09 Mar 2023 17:54:37,921 INFO : Copying experiment "Proteogenomic analysis of chemo-refractory high grade serous ovarian cancer" from folder /Paulovich/PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels to /Panorama Public/2023/Paulovich - PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels

09 Mar 2023 17:54:37,921 INFO : =======================================

09 Mar 2023 17:54:37,937 DEBUG: Resetting Job ID: 32b2c734-a112-103b-8de3-fea6ddf5390e

09 Mar 2023 17:54:37,970 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'

09 Mar 2023 17:54:37,970 INFO : 

09 Mar 2023 17:54:37,970 INFO : Exporting experiment.

09 Mar 2023 17:55:07,836 INFO : Exporting files metadata.

09 Mar 2023 17:55:07,836 DEBUG: [/Paulovich/PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels]  Writing files metadata to /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich - PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels_32b2c725-a112-103b-8de3-fea6ddf5390e/_temp__2023-03-09_17-54-37/export

09 Mar 2023 17:55:07,855 INFO : 

09 Mar 2023 17:55:07,855 INFO : Experiment export completed successfully.

09 Mar 2023 17:55:07,855 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'

09 Mar 2023 17:55:08,041 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'

09 Mar 2023 17:55:08,041 INFO : 

09 Mar 2023 17:55:08,041 INFO : Importing experiment.

09 Mar 2023 17:55:08,043 DEBUG: [/Panorama Public/2023/Paulovich - PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels] Importing folder properties from: /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich - PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels_32b2c725-a112-103b-8de3-fea6ddf5390e/_temp__2023-03-09_17-54-37/export

09 Mar 2023 17:55:08,044 INFO : Loading folder properties (folder type, settings and active modules)

09 Mar 2023 17:55:08,044 DEBUG: [/Panorama Public/2023/Paulovich - PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels] Folder type: Targeted MS

09 Mar 2023 17:55:08,044 DEBUG: [/Panorama Public/2023/Paulovich - PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels] Active modules: Issues, API, TargetedMS, Pipeline, Assay, Experiment, MS2, Search, Query, Internal, Announcements, Wiki, FileContent, Core, PanoramaPublic

09 Mar 2023 17:55:08,192 INFO : Done importing folder properties (folder type, settings and active modules)

09 Mar 2023 17:55:08,193 INFO : Loading container specific module properties

09 Mar 2023 17:55:08,203 INFO : Done importing container specific module properties

09 Mar 2023 17:55:08,205 INFO : Loading queries

09 Mar 2023 17:55:08,225 INFO : 6 queries imported

09 Mar 2023 17:55:08,225 INFO : Done importing queries

09 Mar 2023 17:55:08,226 INFO : Loading etl definitions

09 Mar 2023 17:55:08,227 INFO : Loading wikis

09 Mar 2023 17:55:08,228 INFO : 0 wikis imported

09 Mar 2023 17:55:08,228 INFO : Done importing wikis

09 Mar 2023 17:55:08,228 INFO : Starting to copy files

09 Mar 2023 17:55:25,919 INFO : Copied 110 files

09 Mar 2023 17:55:25,919 INFO : Ensuring exp.data rows exist for imported files

09 Mar 2023 17:55:26,526 INFO : Starting Sample Type and Data Class import

09 Mar 2023 17:55:26,526 INFO : No types XAR file to process.

09 Mar 2023 17:55:26,526 INFO : Finished importing Sample Types and Data Classes

09 Mar 2023 17:55:26,527 INFO : Loading xar

09 Mar 2023 17:55:27,445 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-11244:TargetedMS.ImportSkyZip'

09 Mar 2023 17:55:27,447 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-11244:TargetedMS.ImportSkyZip.Core'

09 Mar 2023 17:55:27,448 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-11244:TargetedMS.ImportSkyZip.Output'

09 Mar 2023 17:55:27,448 DEBUG: Protocol import complete

09 Mar 2023 17:55:27,449 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-11244:Proteogenomic+analysis+of+chemo-refractory+high+grade+serous+ovarian+cancer'

09 Mar 2023 17:55:27,449 DEBUG: Experiment/Run group import complete

09 Mar 2023 17:55:27,458 DEBUG: Protocol action set import complete

09 Mar 2023 17:55:27,465 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11244:TargetedMS.ImportSkyZip'

09 Mar 2023 17:55:27,471 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11244:a8e397c2-a0c5-103b-8de3-fea6ddf5390e'

09 Mar 2023 17:55:27,474 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11244:a8e397a2-a0c5-103b-8de3-fea6ddf5390e'

09 Mar 2023 17:55:27,474 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11244:TargetedMS.ImportSkyZip.Core'

09 Mar 2023 17:55:27,476 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11244:TargetedMS.ImportSkyZip.Output'

09 Mar 2023 17:55:27,477 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11244:a8e399ed-a0c5-103b-8de3-fea6ddf5390e'

09 Mar 2023 17:55:27,482 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11244:TargetedMS.ImportSkyZip'

09 Mar 2023 17:55:27,485 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11244:f5b38a19-a0e7-103b-8de3-fea6ddf5390e'

09 Mar 2023 17:55:27,488 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11244:f5b389ed-a0e7-103b-8de3-fea6ddf5390e'

09 Mar 2023 17:55:27,488 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11244:TargetedMS.ImportSkyZip.Core'

09 Mar 2023 17:55:27,489 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11244:TargetedMS.ImportSkyZip.Output'

09 Mar 2023 17:55:27,489 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11244:f5b38ad0-a0e7-103b-8de3-fea6ddf5390e'

09 Mar 2023 17:55:27,494 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11244:TargetedMS.ImportSkyZip'

09 Mar 2023 17:55:27,497 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11244:f5b3929b-a0e7-103b-8de3-fea6ddf5390e'

09 Mar 2023 17:55:27,500 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11244:f5b3928b-a0e7-103b-8de3-fea6ddf5390e'

09 Mar 2023 17:55:27,500 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11244:TargetedMS.ImportSkyZip.Core'

09 Mar 2023 17:55:27,501 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11244:TargetedMS.ImportSkyZip.Output'

09 Mar 2023 17:55:27,501 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11244:f5b3934a-a0e7-103b-8de3-fea6ddf5390e'

09 Mar 2023 17:55:27,506 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11244:TargetedMS.ImportSkyZip'

09 Mar 2023 17:55:27,509 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11244:f5b3956d-a0e7-103b-8de3-fea6ddf5390e'

09 Mar 2023 17:55:27,512 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11244:f5b3955d-a0e7-103b-8de3-fea6ddf5390e'

09 Mar 2023 17:55:27,512 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11244:TargetedMS.ImportSkyZip.Core'

09 Mar 2023 17:55:27,513 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11244:TargetedMS.ImportSkyZip.Output'

09 Mar 2023 17:55:27,514 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11244:f5b39610-a0e7-103b-8de3-fea6ddf5390e'

09 Mar 2023 17:55:27,515 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels_32b2c725-a112-103b-8de3-fea6ddf5390e/_temp__2023-03-09_17-54-37/export/xar/experiments_and_runs.xar.exploded/Run152963/PTRC_HGSOC_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_08-43-11/PTRC_HGSOC_FFPE_Predictor_Metabolism_directMRM_6500plus.skyd into the system

09 Mar 2023 17:55:27,515 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels_32b2c725-a112-103b-8de3-fea6ddf5390e/_temp__2023-03-09_17-54-37/export/xar/experiments_and_runs.xar.exploded/Run152963/PTRC_HGSOC_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_08-43-11/PTRC_HGSOC_FFPE_Predictor_Metabolism_directMRM_6500plus.skyd into the system

09 Mar 2023 17:55:27,515 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels_32b2c725-a112-103b-8de3-fea6ddf5390e/_temp__2023-03-09_17-54-37/export/xar/experiments_and_runs.xar.exploded/Run152963/PTRC_HGSOC_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_08-43-11.sky.zip into the system

09 Mar 2023 17:55:27,516 INFO : Starting import from PTRC_HGSOC_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_08-43-11.sky.zip

09 Mar 2023 17:55:27,519 INFO : Starting to import Skyline document from PTRC_HGSOC_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_08-43-11.sky.zip

