06 Feb 2023 16:06:05,662 INFO : Copying experiment "PeakDecoder enables machine learning-1 based metabolite annotation and accurate profiling in multidimensional mass spectrometry measurements" from folder /PNNL/ABF_IMS_SyntheticBio to /Panorama Public/2023/PNNL - ABF_IMS_SyntheticBio
06 Feb 2023 16:06:05,662 INFO : =======================================
06 Feb 2023 16:06:05,676 DEBUG: Resetting Job ID: ae59f4f7-88a8-103b-b327-fea6ddf5f3bc
06 Feb 2023 16:06:05,699 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
06 Feb 2023 16:06:05,699 INFO :
06 Feb 2023 16:06:05,699 INFO : Exporting experiment.
06 Feb 2023 16:06:06,644 INFO : Exporting files metadata.
06 Feb 2023 16:06:06,644 DEBUG: [/PNNL/ABF_IMS_SyntheticBio] Writing files metadata to /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/PNNL - ABF_IMS_SyntheticBio_ae59f4e8-88a8-103b-b327-fea6ddf5f3bc/_temp__2023-02-06_16-06-04/export
06 Feb 2023 16:06:06,646 INFO :
06 Feb 2023 16:06:06,646 INFO : Experiment export completed successfully.
06 Feb 2023 16:06:06,646 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
06 Feb 2023 16:06:06,665 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
06 Feb 2023 16:06:06,665 INFO :
06 Feb 2023 16:06:06,665 INFO : Importing experiment.
06 Feb 2023 16:06:06,667 DEBUG: [/Panorama Public/2023/PNNL - ABF_IMS_SyntheticBio] Importing folder properties from: /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/PNNL - ABF_IMS_SyntheticBio_ae59f4e8-88a8-103b-b327-fea6ddf5f3bc/_temp__2023-02-06_16-06-04/export
06 Feb 2023 16:06:06,668 INFO : Loading folder properties (folder type, settings and active modules)
06 Feb 2023 16:06:06,668 DEBUG: [/Panorama Public/2023/PNNL - ABF_IMS_SyntheticBio] Folder type: Targeted MS
06 Feb 2023 16:06:06,668 DEBUG: [/Panorama Public/2023/PNNL - ABF_IMS_SyntheticBio] Active modules: Internal, API, Pipeline, Wiki, MS2, TargetedMS, Core, Issues, Experiment, Assay, FileContent, PanoramaPublic, Search, Announcements, Query
