16 Nov 2023 13:25:05,511 INFO : Copying experiment "PRM quantification of interferon-induced proteins upon Type I IFN-beta, Type II IFN-gamma, and LPS stimulation of differentiated THP-1 cells" from folder /Princeton University - Cristea Lab/THP1 IFN ISG PRM to /Panorama Public/2023/Princeton University Cristea Lab - THP1 IFN ISG PRM
16 Nov 2023 13:25:05,511 INFO : =======================================
16 Nov 2023 13:25:05,530 DEBUG: Resetting Job ID: 17364daf-66f4-103c-bc68-fea6ddf5ace0
16 Nov 2023 13:25:46,903 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
16 Nov 2023 13:25:46,904 INFO : 
16 Nov 2023 13:25:46,904 INFO : Exporting experiment.
16 Nov 2023 13:26:03,695 INFO : Exporting files metadata.
16 Nov 2023 13:26:03,695 DEBUG: [/Princeton University - Cristea Lab/THP1 IFN ISG PRM]  Writing files metadata to /data/labkey/files/Panorama Public/2023/Princeton University Cristea Lab - THP1 IFN ISG PRM/@files/export
16 Nov 2023 13:26:03,698 INFO : 
16 Nov 2023 13:26:03,698 INFO : Experiment export completed successfully.
16 Nov 2023 13:26:03,698 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
16 Nov 2023 13:26:03,721 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
16 Nov 2023 13:26:03,721 INFO : 
16 Nov 2023 13:26:03,721 INFO : Importing experiment.
16 Nov 2023 13:26:03,724 DEBUG: [/Panorama Public/2023/Princeton University Cristea Lab - THP1 IFN ISG PRM] Importing folder properties from: /data/labkey/files/Panorama Public/2023/Princeton University Cristea Lab - THP1 IFN ISG PRM/@files/export
16 Nov 2023 13:26:03,725 INFO : Loading folder properties (folder type, settings and active modules)
16 Nov 2023 13:26:03,726 DEBUG: [/Panorama Public/2023/Princeton University Cristea Lab - THP1 IFN ISG PRM] Folder type: Targeted MS
16 Nov 2023 13:26:03,726 DEBUG: [/Panorama Public/2023/Princeton University Cristea Lab - THP1 IFN ISG PRM] Active modules: Wiki, Core, PanoramaPublic, Experiment, Issues, FileContent, Assay, API, TargetedMS, MS2, Query, Pipeline, Announcements, Search
16 Nov 2023 13:26:03,807 INFO : Done importing folder properties (folder type, settings and active modules)
16 Nov 2023 13:26:03,808 INFO : Loading container specific module properties
16 Nov 2023 13:26:03,812 INFO : Done importing container specific module properties
16 Nov 2023 13:26:03,813 INFO : Loading etl definitions
16 Nov 2023 13:26:03,814 INFO : Loading wikis
16 Nov 2023 13:26:05,057 INFO : 1 wiki imported
16 Nov 2023 13:26:05,057 INFO : Done importing wikis
16 Nov 2023 13:26:05,523 INFO : Starting Data Class Importer
16 Nov 2023 13:26:05,524 INFO : No types XAR file to process.
16 Nov 2023 13:26:05,524 INFO : Finished Data Class Importer
16 Nov 2023 13:26:05,545 INFO : Starting to copy files
16 Nov 2023 13:26:05,545 INFO : Copied 0 files
16 Nov 2023 13:26:05,545 INFO : Ensuring exp.data rows exist for imported files
16 Nov 2023 13:26:05,606 INFO : Starting Sample Type Importer
16 Nov 2023 13:26:05,606 INFO : No types XAR file to process.
16 Nov 2023 13:26:05,606 INFO : Finished Sample Type Importer
16 Nov 2023 13:26:05,607 INFO : Loading xar
16 Nov 2023 13:26:09,926 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-12326:TargetedMS.ImportSkyZip'
16 Nov 2023 13:26:09,928 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-12326:TargetedMS.ImportSkyZip.Core'
16 Nov 2023 13:26:09,930 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-12326:TargetedMS.ImportSkyZip.Output'
16 Nov 2023 13:26:09,930 DEBUG: Protocol import complete
16 Nov 2023 13:26:09,932 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-12326:PRM+quantification+of+interferon-induced+proteins+upon+Type+I+IFN-beta%2C+Type+II+IFN-gamma%2C+and+LPS+stimulation+of+differentiated+THP-1+cells'
16 Nov 2023 13:26:09,932 DEBUG: Experiment/Run group import complete
16 Nov 2023 13:26:09,940 DEBUG: Protocol action set import complete
16 Nov 2023 13:26:09,949 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-12326:TargetedMS.ImportSkyZip'
16 Nov 2023 13:26:09,955 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-12326:ffa456bf-6550-103c-bc68-fea6ddf5ace0'
16 Nov 2023 13:26:09,959 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-12326:ffa453c4-6550-103c-bc68-fea6ddf5ace0'
16 Nov 2023 13:26:09,959 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-12326:TargetedMS.ImportSkyZip.Core'
16 Nov 2023 13:26:09,961 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-12326:TargetedMS.ImportSkyZip.Output'
16 Nov 2023 13:26:09,962 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-12326:ffa45acf-6550-103c-bc68-fea6ddf5ace0'
16 Nov 2023 13:26:09,963 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2023/Princeton%20University%20Cristea%20Lab%20-%20THP1%20IFN%20ISG%20PRM/@files/export/xar/experiments_and_runs.xar.exploded/Run175780/THP1_IFN_PRM_Skyline_2023-11-14_14-22-42/THP1_IFN_PRM_Skyline.skyd into the system
16 Nov 2023 13:26:09,964 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2023/Princeton%20University%20Cristea%20Lab%20-%20THP1%20IFN%20ISG%20PRM/@files/export/xar/experiments_and_runs.xar.exploded/Run175780/THP1_IFN_PRM_Skyline_2023-11-14_14-22-42/THP1_IFN_PRM_Skyline.skyd into the system
16 Nov 2023 13:26:09,964 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2023/Princeton%20University%20Cristea%20Lab%20-%20THP1%20IFN%20ISG%20PRM/@files/export/xar/experiments_and_runs.xar.exploded/Run175780/THP1_IFN_PRM_Skyline_2023-11-14_14-22-42.sky.zip into the system
16 Nov 2023 13:26:09,965 INFO : Starting import from THP1_IFN_PRM_Skyline_2023-11-14_14-22-42.sky.zip
16 Nov 2023 13:26:09,968 INFO : Starting to import Skyline document from THP1_IFN_PRM_Skyline_2023-11-14_14-22-42.sky.zip