09 Mar 2023 17:55:27,527 INFO : Expanding CE_optim_Skyline_library_all_6500_10262022.optdb

09 Mar 2023 17:55:27,533 INFO : Expanding PTRC_predictor_cluster3_direct_MRM_cons.sptxt

09 Mar 2023 17:55:27,563 INFO : Expanding PTRC_HGSOC_FFPE_Predictor_Metabolism_directMRM_6500plus.skyd

09 Mar 2023 17:55:27,847 INFO : Expanding PTRC_HGSOC_FFPE_Predictor_Metabolism_directMRM_6500plus.sky.view

09 Mar 2023 17:55:27,847 INFO : Expanding PTRC_HGSOC_FFPE_Predictor_Metabolism_directMRM_6500plus.sky

09 Mar 2023 17:55:27,969 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13

09 Mar 2023 17:55:28,457 DEBUG: Starting to load chromatogram headers

09 Mar 2023 17:55:28,476 DEBUG: Done loading chromatogram headers

09 Mar 2023 17:55:28,692 INFO : Inserting sp|O00154|BACH_HUMAN

09 Mar 2023 17:55:28,719 INFO : 1% Done

09 Mar 2023 17:55:28,958 INFO : 3% Done

09 Mar 2023 17:55:29,218 DEBUG: Total peptides inserted: 2

09 Mar 2023 17:55:29,218 INFO : Inserting sp|O95831|AIFM1_HUMAN

09 Mar 2023 17:55:29,246 INFO : 4% Done

09 Mar 2023 17:55:29,586 INFO : 5% Done

09 Mar 2023 17:55:29,875 INFO : 6% Done

09 Mar 2023 17:55:30,169 INFO : 8% Done

09 Mar 2023 17:55:30,460 INFO : 9% Done

09 Mar 2023 17:55:30,713 DEBUG: Total peptides inserted: 5

09 Mar 2023 17:55:30,713 INFO : Inserting sp|Q07817|B2CL1_HUMAN

09 Mar 2023 17:55:30,734 INFO : 10% Done

09 Mar 2023 17:55:30,941 DEBUG: Total peptides inserted: 1

09 Mar 2023 17:55:30,941 INFO : Inserting sp|P00918|CAH2_HUMAN

09 Mar 2023 17:55:30,961 INFO : 11% Done

09 Mar 2023 17:55:31,189 INFO : 12% Done

09 Mar 2023 17:55:31,455 INFO : 13% Done

09 Mar 2023 17:55:31,731 INFO : 15% Done

09 Mar 2023 17:55:32,003 INFO : 16% Done

09 Mar 2023 17:55:32,213 DEBUG: Total peptides inserted: 5

09 Mar 2023 17:55:32,213 INFO : Inserting sp|P09669|COX6C_HUMAN

09 Mar 2023 17:55:32,236 INFO : 17% Done

09 Mar 2023 17:55:32,515 INFO : 18% Done

09 Mar 2023 17:55:32,760 DEBUG: Total peptides inserted: 2

09 Mar 2023 17:55:32,760 INFO : Inserting sp|P14406|CX7A2_HUMAN

09 Mar 2023 17:55:32,780 INFO : 20% Done

09 Mar 2023 17:55:33,043 INFO : 21% Done

09 Mar 2023 17:55:33,283 DEBUG: Total peptides inserted: 2

09 Mar 2023 17:55:33,283 INFO : Inserting sp|P15954|COX7C_HUMAN

09 Mar 2023 17:55:33,303 INFO : 22% Done

09 Mar 2023 17:55:33,547 DEBUG: Total peptides inserted: 1

09 Mar 2023 17:55:33,547 INFO : Inserting sp|P36551|HEM6_HUMAN

09 Mar 2023 17:55:33,567 INFO : 23% Done

09 Mar 2023 17:55:33,821 DEBUG: Total peptides inserted: 1

09 Mar 2023 17:55:33,821 INFO : Inserting sp|P00367|DHE3_HUMAN

09 Mar 2023 17:55:33,841 INFO : 25% Done

09 Mar 2023 17:55:34,365 DEBUG: Total peptides inserted: 2

09 Mar 2023 17:55:34,366 INFO : Inserting sp|P07203|GPX1_HUMAN

09 Mar 2023 17:55:34,387 INFO : 26% Done

09 Mar 2023 17:55:34,653 INFO : 27% Done

09 Mar 2023 17:55:34,871 INFO : 28% Done

09 Mar 2023 17:55:35,144 INFO : 30% Done

09 Mar 2023 17:55:35,406 INFO : 31% Done

09 Mar 2023 17:55:35,650 DEBUG: Total peptides inserted: 5

09 Mar 2023 17:55:35,650 INFO : Inserting sp|Q16836|HCDH_HUMAN

09 Mar 2023 17:55:35,667 INFO : 32% Done

09 Mar 2023 17:55:35,891 INFO : 33% Done

09 Mar 2023 17:55:36,154 INFO : 34% Done

09 Mar 2023 17:55:36,362 DEBUG: Total peptides inserted: 3

09 Mar 2023 17:55:36,362 INFO : Inserting sp|O75874|IDHC_HUMAN

09 Mar 2023 17:55:36,383 INFO : 36% Done

09 Mar 2023 17:55:36,657 INFO : 37% Done

09 Mar 2023 17:55:36,939 INFO : 38% Done

09 Mar 2023 17:55:37,197 INFO : 39% Done

09 Mar 2023 17:55:37,409 INFO : 40% Done

09 Mar 2023 17:55:37,613 DEBUG: Total peptides inserted: 5

09 Mar 2023 17:55:37,614 INFO : Inserting sp|Q96RQ9|OXLA_HUMAN

09 Mar 2023 17:55:37,631 INFO : 41% Done

09 Mar 2023 17:55:37,852 INFO : 42% Done

09 Mar 2023 17:55:38,113 INFO : 43% Done

09 Mar 2023 17:55:38,327 INFO : 44% Done

09 Mar 2023 17:55:38,525 DEBUG: Total peptides inserted: 4

09 Mar 2023 17:55:38,525 INFO : Inserting sp|P00338|LDHA_HUMAN

09 Mar 2023 17:55:38,547 INFO : 46% Done

09 Mar 2023 17:55:38,815 INFO : 47% Done

09 Mar 2023 17:55:39,093 INFO : 48% Done

09 Mar 2023 17:55:39,315 INFO : 49% Done

09 Mar 2023 17:55:39,602 INFO : 50% Done

09 Mar 2023 17:55:39,824 DEBUG: Total peptides inserted: 5

09 Mar 2023 17:55:39,824 INFO : Inserting sp|P09382|LEG1_HUMAN

09 Mar 2023 17:55:39,852 INFO : 51% Done

09 Mar 2023 17:55:40,103 INFO : 52% Done

09 Mar 2023 17:55:40,340 INFO : 54% Done

09 Mar 2023 17:55:40,619 INFO : 55% Done

09 Mar 2023 17:55:40,927 INFO : 56% Done

09 Mar 2023 17:55:41,192 DEBUG: Total peptides inserted: 5

09 Mar 2023 17:55:41,192 INFO : Inserting sp|P09960|LKHA4_HUMAN

09 Mar 2023 17:55:41,213 INFO : 57% Done

09 Mar 2023 17:55:41,444 INFO : 58% Done

09 Mar 2023 17:55:41,723 INFO : 59% Done

09 Mar 2023 17:55:41,953 INFO : 60% Done