06 Feb 2023 16:06:06,740 INFO : Done importing folder properties (folder type, settings and active modules)
06 Feb 2023 16:06:06,741 INFO : Loading container specific module properties
06 Feb 2023 16:06:06,750 INFO : Done importing container specific module properties
06 Feb 2023 16:06:06,752 INFO : Loading etl definitions
06 Feb 2023 16:06:06,753 INFO : Loading wikis
06 Feb 2023 16:06:06,754 INFO : 0 wikis imported
06 Feb 2023 16:06:06,754 INFO : Done importing wikis
06 Feb 2023 16:06:06,754 INFO : Starting to copy files
06 Feb 2023 16:06:06,807 INFO : Copied 5 files
06 Feb 2023 16:06:06,807 INFO : Ensuring exp.data rows exist for imported files
06 Feb 2023 16:06:06,843 INFO : Starting Sample Type and Data Class import
06 Feb 2023 16:06:06,843 INFO : No types XAR file to process.
06 Feb 2023 16:06:06,843 INFO : Finished importing Sample Types and Data Classes
06 Feb 2023 16:06:06,844 INFO : Loading xar
06 Feb 2023 16:06:06,909 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-11093:TargetedMS.ImportSkyZip'
06 Feb 2023 16:06:06,911 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-11093:TargetedMS.ImportSkyZip.Core'
06 Feb 2023 16:06:06,913 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-11093:TargetedMS.ImportSkyZip.Output'
06 Feb 2023 16:06:06,913 DEBUG: Protocol import complete
06 Feb 2023 16:06:06,915 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-11093:PeakDecoder+enables+machine+learning-1+based+metabolite+annotation+and+accurate+profiling+in+multidimensional+mass+spectrometry+measurements'
06 Feb 2023 16:06:06,915 DEBUG: Experiment/Run group import complete
06 Feb 2023 16:06:06,927 DEBUG: Protocol action set import complete
06 Feb 2023 16:06:06,936 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11093:TargetedMS.ImportSkyZip'
06 Feb 2023 16:06:06,942 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11093:4ee70e95-863b-103b-b327-fea6ddf5f3bc'
06 Feb 2023 16:06:06,946 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11093:4ee70e75-863b-103b-b327-fea6ddf5f3bc'
06 Feb 2023 16:06:06,946 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11093:TargetedMS.ImportSkyZip.Core'
06 Feb 2023 16:06:06,948 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11093:TargetedMS.ImportSkyZip.Output'
06 Feb 2023 16:06:06,949 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11093:4ee70f5d-863b-103b-b327-fea6ddf5f3bc'
06 Feb 2023 16:06:06,949 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/PNNL%20-%20ABF_IMS_SyntheticBio_ae59f4e8-88a8-103b-b327-fea6ddf5f3bc/_temp__2023-02-06_16-06-04/export/xar/experiments_and_runs.xar.exploded/Run150249/Putida_Targeted_2023-02-03_13-54-58/Putida_Targeted.skyd into the system
06 Feb 2023 16:06:06,950 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/PNNL%20-%20ABF_IMS_SyntheticBio_ae59f4e8-88a8-103b-b327-fea6ddf5f3bc/_temp__2023-02-06_16-06-04/export/xar/experiments_and_runs.xar.exploded/Run150249/Putida_Targeted_2023-02-03_13-54-58/Putida_Targeted.skyd into the system