16 Nov 2023 13:26:10,195 INFO : Expanding UniProtHuman_2020.protdb
16 Nov 2023 13:26:13,546 INFO : Expanding THP1_IFN_PRM_Skyline_v2.blib
16 Nov 2023 13:26:16,845 INFO : Expanding THP1_IFN_PRM_Skyline.skyd
16 Nov 2023 13:26:17,266 INFO : Expanding THP1_IFN_PRM_Skyline.sky.view
16 Nov 2023 13:26:17,266 INFO : Expanding THP1_IFN_PRM_Skyline.sky
16 Nov 2023 13:26:17,282 INFO : Expanding THP1_IFN_PRM_Skyline.skyl
16 Nov 2023 13:26:17,304 INFO : 10% Done
16 Nov 2023 13:26:17,926 DEBUG: Starting to load chromatogram headers
16 Nov 2023 13:26:17,931 DEBUG: Done loading chromatogram headers
16 Nov 2023 13:26:18,091 INFO : Inserting Q5VYY1|ANKRD22
16 Nov 2023 13:26:18,116 INFO : 13% Done
16 Nov 2023 13:26:18,128 DEBUG: Total peptides inserted: 2
16 Nov 2023 13:26:18,128 INFO : Inserting Q5R3K3|CALHM6
16 Nov 2023 13:26:18,156 DEBUG: Total peptides inserted: 2
16 Nov 2023 13:26:18,156 INFO : Inserting P29466|CASP1
16 Nov 2023 13:26:18,162 INFO : 14% Done
16 Nov 2023 13:26:18,186 INFO : 15% Done
16 Nov 2023 13:26:18,214 DEBUG: Total peptides inserted: 3
16 Nov 2023 13:26:18,214 INFO : Inserting P13501|CCL5
16 Nov 2023 13:26:18,219 INFO : 16% Done
16 Nov 2023 13:26:18,242 DEBUG: Total peptides inserted: 2
16 Nov 2023 13:26:18,243 INFO : Inserting sp|P28907|CD38_HUMAN
16 Nov 2023 13:26:18,263 INFO : 17% Done
16 Nov 2023 13:26:18,276 DEBUG: Total peptides inserted: 2
16 Nov 2023 13:26:18,276 INFO : Inserting Q8N884|CGAS
16 Nov 2023 13:26:18,296 INFO : 18% Done
16 Nov 2023 13:26:18,326 DEBUG: Total peptides inserted: 3
16 Nov 2023 13:26:18,327 INFO : 19% Done
16 Nov 2023 13:26:18,327 INFO : Inserting P09543|CNP
16 Nov 2023 13:26:18,349 INFO : 20% Done
16 Nov 2023 13:26:18,377 DEBUG: Total peptides inserted: 3
16 Nov 2023 13:26:18,377 INFO : Inserting O95786|DDX58
16 Nov 2023 13:26:18,395 INFO : 21% Done
16 Nov 2023 13:26:18,412 INFO : 22% Done
16 Nov 2023 13:26:18,426 DEBUG: Total peptides inserted: 3
16 Nov 2023 13:26:18,426 INFO : Inserting Q96C10|DHX58
16 Nov 2023 13:26:18,461 DEBUG: Total peptides inserted: 2
16 Nov 2023 13:26:18,463 INFO : 23% Done
16 Nov 2023 13:26:18,463 INFO : Inserting P01903|HLA-DRA
16 Nov 2023 13:26:18,488 DEBUG: Total peptides inserted: 2
16 Nov 2023 13:26:18,488 INFO : Inserting P01911|HLA-DRB1
16 Nov 2023 13:26:18,493 INFO : 24% Done
16 Nov 2023 13:26:18,523 INFO : 25% Done
16 Nov 2023 13:26:18,536 DEBUG: Total peptides inserted: 3
16 Nov 2023 13:26:18,536 INFO : Inserting Q30154|HLA-DRB5
16 Nov 2023 13:26:18,568 DEBUG: Total peptides inserted: 2
16 Nov 2023 13:26:18,568 INFO : Inserting sp|Q8TDB6|DTX3L_HUMAN
16 Nov 2023 13:26:18,577 INFO : 26% Done
16 Nov 2023 13:26:18,618 INFO : 27% Done
16 Nov 2023 13:26:18,629 DEBUG: Total peptides inserted: 3
16 Nov 2023 13:26:18,629 INFO : Inserting P19525|EIF2AK2
16 Nov 2023 13:26:18,648 INFO : 28% Done
16 Nov 2023 13:26:18,669 DEBUG: Total peptides inserted: 3
16 Nov 2023 13:26:18,669 INFO : Inserting sp|P32455|GBP1_HUMAN
16 Nov 2023 13:26:18,688 INFO : 29% Done
16 Nov 2023 13:26:18,699 DEBUG: Total peptides inserted: 2
16 Nov 2023 13:26:18,699 INFO : Inserting P32456|GBP2
16 Nov 2023 13:26:18,718 INFO : 30% Done
16 Nov 2023 13:26:18,729 DEBUG: Total peptides inserted: 2
16 Nov 2023 13:26:18,729 INFO : Inserting Q96PP9|GBP4
16 Nov 2023 13:26:18,748 INFO : 31% Done
16 Nov 2023 13:26:18,758 DEBUG: Total peptides inserted: 2
16 Nov 2023 13:26:18,758 INFO : Inserting Q96PP8|GBP5
16 Nov 2023 13:26:18,770 INFO : 32% Done