09 Mar 2023 17:55:42,188 INFO : 62% Done

09 Mar 2023 17:55:42,438 DEBUG: Total peptides inserted: 5

09 Mar 2023 17:55:42,439 INFO : Inserting sp|Q04206|TF65_HUMAN

09 Mar 2023 17:55:42,461 INFO : 63% Done

09 Mar 2023 17:55:42,720 DEBUG: Total peptides inserted: 1

09 Mar 2023 17:55:42,720 INFO : Inserting sp|P37837|TALDO_HUMAN

09 Mar 2023 17:55:42,745 INFO : 64% Done

09 Mar 2023 17:55:43,017 INFO : 65% Done

09 Mar 2023 17:55:43,306 INFO : 67% Done

09 Mar 2023 17:55:43,591 INFO : 68% Done

09 Mar 2023 17:55:43,870 INFO : 69% Done

09 Mar 2023 17:55:44,121 DEBUG: Total peptides inserted: 5

09 Mar 2023 17:55:44,121 INFO : Inserting sp|P02786|TFR1_HUMAN

09 Mar 2023 17:55:44,139 INFO : 70% Done

09 Mar 2023 17:55:44,358 INFO : 72% Done

09 Mar 2023 17:55:44,605 DEBUG: Total peptides inserted: 2

09 Mar 2023 17:55:44,605 INFO : Inserting sp|P21980|TGM2_HUMAN

09 Mar 2023 17:55:44,626 INFO : 73% Done

09 Mar 2023 17:55:44,900 INFO : 74% Done

09 Mar 2023 17:55:45,452 INFO : 76% Done

09 Mar 2023 17:55:45,722 INFO : 77% Done

09 Mar 2023 17:55:45,964 DEBUG: Total peptides inserted: 5

09 Mar 2023 17:55:45,964 INFO : Inserting sp|P19320|VCAM1_HUMAN

09 Mar 2023 17:55:45,982 INFO : 78% Done

09 Mar 2023 17:55:46,198 DEBUG: Total peptides inserted: 1

09 Mar 2023 17:55:46,199 INFO : Inserting sp|P61981|1433G_HUMAN

09 Mar 2023 17:55:46,218 INFO : 79% Done

09 Mar 2023 17:55:46,485 INFO : 80% Done

09 Mar 2023 17:55:46,746 INFO : 82% Done

09 Mar 2023 17:55:46,989 DEBUG: Total peptides inserted: 3

09 Mar 2023 17:55:46,989 INFO : Inserting sp|P56381|ATP5E_HUMAN

09 Mar 2023 17:55:47,007 INFO : 83% Done

09 Mar 2023 17:55:47,210 DEBUG: Total peptides inserted: 1

09 Mar 2023 17:55:47,210 INFO : Inserting sp|P06576|ATPB_HUMAN

09 Mar 2023 17:55:47,229 INFO : 84% Done

09 Mar 2023 17:55:47,487 INFO : 85% Done

09 Mar 2023 17:55:47,744 INFO : 87% Done

09 Mar 2023 17:55:48,004 INFO : 88% Done

09 Mar 2023 17:55:48,262 INFO : 89% Done

09 Mar 2023 17:55:48,504 DEBUG: Total peptides inserted: 5

09 Mar 2023 17:55:48,504 INFO : Inserting sp|Q15738|NSDHL_HUMAN

09 Mar 2023 17:55:48,523 INFO : 90% Done

09 Mar 2023 17:55:48,747 INFO : 91% Done

09 Mar 2023 17:55:49,007 INFO : 92% Done

09 Mar 2023 17:55:49,113 INFO : 93% Done

09 Mar 2023 17:55:49,365 DEBUG: Total peptides inserted: 4

09 Mar 2023 17:55:49,365 INFO : Inserting sp|P36542|ATPG_HUMAN

09 Mar 2023 17:55:49,387 INFO : 94% Done

09 Mar 2023 17:55:49,655 INFO : 95% Done

09 Mar 2023 17:55:49,876 INFO : 97% Done

09 Mar 2023 17:55:50,134 INFO : 98% Done

09 Mar 2023 17:55:50,376 DEBUG: Total peptides inserted: 4

09 Mar 2023 17:55:50,377 INFO : Done parsing Skyline document.

09 Mar 2023 17:55:50,378 INFO : Creating and populating temp tables for Proportion values

09 Mar 2023 17:55:50,553 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

09 Mar 2023 17:55:51,187 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

09 Mar 2023 17:55:51,444 INFO : Cleaning up temp tables

09 Mar 2023 17:55:51,823 INFO : Completed import of Skyline document from PTRC_HGSOC_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_08-43-11.sky.zip

09 Mar 2023 17:55:51,825 INFO : 100% Done

09 Mar 2023 17:55:51,828 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels_32b2c725-a112-103b-8de3-fea6ddf5390e/_temp__2023-03-09_17-54-37/export/xar/experiments_and_runs.xar.exploded/Run152963/PTRC_HGSOC_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_08-43-11.sky.zip into the system

09 Mar 2023 17:55:51,828 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels_32b2c725-a112-103b-8de3-fea6ddf5390e/_temp__2023-03-09_17-54-37/export/xar/experiments_and_runs.xar.exploded/Run152980/PTRC_Curves_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_12-39-54/PTRC_Curves_FFPE_Predictor_Metabolism_directMRM_6500plus.skyd into the system

09 Mar 2023 17:55:51,829 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels_32b2c725-a112-103b-8de3-fea6ddf5390e/_temp__2023-03-09_17-54-37/export/xar/experiments_and_runs.xar.exploded/Run152980/PTRC_Curves_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_12-39-54/PTRC_Curves_FFPE_Predictor_Metabolism_directMRM_6500plus.skyd into the system

09 Mar 2023 17:55:51,829 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels_32b2c725-a112-103b-8de3-fea6ddf5390e/_temp__2023-03-09_17-54-37/export/xar/experiments_and_runs.xar.exploded/Run152980/PTRC_Curves_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_12-39-54.sky.zip into the system

09 Mar 2023 17:55:51,830 INFO : Starting import from PTRC_Curves_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_12-39-54.sky.zip

09 Mar 2023 17:55:51,832 INFO : Starting to import Skyline document from PTRC_Curves_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_12-39-54.sky.zip

