05 Mar 2023 13:49:16,518 INFO : Copying experiment "PRM quantification of MCS proteins and viral proteins in HCMV virus microenvironment" from folder /Princeton University - Cristea Lab/VME MCS PRM to /Panorama Public/2023/Princeton University Cristea Lab - VME MCS PRM
05 Mar 2023 13:49:16,518 INFO : =======================================
05 Mar 2023 13:49:16,535 DEBUG: Resetting Job ID: 8e77670c-9dcc-103b-b327-fea6ddf5f3bc
05 Mar 2023 13:49:16,567 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
05 Mar 2023 13:49:16,567 INFO :
05 Mar 2023 13:49:16,567 INFO : Exporting experiment.
05 Mar 2023 14:01:10,084 INFO : Exporting files metadata.
05 Mar 2023 14:01:10,084 DEBUG: [/Princeton University - Cristea Lab/VME MCS PRM] Writing files metadata to /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Princeton University Cristea Lab - VME MCS PRM_8e7766ef-9dcc-103b-b327-fea6ddf5f3bc/_temp__2023-03-05_13-49-15/export
05 Mar 2023 14:01:10,126 INFO :
05 Mar 2023 14:01:10,127 INFO : Experiment export completed successfully.
05 Mar 2023 14:01:10,127 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
05 Mar 2023 14:01:13,829 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
05 Mar 2023 14:01:13,829 INFO :
05 Mar 2023 14:01:13,829 INFO : Importing experiment.
05 Mar 2023 14:01:13,839 DEBUG: [/Panorama Public/2023/Princeton University Cristea Lab - VME MCS PRM] Importing folder properties from: /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Princeton University Cristea Lab - VME MCS PRM_8e7766ef-9dcc-103b-b327-fea6ddf5f3bc/_temp__2023-03-05_13-49-15/export
05 Mar 2023 14:01:13,840 INFO : Loading folder properties (folder type, settings and active modules)
05 Mar 2023 14:01:13,840 DEBUG: [/Panorama Public/2023/Princeton University Cristea Lab - VME MCS PRM] Folder type: Targeted MS
05 Mar 2023 14:01:13,841 DEBUG: [/Panorama Public/2023/Princeton University Cristea Lab - VME MCS PRM] Active modules: Internal, API, Pipeline, Wiki, MS2, TargetedMS, Core, Issues, Experiment, Assay, FileContent, PanoramaPublic, Search, Announcements, Query
05 Mar 2023 14:01:13,923 INFO : Done importing folder properties (folder type, settings and active modules)
05 Mar 2023 14:01:13,924 INFO : Loading container specific module properties
05 Mar 2023 14:01:13,935 INFO : Done importing container specific module properties
05 Mar 2023 14:01:13,937 INFO : Loading grid views
05 Mar 2023 14:01:13,942 INFO : 1 custom view imported
05 Mar 2023 14:01:13,942 INFO : Done importing grid views
05 Mar 2023 14:01:13,943 INFO : Loading etl definitions
05 Mar 2023 14:01:13,944 INFO : Loading wikis
05 Mar 2023 14:01:13,945 INFO : 0 wikis imported
05 Mar 2023 14:01:13,945 INFO : Done importing wikis
05 Mar 2023 14:01:13,945 INFO : Starting to copy files
05 Mar 2023 14:03:20,402 INFO : 30 files copied, now copying 20220320_HCMV_MicroEnv_Distal_BR2_01.raw
05 Mar 2023 14:05:25,461 INFO : 42 files copied, now copying 20180803_HCMV_library_F4.raw
05 Mar 2023 14:07:29,948 INFO : 54 files copied, now copying 20220320_HCMV_MicroEnv_Distal_BR1_03.raw
05 Mar 2023 14:09:39,610 INFO : 64 files copied, now copying 20220320_HCMV_MicroEnv_Infected_BR2_03.raw
05 Mar 2023 14:11:47,042 INFO : 77 files copied, now copying 20220320_HCMV_MicroEnv_Distal_BR2_03.raw
05 Mar 2023 14:12:41,200 INFO : 79 files copied, now copying 202203_BS_VMEsubmission_MCS-PRM_REPS.skyl
05 Mar 2023 14:12:46,237 INFO : 85 files copied, now copying Prosit.blib
05 Mar 2023 14:12:51,211 INFO : Copied 92 files
05 Mar 2023 14:12:51,211 INFO : Ensuring exp.data rows exist for imported files
05 Mar 2023 14:12:53,083 INFO : Starting Sample Type and Data Class import
05 Mar 2023 14:12:53,083 INFO : No types XAR file to process.
05 Mar 2023 14:12:53,083 INFO : Finished importing Sample Types and Data Classes
05 Mar 2023 14:12:53,084 INFO : Loading xar
05 Mar 2023 14:12:56,034 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-11225:TargetedMS.ImportSkyZip'
05 Mar 2023 14:12:56,036 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-11225:TargetedMS.ImportSkyZip.Core'
05 Mar 2023 14:12:56,038 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-11225:TargetedMS.ImportSkyZip.Output'
05 Mar 2023 14:12:56,038 DEBUG: Protocol import complete
05 Mar 2023 14:12:56,040 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-11225:PRM+quantification+of+MCS+proteins+in+HCMV+virus+microenvironment'
05 Mar 2023 14:12:56,040 DEBUG: Experiment/Run group import complete
05 Mar 2023 14:12:56,049 DEBUG: Protocol action set import complete
05 Mar 2023 14:12:56,059 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11225:TargetedMS.ImportSkyZip'
05 Mar 2023 14:12:56,065 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11225:513637d8-523b-103b-b846-fea6ddf50e04'
05 Mar 2023 14:12:56,069 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11225:5136371a-523b-103b-b846-fea6ddf50e04'
05 Mar 2023 14:12:56,069 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11225:TargetedMS.ImportSkyZip.Core'
05 Mar 2023 14:12:56,071 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11225:TargetedMS.ImportSkyZip.Output'
05 Mar 2023 14:12:56,071 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11225:5136393a-523b-103b-b846-fea6ddf50e04'
05 Mar 2023 14:12:56,077 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11225:TargetedMS.ImportSkyZip'
05 Mar 2023 14:12:56,081 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11225:ca3077fc-99d4-103b-b327-fea6ddf5f3bc'