06 Feb 2023 16:06:06,950 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/PNNL%20-%20ABF_IMS_SyntheticBio_ae59f4e8-88a8-103b-b327-fea6ddf5f3bc/_temp__2023-02-06_16-06-04/export/xar/experiments_and_runs.xar.exploded/Run150249/Putida_Targeted_2023-02-03_13-54-58.sky.zip into the system
06 Feb 2023 16:06:06,951 INFO : Starting import from Putida_Targeted_2023-02-03_13-54-58.sky.zip
06 Feb 2023 16:06:06,954 INFO : Starting to import Skyline document from Putida_Targeted_2023-02-03_13-54-58.sky.zip
06 Feb 2023 16:06:06,955 INFO : Expanding Putida_Targeted.skyd
06 Feb 2023 16:06:06,982 INFO : Expanding Putida_Targeted.sky.view
06 Feb 2023 16:06:06,983 INFO : Expanding Putida_Targeted.sky
06 Feb 2023 16:06:06,996 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13
06 Feb 2023 16:06:07,018 DEBUG: Starting to load chromatogram headers
06 Feb 2023 16:06:07,021 DEBUG: Done loading chromatogram headers
06 Feb 2023 16:06:07,190 INFO : Inserting tr|Q88N35|Q88N35_PSEPK
06 Feb 2023 16:06:07,196 INFO : 1% Done
06 Feb 2023 16:06:07,227 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:07,227 INFO : Inserting sp|Q88CY9|F16PA_PSEPK
06 Feb 2023 16:06:07,231 INFO : 2% Done
06 Feb 2023 16:06:07,255 INFO : 3% Done
06 Feb 2023 16:06:07,279 DEBUG: Total peptides inserted: 2
06 Feb 2023 16:06:07,279 INFO : Inserting tr|Q88LY5|Q88LY5_PSEPK
06 Feb 2023 16:06:07,283 INFO : 4% Done
06 Feb 2023 16:06:07,306 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:07,306 INFO : Inserting tr|Q88HB7|Q88HB7_PSEPK
06 Feb 2023 16:06:07,333 INFO : 5% Done
06 Feb 2023 16:06:07,355 DEBUG: Total peptides inserted: 2
06 Feb 2023 16:06:07,355 INFO : Inserting tr|Q88EP9|Q88EP9_PSEPK
06 Feb 2023 16:06:07,359 INFO : 6% Done
06 Feb 2023 16:06:07,381 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:07,381 INFO : Inserting sp|Q88CX4|GPMI_PSEPK
06 Feb 2023 16:06:07,385 INFO : 7% Done
06 Feb 2023 16:06:07,412 INFO : 8% Done
06 Feb 2023 16:06:07,434 DEBUG: Total peptides inserted: 2
06 Feb 2023 16:06:07,434 INFO : Inserting tr|Q88JJ7|Q88JJ7_PSEPK
06 Feb 2023 16:06:07,438 INFO : 9% Done
06 Feb 2023 16:06:07,460 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:07,460 INFO : Inserting tr|Q88MF5|Q88MF5_PSEPK
06 Feb 2023 16:06:07,486 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:07,486 INFO : Inserting tr|Q88GQ6|Q88GQ6_PSEPK
06 Feb 2023 16:06:07,489 INFO : 10% Done
06 Feb 2023 16:06:07,513 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:07,513 INFO : Inserting tr|Q88E31|Q88E31_PSEPK
06 Feb 2023 16:06:07,516 INFO : 11% Done
06 Feb 2023 16:06:07,539 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:07,539 INFO : Inserting tr|Q88JU3|Q88JU3_PSEPK
06 Feb 2023 16:06:07,543 INFO : 12% Done
06 Feb 2023 16:06:07,565 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:07,565 INFO : Inserting tr|Q88KS2|Q88KS2_PSEPK
06 Feb 2023 16:06:07,569 INFO : 13% Done
06 Feb 2023 16:06:07,591 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:07,591 INFO : Inserting tr|Q88FA7|Q88FA7_PSEPK
06 Feb 2023 16:06:07,595 INFO : 14% Done
06 Feb 2023 16:06:07,614 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:07,614 INFO : Inserting tr|Q88NF7|Q88NF7_PSEPK
06 Feb 2023 16:06:07,635 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:07,635 INFO : Inserting sp|Q88KY8|STHA_PSEPK