09 Mar 2023 17:55:51,835 INFO : Expanding CE_optim_Skyline_library_all_6500_10262022.optdb

09 Mar 2023 17:55:51,841 INFO : Expanding PTRC_predictor_cluster3_direct_MRM_cons.sptxt

09 Mar 2023 17:55:51,870 INFO : Expanding PTRC_Curves_FFPE_Predictor_Metabolism_directMRM_6500plus.skyd

09 Mar 2023 17:55:51,976 INFO : Expanding PTRC_Curves_FFPE_Predictor_Metabolism_directMRM_6500plus.sky.view

09 Mar 2023 17:55:51,976 INFO : Expanding PTRC_Curves_FFPE_Predictor_Metabolism_directMRM_6500plus.sky

09 Mar 2023 17:55:52,013 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13

09 Mar 2023 17:55:52,233 DEBUG: Starting to load chromatogram headers

09 Mar 2023 17:55:52,239 DEBUG: Done loading chromatogram headers

09 Mar 2023 17:55:52,414 INFO : Inserting sp|O00154|BACH_HUMAN

09 Mar 2023 17:55:52,423 INFO : 1% Done

09 Mar 2023 17:55:52,513 INFO : 3% Done

09 Mar 2023 17:55:52,607 DEBUG: Total peptides inserted: 2

09 Mar 2023 17:55:52,607 INFO : Inserting sp|O95831|AIFM1_HUMAN

09 Mar 2023 17:55:52,617 INFO : 4% Done

09 Mar 2023 17:55:52,720 INFO : 5% Done

09 Mar 2023 17:55:52,820 INFO : 6% Done

09 Mar 2023 17:55:52,920 INFO : 7% Done

09 Mar 2023 17:55:53,020 INFO : 9% Done

09 Mar 2023 17:55:53,115 DEBUG: Total peptides inserted: 5

09 Mar 2023 17:55:53,115 INFO : Inserting sp|Q07817|B2CL1_HUMAN

09 Mar 2023 17:55:53,123 INFO : 10% Done

09 Mar 2023 17:55:53,201 DEBUG: Total peptides inserted: 1

09 Mar 2023 17:55:53,201 INFO : Inserting sp|P00918|CAH2_HUMAN

09 Mar 2023 17:55:53,210 INFO : 11% Done

09 Mar 2023 17:55:53,294 INFO : 12% Done

09 Mar 2023 17:55:53,394 INFO : 13% Done

09 Mar 2023 17:55:53,494 INFO : 14% Done

09 Mar 2023 17:55:53,594 INFO : 15% Done

09 Mar 2023 17:55:53,673 DEBUG: Total peptides inserted: 5

09 Mar 2023 17:55:53,673 INFO : Inserting sp|P09669|COX6C_HUMAN

09 Mar 2023 17:55:53,683 INFO : 17% Done

09 Mar 2023 17:55:53,784 INFO : 18% Done

09 Mar 2023 17:55:53,879 DEBUG: Total peptides inserted: 2

09 Mar 2023 17:55:53,879 INFO : Inserting sp|P14406|CX7A2_HUMAN

09 Mar 2023 17:55:53,890 INFO : 19% Done

09 Mar 2023 17:55:53,991 INFO : 21% Done

09 Mar 2023 17:55:54,085 DEBUG: Total peptides inserted: 2

09 Mar 2023 17:55:54,085 INFO : Inserting sp|P15954|COX7C_HUMAN

09 Mar 2023 17:55:54,094 INFO : 22% Done

09 Mar 2023 17:55:54,189 DEBUG: Total peptides inserted: 1

09 Mar 2023 17:55:54,189 INFO : Inserting sp|P36551|HEM6_HUMAN

09 Mar 2023 17:55:54,198 INFO : 23% Done

09 Mar 2023 17:55:54,292 DEBUG: Total peptides inserted: 1

09 Mar 2023 17:55:54,292 INFO : Inserting sp|P00367|DHE3_HUMAN

09 Mar 2023 17:55:54,302 INFO : 24% Done

09 Mar 2023 17:55:54,405 INFO : 25% Done

09 Mar 2023 17:55:54,499 DEBUG: Total peptides inserted: 2

09 Mar 2023 17:55:54,499 INFO : Inserting sp|P07203|GPX1_HUMAN

09 Mar 2023 17:55:54,508 INFO : 26% Done

09 Mar 2023 17:55:54,608 INFO : 27% Done

09 Mar 2023 17:55:54,693 INFO : 28% Done

09 Mar 2023 17:55:54,793 INFO : 29% Done

09 Mar 2023 17:55:54,893 INFO : 31% Done

09 Mar 2023 17:55:54,987 DEBUG: Total peptides inserted: 5

09 Mar 2023 17:55:54,988 INFO : Inserting sp|Q16836|HCDH_HUMAN

09 Mar 2023 17:55:54,996 INFO : 32% Done

09 Mar 2023 17:55:55,088 INFO : 33% Done

09 Mar 2023 17:55:55,190 INFO : 34% Done

09 Mar 2023 17:55:55,268 DEBUG: Total peptides inserted: 3

09 Mar 2023 17:55:55,268 INFO : Inserting sp|O75874|IDHC_HUMAN

09 Mar 2023 17:55:55,278 INFO : 35% Done

09 Mar 2023 17:55:55,385 INFO : 36% Done

09 Mar 2023 17:55:55,490 INFO : 38% Done

09 Mar 2023 17:55:55,592 INFO : 39% Done

09 Mar 2023 17:55:55,681 INFO : 40% Done

09 Mar 2023 17:55:55,768 DEBUG: Total peptides inserted: 5

09 Mar 2023 17:55:55,768 INFO : Inserting sp|Q96RQ9|OXLA_HUMAN

09 Mar 2023 17:55:55,778 INFO : 41% Done

09 Mar 2023 17:55:55,873 INFO : 42% Done

09 Mar 2023 17:55:55,981 INFO : 43% Done

09 Mar 2023 17:55:56,071 INFO : 44% Done

09 Mar 2023 17:55:56,156 DEBUG: Total peptides inserted: 4

09 Mar 2023 17:55:56,156 INFO : Inserting sp|P00338|LDHA_HUMAN

09 Mar 2023 17:55:56,166 INFO : 45% Done

09 Mar 2023 17:55:56,275 INFO : 47% Done

09 Mar 2023 17:55:56,388 INFO : 48% Done

09 Mar 2023 17:55:56,487 INFO : 49% Done

09 Mar 2023 17:55:56,598 INFO : 50% Done

09 Mar 2023 17:55:56,689 DEBUG: Total peptides inserted: 5

09 Mar 2023 17:55:56,690 INFO : Inserting sp|P09382|LEG1_HUMAN

09 Mar 2023 17:55:56,704 INFO : 51% Done

09 Mar 2023 17:55:56,805 INFO : 52% Done

09 Mar 2023 17:55:56,899 INFO : 53% Done

09 Mar 2023 17:55:57,003 INFO : 55% Done

09 Mar 2023 17:55:57,109 INFO : 56% Done

09 Mar 2023 17:55:57,227 DEBUG: Total peptides inserted: 5

09 Mar 2023 17:55:57,227 INFO : Inserting sp|P09960|LKHA4_HUMAN

09 Mar 2023 17:55:57,238 INFO : 57% Done

09 Mar 2023 17:55:57,326 INFO : 58% Done

09 Mar 2023 17:55:57,430 INFO : 59% Done

09 Mar 2023 17:55:57,519 INFO : 60% Done

09 Mar 2023 17:55:57,610 INFO : 62% Done

09 Mar 2023 17:55:57,707 DEBUG: Total peptides inserted: 5

09 Mar 2023 17:55:57,707 INFO : Inserting sp|Q04206|TF65_HUMAN

09 Mar 2023 17:55:57,717 INFO : 63% Done

09 Mar 2023 17:55:57,812 DEBUG: Total peptides inserted: 1

09 Mar 2023 17:55:57,812 INFO : Inserting sp|P37837|TALDO_HUMAN

09 Mar 2023 17:55:57,824 INFO : 64% Done

09 Mar 2023 17:55:57,932 INFO : 65% Done

09 Mar 2023 17:55:58,045 INFO : 67% Done

09 Mar 2023 17:55:58,152 INFO : 68% Done

09 Mar 2023 17:55:58,265 INFO : 69% Done

09 Mar 2023 17:55:58,388 DEBUG: Total peptides inserted: 5

09 Mar 2023 17:55:58,388 INFO : Inserting sp|P02786|TFR1_HUMAN

09 Mar 2023 17:55:58,399 INFO : 70% Done

09 Mar 2023 17:55:58,493 INFO : 72% Done

09 Mar 2023 17:55:58,592 DEBUG: Total peptides inserted: 2

09 Mar 2023 17:55:58,592 INFO : Inserting sp|P21980|TGM2_HUMAN

09 Mar 2023 17:55:58,603 INFO : 73% Done

09 Mar 2023 17:55:58,711 INFO : 74% Done

09 Mar 2023 17:55:58,922 INFO : 76% Done

09 Mar 2023 17:55:59,026 INFO : 77% Done

09 Mar 2023 17:55:59,122 DEBUG: Total peptides inserted: 5

09 Mar 2023 17:55:59,122 INFO : Inserting sp|P19320|VCAM1_HUMAN

09 Mar 2023 17:55:59,133 INFO : 78% Done

09 Mar 2023 17:55:59,212 DEBUG: Total peptides inserted: 1

09 Mar 2023 17:55:59,212 INFO : Inserting sp|P61981|1433G_HUMAN

09 Mar 2023 17:55:59,222 INFO : 79% Done

09 Mar 2023 17:55:59,324 INFO : 81% Done

09 Mar 2023 17:55:59,425 INFO : 82% Done

09 Mar 2023 17:55:59,517 DEBUG: Total peptides inserted: 3

09 Mar 2023 17:55:59,517 INFO : Inserting sp|P56381|ATP5E_HUMAN

09 Mar 2023 17:55:59,529 INFO : 83% Done

09 Mar 2023 17:55:59,611 DEBUG: Total peptides inserted: 1

09 Mar 2023 17:55:59,611 INFO : Inserting sp|P06576|ATPB_HUMAN

09 Mar 2023 17:55:59,622 INFO : 84% Done

09 Mar 2023 17:55:59,724 INFO : 85% Done

09 Mar 2023 17:55:59,828 INFO : 87% Done

09 Mar 2023 17:55:59,930 INFO : 88% Done

09 Mar 2023 17:56:00,033 INFO : 89% Done

09 Mar 2023 17:56:00,129 DEBUG: Total peptides inserted: 5

09 Mar 2023 17:56:00,129 INFO : Inserting sp|Q15738|NSDHL_HUMAN

09 Mar 2023 17:56:00,141 INFO : 90% Done

09 Mar 2023 17:56:00,230 INFO : 91% Done

09 Mar 2023 17:56:00,328 INFO : 92% Done

09 Mar 2023 17:56:00,370 INFO : 93% Done

09 Mar 2023 17:56:00,462 DEBUG: Total peptides inserted: 4

09 Mar 2023 17:56:00,463 INFO : Inserting sp|P36542|ATPG_HUMAN

09 Mar 2023 17:56:00,473 INFO : 95% Done

09 Mar 2023 17:56:00,575 INFO : 96% Done

09 Mar 2023 17:56:00,663 INFO : 97% Done

09 Mar 2023 17:56:00,764 INFO : 98% Done

09 Mar 2023 17:56:00,859 DEBUG: Total peptides inserted: 4

09 Mar 2023 17:56:00,861 INFO : Done parsing Skyline document.

09 Mar 2023 17:56:00,862 INFO : Creating and populating temp tables for Proportion values

09 Mar 2023 17:56:00,959 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

09 Mar 2023 17:56:01,185 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

09 Mar 2023 17:56:01,278 INFO : Cleaning up temp tables

09 Mar 2023 17:56:01,545 INFO : Completed import of Skyline document from PTRC_Curves_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_12-39-54.sky.zip

09 Mar 2023 17:56:01,547 INFO : 100% Done

09 Mar 2023 17:56:01,550 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels_32b2c725-a112-103b-8de3-fea6ddf5390e/_temp__2023-03-09_17-54-37/export/xar/experiments_and_runs.xar.exploded/Run152980/PTRC_Curves_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_12-39-54.sky.zip into the system

09 Mar 2023 17:56:01,550 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels_32b2c725-a112-103b-8de3-fea6ddf5390e/_temp__2023-03-09_17-54-37/export/xar/experiments_and_runs.xar.exploded/Run152981/PTRC_Repeatability_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_12-40-58/PTRC_Repeatability_FFPE_Predictor_Metabolism_directMRM_6500plus.skyd into the system

09 Mar 2023 17:56:01,551 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels_32b2c725-a112-103b-8de3-fea6ddf5390e/_temp__2023-03-09_17-54-37/export/xar/experiments_and_runs.xar.exploded/Run152981/PTRC_Repeatability_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_12-40-58/PTRC_Repeatability_FFPE_Predictor_Metabolism_directMRM_6500plus.skyd into the system

09 Mar 2023 17:56:01,551 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels_32b2c725-a112-103b-8de3-fea6ddf5390e/_temp__2023-03-09_17-54-37/export/xar/experiments_and_runs.xar.exploded/Run152981/PTRC_Repeatability_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_12-40-58.sky.zip into the system