05 Mar 2023 14:12:56,084 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11225:ca3077d5-99d4-103b-b327-fea6ddf5f3bc'
05 Mar 2023 14:12:56,084 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11225:TargetedMS.ImportSkyZip.Core'
05 Mar 2023 14:12:56,086 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11225:TargetedMS.ImportSkyZip.Output'
05 Mar 2023 14:12:56,086 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11225:ca307886-99d4-103b-b327-fea6ddf5f3bc'
05 Mar 2023 14:12:56,089 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Princeton%20University%20Cristea%20Lab%20-%20VME%20MCS%20PRM_8e7766ef-9dcc-103b-b327-fea6ddf5f3bc/_temp__2023-03-05_13-49-15/export/xar/experiments_and_runs.xar.exploded/Run146696/202203_BS_VMEsubmission_MCS-PRM_REPS_2022-11-29_12-16-49/202203_BS_VMEsubmission_MCS-PRM_REPS.skyd into the system
05 Mar 2023 14:12:56,090 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Princeton%20University%20Cristea%20Lab%20-%20VME%20MCS%20PRM_8e7766ef-9dcc-103b-b327-fea6ddf5f3bc/_temp__2023-03-05_13-49-15/export/xar/experiments_and_runs.xar.exploded/Run146696/202203_BS_VMEsubmission_MCS-PRM_REPS_2022-11-29_12-16-49/202203_BS_VMEsubmission_MCS-PRM_REPS.skyd into the system
05 Mar 2023 14:12:56,090 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Princeton%20University%20Cristea%20Lab%20-%20VME%20MCS%20PRM_8e7766ef-9dcc-103b-b327-fea6ddf5f3bc/_temp__2023-03-05_13-49-15/export/xar/experiments_and_runs.xar.exploded/Run146696/202203_BS_VMEsubmission_MCS-PRM_REPS_2022-11-29_12-16-49.sky.zip into the system
05 Mar 2023 14:12:56,091 INFO : Starting import from 202203_BS_VMEsubmission_MCS-PRM_REPS_2022-11-29_12-16-49.sky.zip
05 Mar 2023 14:12:56,094 INFO : Starting to import Skyline document from 202203_BS_VMEsubmission_MCS-PRM_REPS_2022-11-29_12-16-49.sky.zip
05 Mar 2023 14:12:56,097 INFO : Expanding human_herpesvirus_background.protdb
05 Mar 2023 14:12:58,454 INFO : Expanding 202203_BS_VMEsubmission_MCS-PRM_REPS.blib
05 Mar 2023 14:12:59,727 INFO : Expanding 202203_BS_VMEsubmission_MCS-PRM_REPS.skyd
05 Mar 2023 14:12:59,809 INFO : Expanding 202203_BS_VMEsubmission_MCS-PRM_REPS.sky.view
05 Mar 2023 14:12:59,811 INFO : Expanding 202203_BS_VMEsubmission_MCS-PRM_REPS.sky
05 Mar 2023 14:12:59,826 INFO : Expanding 202203_BS_VMEsubmission_MCS-PRM_REPS.skyl
05 Mar 2023 14:12:59,844 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13
05 Mar 2023 14:12:59,851 INFO : 1% Done
05 Mar 2023 14:12:59,963 DEBUG: Starting to load chromatogram headers
05 Mar 2023 14:12:59,965 DEBUG: Done loading chromatogram headers
05 Mar 2023 14:13:00,106 INFO : Inserting sp|Q96QV6|H2A1A_HUMAN (MS1 only)
05 Mar 2023 14:13:00,114 INFO : 2% Done
05 Mar 2023 14:13:00,132 DEBUG: Total peptides inserted: 1
05 Mar 2023 14:13:00,132 INFO : Inserting sp|Q96A08|H2B1A_HUMAN (MS1 only)
05 Mar 2023 14:13:00,148 DEBUG: Total peptides inserted: 1
05 Mar 2023 14:13:00,148 INFO : Inserting sp|P07437|TBB5_HUMAN
05 Mar 2023 14:13:00,162 DEBUG: Total peptides inserted: 1
05 Mar 2023 14:13:00,162 INFO : Inserting UL122
05 Mar 2023 14:13:00,168 INFO : 3% Done
05 Mar 2023 14:13:00,176 DEBUG: Total peptides inserted: 1
05 Mar 2023 14:13:00,176 INFO : Inserting UL13
05 Mar 2023 14:13:00,201 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:00,201 INFO : Inserting UL37
05 Mar 2023 14:13:00,206 INFO : 4% Done
05 Mar 2023 14:13:00,215 DEBUG: Total peptides inserted: 1
05 Mar 2023 14:13:00,215 INFO : Inserting US9
05 Mar 2023 14:13:00,247 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:00,248 INFO : 5% Done
05 Mar 2023 14:13:00,248 INFO : Inserting DBP
05 Mar 2023 14:13:00,278 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:00,278 INFO : Inserting UL26
05 Mar 2023 14:13:00,283 INFO : 6% Done
05 Mar 2023 14:13:00,301 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:00,301 INFO : Inserting UL32
05 Mar 2023 14:13:00,318 INFO : 7% Done
05 Mar 2023 14:13:00,339 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:00,340 INFO : Inserting UL97
05 Mar 2023 14:13:00,361 INFO : 8% Done
05 Mar 2023 14:13:00,373 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:00,373 INFO : Inserting UL99
05 Mar 2023 14:13:00,390 INFO : 9% Done
05 Mar 2023 14:13:00,415 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:00,415 INFO : Inserting UL52
05 Mar 2023 14:13:00,431 INFO : 10% Done
05 Mar 2023 14:13:00,443 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:00,443 INFO : Inserting sp|Q8IWA4|MFN1_HUMAN
05 Mar 2023 14:13:00,469 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:00,469 INFO : Inserting sp|O95140|MFN2_HUMAN
05 Mar 2023 14:13:00,474 INFO : 11% Done
05 Mar 2023 14:13:00,493 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:00,493 INFO : Inserting sp|P21796|VDAC1_HUMAN
05 Mar 2023 14:13:00,509 INFO : 12% Done
05 Mar 2023 14:13:00,522 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:00,522 INFO : Inserting sp|P45880|VDAC2_HUMAN
05 Mar 2023 14:13:00,543 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:00,543 INFO : Inserting sp|Q9Y277|VDAC3_HUMAN
05 Mar 2023 14:13:00,547 INFO : 13% Done
05 Mar 2023 14:13:00,568 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:00,568 INFO : Inserting ITPR1
05 Mar 2023 14:13:00,589 INFO : 14% Done
05 Mar 2023 14:13:00,626 DEBUG: Total peptides inserted: 3
05 Mar 2023 14:13:00,627 INFO : 15% Done