16 Nov 2023 13:26:18,778 DEBUG: Total peptides inserted: 2
16 Nov 2023 13:26:18,778 INFO : Inserting P30793|GCH1
16 Nov 2023 13:26:18,802 DEBUG: Total peptides inserted: 2
16 Nov 2023 13:26:18,802 INFO : Inserting Q9UII4|HERC5
16 Nov 2023 13:26:18,806 INFO : 33% Done
16 Nov 2023 13:26:18,824 DEBUG: Total peptides inserted: 2
16 Nov 2023 13:26:18,824 INFO : Inserting P04233|CD74
16 Nov 2023 13:26:18,829 INFO : 34% Done
16 Nov 2023 13:26:18,851 DEBUG: Total peptides inserted: 2
16 Nov 2023 13:26:18,851 INFO : Inserting P14902|IDO1
16 Nov 2023 13:26:18,856 INFO : 35% Done
16 Nov 2023 13:26:18,882 INFO : 36% Done
16 Nov 2023 13:26:18,894 DEBUG: Total peptides inserted: 3
16 Nov 2023 13:26:18,894 INFO : Inserting Q16666|IFI16
16 Nov 2023 13:26:18,924 INFO : 37% Done
16 Nov 2023 13:26:18,936 DEBUG: Total peptides inserted: 3
16 Nov 2023 13:26:18,936 INFO : Inserting Q53G44|IFI44L
16 Nov 2023 13:26:18,950 INFO : 38% Done
16 Nov 2023 13:26:18,961 DEBUG: Total peptides inserted: 2
16 Nov 2023 13:26:18,961 INFO : Inserting Q8TCB0|IFI44
16 Nov 2023 13:26:18,979 INFO : 39% Done
16 Nov 2023 13:26:19,007 DEBUG: Total peptides inserted: 3
16 Nov 2023 13:26:19,007 INFO : Inserting Q9BYX4|IFIH1
16 Nov 2023 13:26:19,012 INFO : 40% Done
16 Nov 2023 13:26:19,036 DEBUG: Total peptides inserted: 2
16 Nov 2023 13:26:19,036 INFO : Inserting P09914|IFIT1
16 Nov 2023 13:26:19,041 INFO : 41% Done
16 Nov 2023 13:26:19,070 INFO : 42% Done
16 Nov 2023 13:26:19,083 DEBUG: Total peptides inserted: 3
16 Nov 2023 13:26:19,083 INFO : Inserting P09913|IFIT2
16 Nov 2023 13:26:19,100 INFO : 43% Done
16 Nov 2023 13:26:19,120 DEBUG: Total peptides inserted: 3
16 Nov 2023 13:26:19,120 INFO : Inserting O14879|IFIT3
16 Nov 2023 13:26:19,125 INFO : 44% Done
16 Nov 2023 13:26:19,153 DEBUG: Total peptides inserted: 2
16 Nov 2023 13:26:19,153 INFO : Inserting Q13325|IFIT5
16 Nov 2023 13:26:19,168 INFO : 45% Done
16 Nov 2023 13:26:19,210 INFO : 46% Done
16 Nov 2023 13:26:19,225 DEBUG: Total peptides inserted: 3
16 Nov 2023 13:26:19,225 INFO : Inserting P01584|IL1B
16 Nov 2023 13:26:19,230 INFO : 47% Done
16 Nov 2023 13:26:19,262 INFO : 48% Done
16 Nov 2023 13:26:19,275 DEBUG: Total peptides inserted: 3
16 Nov 2023 13:26:19,275 INFO : Inserting P80217|IFI35
16 Nov 2023 13:26:19,293 INFO : 49% Done
16 Nov 2023 13:26:19,308 DEBUG: Total peptides inserted: 2
16 Nov 2023 13:26:19,309 INFO : Inserting Q00978|IRF9
16 Nov 2023 13:26:19,323 INFO : 50% Done
16 Nov 2023 13:26:19,334 DEBUG: Total peptides inserted: 2
16 Nov 2023 13:26:19,334 INFO : Inserting P05161|ISG15
16 Nov 2023 13:26:19,354 INFO : 51% Done
16 Nov 2023 13:26:19,400 DEBUG: Total peptides inserted: 3
16 Nov 2023 13:26:19,400 INFO : Inserting Q96AZ6|ISG20
16 Nov 2023 13:26:19,406 INFO : 52% Done
16 Nov 2023 13:26:19,437 INFO : 53% Done
16 Nov 2023 13:26:19,450 DEBUG: Total peptides inserted: 3
16 Nov 2023 13:26:19,450 INFO : Inserting P05412|JUN
16 Nov 2023 13:26:19,472 INFO : 54% Done
16 Nov 2023 13:26:19,495 DEBUG: Total peptides inserted: 2
16 Nov 2023 13:26:19,495 INFO : Inserting Q7Z434|MAVS
16 Nov 2023 13:26:19,516 INFO : 55% Done
16 Nov 2023 13:26:19,542 DEBUG: Total peptides inserted: 3
16 Nov 2023 13:26:19,542 INFO : Inserting P20591|MX1
16 Nov 2023 13:26:19,548 INFO : 56% Done
16 Nov 2023 13:26:19,566 INFO : 57% Done
16 Nov 2023 13:26:19,604 DEBUG: Total peptides inserted: 3
16 Nov 2023 13:26:19,604 INFO : Inserting P20592|MX2
