secondary%20calibrator_Day%203_2023-02-27_14-08-54/220811_ApoE_HoofnagleLab_Value%20assignment%20secondary%20calibrator_Day%203.skyd into the system

27 Feb 2023 21:41:56,825 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/04-Value%20assignment%20secondary%20calibrator/xar/experiments_and_runs.xar.exploded/Run151840/220811_ApoE_HoofnagleLab_Value%20assignment%20secondary%20calibrator_Day%203_2023-02-27_14-08-54.sky.zip into the system

27 Feb 2023 21:41:56,826 INFO : Starting import from 220811_ApoE_HoofnagleLab_Value assignment secondary calibrator_Day 3_2023-02-27_14-08-54.sky.zip

27 Feb 2023 21:41:56,827 INFO : Starting to import Skyline document from 220811_ApoE_HoofnagleLab_Value assignment secondary calibrator_Day 3_2023-02-27_14-08-54.sky.zip

27 Feb 2023 21:41:56,828 INFO : Expanding 220811_ApoE_HoofnagleLab_Value assignment secondary calibrator_Day 3.skyd

27 Feb 2023 21:41:56,846 INFO : Expanding 220811_ApoE_HoofnagleLab_Value assignment secondary calibrator_Day 3.sky.view

27 Feb 2023 21:41:56,846 INFO : Expanding 220811_ApoE_HoofnagleLab_Value assignment secondary calibrator_Day 3.sky

27 Feb 2023 21:41:56,849 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13

27 Feb 2023 21:41:56,853 INFO : 5% Done

27 Feb 2023 21:41:56,880 DEBUG: Starting to load chromatogram headers

27 Feb 2023 21:41:56,880 DEBUG: Done loading chromatogram headers

27 Feb 2023 21:41:57,038 INFO : Inserting ApoE Peptides

27 Feb 2023 21:41:57,054 INFO : 24% Done

27 Feb 2023 21:41:57,143 INFO : 46% Done

27 Feb 2023 21:41:57,240 INFO : 63% Done

27 Feb 2023 21:41:57,328 INFO : 80% Done

27 Feb 2023 21:41:57,424 INFO : 98% Done

27 Feb 2023 21:41:57,502 DEBUG: Total peptides inserted: 5

27 Feb 2023 21:41:57,504 INFO : Done parsing Skyline document.

27 Feb 2023 21:41:57,505 INFO : Creating and populating temp tables for Proportion values

27 Feb 2023 21:41:57,564 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

27 Feb 2023 21:41:57,586 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

27 Feb 2023 21:41:57,592 INFO : Cleaning up temp tables

27 Feb 2023 21:41:57,848 INFO : Completed import of Skyline document from 220811_ApoE_HoofnagleLab_Value assignment secondary calibrator_Day 3_2023-02-27_14-08-54.sky.zip

27 Feb 2023 21:41:57,850 INFO : 100% Done

27 Feb 2023 21:41:57,853 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/04-Value%20assignment%20secondary%20calibrator/xar/experiments_and_runs.xar.exploded/Run151840/220811_ApoE_HoofnagleLab_Value%20assignment%20secondary%20calibrator_Day%203_2023-02-27_14-08-54.sky.zip into the system

27 Feb 2023 21:41:57,865 INFO : Done importing xar

27 Feb 2023 21:41:57,865 INFO : Loading pages and webpart properties

27 Feb 2023 21:41:57,940 INFO : Done importing 4 page(s) with 6 webpart(s)

27 Feb 2023 21:41:57,940 INFO : Loading File Browser config

27 Feb 2023 21:41:57,941 INFO : Done importing File Browser config

27 Feb 2023 21:41:57,941 INFO : Starting Sample Status Data import

27 Feb 2023 21:41:57,942 INFO : No sample types XAR file to process.

27 Feb 2023 21:41:57,942 INFO : Finished importing Sample Status Data

27 Feb 2023 21:41:57,946 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType

27 Feb 2023 21:41:57,947 INFO : A row containing [Description: 'null', Color: '800000', Name: 'Reagent Change'] values already exists. Skipping

27 Feb 2023 21:41:57,948 INFO : A row containing [Description: 'null', Color: 'FF0000', Name: 'Instrumentation Change'] values already exists. Skipping

27 Feb 2023 21:41:57,948 INFO : A row containing [Description: 'null', Color: '0000FF', Name: 'Technician Change'] values already exists. Skipping

27 Feb 2023 21:41:57,948 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType

27 Feb 2023 21:41:57,948 INFO : Done importing folder archive for 04-Value assignment secondary calibrator

27 Feb 2023 21:41:57,948 INFO : Done importing subfolders and container tabs

27 Feb 2023 21:41:57,948 INFO : Importing files metadata.

27 Feb 2023 21:41:57,948 DEBUG: [/Panorama Public/2023/TPAD2.0 - ApoE Assay Paper]  Reading files metadata from /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0 - ApoE Assay Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export