05 Mar 2023 14:13:00,627 INFO : Inserting sp|Q14573|ITPR3_HUMAN
05 Mar 2023 14:13:00,675 INFO : 16% Done
05 Mar 2023 14:13:00,711 DEBUG: Total peptides inserted: 3
05 Mar 2023 14:13:00,711 INFO : Inserting sp|Q9Y3D6|FIS1_HUMAN
05 Mar 2023 14:13:00,728 INFO : 17% Done
05 Mar 2023 14:13:00,740 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:00,741 INFO : Inserting sp|Q9GZY8|MFF_HUMAN
05 Mar 2023 14:13:00,796 INFO : 18% Done
05 Mar 2023 14:13:00,824 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:00,824 INFO : Inserting sp|Q8TC07|TBC15_HUMAN
05 Mar 2023 14:13:00,835 INFO : 19% Done
05 Mar 2023 14:13:00,880 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:00,880 INFO : Inserting sp|O60313|OPA1_HUMAN
05 Mar 2023 14:13:00,885 INFO : 20% Done
05 Mar 2023 14:13:00,917 INFO : 21% Done
05 Mar 2023 14:13:00,926 DEBUG: Total peptides inserted: 3
05 Mar 2023 14:13:00,926 INFO : Inserting sp|O00429|DNM1L_HUMAN
05 Mar 2023 14:13:00,956 INFO : 22% Done
05 Mar 2023 14:13:01,003 INFO : 23% Done
05 Mar 2023 14:13:01,056 DEBUG: Total peptides inserted: 5
05 Mar 2023 14:13:01,056 INFO : Inserting sp|P50570|DYN2_HUMAN
05 Mar 2023 14:13:01,062 INFO : 24% Done
05 Mar 2023 14:13:01,102 DEBUG: Total peptides inserted: 3
05 Mar 2023 14:13:01,102 INFO : Inserting sp|Q27J81|INF2_HUMAN
05 Mar 2023 14:13:01,113 INFO : 25% Done
05 Mar 2023 14:13:01,179 DEBUG: Total peptides inserted: 4
05 Mar 2023 14:13:01,179 INFO : Inserting sp|Q8IXI2|MIRO1_HUMAN
05 Mar 2023 14:13:01,198 INFO : 26% Done
05 Mar 2023 14:13:01,254 INFO : 27% Done
05 Mar 2023 14:13:01,327 INFO : 28% Done
05 Mar 2023 14:13:01,348 DEBUG: Total peptides inserted: 5
05 Mar 2023 14:13:01,348 INFO : Inserting sp|Q8IXI1|MIRO2_HUMAN
05 Mar 2023 14:13:01,374 INFO : 29% Done
05 Mar 2023 14:13:01,410 DEBUG: Total peptides inserted: 3
05 Mar 2023 14:13:01,410 INFO : Inserting sp|P38646|GRP75_HUMAN
05 Mar 2023 14:13:01,435 INFO : 30% Done
05 Mar 2023 14:13:01,467 INFO : 31% Done
05 Mar 2023 14:13:01,481 DEBUG: Total peptides inserted: 4
05 Mar 2023 14:13:01,481 INFO : Inserting sp|Q96TC7|RMD3_HUMAN
05 Mar 2023 14:13:01,515 DEBUG: Total peptides inserted: 3
05 Mar 2023 14:13:01,517 INFO : 32% Done
05 Mar 2023 14:13:01,517 INFO : Inserting sp|Q96LZ7|RMD2_HUMAN
05 Mar 2023 14:13:01,560 INFO : 33% Done
05 Mar 2023 14:13:01,629 INFO : 34% Done
05 Mar 2023 14:13:01,689 DEBUG: Total peptides inserted: 3
05 Mar 2023 14:13:01,689 INFO : Inserting sp|P49841|GSK3B_HUMAN
05 Mar 2023 14:13:01,698 INFO : 35% Done
05 Mar 2023 14:13:01,752 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:01,752 INFO : Inserting sp|Q13148|TADBP_HUMAN
05 Mar 2023 14:13:01,758 INFO : 36% Done
05 Mar 2023 14:13:01,788 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:01,789 INFO : Inserting sp|P51572|BAP31_HUMAN
05 Mar 2023 14:13:01,795 INFO : 37% Done
05 Mar 2023 14:13:01,822 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:01,822 INFO : Inserting sp|Q86VP3|PACS2_HUMAN
05 Mar 2023 14:13:01,881 INFO : 38% Done
05 Mar 2023 14:13:01,924 INFO : 39% Done
05 Mar 2023 14:13:01,957 DEBUG: Total peptides inserted: 4
05 Mar 2023 14:13:01,957 INFO : Inserting sp|Q6ZNE5|BAKOR_HUMAN
05 Mar 2023 14:13:01,964 INFO : 40% Done
05 Mar 2023 14:13:02,009 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:02,009 INFO : Inserting sp|P56962|STX17_HUMAN
05 Mar 2023 14:13:02,015 INFO : 41% Done
05 Mar 2023 14:13:02,045 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:02,045 INFO : Inserting sp|Q9BV40|VAMP8_HUMAN
05 Mar 2023 14:13:02,055 INFO : 42% Done
05 Mar 2023 14:13:02,113 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:02,115 INFO : 43% Done
05 Mar 2023 14:13:02,115 INFO : Inserting sp|Q96GC9|VMP1_HUMAN
05 Mar 2023 14:13:02,143 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:02,143 INFO : Inserting sp|Q9P2E9|RRBP1_HUMAN
05 Mar 2023 14:13:02,148 INFO : 44% Done
05 Mar 2023 14:13:02,191 DEBUG: Total peptides inserted: 3
05 Mar 2023 14:13:02,191 INFO : Inserting sp|P57105|SYJ2B_HUMAN
05 Mar 2023 14:13:02,195 INFO : 45% Done
05 Mar 2023 14:13:02,219 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:02,219 INFO : Inserting sp|Q9P0L0-2|VAPA_HUMAN
05 Mar 2023 14:13:02,224 INFO : 46% Done
05 Mar 2023 14:13:02,258 INFO : 47% Done
05 Mar 2023 14:13:02,287 DEBUG: Total peptides inserted: 4
05 Mar 2023 14:13:02,287 INFO : Inserting sp|O95292|VAPB_HUMAN
05 Mar 2023 14:13:02,292 INFO : 48% Done
05 Mar 2023 14:13:02,333 INFO : 49% Done
05 Mar 2023 14:13:02,363 DEBUG: Total peptides inserted: 4
05 Mar 2023 14:13:02,363 INFO : Inserting sp|Q8NHP6|MSPD2_HUMAN
05 Mar 2023 14:13:02,368 INFO : 50% Done
05 Mar 2023 14:13:02,414 INFO : 51% Done
05 Mar 2023 14:13:02,452 DEBUG: Total peptides inserted: 4
05 Mar 2023 14:13:02,452 INFO : Inserting sp|Q14849|STAR3_HUMAN
05 Mar 2023 14:13:02,458 INFO : 52% Done
05 Mar 2023 14:13:02,506 DEBUG: Total peptides inserted: 3
05 Mar 2023 14:13:02,506 INFO : Inserting sp|O95772|MENTO_HUMAN
05 Mar 2023 14:13:02,511 INFO : 53% Done
05 Mar 2023 14:13:02,543 DEBUG: Total peptides inserted: 3
05 Mar 2023 14:13:02,543 INFO : Inserting sp|O15118|NPC1_HUMAN
05 Mar 2023 14:13:02,549 INFO : 54% Done
05 Mar 2023 14:13:02,579 INFO : 55% Done
05 Mar 2023 14:13:02,588 DEBUG: Total peptides inserted: 3
05 Mar 2023 14:13:02,588 INFO : Inserting sp|P08133|ANXA6_HUMAN
05 Mar 2023 14:13:02,620 INFO : 56% Done
05 Mar 2023 14:13:02,634 DEBUG: Total peptides inserted: 3
05 Mar 2023 14:13:02,634 INFO : Inserting sp|Q9BXW6|OSBL1_HUMAN