16 Nov 2023 13:26:19,609 INFO : 58% Done
16 Nov 2023 13:26:19,637 INFO : 59% Done
16 Nov 2023 13:26:19,651 DEBUG: Total peptides inserted: 3
16 Nov 2023 13:26:19,651 INFO : Inserting P19838|NFKB1
16 Nov 2023 13:26:19,672 INFO : 60% Done
16 Nov 2023 13:26:19,709 DEBUG: Total peptides inserted: 3
16 Nov 2023 13:26:19,709 INFO : Inserting Q00653|NFKB2
16 Nov 2023 13:26:19,713 INFO : 61% Done
16 Nov 2023 13:26:19,739 INFO : 62% Done
16 Nov 2023 13:26:19,749 DEBUG: Total peptides inserted: 3
16 Nov 2023 13:26:19,749 INFO : Inserting O95478|NSA2
16 Nov 2023 13:26:19,776 DEBUG: Total peptides inserted: 2
16 Nov 2023 13:26:19,776 INFO : Inserting P00973|OAS1
16 Nov 2023 13:26:19,784 INFO : 63% Done
16 Nov 2023 13:26:19,809 INFO : 64% Done
16 Nov 2023 13:26:19,833 DEBUG: Total peptides inserted: 3
16 Nov 2023 13:26:19,833 INFO : Inserting P29728|OAS2
16 Nov 2023 13:26:19,839 INFO : 65% Done
16 Nov 2023 13:26:19,871 INFO : 66% Done
16 Nov 2023 13:26:19,884 DEBUG: Total peptides inserted: 3
16 Nov 2023 13:26:19,884 INFO : Inserting Q9Y6K5|OAS3
16 Nov 2023 13:26:19,904 INFO : 67% Done
16 Nov 2023 13:26:19,932 DEBUG: Total peptides inserted: 3
16 Nov 2023 13:26:19,932 INFO : Inserting Q15646|OASL
16 Nov 2023 13:26:19,937 INFO : 68% Done
16 Nov 2023 13:26:19,963 INFO : 69% Done
16 Nov 2023 13:26:19,974 DEBUG: Total peptides inserted: 3
16 Nov 2023 13:26:19,974 INFO : Inserting Q99572|P2RX7
16 Nov 2023 13:26:19,994 INFO : 70% Done
16 Nov 2023 13:26:20,016 DEBUG: Total peptides inserted: 2
16 Nov 2023 13:26:20,016 INFO : Inserting Q9H0J9|PARP12
16 Nov 2023 13:26:20,034 INFO : 71% Done
16 Nov 2023 13:26:20,047 DEBUG: Total peptides inserted: 2
16 Nov 2023 13:26:20,047 INFO : Inserting Q460N5|PARP14
16 Nov 2023 13:26:20,062 INFO : 72% Done
16 Nov 2023 13:26:20,087 DEBUG: Total peptides inserted: 3
16 Nov 2023 13:26:20,087 INFO : Inserting Q8IXQ6|PARP9
16 Nov 2023 13:26:20,092 INFO : 73% Done
16 Nov 2023 13:26:20,115 DEBUG: Total peptides inserted: 2
16 Nov 2023 13:26:20,115 INFO : Inserting P35354|PTGS2
16 Nov 2023 13:26:20,119 INFO : 74% Done
16 Nov 2023 13:26:20,139 DEBUG: Total peptides inserted: 2
16 Nov 2023 13:26:20,139 INFO : Inserting P29590|PML
16 Nov 2023 13:26:20,172 INFO : 75% Done
16 Nov 2023 13:26:20,184 DEBUG: Total peptides inserted: 3
16 Nov 2023 13:26:20,184 INFO : Inserting Q8WXG1|RSAD2
16 Nov 2023 13:26:20,199 INFO : 76% Done
16 Nov 2023 13:26:20,213 DEBUG: Total peptides inserted: 2
16 Nov 2023 13:26:20,213 INFO : Inserting sp|Q8IVG5|SAM9L_HUMAN
16 Nov 2023 13:26:20,246 INFO : 77% Done
16 Nov 2023 13:26:20,257 DEBUG: Total peptides inserted: 2
16 Nov 2023 13:26:20,257 INFO : Inserting P20132|SDS
16 Nov 2023 13:26:20,274 INFO : 78% Done
16 Nov 2023 13:26:20,302 DEBUG: Total peptides inserted: 3
16 Nov 2023 13:26:20,302 INFO : Inserting Q9HB58|SP110
16 Nov 2023 13:26:20,307 INFO : 79% Done
16 Nov 2023 13:26:20,332 INFO : 80% Done
16 Nov 2023 13:26:20,345 DEBUG: Total peptides inserted: 3
16 Nov 2023 13:26:20,345 INFO : Inserting P42229|STAT5A
16 Nov 2023 13:26:20,362 INFO : 81% Done
16 Nov 2023 13:26:20,372 DEBUG: Total peptides inserted: 2
16 Nov 2023 13:26:20,372 INFO : Inserting P42224|STAT1
16 Nov 2023 13:26:20,393 INFO : 82% Done
16 Nov 2023 13:26:20,405 DEBUG: Total peptides inserted: 2
16 Nov 2023 13:26:20,405 INFO : Inserting P52630|STAT2
16 Nov 2023 13:26:20,424 INFO : 83% Done
16 Nov 2023 13:26:20,450 DEBUG: Total peptides inserted: 3
16 Nov 2023 13:26:20,450 INFO : Inserting P40763|STAT3