06 Feb 2023 16:06:07,639 INFO : 15% Done
06 Feb 2023 16:06:07,662 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:07,662 INFO : Inserting tr|Q88L53|Q88L53_PSEPK
06 Feb 2023 16:06:07,666 INFO : 16% Done
06 Feb 2023 16:06:07,692 INFO : 17% Done
06 Feb 2023 16:06:07,714 DEBUG: Total peptides inserted: 2
06 Feb 2023 16:06:07,715 INFO : Inserting sp|Q88QX8|MASZ_PSEPK
06 Feb 2023 16:06:07,718 INFO : 18% Done
06 Feb 2023 16:06:07,740 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:07,740 INFO : Inserting tr|Q88QZ5|Q88QZ5_PSEPK
06 Feb 2023 16:06:07,746 INFO : 19% Done
06 Feb 2023 16:06:07,768 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:07,768 INFO : Inserting sp|Q88MP5|DAPE_PSEPK
06 Feb 2023 16:06:07,791 INFO : 20% Done
06 Feb 2023 16:06:07,813 DEBUG: Total peptides inserted: 2
06 Feb 2023 16:06:07,813 INFO : Inserting sp|Q88M20|FUMC_PSEPK
06 Feb 2023 16:06:07,816 INFO : 21% Done
06 Feb 2023 16:06:07,834 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:07,834 INFO : Inserting tr|Q88GZ6|Q88GZ6_PSEPK
06 Feb 2023 16:06:07,857 INFO : 22% Done
06 Feb 2023 16:06:07,878 DEBUG: Total peptides inserted: 2
06 Feb 2023 16:06:07,878 INFO : Inserting tr|Q88L24|Q88L24_PSEPK
06 Feb 2023 16:06:07,882 INFO : 23% Done
06 Feb 2023 16:06:07,904 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:07,904 INFO : Inserting tr|Q88HH9|Q88HH9_PSEPK
06 Feb 2023 16:06:07,908 INFO : 24% Done
06 Feb 2023 16:06:07,947 DEBUG: Total peptides inserted: 2
06 Feb 2023 16:06:07,947 INFO : Inserting sp|Q88DW8|PANC_PSEPK
06 Feb 2023 16:06:07,951 INFO : 25% Done
06 Feb 2023 16:06:07,972 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:07,972 INFO : Inserting tr|Q88C37|Q88C37_PSEPK
06 Feb 2023 16:06:07,997 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:07,997 INFO : Inserting sp|Q88C92|PYRE_PSEPK
06 Feb 2023 16:06:08,001 INFO : 26% Done
06 Feb 2023 16:06:08,023 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:08,023 INFO : Inserting tr|Q88FB1|Q88FB1_PSEPK
06 Feb 2023 16:06:08,027 INFO : 27% Done
06 Feb 2023 16:06:08,052 INFO : 28% Done
06 Feb 2023 16:06:08,074 DEBUG: Total peptides inserted: 2
06 Feb 2023 16:06:08,074 INFO : Inserting sp|Q88R44|HIS5_PSEPK
06 Feb 2023 16:06:08,102 INFO : 29% Done
06 Feb 2023 16:06:08,124 DEBUG: Total peptides inserted: 2
06 Feb 2023 16:06:08,124 INFO : Inserting tr|Q88FA4|Q88FA4_PSEPK
06 Feb 2023 16:06:08,127 INFO : 30% Done
06 Feb 2023 16:06:08,154 INFO : 31% Done
06 Feb 2023 16:06:08,178 INFO : 32% Done
06 Feb 2023 16:06:08,200 DEBUG: Total peptides inserted: 3
06 Feb 2023 16:06:08,200 INFO : Inserting tr|Q88FB3|Q88FB3_PSEPK
06 Feb 2023 16:06:08,204 INFO : 33% Done
06 Feb 2023 16:06:08,227 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:08,227 INFO : Inserting tr|Q88FS2|Q88FS2_PSEPK
06 Feb 2023 16:06:08,250 INFO : 34% Done
06 Feb 2023 16:06:08,275 INFO : 35% Done
06 Feb 2023 16:06:08,297 DEBUG: Total peptides inserted: 3
06 Feb 2023 16:06:08,297 INFO : Inserting tr|Q88HH5|Q88HH5_PSEPK
06 Feb 2023 16:06:08,300 INFO : 36% Done
06 Feb 2023 16:06:08,325 INFO : 37% Done
06 Feb 2023 16:06:08,347 DEBUG: Total peptides inserted: 2