27 Feb 2023 21:41:57,949 DEBUG: [/Panorama Public/2023/TPAD2.0 - ApoE Assay Paper/01_Method development]  Reading files metadata from /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0 - ApoE Assay Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/01_Method development

27 Feb 2023 21:41:57,949 DEBUG: [/Panorama Public/2023/TPAD2.0 - ApoE Assay Paper/02_Method validation]  Reading files metadata from /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0 - ApoE Assay Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/02_Method validation

27 Feb 2023 21:41:57,950 DEBUG: [/Panorama Public/2023/TPAD2.0 - ApoE Assay Paper/03_Method application]  Reading files metadata from /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0 - ApoE Assay Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/03_Method application

27 Feb 2023 21:41:57,951 DEBUG: [/Panorama Public/2023/TPAD2.0 - ApoE Assay Paper/04-Value assignment secondary calibrator]  Reading files metadata from /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0 - ApoE Assay Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/04-Value assignment secondary calibrator

27 Feb 2023 21:41:57,952 INFO : 

27 Feb 2023 21:41:57,952 INFO : Experiment import completed successfully.

27 Feb 2023 21:41:57,952 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'

27 Feb 2023 21:41:57,969 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'

27 Feb 2023 21:41:57,969 INFO : 

27 Feb 2023 21:41:57,969 INFO : Checking for library folders.

27 Feb 2023 21:41:57,973 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'

27 Feb 2023 21:41:57,986 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'

27 Feb 2023 21:41:57,986 INFO : 

27 Feb 2023 21:41:57,986 INFO : Finishing up experiment copy.

27 Feb 2023 21:41:57,989 INFO : Adding runs imported in subfolders.

27 Feb 2023 21:41:58,025 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.

27 Feb 2023 21:41:58,025 INFO : Setting version on new experiment to 2

27 Feb 2023 21:41:58,025 INFO : Copying ProteomeXchange ID from the previous copy of the data.

27 Feb 2023 21:41:58,025 INFO : Copying DOI from the previous copy of the data.

27 Feb 2023 21:41:58,028 INFO : Updating access URL to point to the new copy of the data.

27 Feb 2023 21:41:58,030 INFO : Removing copy permissions given to Panorama Public

27 Feb 2023 21:41:58,086 INFO : Adding read permissions to all users that are folder admins in the source folder.

27 Feb 2023 21:41:58,087 INFO : Adding read permissions to all users that had read access to previous copy.

27 Feb 2023 21:41:58,094 INFO : Updating the 'Raw Data' tab configuration

27 Feb 2023 21:41:58,099 INFO : Updating dataFileUrls for run 220330_ApoE_HoofnagleLab_Analyte Free Matrix_Day 1.sky.zip; targetedms run ID 153788

27 Feb 2023 21:41:58,099 INFO : Updating dataFileUrl...

27 Feb 2023 21:41:58,099 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/01_Method%20development/xar/experiments_and_runs.xar.exploded/Run146974/220330_ApoE_HoofnagleLab_Analyte%20Free%20Matrix_Day%201.sky.zip

27 Feb 2023 21:41:58,099 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/TPAD2.0%20-%20ApoE%20Assay%20Paper/01_Method%20development/@files/220330_ApoE_HoofnagleLab_Analyte%20Free%20Matrix_Day%201.sky.zip

27 Feb 2023 21:41:58,100 INFO : Updating dataFileUrl...

27 Feb 2023 21:41:58,100 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/01_Method%20development/xar/experiments_and_runs.xar.exploded/Run146974/220330_ApoE_HoofnagleLab_Analyte%20Free%20Matrix_Day%201/220330_ApoE_HoofnagleLab_Analyte%20Free%20Matrix_Day%201.skyd

27 Feb 2023 21:41:58,100 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/TPAD2.0%20-%20ApoE%20Assay%20Paper/01_Method%20development/@files/220330_ApoE_HoofnagleLab_Analyte%20Free%20Matrix_Day%201/220330_ApoE_HoofnagleLab_Analyte%20Free%20Matrix_Day%201.skyd

27 Feb 2023 21:41:58,103 INFO : Updating dataFileUrls for run 220405_ApoE_HoofnagleLab_Analyte Free Matrix_Day 2.sky.zip; targetedms run ID 153789

27 Feb 2023 21:41:58,103 INFO : Updating dataFileUrl...

27 Feb 2023 21:41:58,103 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/01_Method%20development/xar/experiments_and_runs.xar.exploded/Run146975/220405_ApoE_HoofnagleLab_Analyte%20Free%20Matrix_Day%202/220405_ApoE_HoofnagleLab_Analyte%20Free%20Matrix_Day%202.skyd