16 Nov 2023 13:26:20,455 INFO : 84% Done
16 Nov 2023 13:26:20,481 DEBUG: Total peptides inserted: 2
16 Nov 2023 13:26:20,481 INFO : Inserting Q86WV6|STING1
16 Nov 2023 13:26:20,486 INFO : 85% Done
16 Nov 2023 13:26:20,522 INFO : 86% Done
16 Nov 2023 13:26:20,542 DEBUG: Total peptides inserted: 2
16 Nov 2023 13:26:20,542 INFO : Inserting Q03518|TAP1
16 Nov 2023 13:26:20,562 INFO : 87% Done
16 Nov 2023 13:26:20,590 DEBUG: Total peptides inserted: 3
16 Nov 2023 13:26:20,590 INFO : Inserting sp|Q9UHD2|TBK1_HUMAN
16 Nov 2023 13:26:20,600 INFO : 88% Done
16 Nov 2023 13:26:20,625 INFO : 89% Done
16 Nov 2023 13:26:20,647 DEBUG: Total peptides inserted: 3
16 Nov 2023 13:26:20,648 INFO : Inserting s
16 Nov 2023 13:26:20,652 INFO : 90% Done
16 Nov 2023 13:26:20,677 INFO : 91% Done
16 Nov 2023 13:26:20,694 DEBUG: Total peptides inserted: 3
16 Nov 2023 13:26:20,694 INFO : Inserting Q8IYM9|TRIM22
16 Nov 2023 13:26:20,713 INFO : 92% Done
16 Nov 2023 13:26:20,735 DEBUG: Total peptides inserted: 2
16 Nov 2023 13:26:20,735 INFO : Inserting Q14258|TRIM25
16 Nov 2023 13:26:20,753 INFO : 93% Done
16 Nov 2023 13:26:20,781 DEBUG: Total peptides inserted: 3
16 Nov 2023 13:26:20,781 INFO : Inserting Q9C035|TRIM5
16 Nov 2023 13:26:20,786 INFO : 94% Done
16 Nov 2023 13:26:20,819 DEBUG: Total peptides inserted: 2
16 Nov 2023 13:26:20,819 INFO : Inserting sp|P19971|TYPH_HUMAN
16 Nov 2023 13:26:20,826 INFO : 95% Done
16 Nov 2023 13:26:20,849 DEBUG: Total peptides inserted: 2
16 Nov 2023 13:26:20,849 INFO : Inserting O14933|UBE2L6
16 Nov 2023 13:26:20,854 INFO : 96% Done
16 Nov 2023 13:26:20,877 DEBUG: Total peptides inserted: 2
16 Nov 2023 13:26:20,877 INFO : Inserting Q9UMW8|USP18
16 Nov 2023 13:26:20,892 INFO : 97% Done
16 Nov 2023 13:26:20,912 DEBUG: Total peptides inserted: 3
16 Nov 2023 13:26:20,912 INFO : Inserting P00749|PLAU
16 Nov 2023 13:26:20,918 INFO : 98% Done
16 Nov 2023 13:26:20,943 DEBUG: Total peptides inserted: 2
16 Nov 2023 13:26:20,945 INFO : Done parsing Skyline document.
16 Nov 2023 13:26:25,548 INFO : Creating and populating temp tables for Proportion values
16 Nov 2023 13:26:25,666 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
16 Nov 2023 13:26:25,722 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
16 Nov 2023 13:26:25,760 INFO : Cleaning up temp tables
16 Nov 2023 13:26:26,058 INFO : Completed import of Skyline document from THP1_IFN_PRM_Skyline_2023-11-14_14-22-42.sky.zip
16 Nov 2023 13:26:26,062 INFO : 100% Done
16 Nov 2023 13:26:26,065 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2023/Princeton%20University%20Cristea%20Lab%20-%20THP1%20IFN%20ISG%20PRM/@files/export/xar/experiments_and_runs.xar.exploded/Run175780/THP1_IFN_PRM_Skyline_2023-11-14_14-22-42.sky.zip into the system
16 Nov 2023 13:26:26,072 INFO : Done importing xar
16 Nov 2023 13:26:26,073 INFO : Loading pages and webpart properties
16 Nov 2023 13:26:26,131 INFO : Done importing 3 page(s) with 5 webpart(s)
16 Nov 2023 13:26:26,131 INFO : Loading File Browser config
16 Nov 2023 13:26:26,131 INFO : Done importing File Browser config
16 Nov 2023 13:26:26,132 INFO : Starting Sample Status Data import
16 Nov 2023 13:26:26,133 INFO : No sample types XAR file to process.
16 Nov 2023 13:26:26,133 INFO : Finished importing Sample Status Data
16 Nov 2023 13:26:26,137 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
16 Nov 2023 13:26:26,138 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