06 Feb 2023 16:06:08,347 INFO : Inserting sp|Q88DK3|PUR9_PSEPK
06 Feb 2023 16:06:08,351 INFO : 38% Done
06 Feb 2023 16:06:08,398 DEBUG: Total peptides inserted: 2
06 Feb 2023 16:06:08,398 INFO : Inserting tr|Q88PF3|Q88PF3_PSEPK
06 Feb 2023 16:06:08,402 INFO : 39% Done
06 Feb 2023 16:06:08,425 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:08,425 INFO : Inserting sp|Q88CV2|AROB_PSEPK
06 Feb 2023 16:06:08,428 INFO : 40% Done
06 Feb 2023 16:06:08,453 INFO : 41% Done
06 Feb 2023 16:06:08,474 INFO : 42% Done
06 Feb 2023 16:06:08,496 DEBUG: Total peptides inserted: 3
06 Feb 2023 16:06:08,496 INFO : Inserting tr|Q88MC0|Q88MC0_PSEPK
06 Feb 2023 16:06:08,521 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:08,522 INFO : 43% Done
06 Feb 2023 16:06:08,522 INFO : Inserting sp|Q88DV4|TPIS_PSEPK
06 Feb 2023 16:06:08,547 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:08,547 INFO : Inserting sp|Q88R42|HIS4_PSEPK
06 Feb 2023 16:06:08,550 INFO : 44% Done
06 Feb 2023 16:06:08,575 INFO : 45% Done
06 Feb 2023 16:06:08,598 DEBUG: Total peptides inserted: 2
06 Feb 2023 16:06:08,598 INFO : Inserting sp|Q88KX1|TAL_PSEPK
06 Feb 2023 16:06:08,601 INFO : 46% Done
06 Feb 2023 16:06:08,627 INFO : 47% Done
06 Feb 2023 16:06:08,650 DEBUG: Total peptides inserted: 2
06 Feb 2023 16:06:08,650 INFO : Inserting tr|Q88M05|Q88M05_PSEPK
06 Feb 2023 16:06:08,655 INFO : 48% Done
06 Feb 2023 16:06:08,678 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:08,678 INFO : Inserting sp|Q88CQ2|ILVD_PSEPK
06 Feb 2023 16:06:08,682 INFO : 49% Done
06 Feb 2023 16:06:08,728 DEBUG: Total peptides inserted: 2
06 Feb 2023 16:06:08,728 INFO : Inserting tr|Q88P42|Q88P42_PSEPK
06 Feb 2023 16:06:08,732 INFO : 50% Done
06 Feb 2023 16:06:08,758 INFO : 51% Done
06 Feb 2023 16:06:08,780 DEBUG: Total peptides inserted: 2
06 Feb 2023 16:06:08,780 INFO : Inserting tr|Q88P43|Q88P43_PSEPK
06 Feb 2023 16:06:08,785 INFO : 52% Done
06 Feb 2023 16:06:08,811 INFO : 53% Done
06 Feb 2023 16:06:08,838 INFO : 54% Done
06 Feb 2023 16:06:08,860 DEBUG: Total peptides inserted: 3
06 Feb 2023 16:06:08,860 INFO : Inserting sp|Q88M04|KCY_PSEPK
06 Feb 2023 16:06:08,885 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:08,885 INFO : Inserting sp|Q88IS4|MQO3_PSEPK
06 Feb 2023 16:06:08,889 INFO : 55% Done
06 Feb 2023 16:06:08,911 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:08,911 INFO : Inserting tr|Q88FB0|Q88FB0_PSEPK
06 Feb 2023 16:06:08,915 INFO : 56% Done
06 Feb 2023 16:06:08,939 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:08,939 INFO : Inserting sp|Q88FB2|SUCC_PSEPK
06 Feb 2023 16:06:08,943 INFO : 57% Done
06 Feb 2023 16:06:08,969 INFO : 58% Done
06 Feb 2023 16:06:08,988 DEBUG: Total peptides inserted: 2
06 Feb 2023 16:06:08,988 INFO : Inserting tr|Q88LE4|Q88LE4_PSEPK
06 Feb 2023 16:06:08,991 INFO : 59% Done
06 Feb 2023 16:06:09,014 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:09,014 INFO : Inserting tr|Q88P44|Q88P44_PSEPK
06 Feb 2023 16:06:09,043 INFO : 60% Done
06 Feb 2023 16:06:09,066 DEBUG: Total peptides inserted: 2
06 Feb 2023 16:06:09,066 INFO : Inserting tr|Q88FA9|Q88FA9_PSEPK
06 Feb 2023 16:06:09,070 INFO : 61% Done