05 Mar 2023 14:13:02,642 INFO : 57% Done
05 Mar 2023 14:13:02,701 DEBUG: Total peptides inserted: 3
05 Mar 2023 14:13:02,701 INFO : Inserting sp|Q9H0X9|OSBL5_HUMAN
05 Mar 2023 14:13:02,708 INFO : 58% Done
05 Mar 2023 14:13:02,755 INFO : 59% Done
05 Mar 2023 14:13:02,825 INFO : 60% Done
05 Mar 2023 14:13:02,847 DEBUG: Total peptides inserted: 4
05 Mar 2023 14:13:02,847 INFO : Inserting sp|Q5T4F4|ZFY27_HUMAN
05 Mar 2023 14:13:02,855 INFO : 61% Done
05 Mar 2023 14:13:02,888 INFO : 62% Done
05 Mar 2023 14:13:02,984 INFO : 63% Done
05 Mar 2023 14:13:03,024 DEBUG: Total peptides inserted: 4
05 Mar 2023 14:13:03,024 INFO : Inserting sp|Q8NEN9|PDZD8_HUMAN
05 Mar 2023 14:13:03,029 INFO : 64% Done
05 Mar 2023 14:13:03,055 INFO : 65% Done
05 Mar 2023 14:13:03,140 INFO : 67% Done
05 Mar 2023 14:13:03,186 DEBUG: Total peptides inserted: 4
05 Mar 2023 14:13:03,186 INFO : Inserting sp|P51149|RAB7A_HUMAN
05 Mar 2023 14:13:03,220 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:03,220 INFO : Inserting sp|P51151|RAB9A_HUMAN
05 Mar 2023 14:13:03,235 INFO : 68% Done
05 Mar 2023 14:13:03,294 INFO : 70% Done
05 Mar 2023 14:13:03,357 DEBUG: Total peptides inserted: 3
05 Mar 2023 14:13:03,357 INFO : Inserting sp|O95197|RTN3_HUMAN
05 Mar 2023 14:13:03,366 INFO : 71% Done
05 Mar 2023 14:13:03,418 DEBUG: Total peptides inserted: 3
05 Mar 2023 14:13:03,418 INFO : Inserting sp|P00533|EGFR_HUMAN
05 Mar 2023 14:13:03,428 INFO : 72% Done
05 Mar 2023 14:13:03,461 INFO : 73% Done
05 Mar 2023 14:13:03,487 DEBUG: Total peptides inserted: 3
05 Mar 2023 14:13:03,487 INFO : Inserting sp|P18031|PTN1_HUMAN
05 Mar 2023 14:13:03,499 INFO : 74% Done
05 Mar 2023 14:13:03,519 DEBUG: Total peptides inserted: 3
05 Mar 2023 14:13:03,519 INFO : Inserting sp|P04083|ANXA1_HUMAN
05 Mar 2023 14:13:03,572 DEBUG: Total peptides inserted: 4
05 Mar 2023 14:13:03,574 INFO : 75% Done
05 Mar 2023 14:13:03,574 INFO : Inserting sp|O94876|TMCC1_HUMAN
05 Mar 2023 14:13:03,604 INFO : 76% Done
05 Mar 2023 14:13:03,646 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:03,646 INFO : Inserting sp|Q9ULV4|COR1C_HUMAN
05 Mar 2023 14:13:03,661 INFO : 77% Done
05 Mar 2023 14:13:03,686 DEBUG: Total peptides inserted: 3
05 Mar 2023 14:13:03,686 INFO : Inserting sp|Q9Y5P4|C43BP_HUMAN
05 Mar 2023 14:13:03,707 INFO : 78% Done
05 Mar 2023 14:13:03,716 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:03,716 INFO : Inserting sp|Q9BZF1|OSBL8_HUMAN
05 Mar 2023 14:13:03,737 INFO : 79% Done
05 Mar 2023 14:13:03,765 DEBUG: Total peptides inserted: 3
05 Mar 2023 14:13:03,765 INFO : Inserting sp|Q9BSJ8|ESYT1_HUMAN
05 Mar 2023 14:13:03,771 INFO : 80% Done
05 Mar 2023 14:13:03,818 DEBUG: Total peptides inserted: 3
05 Mar 2023 14:13:03,818 INFO : Inserting ESYT2
05 Mar 2023 14:13:03,844 INFO : 82% Done
05 Mar 2023 14:13:03,928 DEBUG: Total peptides inserted: 3
05 Mar 2023 14:13:03,930 INFO : 83% Done
05 Mar 2023 14:13:03,930 INFO : Inserting sp|Q13586|STIM1_HUMAN
05 Mar 2023 14:13:03,963 INFO : 84% Done
05 Mar 2023 14:13:03,974 DEBUG: Total peptides inserted: 3
05 Mar 2023 14:13:03,974 INFO : Inserting sp|Q86TL2|STIMA_HUMAN
05 Mar 2023 14:13:04,019 INFO : 85% Done
05 Mar 2023 14:13:04,070 INFO : 86% Done
05 Mar 2023 14:13:04,094 DEBUG: Total peptides inserted: 3
05 Mar 2023 14:13:04,094 INFO : Inserting sp|Q5T8D3|ACBD5_HUMAN
05 Mar 2023 14:13:04,111 INFO : 87% Done
05 Mar 2023 14:13:04,167 INFO : 88% Done
05 Mar 2023 14:13:04,221 DEBUG: Total peptides inserted: 3
05 Mar 2023 14:13:04,221 INFO : Inserting sp|Q8NC06|ACBD4_HUMAN
05 Mar 2023 14:13:04,235 INFO : 89% Done
05 Mar 2023 14:13:04,278 INFO : 90% Done
05 Mar 2023 14:13:04,290 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:04,291 INFO : Inserting sp|Q9UBP0|SPAST_HUMAN
05 Mar 2023 14:13:04,323 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:04,323 INFO : Inserting sp|P53990|IST1_HUMAN
05 Mar 2023 14:13:04,329 INFO : 91% Done
05 Mar 2023 14:13:04,363 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:04,363 INFO : Inserting sp|Q7LBR1|CHM1B_HUMAN
05 Mar 2023 14:13:04,386 INFO : 92% Done
05 Mar 2023 14:13:04,400 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:04,400 INFO : Inserting sp|Q16891|MIC60_HUMAN
05 Mar 2023 14:13:04,415 INFO : 93% Done
05 Mar 2023 14:13:04,425 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:04,425 INFO : Inserting sp|Q9Y512|SAM50_HUMAN
05 Mar 2023 14:13:04,457 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:04,457 INFO : Inserting sp|Q13505|MTX1_HUMAN
05 Mar 2023 14:13:04,463 INFO : 94% Done
05 Mar 2023 14:13:04,488 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:04,488 INFO : Inserting sp|O75431|MTX2_HUMAN
05 Mar 2023 14:13:04,500 INFO : 95% Done
05 Mar 2023 14:13:04,508 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:04,508 INFO : Inserting sp|Q9BUR5|MIC26_HUMAN
05 Mar 2023 14:13:04,529 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:04,529 INFO : Inserting sp|Q9NX63|MIC19_HUMAN
05 Mar 2023 14:13:04,534 INFO : 96% Done
05 Mar 2023 14:13:04,557 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:04,557 INFO : Inserting sp|Q9BRQ6|MIC25_HUMAN
05 Mar 2023 14:13:04,576 INFO : 97% Done
05 Mar 2023 14:13:04,616 DEBUG: Total peptides inserted: 3
05 Mar 2023 14:13:04,616 INFO : Inserting MIC2
05 Mar 2023 14:13:04,622 INFO : 98% Done
05 Mar 2023 14:13:04,651 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:04,651 INFO : Done parsing Skyline document.