09 Mar 2023 17:56:01,552 INFO : Starting import from PTRC_Repeatability_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_12-40-58.sky.zip

09 Mar 2023 17:56:01,554 INFO : Starting to import Skyline document from PTRC_Repeatability_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_12-40-58.sky.zip

09 Mar 2023 17:56:01,557 INFO : Expanding CE_optim_Skyline_library_all_6500_10262022.optdb

09 Mar 2023 17:56:01,563 INFO : Expanding PTRC_predictor_cluster3_direct_MRM_cons.sptxt

09 Mar 2023 17:56:01,591 INFO : Expanding PTRC_Repeatability_FFPE_Predictor_Metabolism_directMRM_6500plus.skyd

09 Mar 2023 17:56:01,691 INFO : Expanding PTRC_Repeatability_FFPE_Predictor_Metabolism_directMRM_6500plus.sky.view

09 Mar 2023 17:56:01,692 INFO : Expanding PTRC_Repeatability_FFPE_Predictor_Metabolism_directMRM_6500plus.sky

09 Mar 2023 17:56:01,724 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13

09 Mar 2023 17:56:01,930 DEBUG: Starting to load chromatogram headers

09 Mar 2023 17:56:01,937 DEBUG: Done loading chromatogram headers

09 Mar 2023 17:56:02,099 INFO : Inserting sp|O00154|BACH_HUMAN

09 Mar 2023 17:56:02,107 INFO : 1% Done

09 Mar 2023 17:56:02,191 INFO : 3% Done

09 Mar 2023 17:56:02,277 DEBUG: Total peptides inserted: 2

09 Mar 2023 17:56:02,277 INFO : Inserting sp|O95831|AIFM1_HUMAN

09 Mar 2023 17:56:02,286 INFO : 4% Done

09 Mar 2023 17:56:02,379 INFO : 5% Done

09 Mar 2023 17:56:02,472 INFO : 6% Done

09 Mar 2023 17:56:02,564 INFO : 8% Done

09 Mar 2023 17:56:02,657 INFO : 9% Done

09 Mar 2023 17:56:02,743 DEBUG: Total peptides inserted: 5

09 Mar 2023 17:56:02,743 INFO : Inserting sp|Q07817|B2CL1_HUMAN

09 Mar 2023 17:56:02,751 INFO : 10% Done

09 Mar 2023 17:56:02,824 DEBUG: Total peptides inserted: 1

09 Mar 2023 17:56:02,824 INFO : Inserting sp|P00918|CAH2_HUMAN

09 Mar 2023 17:56:02,832 INFO : 11% Done

09 Mar 2023 17:56:02,910 INFO : 12% Done

09 Mar 2023 17:56:03,006 INFO : 14% Done

09 Mar 2023 17:56:03,099 INFO : 15% Done

09 Mar 2023 17:56:03,193 INFO : 16% Done

09 Mar 2023 17:56:03,267 DEBUG: Total peptides inserted: 5

09 Mar 2023 17:56:03,267 INFO : Inserting sp|P09669|COX6C_HUMAN

09 Mar 2023 17:56:03,276 INFO : 17% Done

09 Mar 2023 17:56:03,370 INFO : 18% Done

09 Mar 2023 17:56:03,460 DEBUG: Total peptides inserted: 2

09 Mar 2023 17:56:03,460 INFO : Inserting sp|P14406|CX7A2_HUMAN

09 Mar 2023 17:56:03,469 INFO : 20% Done

09 Mar 2023 17:56:03,565 INFO : 21% Done

09 Mar 2023 17:56:03,657 DEBUG: Total peptides inserted: 2

09 Mar 2023 17:56:03,657 INFO : Inserting sp|P15954|COX7C_HUMAN

09 Mar 2023 17:56:03,665 INFO : 22% Done

09 Mar 2023 17:56:03,755 DEBUG: Total peptides inserted: 1

09 Mar 2023 17:56:03,755 INFO : Inserting sp|P36551|HEM6_HUMAN

09 Mar 2023 17:56:03,765 INFO : 23% Done

09 Mar 2023 17:56:03,853 DEBUG: Total peptides inserted: 1

09 Mar 2023 17:56:03,853 INFO : Inserting sp|P00367|DHE3_HUMAN

09 Mar 2023 17:56:03,862 INFO : 25% Done

09 Mar 2023 17:56:04,053 DEBUG: Total peptides inserted: 2

09 Mar 2023 17:56:04,053 INFO : Inserting sp|P07203|GPX1_HUMAN

09 Mar 2023 17:56:04,064 INFO : 26% Done

09 Mar 2023 17:56:04,164 INFO : 27% Done

09 Mar 2023 17:56:04,249 INFO : 28% Done

09 Mar 2023 17:56:04,349 INFO : 30% Done

09 Mar 2023 17:56:04,450 INFO : 31% Done

09 Mar 2023 17:56:04,555 DEBUG: Total peptides inserted: 5

09 Mar 2023 17:56:04,556 INFO : Inserting sp|Q16836|HCDH_HUMAN

09 Mar 2023 17:56:04,566 INFO : 32% Done

09 Mar 2023 17:56:04,651 INFO : 33% Done

09 Mar 2023 17:56:04,747 INFO : 34% Done

09 Mar 2023 17:56:04,820 DEBUG: Total peptides inserted: 3

09 Mar 2023 17:56:04,821 INFO : Inserting sp|O75874|IDHC_HUMAN

09 Mar 2023 17:56:04,830 INFO : 36% Done

09 Mar 2023 17:56:04,927 INFO : 37% Done

09 Mar 2023 17:56:05,022 INFO : 38% Done

09 Mar 2023 17:56:05,116 INFO : 39% Done

09 Mar 2023 17:56:05,198 INFO : 40% Done

09 Mar 2023 17:56:05,272 DEBUG: Total peptides inserted: 5

09 Mar 2023 17:56:05,272 INFO : Inserting sp|Q96RQ9|OXLA_HUMAN

09 Mar 2023 17:56:05,282 INFO : 41% Done

09 Mar 2023 17:56:05,365 INFO : 42% Done

09 Mar 2023 17:56:05,463 INFO : 43% Done

09 Mar 2023 17:56:05,546 INFO : 44% Done

09 Mar 2023 17:56:05,619 DEBUG: Total peptides inserted: 4

09 Mar 2023 17:56:05,619 INFO : Inserting sp|P00338|LDHA_HUMAN

09 Mar 2023 17:56:05,631 INFO : 46% Done

09 Mar 2023 17:56:05,728 INFO : 47% Done

09 Mar 2023 17:56:05,825 INFO : 48% Done

09 Mar 2023 17:56:05,904 INFO : 49% Done

09 Mar 2023 17:56:05,997 INFO : 50% Done

09 Mar 2023 17:56:06,071 DEBUG: Total peptides inserted: 5

09 Mar 2023 17:56:06,071 INFO : Inserting sp|P09382|LEG1_HUMAN

09 Mar 2023 17:56:06,080 INFO : 51% Done

09 Mar 2023 17:56:06,161 INFO : 52% Done

09 Mar 2023 17:56:06,243 INFO : 54% Done

09 Mar 2023 17:56:06,339 INFO : 55% Done

09 Mar 2023 17:56:06,434 INFO : 56% Done

09 Mar 2023 17:56:06,525 DEBUG: Total peptides inserted: 5

09 Mar 2023 17:56:06,525 INFO : Inserting sp|P09960|LKHA4_HUMAN

09 Mar 2023 17:56:06,536 INFO : 57% Done