06 Feb 2023 16:06:09,093 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:09,093 INFO : Inserting tr|Q88FA6|Q88FA6_PSEPK
06 Feb 2023 16:06:09,097 INFO : 62% Done
06 Feb 2023 16:06:09,122 INFO : 63% Done
06 Feb 2023 16:06:09,140 DEBUG: Total peptides inserted: 2
06 Feb 2023 16:06:09,140 INFO : Inserting tr|Q88F66|Q88F66_PSEPK
06 Feb 2023 16:06:09,144 INFO : 64% Done
06 Feb 2023 16:06:09,166 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:09,166 INFO : Inserting tr|Q88NN0|Q88NN0_PSEPK
06 Feb 2023 16:06:09,190 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:09,190 INFO : Inserting sp|Q88NF9|MQO2_PSEPK
06 Feb 2023 16:06:09,194 INFO : 65% Done
06 Feb 2023 16:06:09,220 INFO : 66% Done
06 Feb 2023 16:06:09,243 DEBUG: Total peptides inserted: 2
06 Feb 2023 16:06:09,243 INFO : Inserting tr|Q88P30|Q88P30_PSEPK
06 Feb 2023 16:06:09,247 INFO : 67% Done
06 Feb 2023 16:06:09,272 INFO : 68% Done
06 Feb 2023 16:06:09,290 DEBUG: Total peptides inserted: 2
06 Feb 2023 16:06:09,290 INFO : Inserting tr|Q88PA6|Q88PA6_PSEPK
06 Feb 2023 16:06:09,293 INFO : 69% Done
06 Feb 2023 16:06:09,316 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:09,316 INFO : Inserting sp|Q88QD4|AROQ1_PSEPK
06 Feb 2023 16:06:09,338 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:09,338 INFO : Inserting sp|P59319|ARGD_PSEPK
06 Feb 2023 16:06:09,341 INFO : 70% Done
06 Feb 2023 16:06:09,367 INFO : 71% Done
06 Feb 2023 16:06:09,392 INFO : 72% Done
06 Feb 2023 16:06:09,414 DEBUG: Total peptides inserted: 3
06 Feb 2023 16:06:09,414 INFO : Inserting tr|Q88FA8|Q88FA8_PSEPK
06 Feb 2023 16:06:09,417 INFO : 73% Done
06 Feb 2023 16:06:09,441 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:09,441 INFO : Inserting tr|Q88C36|Q88C36_PSEPK
06 Feb 2023 16:06:09,468 INFO : 74% Done
06 Feb 2023 16:06:09,510 DEBUG: Total peptides inserted: 3
06 Feb 2023 16:06:09,510 INFO : Inserting sp|Q88D64|PGK_PSEPK
06 Feb 2023 16:06:09,514 INFO : 75% Done
06 Feb 2023 16:06:09,539 INFO : 76% Done
06 Feb 2023 16:06:09,561 DEBUG: Total peptides inserted: 2
06 Feb 2023 16:06:09,561 INFO : Inserting tr|Q88KF4|Q88KF4_PSEPK
06 Feb 2023 16:06:09,581 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:09,581 INFO : Inserting sp|Q88L02|FADB_PSEPK
06 Feb 2023 16:06:09,585 INFO : 77% Done
06 Feb 2023 16:06:09,607 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:09,607 INFO : Inserting tr|Q88KF1|Q88KF1_PSEPK
06 Feb 2023 16:06:09,610 INFO : 78% Done
06 Feb 2023 16:06:09,635 INFO : 79% Done
06 Feb 2023 16:06:09,657 DEBUG: Total peptides inserted: 2
06 Feb 2023 16:06:09,657 INFO : Inserting sp|Q88LE5|LEU3_PSEPK
06 Feb 2023 16:06:09,661 INFO : 80% Done
06 Feb 2023 16:06:09,683 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:09,683 INFO : Inserting tr|Q88EI3|Q88EI3_PSEPK
06 Feb 2023 16:06:09,686 INFO : 81% Done
06 Feb 2023 16:06:09,727 DEBUG: Total peptides inserted: 2
06 Feb 2023 16:06:09,728 INFO : Inserting tr|Q88N36|Q88N36_PSEPK
06 Feb 2023 16:06:09,731 INFO : 82% Done
06 Feb 2023 16:06:09,757 INFO : 83% Done
06 Feb 2023 16:06:09,781 DEBUG: Total peptides inserted: 2
06 Feb 2023 16:06:09,781 INFO : Inserting tr|Q88C32|Q88C32_PSEPK