05 Mar 2023 14:13:06,492 INFO : Creating and populating temp tables for Proportion values
05 Mar 2023 14:13:06,562 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
05 Mar 2023 14:13:06,629 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
05 Mar 2023 14:13:06,675 INFO : Cleaning up temp tables
05 Mar 2023 14:13:06,963 INFO : Completed import of Skyline document from 202203_BS_VMEsubmission_MCS-PRM_REPS_2022-11-29_12-16-49.sky.zip
05 Mar 2023 14:13:06,965 INFO : 100% Done
05 Mar 2023 14:13:06,968 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Princeton%20University%20Cristea%20Lab%20-%20VME%20MCS%20PRM_8e7766ef-9dcc-103b-b327-fea6ddf5f3bc/_temp__2023-03-05_13-49-15/export/xar/experiments_and_runs.xar.exploded/Run146696/202203_BS_VMEsubmission_MCS-PRM_REPS_2022-11-29_12-16-49.sky.zip into the system
05 Mar 2023 14:13:06,969 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Princeton%20University%20Cristea%20Lab%20-%20VME%20MCS%20PRM_8e7766ef-9dcc-103b-b327-fea6ddf5f3bc/_temp__2023-03-05_13-49-15/export/xar/experiments_and_runs.xar.exploded/Run151989/HCMV_PRM_Assay_BS_20230217_Panorama_v2_2023-02-28_15-21-15/HCMV_PRM_Assay_BS_20230217_Panorama_v2.skyd into the system
05 Mar 2023 14:13:06,969 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Princeton%20University%20Cristea%20Lab%20-%20VME%20MCS%20PRM_8e7766ef-9dcc-103b-b327-fea6ddf5f3bc/_temp__2023-03-05_13-49-15/export/xar/experiments_and_runs.xar.exploded/Run151989/HCMV_PRM_Assay_BS_20230217_Panorama_v2_2023-02-28_15-21-15/HCMV_PRM_Assay_BS_20230217_Panorama_v2.skyd into the system
05 Mar 2023 14:13:06,969 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Princeton%20University%20Cristea%20Lab%20-%20VME%20MCS%20PRM_8e7766ef-9dcc-103b-b327-fea6ddf5f3bc/_temp__2023-03-05_13-49-15/export/xar/experiments_and_runs.xar.exploded/Run151989/HCMV_PRM_Assay_BS_20230217_Panorama_v2_2023-02-28_15-21-15.sky.zip into the system
05 Mar 2023 14:13:06,970 INFO : Starting import from HCMV_PRM_Assay_BS_20230217_Panorama_v2_2023-02-28_15-21-15.sky.zip
05 Mar 2023 14:13:06,971 INFO : Starting to import Skyline document from HCMV_PRM_Assay_BS_20230217_Panorama_v2_2023-02-28_15-21-15.sky.zip
05 Mar 2023 14:13:06,975 INFO : Expanding HCMV_Fractionated_Library_02272023_UPDATED.blib
05 Mar 2023 14:13:09,197 INFO : Expanding Prosit.blib
05 Mar 2023 14:13:09,199 INFO : Expanding HCMV_PRM_Assay_BS_20230217_Panorama_v2.skyd
05 Mar 2023 14:13:09,300 INFO : Expanding HCMV_PRM_Assay_BS_20230217_Panorama_v2.sky.view
05 Mar 2023 14:13:09,301 INFO : Expanding HCMV_PRM_Assay_BS_20230217_Panorama_v2.sky
05 Mar 2023 14:13:09,311 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13
05 Mar 2023 14:13:09,314 INFO : 1% Done
05 Mar 2023 14:13:09,387 DEBUG: Starting to load chromatogram headers
05 Mar 2023 14:13:09,389 DEBUG: Done loading chromatogram headers
05 Mar 2023 14:13:09,527 INFO : Inserting DBP
05 Mar 2023 14:13:09,536 INFO : 3% Done
05 Mar 2023 14:13:09,564 DEBUG: Total peptides inserted: 1
05 Mar 2023 14:13:09,564 INFO : Inserting gM
05 Mar 2023 14:13:09,580 DEBUG: Total peptides inserted: 1
05 Mar 2023 14:13:09,580 INFO : Inserting MCP
05 Mar 2023 14:13:09,588 INFO : 4% Done
05 Mar 2023 14:13:09,619 INFO : 5% Done
05 Mar 2023 14:13:09,632 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:09,632 INFO : Inserting NEC1
05 Mar 2023 14:13:09,651 INFO : 6% Done
05 Mar 2023 14:13:09,667 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:09,667 INFO : Inserting RIR1
05 Mar 2023 14:13:09,674 INFO : 7% Done
05 Mar 2023 14:13:09,687 DEBUG: Total peptides inserted: 1
05 Mar 2023 14:13:09,687 INFO : Inserting TRM1
05 Mar 2023 14:13:09,693 INFO : 8% Done
05 Mar 2023 14:13:09,722 INFO : 9% Done
05 Mar 2023 14:13:09,732 DEBUG: Total peptides inserted: 3
05 Mar 2023 14:13:09,732 INFO : Inserting TRM2
05 Mar 2023 14:13:09,755 INFO : 10% Done
05 Mar 2023 14:13:09,766 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:09,766 INFO : Inserting TRM3
05 Mar 2023 14:13:09,771 INFO : 11% Done
05 Mar 2023 14:13:09,801 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:09,802 INFO : 12% Done
05 Mar 2023 14:13:09,802 INFO : Inserting TRX1
05 Mar 2023 14:13:09,811 INFO : 13% Done
05 Mar 2023 14:13:09,841 INFO : 14% Done
05 Mar 2023 14:13:09,853 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:09,853 INFO : Inserting TRX2
05 Mar 2023 14:13:09,860 INFO : 15% Done
05 Mar 2023 14:13:09,883 DEBUG: Total peptides inserted: 1
05 Mar 2023 14:13:09,884 INFO : Inserting UL102
05 Mar 2023 14:13:09,902 INFO : 16% Done
05 Mar 2023 14:13:09,914 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:09,914 INFO : Inserting UL103
05 Mar 2023 14:13:09,919 INFO : 17% Done
05 Mar 2023 14:13:09,946 INFO : 18% Done
05 Mar 2023 14:13:09,959 DEBUG: Total peptides inserted: 3
05 Mar 2023 14:13:09,960 INFO : Inserting UL112/UL113
05 Mar 2023 14:13:09,965 INFO : 19% Done
05 Mar 2023 14:13:09,979 DEBUG: Total peptides inserted: 1
05 Mar 2023 14:13:09,979 INFO : Inserting UL117
05 Mar 2023 14:13:09,992 DEBUG: Total peptides inserted: 1