09 Mar 2023 17:56:06,623 INFO : 58% Done

09 Mar 2023 17:56:06,721 INFO : 59% Done

09 Mar 2023 17:56:06,808 INFO : 60% Done

09 Mar 2023 17:56:06,896 INFO : 62% Done

09 Mar 2023 17:56:07,004 DEBUG: Total peptides inserted: 5

09 Mar 2023 17:56:07,004 INFO : Inserting sp|Q04206|TF65_HUMAN

09 Mar 2023 17:56:07,015 INFO : 63% Done

09 Mar 2023 17:56:07,119 DEBUG: Total peptides inserted: 1

09 Mar 2023 17:56:07,119 INFO : Inserting sp|P37837|TALDO_HUMAN

09 Mar 2023 17:56:07,131 INFO : 64% Done

09 Mar 2023 17:56:07,234 INFO : 66% Done

09 Mar 2023 17:56:07,344 INFO : 67% Done

09 Mar 2023 17:56:07,449 INFO : 68% Done

09 Mar 2023 17:56:07,551 INFO : 69% Done

09 Mar 2023 17:56:07,645 DEBUG: Total peptides inserted: 5

09 Mar 2023 17:56:07,645 INFO : Inserting sp|P02786|TFR1_HUMAN

09 Mar 2023 17:56:07,655 INFO : 70% Done

09 Mar 2023 17:56:07,741 INFO : 72% Done

09 Mar 2023 17:56:07,830 DEBUG: Total peptides inserted: 2

09 Mar 2023 17:56:07,830 INFO : Inserting sp|P21980|TGM2_HUMAN

09 Mar 2023 17:56:07,844 INFO : 73% Done

09 Mar 2023 17:56:07,946 INFO : 74% Done

09 Mar 2023 17:56:08,148 INFO : 76% Done

09 Mar 2023 17:56:08,248 INFO : 77% Done

09 Mar 2023 17:56:08,339 DEBUG: Total peptides inserted: 5

09 Mar 2023 17:56:08,340 INFO : Inserting sp|P19320|VCAM1_HUMAN

09 Mar 2023 17:56:08,351 INFO : 78% Done

09 Mar 2023 17:56:08,427 DEBUG: Total peptides inserted: 1

09 Mar 2023 17:56:08,427 INFO : Inserting sp|P61981|1433G_HUMAN

09 Mar 2023 17:56:08,440 INFO : 79% Done

09 Mar 2023 17:56:08,562 INFO : 81% Done

09 Mar 2023 17:56:08,656 INFO : 82% Done

09 Mar 2023 17:56:08,744 DEBUG: Total peptides inserted: 3

09 Mar 2023 17:56:08,744 INFO : Inserting sp|P56381|ATP5E_HUMAN

09 Mar 2023 17:56:08,753 INFO : 83% Done

09 Mar 2023 17:56:08,823 DEBUG: Total peptides inserted: 1

09 Mar 2023 17:56:08,823 INFO : Inserting sp|P06576|ATPB_HUMAN

09 Mar 2023 17:56:08,832 INFO : 84% Done

09 Mar 2023 17:56:08,926 INFO : 85% Done

09 Mar 2023 17:56:09,022 INFO : 87% Done

09 Mar 2023 17:56:09,116 INFO : 88% Done

09 Mar 2023 17:56:09,212 INFO : 89% Done

09 Mar 2023 17:56:09,299 DEBUG: Total peptides inserted: 5

09 Mar 2023 17:56:09,299 INFO : Inserting sp|Q15738|NSDHL_HUMAN

09 Mar 2023 17:56:09,309 INFO : 90% Done

09 Mar 2023 17:56:09,389 INFO : 91% Done

09 Mar 2023 17:56:09,480 INFO : 92% Done

09 Mar 2023 17:56:09,519 INFO : 93% Done

09 Mar 2023 17:56:09,605 DEBUG: Total peptides inserted: 4

09 Mar 2023 17:56:09,605 INFO : Inserting sp|P36542|ATPG_HUMAN

09 Mar 2023 17:56:09,615 INFO : 94% Done

09 Mar 2023 17:56:09,709 INFO : 96% Done

09 Mar 2023 17:56:09,789 INFO : 97% Done

09 Mar 2023 17:56:09,883 INFO : 98% Done

09 Mar 2023 17:56:09,970 DEBUG: Total peptides inserted: 4

09 Mar 2023 17:56:09,972 INFO : Done parsing Skyline document.

09 Mar 2023 17:56:09,972 INFO : Creating and populating temp tables for Proportion values

09 Mar 2023 17:56:10,067 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

09 Mar 2023 17:56:10,289 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

09 Mar 2023 17:56:10,376 INFO : Cleaning up temp tables

09 Mar 2023 17:56:10,668 INFO : Completed import of Skyline document from PTRC_Repeatability_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_12-40-58.sky.zip

09 Mar 2023 17:56:10,670 INFO : 100% Done

09 Mar 2023 17:56:10,673 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels_32b2c725-a112-103b-8de3-fea6ddf5390e/_temp__2023-03-09_17-54-37/export/xar/experiments_and_runs.xar.exploded/Run152981/PTRC_Repeatability_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_12-40-58.sky.zip into the system

09 Mar 2023 17:56:10,673 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels_32b2c725-a112-103b-8de3-fea6ddf5390e/_temp__2023-03-09_17-54-37/export/xar/experiments_and_runs.xar.exploded/Run152982/PTRC_Stability_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_12-41-49/PTRC_Stability_FFPE_Predictor_Metabolism_directMRM_6500plus.skyd into the system

09 Mar 2023 17:56:10,674 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels_32b2c725-a112-103b-8de3-fea6ddf5390e/_temp__2023-03-09_17-54-37/export/xar/experiments_and_runs.xar.exploded/Run152982/PTRC_Stability_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_12-41-49/PTRC_Stability_FFPE_Predictor_Metabolism_directMRM_6500plus.skyd into the system

09 Mar 2023 17:56:10,674 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels_32b2c725-a112-103b-8de3-fea6ddf5390e/_temp__2023-03-09_17-54-37/export/xar/experiments_and_runs.xar.exploded/Run152982/PTRC_Stability_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_12-41-49.sky.zip into the system

09 Mar 2023 17:56:10,675 INFO : Starting import from PTRC_Stability_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_12-41-49.sky.zip

09 Mar 2023 17:56:10,677 INFO : Starting to import Skyline document from PTRC_Stability_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_12-41-49.sky.zip