16 Nov 2023 13:26:26,139 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
16 Nov 2023 13:26:26,139 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
16 Nov 2023 13:26:26,139 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
16 Nov 2023 13:26:26,139 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
16 Nov 2023 13:26:26,141 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
16 Nov 2023 13:26:26,146 INFO : Moving files to folder /Panorama Public/2023/Princeton University Cristea Lab - THP1 IFN ISG PRM and creating symlinks
16 Nov 2023 13:26:26,148 DEBUG: Directory created: /data/labkey/files/Panorama Public/2023/Princeton University Cristea Lab - THP1 IFN ISG PRM/@files/THP1_IFN_PRM_Skyline_2023-11-14_14-22-42
16 Nov 2023 13:26:26,149 DEBUG: Moved file /data/labkey/files/Princeton University - Cristea Lab/THP1 IFN ISG PRM/@files/THP1_IFN_PRM_Skyline_2023-11-14_14-22-42/THP1_IFN_PRM_Skyline.skyl to /data/labkey/files/Panorama Public/2023/Princeton University Cristea Lab - THP1 IFN ISG PRM/@files/THP1_IFN_PRM_Skyline_2023-11-14_14-22-42/THP1_IFN_PRM_Skyline.skyl
16 Nov 2023 13:26:26,150 DEBUG: Created symlink /data/labkey/files/Princeton University - Cristea Lab/THP1 IFN ISG PRM/@files/THP1_IFN_PRM_Skyline_2023-11-14_14-22-42/THP1_IFN_PRM_Skyline.skyl targeting /data/labkey/files/Panorama Public/2023/Princeton University Cristea Lab - THP1 IFN ISG PRM/@files/THP1_IFN_PRM_Skyline_2023-11-14_14-22-42/THP1_IFN_PRM_Skyline.skyl
16 Nov 2023 13:26:26,152 DEBUG: Moved file /data/labkey/files/Princeton University - Cristea Lab/THP1 IFN ISG PRM/@files/THP1_IFN_PRM_Skyline_2023-11-14_14-22-42/THP1_IFN_PRM_Skyline.sky.view to /data/labkey/files/Panorama Public/2023/Princeton University Cristea Lab - THP1 IFN ISG PRM/@files/THP1_IFN_PRM_Skyline_2023-11-14_14-22-42/THP1_IFN_PRM_Skyline.sky.view
16 Nov 2023 13:26:26,153 DEBUG: Created symlink /data/labkey/files/Princeton University - Cristea Lab/THP1 IFN ISG PRM/@files/THP1_IFN_PRM_Skyline_2023-11-14_14-22-42/THP1_IFN_PRM_Skyline.sky.view targeting /data/labkey/files/Panorama Public/2023/Princeton University Cristea Lab - THP1 IFN ISG PRM/@files/THP1_IFN_PRM_Skyline_2023-11-14_14-22-42/THP1_IFN_PRM_Skyline.sky.view
16 Nov 2023 13:26:26,154 DEBUG: Moved file /data/labkey/files/Princeton University - Cristea Lab/THP1 IFN ISG PRM/@files/THP1_IFN_PRM_Skyline_2023-11-14_14-22-42/THP1_IFN_PRM_Skyline_v2.blib to /data/labkey/files/Panorama Public/2023/Princeton University Cristea Lab - THP1 IFN ISG PRM/@files/THP1_IFN_PRM_Skyline_2023-11-14_14-22-42/THP1_IFN_PRM_Skyline_v2.blib
16 Nov 2023 13:26:26,155 DEBUG: Created symlink /data/labkey/files/Princeton University - Cristea Lab/THP1 IFN ISG PRM/@files/THP1_IFN_PRM_Skyline_2023-11-14_14-22-42/THP1_IFN_PRM_Skyline_v2.blib targeting /data/labkey/files/Panorama Public/2023/Princeton University Cristea Lab - THP1 IFN ISG PRM/@files/THP1_IFN_PRM_Skyline_2023-11-14_14-22-42/THP1_IFN_PRM_Skyline_v2.blib
16 Nov 2023 13:26:26,156 DEBUG: Moved file /data/labkey/files/Princeton University - Cristea Lab/THP1 IFN ISG PRM/@files/THP1_IFN_PRM_Skyline_2023-11-14_14-22-42/UniProtHuman_2020.protdb to /data/labkey/files/Panorama Public/2023/Princeton University Cristea Lab - THP1 IFN ISG PRM/@files/THP1_IFN_PRM_Skyline_2023-11-14_14-22-42/UniProtHuman_2020.protdb