06 Feb 2023 16:06:09,784 INFO : 84% Done
06 Feb 2023 16:06:09,807 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:09,807 INFO : Inserting tr|Q88EH7|Q88EH7_PSEPK
06 Feb 2023 16:06:09,830 INFO : 85% Done
06 Feb 2023 16:06:09,852 DEBUG: Total peptides inserted: 2
06 Feb 2023 16:06:09,852 INFO : Inserting sp|Q88DW9|PANB_PSEPK
06 Feb 2023 16:06:09,855 INFO : 86% Done
06 Feb 2023 16:06:09,877 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:09,877 INFO : Inserting sp|Q88CN0|RPIA_PSEPK
06 Feb 2023 16:06:09,880 INFO : 87% Done
06 Feb 2023 16:06:09,902 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:09,902 INFO : Inserting sp|Q88MF9|ENO_PSEPK
06 Feb 2023 16:06:09,906 INFO : 88% Done
06 Feb 2023 16:06:09,931 INFO : 89% Done
06 Feb 2023 16:06:09,953 DEBUG: Total peptides inserted: 2
06 Feb 2023 16:06:09,953 INFO : Inserting tr|Q88HH4|Q88HH4_PSEPK
06 Feb 2023 16:06:09,975 INFO : 90% Done
06 Feb 2023 16:06:10,015 DEBUG: Total peptides inserted: 3
06 Feb 2023 16:06:10,016 INFO : 91% Done
06 Feb 2023 16:06:10,016 INFO : Inserting tr|Q88LR3|Q88LR3_PSEPK
06 Feb 2023 16:06:10,038 INFO : 92% Done
06 Feb 2023 16:06:10,076 DEBUG: Total peptides inserted: 3
06 Feb 2023 16:06:10,076 INFO : Inserting tr|Q88C17|Q88C17_PSEPK
06 Feb 2023 16:06:10,079 INFO : 93% Done
06 Feb 2023 16:06:10,098 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:10,098 INFO : Inserting tr|Q88KG6|Q88KG6_PSEPK
06 Feb 2023 16:06:10,101 INFO : 94% Done
06 Feb 2023 16:06:10,119 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:10,119 INFO : Inserting tr|Q88HH8|Q88HH8_PSEPK
06 Feb 2023 16:06:10,140 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:10,140 INFO : Inserting tr|Q88IS1|Q88IS1_PSEPK
06 Feb 2023 16:06:10,143 INFO : 95% Done
06 Feb 2023 16:06:10,164 INFO : 96% Done
06 Feb 2023 16:06:10,186 DEBUG: Total peptides inserted: 2
06 Feb 2023 16:06:10,186 INFO : Inserting tr|Q88HH6|Q88HH6_PSEPK
06 Feb 2023 16:06:10,189 INFO : 97% Done
06 Feb 2023 16:06:10,207 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:10,207 INFO : Inserting sp|P0A101|PCAJ_PSEPK
06 Feb 2023 16:06:10,232 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:10,232 INFO : Inserting sp|Q88LW9|G6PI1_PSEPK
06 Feb 2023 16:06:10,235 INFO : 98% Done
06 Feb 2023 16:06:10,252 DEBUG: Total peptides inserted: 1
06 Feb 2023 16:06:10,254 INFO : Done parsing Skyline document.
06 Feb 2023 16:06:10,255 INFO : Creating and populating temp tables for Proportion values
06 Feb 2023 16:06:10,330 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
06 Feb 2023 16:06:10,479 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
06 Feb 2023 16:06:10,530 INFO : Cleaning up temp tables
06 Feb 2023 16:06:10,766 INFO : Completed import of Skyline document from Putida_Targeted_2023-02-03_13-54-58.sky.zip
06 Feb 2023 16:06:10,768 INFO : 100% Done
06 Feb 2023 16:06:10,773 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/PNNL%20-%20ABF_IMS_SyntheticBio_ae59f4e8-88a8-103b-b327-fea6ddf5f3bc/_temp__2023-02-06_16-06-04/export/xar/experiments_and_runs.xar.exploded/Run150249/Putida_Targeted_2023-02-03_13-54-58.sky.zip into the system