09 Mar 2023 17:56:10,678 INFO : Expanding CE_optim_Skyline_library_all_6500_10262022.optdb

09 Mar 2023 17:56:10,685 INFO : Expanding PTRC_predictor_cluster3_direct_MRM_cons.sptxt

09 Mar 2023 17:56:10,715 INFO : Expanding PTRC_Stability_FFPE_Predictor_Metabolism_directMRM_6500plus.skyd

09 Mar 2023 17:56:10,759 INFO : Expanding PTRC_Stability_FFPE_Predictor_Metabolism_directMRM_6500plus.sky.view

09 Mar 2023 17:56:10,760 INFO : Expanding PTRC_Stability_FFPE_Predictor_Metabolism_directMRM_6500plus.sky

09 Mar 2023 17:56:10,775 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13

09 Mar 2023 17:56:10,899 DEBUG: Starting to load chromatogram headers

09 Mar 2023 17:56:10,901 DEBUG: Done loading chromatogram headers

09 Mar 2023 17:56:11,059 INFO : Inserting sp|O00154|BACH_HUMAN

09 Mar 2023 17:56:11,065 INFO : 1% Done

09 Mar 2023 17:56:11,112 INFO : 3% Done

09 Mar 2023 17:56:11,156 DEBUG: Total peptides inserted: 2

09 Mar 2023 17:56:11,156 INFO : Inserting sp|O95831|AIFM1_HUMAN

09 Mar 2023 17:56:11,163 INFO : 4% Done

09 Mar 2023 17:56:11,212 INFO : 5% Done

09 Mar 2023 17:56:11,259 INFO : 6% Done

09 Mar 2023 17:56:11,307 INFO : 8% Done

09 Mar 2023 17:56:11,354 INFO : 9% Done

09 Mar 2023 17:56:11,398 DEBUG: Total peptides inserted: 5

09 Mar 2023 17:56:11,398 INFO : Inserting sp|Q07817|B2CL1_HUMAN

09 Mar 2023 17:56:11,403 INFO : 10% Done

09 Mar 2023 17:56:11,441 DEBUG: Total peptides inserted: 1

09 Mar 2023 17:56:11,441 INFO : Inserting sp|P00918|CAH2_HUMAN

09 Mar 2023 17:56:11,447 INFO : 11% Done

09 Mar 2023 17:56:11,487 INFO : 12% Done

09 Mar 2023 17:56:11,535 INFO : 14% Done

09 Mar 2023 17:56:11,584 INFO : 15% Done

09 Mar 2023 17:56:11,632 INFO : 16% Done

09 Mar 2023 17:56:11,670 DEBUG: Total peptides inserted: 5

09 Mar 2023 17:56:11,670 INFO : Inserting sp|P09669|COX6C_HUMAN

09 Mar 2023 17:56:11,676 INFO : 17% Done

09 Mar 2023 17:56:11,725 INFO : 18% Done

09 Mar 2023 17:56:11,772 DEBUG: Total peptides inserted: 2

09 Mar 2023 17:56:11,772 INFO : Inserting sp|P14406|CX7A2_HUMAN

09 Mar 2023 17:56:11,778 INFO : 20% Done

09 Mar 2023 17:56:11,827 INFO : 21% Done

09 Mar 2023 17:56:11,874 DEBUG: Total peptides inserted: 2

09 Mar 2023 17:56:11,874 INFO : Inserting sp|P15954|COX7C_HUMAN

09 Mar 2023 17:56:11,880 INFO : 22% Done

09 Mar 2023 17:56:11,925 DEBUG: Total peptides inserted: 1

09 Mar 2023 17:56:11,925 INFO : Inserting sp|P36551|HEM6_HUMAN

09 Mar 2023 17:56:11,931 INFO : 23% Done

09 Mar 2023 17:56:11,977 DEBUG: Total peptides inserted: 1

09 Mar 2023 17:56:11,977 INFO : Inserting sp|P00367|DHE3_HUMAN

09 Mar 2023 17:56:11,982 INFO : 25% Done

09 Mar 2023 17:56:12,080 DEBUG: Total peptides inserted: 2

09 Mar 2023 17:56:12,080 INFO : Inserting sp|P07203|GPX1_HUMAN

09 Mar 2023 17:56:12,086 INFO : 26% Done

09 Mar 2023 17:56:12,134 INFO : 27% Done

09 Mar 2023 17:56:12,176 INFO : 29% Done

09 Mar 2023 17:56:12,225 INFO : 30% Done

09 Mar 2023 17:56:12,276 INFO : 31% Done

09 Mar 2023 17:56:12,327 DEBUG: Total peptides inserted: 5

09 Mar 2023 17:56:12,327 INFO : Inserting sp|Q16836|HCDH_HUMAN

09 Mar 2023 17:56:12,333 INFO : 32% Done

09 Mar 2023 17:56:12,377 INFO : 33% Done

09 Mar 2023 17:56:12,426 INFO : 34% Done

09 Mar 2023 17:56:12,463 DEBUG: Total peptides inserted: 3

09 Mar 2023 17:56:12,463 INFO : Inserting sp|O75874|IDHC_HUMAN

09 Mar 2023 17:56:12,470 INFO : 36% Done

09 Mar 2023 17:56:12,520 INFO : 37% Done

09 Mar 2023 17:56:12,568 INFO : 38% Done

09 Mar 2023 17:56:12,619 INFO : 39% Done

09 Mar 2023 17:56:12,661 INFO : 40% Done

09 Mar 2023 17:56:12,699 DEBUG: Total peptides inserted: 5

09 Mar 2023 17:56:12,699 INFO : Inserting sp|Q96RQ9|OXLA_HUMAN

09 Mar 2023 17:56:12,705 INFO : 41% Done

09 Mar 2023 17:56:12,747 INFO : 42% Done

09 Mar 2023 17:56:12,798 INFO : 44% Done

09 Mar 2023 17:56:12,876 DEBUG: Total peptides inserted: 4

09 Mar 2023 17:56:12,876 INFO : Inserting sp|P00338|LDHA_HUMAN

09 Mar 2023 17:56:12,883 INFO : 46% Done

09 Mar 2023 17:56:12,933 INFO : 47% Done

09 Mar 2023 17:56:12,984 INFO : 48% Done

09 Mar 2023 17:56:13,028 INFO : 49% Done

09 Mar 2023 17:56:13,078 INFO : 50% Done

09 Mar 2023 17:56:13,117 DEBUG: Total peptides inserted: 5

09 Mar 2023 17:56:13,117 INFO : Inserting sp|P09382|LEG1_HUMAN

09 Mar 2023 17:56:13,124 INFO : 51% Done

09 Mar 2023 17:56:13,165 INFO : 52% Done

09 Mar 2023 17:56:13,205 INFO : 54% Done

09 Mar 2023 17:56:13,254 INFO : 55% Done

09 Mar 2023 17:56:13,302 INFO : 56% Done

09 Mar 2023 17:56:13,348 DEBUG: Total peptides inserted: 5

09 Mar 2023 17:56:13,348 INFO : Inserting sp|P09960|LKHA4_HUMAN

09 Mar 2023 17:56:13,354 INFO : 57% Done

09 Mar 2023 17:56:13,396 INFO : 58% Done

09 Mar 2023 17:56:13,444 INFO : 59% Done

09 Mar 2023 17:56:13,486 INFO : 60% Done

09 Mar 2023 17:56:13,528 INFO : 62% Done

09 Mar 2023 17:56:13,573 DEBUG: Total peptides inserted: 5

09 Mar 2023 17:56:13,573 INFO : Inserting sp|Q04206|TF65_HUMAN

09 Mar 2023 17:56:13,579 INFO : 63% Done

09 Mar 2023 17:56:13,626 DEBUG: Total peptides inserted: 1

09 Mar 2023 17:56:13,626 INFO : Inserting sp|P37837|TALDO_HUMAN

09 Mar 2023 17:56:13,632 INFO : 64% Done

09 Mar 2023 17:56:13,681 INFO : 66% Done

09 Mar 2023 17:56:13,733 INFO : 67% Done

09 Mar 2023 17:56:13,784 INFO : 68% Done

09 Mar 2023 17:56:13,833 INFO : 69% Done

09 Mar 2023 17:56:13,877 DEBUG: Total peptides inserted: 5

09 Mar 2023 17:56:13,877 INFO : Inserting sp|P02786|TFR1_HUMAN

09 Mar 2023 17:56:13,883 INFO : 70% Done

09 Mar 2023 17:56:13,925 INFO : 72% Done

09 Mar 2023 17:56:13,970 DEBUG: Total peptides inserted: 2

09 Mar 2023 17:56:13,970 INFO : Inserting sp|P21980|TGM2_HUMAN

09 Mar 2023 17:56:13,977 INFO : 73% Done

09 Mar 2023 17:56:14,026 INFO : 74% Done

09 Mar 2023 17:56:14,122 INFO : 76% Done

09 Mar 2023 17:56:14,171 INFO : 77% Done

09 Mar 2023 17:56:14,216 DEBUG: Total peptides inserted: 5

09 Mar 2023 17:56:14,216 INFO : Inserting sp|P19320|VCAM1_HUMAN

09 Mar 2023 17:56:14,222 INFO : 78% Done

09 Mar 2023 17:56:14,262 DEBUG: Total peptides inserted: 1

09 Mar 2023 17:56:14,262 INFO : Inserting sp|P61981|1433G_HUMAN

09 Mar 2023 17:56:14,269 INFO : 79% Done

09 Mar 2023 17:56:14,317 INFO : 81% Done

09 Mar 2023 17:56:14,365 INFO : 82% Done

09 Mar 2023 17:56:14,409 DEBUG: Total peptides inserted: 3

09 Mar 2023 17:56:14,409 INFO : Inserting sp|P56381|ATP5E_HUMAN

09 Mar 2023 17:56:14,415 INFO : 83% Done

09 Mar 2023 17:56:14,452 DEBUG: Total peptides inserted: 1

09 Mar 2023 17:56:14,452 INFO : Inserting sp|P06576|ATPB_HUMAN

09 Mar 2023 17:56:14,458 INFO : 84% Done

09 Mar 2023 17:56:14,507 INFO : 85% Done

09 Mar 2023 17:56:14,559 INFO : 87% Done

09 Mar 2023 17:56:14,618 INFO : 88% Done

09 Mar 2023 17:56:14,669 INFO : 89% Done

09 Mar 2023 17:56:14,715 DEBUG: Total peptides inserted: 5

09 Mar 2023 17:56:14,716 INFO : Inserting sp|Q15738|NSDHL_HUMAN

09 Mar 2023 17:56:14,722 INFO : 90% Done

09 Mar 2023 17:56:14,764 INFO : 91% Done

09 Mar 2023 17:56:14,810 INFO : 92% Done

09 Mar 2023 17:56:14,834 INFO : 93% Done

09 Mar 2023 17:56:14,880 DEBUG: Total peptides inserted: 4

09 Mar 2023 17:56:14,880 INFO : Inserting sp|P36542|ATPG_HUMAN

09 Mar 2023 17:56:14,888 INFO : 94% Done

09 Mar 2023 17:56:14,937 INFO : 96% Done

09 Mar 2023 17:56:14,979 INFO : 97% Done

09 Mar 2023 17:56:15,028 INFO : 98% Done

09 Mar 2023 17:56:15,071 DEBUG: Total peptides inserted: 4

09 Mar 2023 17:56:15,073 INFO : Done parsing Skyline document.

09 Mar 2023 17:56:15,074 INFO : Creating and populating temp tables for Proportion values

09 Mar 2023 17:56:15,148 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

09 Mar 2023 17:56:15,239 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

09 Mar 2023 17:56:15,276 INFO : Cleaning up temp tables

09 Mar 2023 17:56:15,567 INFO : Completed import of Skyline document from PTRC_Stability_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_12-41-49.sky.zip

09 Mar 2023 17:56:15,569 INFO : 100% Done

09 Mar 2023 17:56:15,572 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels_32b2c725-a112-103b-8de3-fea6ddf5390e/_temp__2023-03-09_17-54-37/export/xar/experiments_and_runs.xar.exploded/Run152982/PTRC_Stability_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_12-41-49.sky.zip into the system