16 Nov 2023 13:26:26,157 DEBUG: Created symlink /data/labkey/files/Princeton University - Cristea Lab/THP1 IFN ISG PRM/@files/THP1_IFN_PRM_Skyline_2023-11-14_14-22-42/UniProtHuman_2020.protdb targeting /data/labkey/files/Panorama Public/2023/Princeton University Cristea Lab - THP1 IFN ISG PRM/@files/THP1_IFN_PRM_Skyline_2023-11-14_14-22-42/UniProtHuman_2020.protdb
16 Nov 2023 13:26:26,159 DEBUG: Moved file /data/labkey/files/Princeton University - Cristea Lab/THP1 IFN ISG PRM/@files/THP1_IFN_PRM_Skyline_2023-11-14_14-22-42/THP1_IFN_PRM_Skyline.sky to /data/labkey/files/Panorama Public/2023/Princeton University Cristea Lab - THP1 IFN ISG PRM/@files/THP1_IFN_PRM_Skyline_2023-11-14_14-22-42/THP1_IFN_PRM_Skyline.sky
16 Nov 2023 13:26:26,160 DEBUG: Created symlink /data/labkey/files/Princeton University - Cristea Lab/THP1 IFN ISG PRM/@files/THP1_IFN_PRM_Skyline_2023-11-14_14-22-42/THP1_IFN_PRM_Skyline.sky targeting /data/labkey/files/Panorama Public/2023/Princeton University Cristea Lab - THP1 IFN ISG PRM/@files/THP1_IFN_PRM_Skyline_2023-11-14_14-22-42/THP1_IFN_PRM_Skyline.sky
16 Nov 2023 13:26:26,161 DEBUG: Moved file /data/labkey/files/Princeton University - Cristea Lab/THP1 IFN ISG PRM/@files/THP1_IFN_PRM_Skyline_2023-11-14_14-22-42/THP1_IFN_PRM_Skyline.skyd to /data/labkey/files/Panorama Public/2023/Princeton University Cristea Lab - THP1 IFN ISG PRM/@files/THP1_IFN_PRM_Skyline_2023-11-14_14-22-42/THP1_IFN_PRM_Skyline.skyd
16 Nov 2023 13:26:26,162 DEBUG: Created symlink /data/labkey/files/Princeton University - Cristea Lab/THP1 IFN ISG PRM/@files/THP1_IFN_PRM_Skyline_2023-11-14_14-22-42/THP1_IFN_PRM_Skyline.skyd targeting /data/labkey/files/Panorama Public/2023/Princeton University Cristea Lab - THP1 IFN ISG PRM/@files/THP1_IFN_PRM_Skyline_2023-11-14_14-22-42/THP1_IFN_PRM_Skyline.skyd
16 Nov 2023 13:26:26,163 DEBUG: Directory created: /data/labkey/files/Panorama Public/2023/Princeton University Cristea Lab - THP1 IFN ISG PRM/@files/RawFiles
16 Nov 2023 13:26:26,165 DEBUG: Moved file /data/labkey/files/Princeton University - Cristea Lab/THP1 IFN ISG PRM/@files/THP1_IFN_PRM_Skyline_2023-11-14_14-22-42.sky.zip to /data/labkey/files/Panorama Public/2023/Princeton University Cristea Lab - THP1 IFN ISG PRM/@files/THP1_IFN_PRM_Skyline_2023-11-14_14-22-42.sky.zip
16 Nov 2023 13:26:26,166 DEBUG: Created symlink /data/labkey/files/Princeton University - Cristea Lab/THP1 IFN ISG PRM/@files/THP1_IFN_PRM_Skyline_2023-11-14_14-22-42.sky.zip targeting /data/labkey/files/Panorama Public/2023/Princeton University Cristea Lab - THP1 IFN ISG PRM/@files/THP1_IFN_PRM_Skyline_2023-11-14_14-22-42.sky.zip
16 Nov 2023 13:26:26,166 INFO : Aligning data files urls in folder: /Panorama Public/2023/Princeton University Cristea Lab - THP1 IFN ISG PRM
16 Nov 2023 13:26:26,168 DEBUG: Setting filePathRoot on copied run: THP1_IFN_PRM_Skyline_2023-11-14_14-22-42.sky.zip to: /data/labkey/files/Panorama Public/2023/Princeton University Cristea Lab - THP1 IFN ISG PRM/@files
16 Nov 2023 13:26:26,171 DEBUG: Setting dataFileUri on copied data: THP1_IFN_PRM_Skyline_2023-11-14_14-22-42.sky.zip to: /data/labkey/files/Panorama Public/2023/Princeton University Cristea Lab - THP1 IFN ISG PRM/@files/THP1_IFN_PRM_Skyline_2023-11-14_14-22-42.sky.zip
16 Nov 2023 13:26:26,174 DEBUG: Setting dataFileUri on copied data: THP1_IFN_PRM_Skyline.skyd to: /data/labkey/files/Panorama Public/2023/Princeton University Cristea Lab - THP1 IFN ISG PRM/@files/THP1_IFN_PRM_Skyline_2023-11-14_14-22-42/THP1_IFN_PRM_Skyline.skyd