27 Feb 2023 21:41:58,103 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/TPAD2.0%20-%20ApoE%20Assay%20Paper/01_Method%20development/@files/220405_ApoE_HoofnagleLab_Analyte%20Free%20Matrix_Day%202/220405_ApoE_HoofnagleLab_Analyte%20Free%20Matrix_Day%202.skyd

27 Feb 2023 21:41:58,104 INFO : Updating dataFileUrl...

27 Feb 2023 21:41:58,104 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/01_Method%20development/xar/experiments_and_runs.xar.exploded/Run146975/220405_ApoE_HoofnagleLab_Analyte%20Free%20Matrix_Day%202.sky.zip

27 Feb 2023 21:41:58,104 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/TPAD2.0%20-%20ApoE%20Assay%20Paper/01_Method%20development/@files/220405_ApoE_HoofnagleLab_Analyte%20Free%20Matrix_Day%202.sky.zip

27 Feb 2023 21:41:58,107 INFO : Updating dataFileUrls for run 220429_ApoE_HoofnagleLab_Matrix effect_Internal standard Buffer.sky.zip; targetedms run ID 153790

27 Feb 2023 21:41:58,107 INFO : Updating dataFileUrl...

27 Feb 2023 21:41:58,107 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/01_Method%20development/xar/experiments_and_runs.xar.exploded/Run146976/220429_ApoE_HoofnagleLab_Matrix%20effect_Internal%20standard%20Buffer.sky.zip

27 Feb 2023 21:41:58,107 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/TPAD2.0%20-%20ApoE%20Assay%20Paper/01_Method%20development/@files/220429_ApoE_HoofnagleLab_Matrix%20effect_Internal%20standard%20Buffer.sky.zip

27 Feb 2023 21:41:58,108 INFO : Updating dataFileUrl...

27 Feb 2023 21:41:58,108 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/01_Method%20development/xar/experiments_and_runs.xar.exploded/Run146976/220429_ApoE_HoofnagleLab_Matrix%20effect_Internal%20standard%20Buffer/220429_ApoE_HoofnagleLab_Matrix%20effect_Internal%20standard%20Buffer.skyd

27 Feb 2023 21:41:58,108 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/TPAD2.0%20-%20ApoE%20Assay%20Paper/01_Method%20development/@files/220429_ApoE_HoofnagleLab_Matrix%20effect_Internal%20standard%20Buffer/220429_ApoE_HoofnagleLab_Matrix%20effect_Internal%20standard%20Buffer.skyd

27 Feb 2023 21:41:58,110 INFO : Updating dataFileUrls for run 220429_ApoE_HoofnagleLab_Matrix effect_Calibrator preparation.sky.zip; targetedms run ID 153791

27 Feb 2023 21:41:58,110 INFO : Updating dataFileUrl...

27 Feb 2023 21:41:58,110 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/01_Method%20development/xar/experiments_and_runs.xar.exploded/Run146977/220429_ApoE_HoofnagleLab_Matrix%20effect_Calibrator%20preparation/220429_ApoE_HoofnagleLab_Matrix%20effect_Calibrator%20preparation.skyd

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27 Feb 2023 21:41:58,160 INFO : Updating dataFileUrls for run 220615_ApoE_HoofnagleLab_Peptide stability.sky.zip; targetedms run ID 153805

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27 Feb 2023 21:41:58,161 INFO : Updating dataFileUrl...

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27 Feb 2023 21:41:58,163 INFO : Updating dataFileUrls for run 220615_ApoE_HoofnagleLab_Protein stability_Part 2.sky.zip; targetedms run ID 153806

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27 Feb 2023 21:41:58,167 INFO : Updating dataFileUrls for run 220608_ApoE_HoofnagleLab_Method application_Part 1.sky.zip; targetedms run ID 153807

27 Feb 2023 21:41:58,167 INFO : Updating dataFileUrl...

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27 Feb 2023 21:41:58,170 INFO : Updating dataFileUrls for run 220608_ApoE_HoofnagleLab_Method application_Part 2.sky.zip; targetedms run ID 153808

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27 Feb 2023 21:41:58,174 INFO : Updating dataFileUrls for run 220602_ApoE_HoofnagleLab_Method application_Part 5.sky.zip; targetedms run ID 153809

27 Feb 2023 21:41:58,174 INFO : Updating dataFileUrl...

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27 Feb 2023 21:41:58,177 INFO : Updating dataFileUrls for run 220610_ApoE_HoofnagleLab_Method application_Part 3.sky.zip; targetedms run ID 153810

27 Feb 2023 21:41:58,177 INFO : Updating dataFileUrl...

27 Feb 2023 21:41:58,177 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/03_Method%20application/xar/experiments_and_runs.xar.exploded/Run147013/220610_ApoE_HoofnagleLab_Method%20application_Part%203/220610_ApoE_HoofnagleLab_Method%20application_Part%203.skyd