09 Mar 2023 17:56:15,587 INFO : Done importing xar

09 Mar 2023 17:56:15,588 INFO : Loading pages and webpart properties

09 Mar 2023 17:56:15,664 INFO : Done importing 4 page(s) with 7 webpart(s)

09 Mar 2023 17:56:15,664 INFO : Loading File Browser config

09 Mar 2023 17:56:15,664 INFO : Done importing File Browser config

09 Mar 2023 17:56:15,665 INFO : Starting Sample Status Data import

09 Mar 2023 17:56:15,665 INFO : No sample types XAR file to process.

09 Mar 2023 17:56:15,665 INFO : Finished importing Sample Status Data

09 Mar 2023 17:56:15,670 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType

09 Mar 2023 17:56:15,671 INFO : A row containing [Description: 'null', Color: '800000', Name: 'Reagent Change'] values already exists. Skipping

09 Mar 2023 17:56:15,672 INFO : A row containing [Description: 'null', Color: 'FF0000', Name: 'Instrumentation Change'] values already exists. Skipping

09 Mar 2023 17:56:15,672 INFO : A row containing [Description: 'null', Color: '0000FF', Name: 'Technician Change'] values already exists. Skipping

09 Mar 2023 17:56:15,672 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType

09 Mar 2023 17:56:15,672 INFO : Importing files metadata.

09 Mar 2023 17:56:15,672 DEBUG: [/Panorama Public/2023/Paulovich - PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels]  Reading files metadata from /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich - PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels_32b2c725-a112-103b-8de3-fea6ddf5390e/_temp__2023-03-09_17-54-37/export

09 Mar 2023 17:56:15,673 INFO : 

09 Mar 2023 17:56:15,673 INFO : Experiment import completed successfully.

09 Mar 2023 17:56:15,673 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'

09 Mar 2023 17:56:15,695 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'

09 Mar 2023 17:56:15,695 INFO : 

09 Mar 2023 17:56:15,695 INFO : Checking for library folders.

09 Mar 2023 17:56:15,696 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'

09 Mar 2023 17:56:15,714 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'

09 Mar 2023 17:56:15,714 INFO : 

09 Mar 2023 17:56:15,714 INFO : Finishing up experiment copy.

09 Mar 2023 17:56:15,716 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.

09 Mar 2023 17:56:15,716 INFO : Setting version on new experiment to 1

09 Mar 2023 17:56:15,716 INFO : Assigning a ProteomeXchange ID.

09 Mar 2023 17:56:15,958 INFO : Assigning a DOI.

09 Mar 2023 17:56:16,745 INFO : Assigned DOI: 10.6069/vbsn-6k93

09 Mar 2023 17:56:16,748 INFO : Updating access URL to point to the new copy of the data.

09 Mar 2023 17:56:16,752 INFO : Removing copy permissions given to Panorama Public

09 Mar 2023 17:56:16,762 INFO : Adding read permissions to all users that are folder admins in the source folder.

09 Mar 2023 17:56:16,769 INFO : Updating the 'Raw Data' tab configuration

09 Mar 2023 17:56:16,771 INFO : Updating dataFileUrls for run PTRC_HGSOC_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_08-43-11.sky.zip; targetedms run ID 154928

09 Mar 2023 17:56:16,771 INFO : Updating dataFileUrl...

09 Mar 2023 17:56:16,771 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels_32b2c725-a112-103b-8de3-fea6ddf5390e/_temp__2023-03-09_17-54-37/export/xar/experiments_and_runs.xar.exploded/Run152963/PTRC_HGSOC_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_08-43-11/PTRC_HGSOC_FFPE_Predictor_Metabolism_directMRM_6500plus.skyd

09 Mar 2023 17:56:16,771 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/Paulovich%20-%20PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels/@files/PTRC_HGSOC_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_08-43-11/PTRC_HGSOC_FFPE_Predictor_Metabolism_directMRM_6500plus.skyd

09 Mar 2023 17:56:16,773 INFO : Updating dataFileUrl...

09 Mar 2023 17:56:16,773 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels_32b2c725-a112-103b-8de3-fea6ddf5390e/_temp__2023-03-09_17-54-37/export/xar/experiments_and_runs.xar.exploded/Run152963/PTRC_HGSOC_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_08-43-11.sky.zip

09 Mar 2023 17:56:16,773 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/Paulovich%20-%20PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels/@files/PTRC_HGSOC_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_08-43-11.sky.zip

09 Mar 2023 17:56:16,775 INFO : Updating dataFileUrls for run PTRC_Curves_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_12-39-54.sky.zip; targetedms run ID 154929

09 Mar 2023 17:56:16,775 INFO : Updating dataFileUrl...

09 Mar 2023 17:56:16,775 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels_32b2c725-a112-103b-8de3-fea6ddf5390e/_temp__2023-03-09_17-54-37/export/xar/experiments_and_runs.xar.exploded/Run152980/PTRC_Curves_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_12-39-54.sky.zip

09 Mar 2023 17:56:16,775 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/Paulovich%20-%20PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels/@files/PTRC_Curves_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_12-39-54.sky.zip

09 Mar 2023 17:56:16,777 INFO : Updating dataFileUrl...

09 Mar 2023 17:56:16,777 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels_32b2c725-a112-103b-8de3-fea6ddf5390e/_temp__2023-03-09_17-54-37/export/xar/experiments_and_runs.xar.exploded/Run152980/PTRC_Curves_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_12-39-54/PTRC_Curves_FFPE_Predictor_Metabolism_directMRM_6500plus.skyd

09 Mar 2023 17:56:16,777 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/Paulovich%20-%20PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels/@files/PTRC_Curves_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_12-39-54/PTRC_Curves_FFPE_Predictor_Metabolism_directMRM_6500plus.skyd

09 Mar 2023 17:56:16,779 INFO : Updating dataFileUrls for run PTRC_Repeatability_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_12-40-58.sky.zip; targetedms run ID 154930

09 Mar 2023 17:56:16,779 INFO : Updating dataFileUrl...

09 Mar 2023 17:56:16,779 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels_32b2c725-a112-103b-8de3-fea6ddf5390e/_temp__2023-03-09_17-54-37/export/xar/experiments_and_runs.xar.exploded/Run152981/PTRC_Repeatability_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_12-40-58.sky.zip

09 Mar 2023 17:56:16,779 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/Paulovich%20-%20PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels/@files/PTRC_Repeatability_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_12-40-58.sky.zip

09 Mar 2023 17:56:16,780 INFO : Updating dataFileUrl...

09 Mar 2023 17:56:16,780 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels_32b2c725-a112-103b-8de3-fea6ddf5390e/_temp__2023-03-09_17-54-37/export/xar/experiments_and_runs.xar.exploded/Run152981/PTRC_Repeatability_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_12-40-58/PTRC_Repeatability_FFPE_Predictor_Metabolism_directMRM_6500plus.skyd

09 Mar 2023 17:56:16,780 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/Paulovich%20-%20PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels/@files/PTRC_Repeatability_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_12-40-58/PTRC_Repeatability_FFPE_Predictor_Metabolism_directMRM_6500plus.skyd

09 Mar 2023 17:56:16,782 INFO : Updating dataFileUrls for run PTRC_Stability_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_12-41-49.sky.zip; targetedms run ID 154931

09 Mar 2023 17:56:16,783 INFO : Updating dataFileUrl...

09 Mar 2023 17:56:16,783 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels_32b2c725-a112-103b-8de3-fea6ddf5390e/_temp__2023-03-09_17-54-37/export/xar/experiments_and_runs.xar.exploded/Run152982/PTRC_Stability_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_12-41-49/PTRC_Stability_FFPE_Predictor_Metabolism_directMRM_6500plus.skyd

09 Mar 2023 17:56:16,783 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/Paulovich%20-%20PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels/@files/PTRC_Stability_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_12-41-49/PTRC_Stability_FFPE_Predictor_Metabolism_directMRM_6500plus.skyd

09 Mar 2023 17:56:16,784 INFO : Updating dataFileUrl...

09 Mar 2023 17:56:16,784 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels_32b2c725-a112-103b-8de3-fea6ddf5390e/_temp__2023-03-09_17-54-37/export/xar/experiments_and_runs.xar.exploded/Run152982/PTRC_Stability_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_12-41-49.sky.zip

09 Mar 2023 17:56:16,784 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/Paulovich%20-%20PTRC_HGSOC_FFPE_direct_MRM_predictor_metabolism_panels/@files/PTRC_Stability_FFPE_Predictor_Metabolism_directMRM_6500plus_2023-03-09_12-41-49.sky.zip

09 Mar 2023 17:56:16,790 INFO : Creating a reviewer account.

09 Mar 2023 17:56:16,988 INFO : Created reviewer with email: User panorama+reviewer176@proteinms.net

09 Mar 2023 17:56:16,997 INFO : Hiding the Data Pipeline tab.

09 Mar 2023 17:56:17,001 INFO : Updating Submission. Setting copiedExperimentId to 1594

09 Mar 2023 17:56:17,081 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'