06 Feb 2023 16:06:10,779 INFO : Done importing xar
06 Feb 2023 16:06:10,780 INFO : Loading pages and webpart properties
06 Feb 2023 16:06:10,884 INFO : Done importing 4 page(s) with 7 webpart(s)
06 Feb 2023 16:06:10,884 INFO : Loading File Browser config
06 Feb 2023 16:06:10,884 INFO : Done importing File Browser config
06 Feb 2023 16:06:10,885 INFO : Starting Sample Status Data import
06 Feb 2023 16:06:10,885 INFO : No sample types XAR file to process.
06 Feb 2023 16:06:10,885 INFO : Finished importing Sample Status Data
06 Feb 2023 16:06:10,899 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
06 Feb 2023 16:06:10,902 INFO : A row containing [Description: 'null', Color: '800000', Name: 'Reagent Change'] values already exists. Skipping
06 Feb 2023 16:06:10,902 INFO : A row containing [Description: 'null', Color: 'FF0000', Name: 'Instrumentation Change'] values already exists. Skipping
06 Feb 2023 16:06:10,903 INFO : A row containing [Description: 'null', Color: '0000FF', Name: 'Technician Change'] values already exists. Skipping
06 Feb 2023 16:06:10,903 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
06 Feb 2023 16:06:10,903 INFO : Importing files metadata.
06 Feb 2023 16:06:10,903 DEBUG: [/Panorama Public/2023/PNNL - ABF_IMS_SyntheticBio] Reading files metadata from /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/PNNL - ABF_IMS_SyntheticBio_ae59f4e8-88a8-103b-b327-fea6ddf5f3bc/_temp__2023-02-06_16-06-04/export
06 Feb 2023 16:06:10,903 INFO :
06 Feb 2023 16:06:10,903 INFO : Experiment import completed successfully.
06 Feb 2023 16:06:10,903 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
06 Feb 2023 16:06:10,940 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
06 Feb 2023 16:06:10,941 INFO :
06 Feb 2023 16:06:10,941 INFO : Checking for library folders.
06 Feb 2023 16:06:10,942 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
06 Feb 2023 16:06:10,977 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
06 Feb 2023 16:06:10,977 INFO :
06 Feb 2023 16:06:10,977 INFO : Finishing up experiment copy.
06 Feb 2023 16:06:10,979 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
06 Feb 2023 16:06:10,979 INFO : Setting version on new experiment to 1
06 Feb 2023 16:06:10,979 INFO : Assigning a DOI.
06 Feb 2023 16:06:11,823 INFO : Assigned DOI: 10.6069/6j7y-t592
06 Feb 2023 16:06:11,827 INFO : Updating access URL to point to the new copy of the data.
06 Feb 2023 16:06:11,831 INFO : Removing copy permissions given to Panorama Public
06 Feb 2023 16:06:11,840 INFO : Adding read permissions to all users that are folder admins in the source folder.
06 Feb 2023 16:06:11,848 INFO : Updating the 'Raw Data' tab configuration
06 Feb 2023 16:06:11,850 INFO : Updating dataFileUrls for run Putida_Targeted_2023-02-03_13-54-58.sky.zip; targetedms run ID 152373
06 Feb 2023 16:06:11,850 INFO : Updating dataFileUrl...
06 Feb 2023 16:06:11,850 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/PNNL%20-%20ABF_IMS_SyntheticBio_ae59f4e8-88a8-103b-b327-fea6ddf5f3bc/_temp__2023-02-06_16-06-04/export/xar/experiments_and_runs.xar.exploded/Run150249/Putida_Targeted_2023-02-03_13-54-58/Putida_Targeted.skyd
06 Feb 2023 16:06:11,850 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/PNNL%20-%20ABF_IMS_SyntheticBio/@files/Putida_Targeted_2023-02-03_13-54-58/Putida_Targeted.skyd
06 Feb 2023 16:06:11,851 INFO : Updating dataFileUrl...
06 Feb 2023 16:06:11,852 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/PNNL%20-%20ABF_IMS_SyntheticBio_ae59f4e8-88a8-103b-b327-fea6ddf5f3bc/_temp__2023-02-06_16-06-04/export/xar/experiments_and_runs.xar.exploded/Run150249/Putida_Targeted_2023-02-03_13-54-58.sky.zip
06 Feb 2023 16:06:11,852 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/PNNL%20-%20ABF_IMS_SyntheticBio/@files/Putida_Targeted_2023-02-03_13-54-58.sky.zip
06 Feb 2023 16:06:11,856 INFO : Making folder public.
06 Feb 2023 16:06:11,862 INFO : Hiding the Data Pipeline tab.
06 Feb 2023 16:06:11,866 INFO : Updating Submission. Setting copiedExperimentId to 1574
06 Feb 2023 16:06:11,928 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'