16 Nov 2023 13:26:26,174 INFO : Importing files metadata.
16 Nov 2023 13:26:26,174 DEBUG: [/Panorama Public/2023/Princeton University Cristea Lab - THP1 IFN ISG PRM]  Reading files metadata from /data/labkey/files/Panorama Public/2023/Princeton University Cristea Lab - THP1 IFN ISG PRM/@files/export
16 Nov 2023 13:26:26,175 INFO : 
16 Nov 2023 13:26:26,175 INFO : Experiment import completed successfully.
16 Nov 2023 13:26:26,175 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
16 Nov 2023 13:26:26,194 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
16 Nov 2023 13:26:26,194 INFO : 
16 Nov 2023 13:26:26,194 INFO : Checking for library folders.
16 Nov 2023 13:26:26,196 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
16 Nov 2023 13:26:26,210 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
16 Nov 2023 13:26:26,210 INFO : 
16 Nov 2023 13:26:26,210 INFO : Finishing up experiment copy.
16 Nov 2023 13:26:26,212 INFO : Updating TargetedMS experiment entry in target folder /Panorama Public/2023/Princeton University Cristea Lab - THP1 IFN ISG PRM
16 Nov 2023 13:26:26,212 INFO : Setting version on new experiment to 1
16 Nov 2023 13:26:26,215 INFO : Updating permanent link to point to the new copy of the data.
16 Nov 2023 13:26:26,220 INFO : Removing copy permissions given to Panorama Public
16 Nov 2023 13:26:26,237 INFO : Adding read permissions to all users that are folder admins in the source folder.
16 Nov 2023 13:26:26,238 INFO : Assigning ReaderRole to nat@proteinms.net
16 Nov 2023 13:26:26,238 INFO : Assigning ReaderRole to joel.federspiel@princeton.edu
16 Nov 2023 13:26:26,238 INFO : Assigning ReaderRole to mtyl@princeton.edu
16 Nov 2023 13:26:26,238 INFO : Assigning ReaderRole to josiahh@princeton.edu
16 Nov 2023 13:26:26,238 INFO : Assigning ReaderRole to daweiliu@princeton.edu
16 Nov 2023 13:26:26,238 INFO : Assigning ReaderRole to tgreco@princeton.edu
16 Nov 2023 13:26:26,239 INFO : Assigning ReaderRole to mak4@princeton.edu
16 Nov 2023 13:26:26,239 INFO : Assigning ReaderRole to icristea@princeton.edu
16 Nov 2023 13:26:26,239 INFO : Assigning ReaderRole to th12@princeton.edu
16 Nov 2023 13:26:26,239 INFO : Assigning ReaderRole to katelync@princeton.edu
16 Nov 2023 13:26:26,239 INFO : Assigning ReaderRole to corab@princeton.edu
16 Nov 2023 13:26:26,239 INFO : Assigning ReaderRole to klum@princeton.edu
16 Nov 2023 13:26:26,239 INFO : Assigning ReaderRole to jkostas@princeton.edu
16 Nov 2023 13:26:26,239 INFO : Assigning ReaderRole to tjreed@princeton.edu
16 Nov 2023 13:26:26,239 INFO : Assigning ReaderRole to jp1381@princeton.edu
16 Nov 2023 13:26:26,239 INFO : Assigning ReaderRole to jinhang.yang@princeton.edu
16 Nov 2023 13:26:26,239 INFO : Assigning ReaderRole to wah2@princeton.edu
16 Nov 2023 13:26:26,239 INFO : Assigning ReaderRole to pmetzger@princeton.edu
16 Nov 2023 13:26:26,239 INFO : Assigning ReaderRole to bokais@princeton.edu
16 Nov 2023 13:26:26,239 INFO : Assigning PanoramaPublicSubmitterRole to klum@princeton.edu
16 Nov 2023 13:26:26,239 INFO : Assigning PanoramaPublicSubmitterRole to icristea@princeton.edu
16 Nov 2023 13:26:26,251 INFO : User klum@princeton.edu is already a member of group Panorama Public Submitters
16 Nov 2023 13:26:26,251 INFO : User icristea@princeton.edu is already a member of group Panorama Public Submitters
16 Nov 2023 13:26:26,251 INFO : Updating the 'Raw Data' tab configuration
16 Nov 2023 13:26:26,252 INFO : Creating a reviewer account.
16 Nov 2023 13:26:26,447 INFO : Created reviewer with email: User panorama+reviewer224@proteinms.net
16 Nov 2023 13:26:26,462 INFO : Adding user panorama+reviewer224@proteinms.net to group Reviewers
16 Nov 2023 13:26:26,465 INFO : Hiding the Data Pipeline tab.
16 Nov 2023 13:26:26,470 INFO : Updating Submission. Setting copiedExperimentId to 1723
16 Nov 2023 13:26:28,232 INFO : Assigning a DOI.
16 Nov 2023 13:26:29,851 INFO : Assigned DOI: 10.6069/f8by-wc38
16 Nov 2023 13:26:29,878 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'