05 Mar 2023 14:13:09,993 INFO : 20% Done
05 Mar 2023 14:13:09,993 INFO : Inserting UL119/UL118
05 Mar 2023 14:13:10,008 INFO : 21% Done
05 Mar 2023 14:13:10,016 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:10,016 INFO : Inserting UL122
05 Mar 2023 14:13:10,036 INFO : 23% Done
05 Mar 2023 14:13:10,067 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:10,067 INFO : Inserting UL123
05 Mar 2023 14:13:10,082 INFO : 24% Done
05 Mar 2023 14:13:10,096 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:10,096 INFO : Inserting UL13
05 Mar 2023 14:13:10,107 DEBUG: Total peptides inserted: 1
05 Mar 2023 14:13:10,109 INFO : 25% Done
05 Mar 2023 14:13:10,109 INFO : Inserting UL132
05 Mar 2023 14:13:10,141 INFO : 26% Done
05 Mar 2023 14:13:10,154 DEBUG: Total peptides inserted: 3
05 Mar 2023 14:13:10,155 INFO : Inserting UL22A
05 Mar 2023 14:13:10,173 DEBUG: Total peptides inserted: 1
05 Mar 2023 14:13:10,173 INFO : Inserting UL24
05 Mar 2023 14:13:10,178 INFO : 27% Done
05 Mar 2023 14:13:10,191 INFO : 28% Done
05 Mar 2023 14:13:10,200 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:10,200 INFO : Inserting UL25
05 Mar 2023 14:13:10,215 INFO : 29% Done
05 Mar 2023 14:13:10,243 DEBUG: Total peptides inserted: 3
05 Mar 2023 14:13:10,244 INFO : 30% Done
05 Mar 2023 14:13:10,244 INFO : Inserting UL26
05 Mar 2023 14:13:10,262 INFO : 31% Done
05 Mar 2023 14:13:10,276 INFO : 32% Done
05 Mar 2023 14:13:10,286 DEBUG: Total peptides inserted: 3
05 Mar 2023 14:13:10,286 INFO : Inserting UL29
05 Mar 2023 14:13:10,304 INFO : 33% Done
05 Mar 2023 14:13:10,329 DEBUG: Total peptides inserted: 3
05 Mar 2023 14:13:10,329 INFO : Inserting UL31
05 Mar 2023 14:13:10,335 INFO : 34% Done
05 Mar 2023 14:13:10,345 DEBUG: Total peptides inserted: 1
05 Mar 2023 14:13:10,345 INFO : Inserting UL32
05 Mar 2023 14:13:10,349 INFO : 35% Done
05 Mar 2023 14:13:10,362 INFO : 36% Done
05 Mar 2023 14:13:10,378 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:10,378 INFO : Inserting UL34
05 Mar 2023 14:13:10,395 INFO : 37% Done
05 Mar 2023 14:13:10,413 INFO : 38% Done
05 Mar 2023 14:13:10,429 DEBUG: Total peptides inserted: 3
05 Mar 2023 14:13:10,429 INFO : Inserting UL35
05 Mar 2023 14:13:10,444 INFO : 39% Done
05 Mar 2023 14:13:10,454 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:10,454 INFO : Inserting UL36
05 Mar 2023 14:13:10,459 INFO : 40% Done
05 Mar 2023 14:13:10,484 INFO : 41% Done
05 Mar 2023 14:13:10,496 DEBUG: Total peptides inserted: 3
05 Mar 2023 14:13:10,496 INFO : Inserting UL37
05 Mar 2023 14:13:10,514 INFO : 42% Done
05 Mar 2023 14:13:10,528 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:10,528 INFO : Inserting UL38
05 Mar 2023 14:13:10,532 INFO : 43% Done
05 Mar 2023 14:13:10,547 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:10,547 INFO : Inserting UL43
05 Mar 2023 14:13:10,551 INFO : 44% Done
05 Mar 2023 14:13:10,564 INFO : 45% Done
05 Mar 2023 14:13:10,577 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:10,577 INFO : Inserting UL44
05 Mar 2023 14:13:10,595 INFO : 46% Done
05 Mar 2023 14:13:10,629 INFO : 48% Done
05 Mar 2023 14:13:10,658 DEBUG: Total peptides inserted: 3
05 Mar 2023 14:13:10,658 INFO : Inserting UL47
05 Mar 2023 14:13:10,677 INFO : 49% Done
05 Mar 2023 14:13:10,689 INFO : 50% Done
05 Mar 2023 14:13:10,703 DEBUG: Total peptides inserted: 3
05 Mar 2023 14:13:10,703 INFO : Inserting UL48
05 Mar 2023 14:13:10,708 INFO : 51% Done
05 Mar 2023 14:13:10,739 INFO : 52% Done
05 Mar 2023 14:13:10,752 DEBUG: Total peptides inserted: 3
05 Mar 2023 14:13:10,752 INFO : Inserting UL52
05 Mar 2023 14:13:10,757 INFO : 53% Done
05 Mar 2023 14:13:10,781 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:10,781 INFO : Inserting UL54
05 Mar 2023 14:13:10,788 INFO : 54% Done
05 Mar 2023 14:13:10,806 INFO : 55% Done
05 Mar 2023 14:13:10,824 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:10,824 INFO : Inserting UL69
05 Mar 2023 14:13:10,830 INFO : 56% Done
05 Mar 2023 14:13:10,856 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:10,856 INFO : Inserting UL71
05 Mar 2023 14:13:10,862 INFO : 57% Done
05 Mar 2023 14:13:10,886 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:10,887 INFO : 58% Done
05 Mar 2023 14:13:10,887 INFO : Inserting UL80
05 Mar 2023 14:13:10,908 INFO : 59% Done
05 Mar 2023 14:13:10,922 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:10,922 INFO : Inserting UL82
05 Mar 2023 14:13:10,928 INFO : 60% Done
05 Mar 2023 14:13:10,958 INFO : 61% Done
05 Mar 2023 14:13:10,970 DEBUG: Total peptides inserted: 3
05 Mar 2023 14:13:10,970 INFO : Inserting UL83
05 Mar 2023 14:13:10,975 INFO : 62% Done
05 Mar 2023 14:13:10,993 INFO : 63% Done
05 Mar 2023 14:13:11,025 INFO : 64% Done
05 Mar 2023 14:13:11,056 DEBUG: Total peptides inserted: 3
05 Mar 2023 14:13:11,056 INFO : Inserting UL84
05 Mar 2023 14:13:11,062 INFO : 65% Done
05 Mar 2023 14:13:11,075 DEBUG: Total peptides inserted: 1
05 Mar 2023 14:13:11,075 INFO : Inserting UL88
05 Mar 2023 14:13:11,081 INFO : 66% Done