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27 Feb 2023 21:41:58,181 INFO : Updating dataFileUrls for run 4220610_ApoE_HoofnagleLab_Method application_Part 4.sky.zip; targetedms run ID 153811

27 Feb 2023 21:41:58,181 INFO : Updating dataFileUrl...

27 Feb 2023 21:41:58,181 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/03_Method%20application/xar/experiments_and_runs.xar.exploded/Run147014/4220610_ApoE_HoofnagleLab_Method%20application_Part%204.sky.zip

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27 Feb 2023 21:41:58,184 INFO : Updating dataFileUrls for run 220808_ApoE_HoofnagleLab_Value assignment secondary calibrator_Day 1_2023-02-27_14-07-32.sky.zip; targetedms run ID 153812

27 Feb 2023 21:41:58,184 INFO : Updating dataFileUrl...

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27 Feb 2023 21:41:58,186 INFO : Updating dataFileUrl...

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27 Feb 2023 21:41:58,188 INFO : Updating dataFileUrls for run 220809_ApoE_HoofnagleLab_Value assignment secondary calibrator_Day 2_2023-02-27_14-08-30.sky.zip; targetedms run ID 153813

27 Feb 2023 21:41:58,188 INFO : Updating dataFileUrl...

27 Feb 2023 21:41:58,188 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/04-Value%20assignment%20secondary%20calibrator/xar/experiments_and_runs.xar.exploded/Run151839/220809_ApoE_HoofnagleLab_Value%20assignment%20secondary%20calibrator_Day%202_2023-02-27_14-08-30/220809_ApoE_HoofnagleLab_Value%20assignment%20secondary%20calibrator_Day%202.skyd

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27 Feb 2023 21:41:58,189 INFO : Updating dataFileUrl...

27 Feb 2023 21:41:58,189 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/04-Value%20assignment%20secondary%20calibrator/xar/experiments_and_runs.xar.exploded/Run151839/220809_ApoE_HoofnagleLab_Value%20assignment%20secondary%20calibrator_Day%202_2023-02-27_14-08-30.sky.zip

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27 Feb 2023 21:41:58,191 INFO : Updating dataFileUrls for run 220811_ApoE_HoofnagleLab_Value assignment secondary calibrator_Day 3_2023-02-27_14-08-54.sky.zip; targetedms run ID 153814

27 Feb 2023 21:41:58,191 INFO : Updating dataFileUrl...

27 Feb 2023 21:41:58,191 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/04-Value%20assignment%20secondary%20calibrator/xar/experiments_and_runs.xar.exploded/Run151840/220811_ApoE_HoofnagleLab_Value%20assignment%20secondary%20calibrator_Day%203_2023-02-27_14-08-54/220811_ApoE_HoofnagleLab_Value%20assignment%20secondary%20calibrator_Day%203.skyd

27 Feb 2023 21:41:58,191 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/TPAD2.0%20-%20ApoE%20Assay%20Paper/04-Value%20assignment%20secondary%20calibrator/@files/220811_ApoE_HoofnagleLab_Value%20assignment%20secondary%20calibrator_Day%203_2023-02-27_14-08-54/220811_ApoE_HoofnagleLab_Value%20assignment%20secondary%20calibrator_Day%203.skyd

27 Feb 2023 21:41:58,193 INFO : Updating dataFileUrl...

27 Feb 2023 21:41:58,193 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TPAD2.0%20-%20ApoE%20Assay%20Paper_f8ac1c87-9957-103b-b327-fea6ddf5f3bc/_temp__2023-02-27_21-40-32/export/subfolders/04-Value%20assignment%20secondary%20calibrator/xar/experiments_and_runs.xar.exploded/Run151840/220811_ApoE_HoofnagleLab_Value%20assignment%20secondary%20calibrator_Day%203_2023-02-27_14-08-54.sky.zip

27 Feb 2023 21:41:58,193 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/TPAD2.0%20-%20ApoE%20Assay%20Paper/04-Value%20assignment%20secondary%20calibrator/@files/220811_ApoE_HoofnagleLab_Value%20assignment%20secondary%20calibrator_Day%203_2023-02-27_14-08-54.sky.zip

27 Feb 2023 21:41:58,198 INFO : Hiding the Data Pipeline tab.

27 Feb 2023 21:41:58,215 INFO : Creating a new versioned URL for the previous copy of the data: lcmsapoEcsf_v1

27 Feb 2023 21:41:58,219 INFO : Setting the short access URL on the previous copy to lcmsapoEcsf_v1

27 Feb 2023 21:41:58,219 INFO : Removing DOI from the previous copy

27 Feb 2023 21:41:58,222 INFO : Updating Submission. Setting copiedExperimentId to 1579

27 Feb 2023 21:41:58,369 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'