05 Mar 2023 14:13:11,097 DEBUG: Total peptides inserted: 1
05 Mar 2023 14:13:11,097 INFO : Inserting UL94
05 Mar 2023 14:13:11,105 INFO : 67% Done
05 Mar 2023 14:13:11,123 DEBUG: Total peptides inserted: 1
05 Mar 2023 14:13:11,123 INFO : Inserting UL97
05 Mar 2023 14:13:11,128 INFO : 68% Done
05 Mar 2023 14:13:11,161 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:11,162 INFO : 69% Done
05 Mar 2023 14:13:11,162 INFO : Inserting UL98
05 Mar 2023 14:13:11,180 INFO : 70% Done
05 Mar 2023 14:13:11,190 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:11,190 INFO : Inserting US22
05 Mar 2023 14:13:11,198 INFO : 71% Done
05 Mar 2023 14:13:11,223 INFO : 72% Done
05 Mar 2023 14:13:11,238 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:11,238 INFO : Inserting US23
05 Mar 2023 14:13:11,258 INFO : 73% Done
05 Mar 2023 14:13:11,270 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:11,270 INFO : Inserting US9
05 Mar 2023 14:13:11,275 INFO : 74% Done
05 Mar 2023 14:13:11,298 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:11,298 INFO : Inserting sp|O43852|CALU_HUMAN
05 Mar 2023 14:13:11,318 INFO : 75% Done
05 Mar 2023 14:13:11,334 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:11,334 INFO : Inserting sp|Q71U36|TBA1A_HUMAN
05 Mar 2023 14:13:11,354 INFO : 78% Done
05 Mar 2023 14:13:11,418 INFO : 79% Done
05 Mar 2023 14:13:11,450 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:11,451 INFO : 80% Done
05 Mar 2023 14:13:11,451 INFO : Inserting sp|P16808|IR10_HCMVA
05 Mar 2023 14:13:11,471 INFO : 81% Done
05 Mar 2023 14:13:11,487 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:11,487 INFO : Inserting CVC2
05 Mar 2023 14:13:11,495 INFO : 82% Done
05 Mar 2023 14:13:11,515 DEBUG: Total peptides inserted: 1
05 Mar 2023 14:13:11,515 INFO : Inserting gL
05 Mar 2023 14:13:11,537 INFO : 83% Done
05 Mar 2023 14:13:11,549 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:11,549 INFO : Inserting GO
05 Mar 2023 14:13:11,554 INFO : 84% Done
05 Mar 2023 14:13:11,565 DEBUG: Total peptides inserted: 1
05 Mar 2023 14:13:11,565 INFO : Inserting SCP
05 Mar 2023 14:13:11,582 DEBUG: Total peptides inserted: 1
05 Mar 2023 14:13:11,582 INFO : Inserting UL104
05 Mar 2023 14:13:11,587 INFO : 85% Done
05 Mar 2023 14:13:11,613 INFO : 86% Done
05 Mar 2023 14:13:11,629 DEBUG: Total peptides inserted: 3
05 Mar 2023 14:13:11,629 INFO : Inserting UL114
05 Mar 2023 14:13:11,638 INFO : 87% Done
05 Mar 2023 14:13:11,669 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:11,669 INFO : Inserting UL128
05 Mar 2023 14:13:11,676 INFO : 88% Done
05 Mar 2023 14:13:11,692 DEBUG: Total peptides inserted: 1
05 Mar 2023 14:13:11,692 INFO : Inserting UL49
05 Mar 2023 14:13:11,700 INFO : 89% Done
05 Mar 2023 14:13:11,720 DEBUG: Total peptides inserted: 1
05 Mar 2023 14:13:11,720 INFO : Inserting UL70
05 Mar 2023 14:13:11,727 INFO : 90% Done
05 Mar 2023 14:13:11,762 INFO : 91% Done
05 Mar 2023 14:13:11,776 DEBUG: Total peptides inserted: 3
05 Mar 2023 14:13:11,777 INFO : Inserting UL76
05 Mar 2023 14:13:11,783 INFO : 92% Done
05 Mar 2023 14:13:11,803 INFO : 93% Done
05 Mar 2023 14:13:11,820 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:11,820 INFO : Inserting UL78
05 Mar 2023 14:13:11,839 DEBUG: Total peptides inserted: 1
05 Mar 2023 14:13:11,839 INFO : Inserting UL79
05 Mar 2023 14:13:11,843 INFO : 94% Done
05 Mar 2023 14:13:11,852 DEBUG: Total peptides inserted: 1
05 Mar 2023 14:13:11,852 INFO : Inserting UL87
05 Mar 2023 14:13:11,866 DEBUG: Total peptides inserted: 1
05 Mar 2023 14:13:11,866 INFO : Inserting UL95
05 Mar 2023 14:13:11,872 INFO : 95% Done
05 Mar 2023 14:13:11,885 DEBUG: Total peptides inserted: 1
05 Mar 2023 14:13:11,885 INFO : Inserting UL99
05 Mar 2023 14:13:11,891 INFO : 96% Done
05 Mar 2023 14:13:11,911 INFO : 97% Done
05 Mar 2023 14:13:11,925 DEBUG: Total peptides inserted: 2
05 Mar 2023 14:13:11,925 INFO : Inserting US13
05 Mar 2023 14:13:11,941 DEBUG: Total peptides inserted: 1
05 Mar 2023 14:13:11,941 INFO : Inserting US15
05 Mar 2023 14:13:11,947 INFO : 98% Done
05 Mar 2023 14:13:11,962 DEBUG: Total peptides inserted: 1
05 Mar 2023 14:13:11,963 INFO : Done parsing Skyline document.
05 Mar 2023 14:13:11,964 INFO : Creating and populating temp tables for Proportion values
05 Mar 2023 14:13:12,029 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
05 Mar 2023 14:13:12,072 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
05 Mar 2023 14:13:12,105 INFO : Cleaning up temp tables
05 Mar 2023 14:13:12,398 INFO : Completed import of Skyline document from HCMV_PRM_Assay_BS_20230217_Panorama_v2_2023-02-28_15-21-15.sky.zip
05 Mar 2023 14:13:12,400 INFO : 100% Done
05 Mar 2023 14:13:12,403 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Princeton%20University%20Cristea%20Lab%20-%20VME%20MCS%20PRM_8e7766ef-9dcc-103b-b327-fea6ddf5f3bc/_temp__2023-03-05_13-49-15/export/xar/experiments_and_runs.xar.exploded/Run151989/HCMV_PRM_Assay_BS_20230217_Panorama_v2_2023-02-28_15-21-15.sky.zip into the system
05 Mar 2023 14:13:12,413 INFO : Done importing xar
05 Mar 2023 14:13:12,414 INFO : Loading pages and webpart properties
05 Mar 2023 14:13:12,493 INFO : Done importing 4 page(s) with 6 webpart(s)
05 Mar 2023 14:13:12,493 INFO : Loading File Browser config
05 Mar 2023 14:13:12,493 INFO : Done importing File Browser config
05 Mar 2023 14:13:12,494 INFO : Starting Sample Status Data import
05 Mar 2023 14:13:12,494 INFO : No sample types XAR file to process.
05 Mar 2023 14:13:12,494 INFO : Finished importing Sample Status Data
05 Mar 2023 14:13:12,499 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
05 Mar 2023 14:13:12,500 INFO : A row containing [Description: 'null', Color: '800000', Name: 'Reagent Change'] values already exists. Skipping
05 Mar 2023 14:13:12,501 INFO : A row containing [Description: 'null', Color: 'FF0000', Name: 'Instrumentation Change'] values already exists. Skipping
05 Mar 2023 14:13:12,501 INFO : A row containing [Description: 'null', Color: '0000FF', Name: 'Technician Change'] values already exists. Skipping
05 Mar 2023 14:13:12,501 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
05 Mar 2023 14:13:12,501 INFO : Importing files metadata.
05 Mar 2023 14:13:12,501 DEBUG: [/Panorama Public/2023/Princeton University Cristea Lab - VME MCS PRM] Reading files metadata from /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Princeton University Cristea Lab - VME MCS PRM_8e7766ef-9dcc-103b-b327-fea6ddf5f3bc/_temp__2023-03-05_13-49-15/export
05 Mar 2023 14:13:12,502 INFO :
05 Mar 2023 14:13:12,502 INFO : Experiment import completed successfully.
05 Mar 2023 14:13:12,502 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
05 Mar 2023 14:31:35,850 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
05 Mar 2023 14:31:35,850 INFO :
05 Mar 2023 14:31:35,850 INFO : Checking for library folders.
05 Mar 2023 14:31:35,851 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
05 Mar 2023 14:31:37,000 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
05 Mar 2023 14:31:37,000 INFO :
05 Mar 2023 14:31:37,000 INFO : Finishing up experiment copy.
05 Mar 2023 14:31:37,004 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
05 Mar 2023 14:31:37,005 INFO : Setting version on new experiment to 2
05 Mar 2023 14:31:37,005 INFO : Copying ProteomeXchange ID from the previous copy of the data.
05 Mar 2023 14:31:37,005 INFO : Copying DOI from the previous copy of the data.
05 Mar 2023 14:31:37,006 INFO : Updating access URL to point to the new copy of the data.
05 Mar 2023 14:31:37,010 INFO : Removing copy permissions given to Panorama Public
05 Mar 2023 14:31:37,026 INFO : Adding read permissions to all users that are folder admins in the source folder.
05 Mar 2023 14:31:37,027 INFO : Adding read permissions to all users that had read access to previous copy.
05 Mar 2023 14:31:37,037 INFO : Updating the 'Raw Data' tab configuration
05 Mar 2023 14:31:37,040 INFO : Updating dataFileUrls for run 202203_BS_VMEsubmission_MCS-PRM_REPS_2022-11-29_12-16-49.sky.zip; targetedms run ID 154453
05 Mar 2023 14:31:37,042 INFO : Updating dataFileUrl...
05 Mar 2023 14:31:37,042 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Princeton%20University%20Cristea%20Lab%20-%20VME%20MCS%20PRM_8e7766ef-9dcc-103b-b327-fea6ddf5f3bc/_temp__2023-03-05_13-49-15/export/xar/experiments_and_runs.xar.exploded/Run146696/202203_BS_VMEsubmission_MCS-PRM_REPS_2022-11-29_12-16-49.sky.zip
05 Mar 2023 14:31:37,042 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/Princeton%20University%20Cristea%20Lab%20-%20VME%20MCS%20PRM/@files/202203_BS_VMEsubmission_MCS-PRM_REPS_2022-11-29_12-16-49.sky.zip
05 Mar 2023 14:31:37,046 INFO : Updating dataFileUrl...
05 Mar 2023 14:31:37,046 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Princeton%20University%20Cristea%20Lab%20-%20VME%20MCS%20PRM_8e7766ef-9dcc-103b-b327-fea6ddf5f3bc/_temp__2023-03-05_13-49-15/export/xar/experiments_and_runs.xar.exploded/Run146696/202203_BS_VMEsubmission_MCS-PRM_REPS_2022-11-29_12-16-49/202203_BS_VMEsubmission_MCS-PRM_REPS.skyd
05 Mar 2023 14:31:37,046 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/Princeton%20University%20Cristea%20Lab%20-%20VME%20MCS%20PRM/@files/202203_BS_VMEsubmission_MCS-PRM_REPS_2022-11-29_12-16-49/202203_BS_VMEsubmission_MCS-PRM_REPS.skyd
05 Mar 2023 14:31:37,048 INFO : Updating dataFileUrls for run HCMV_PRM_Assay_BS_20230217_Panorama_v2_2023-02-28_15-21-15.sky.zip; targetedms run ID 154454
05 Mar 2023 14:31:37,050 INFO : Updating dataFileUrl...
05 Mar 2023 14:31:37,051 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Princeton%20University%20Cristea%20Lab%20-%20VME%20MCS%20PRM_8e7766ef-9dcc-103b-b327-fea6ddf5f3bc/_temp__2023-03-05_13-49-15/export/xar/experiments_and_runs.xar.exploded/Run151989/HCMV_PRM_Assay_BS_20230217_Panorama_v2_2023-02-28_15-21-15/HCMV_PRM_Assay_BS_20230217_Panorama_v2.skyd
05 Mar 2023 14:31:37,051 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/Princeton%20University%20Cristea%20Lab%20-%20VME%20MCS%20PRM/@files/HCMV_PRM_Assay_BS_20230217_Panorama_v2_2023-02-28_15-21-15/HCMV_PRM_Assay_BS_20230217_Panorama_v2.skyd
05 Mar 2023 14:31:37,053 INFO : Updating dataFileUrl...
05 Mar 2023 14:31:37,053 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Princeton%20University%20Cristea%20Lab%20-%20VME%20MCS%20PRM_8e7766ef-9dcc-103b-b327-fea6ddf5f3bc/_temp__2023-03-05_13-49-15/export/xar/experiments_and_runs.xar.exploded/Run151989/HCMV_PRM_Assay_BS_20230217_Panorama_v2_2023-02-28_15-21-15.sky.zip
05 Mar 2023 14:31:37,053 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/Princeton%20University%20Cristea%20Lab%20-%20VME%20MCS%20PRM/@files/HCMV_PRM_Assay_BS_20230217_Panorama_v2_2023-02-28_15-21-15.sky.zip
05 Mar 2023 14:31:37,059 INFO : Hiding the Data Pipeline tab.
05 Mar 2023 14:31:37,063 INFO : Creating a new versioned URL for the previous copy of the data: vmemcsprm_v1
05 Mar 2023 14:31:37,067 INFO : Setting the short access URL on the previous copy to vmemcsprm_v1
05 Mar 2023 14:31:37,067 INFO : Removing DOI from the previous copy
05 Mar 2023 14:31:37,069 INFO : Updating Submission. Setting copiedExperimentId to 1585
05 Mar 2023 14:31:37,211 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'