Copying experiment: Peptide centric detection of cross-linked peptides using PASEF, MeroX, and Skyline

MLU Sinz Lab - XL-MS with MeroX and Skyline

Job Status

Created: 2023-11-27 22:09:04
Modified: 2023-11-27 22:10:50
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Copying experiment: Peptide centric detection of cross-linked peptides using PASEF, MeroX, and Skyline
File Path: /data/labkey/files/Panorama Public/2023/MLU Sinz Lab - XL-MS with MeroX and Skyline/@files/Experiment_1815.log
Files: Experiment_1815.log
Completed Runs: MeroX_BSA-DSBU_S-Trap_Refined_2023-07-31_18-08-11.sky.zip
MeroX_BSA-DSBU_S-Trap_2023-07-25_11-20-21.sky.zip
MeroX_BSA-DSBU_S-Trap_Final_2023-09-07_16-28-27.sky.zip
MeroX_BSA-DSBU_S-Trap_DIA-PASEF_2023-11-16_01-18-04.sky.zip

Log File


27 Nov 2023 22:09:04,511 INFO : Copying experiment "Peptide centric detection of cross-linked peptides using PASEF, MeroX, and Skyline" from folder /MLU - Sinz Lab/XL-MS with MeroX and Skyline to /Panorama Public/2023/MLU Sinz Lab - XL-MS with MeroX and Skyline
27 Nov 2023 22:09:04,511 INFO : =======================================
27 Nov 2023 22:09:04,553 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
27 Nov 2023 22:09:04,553 INFO :
27 Nov 2023 22:09:04,553 INFO : Exporting experiment.
27 Nov 2023 22:10:00,688 INFO : Exporting files metadata.
27 Nov 2023 22:10:00,740 INFO :
27 Nov 2023 22:10:00,740 INFO : Experiment export completed successfully.
27 Nov 2023 22:10:00,740 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
27 Nov 2023 22:10:00,764 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
27 Nov 2023 22:10:00,764 INFO :
27 Nov 2023 22:10:00,764 INFO : Importing experiment.
27 Nov 2023 22:10:00,766 INFO : Loading folder properties (folder type, settings and active modules)
27 Nov 2023 22:10:00,830 INFO : Done importing folder properties (folder type, settings and active modules)
27 Nov 2023 22:10:00,831 INFO : Loading container specific module properties
27 Nov 2023 22:10:00,834 INFO : Done importing container specific module properties
27 Nov 2023 22:10:00,835 INFO : Loading etl definitions
27 Nov 2023 22:10:00,836 INFO : Loading wikis
27 Nov 2023 22:10:00,881 INFO : 2 wikis imported
27 Nov 2023 22:10:00,881 INFO : Done importing wikis
27 Nov 2023 22:10:00,883 INFO : Starting Data Class Importer
27 Nov 2023 22:10:00,883 INFO : No types XAR file to process.
27 Nov 2023 22:10:00,883 INFO : Finished Data Class Importer
27 Nov 2023 22:10:00,883 INFO : Starting to copy files
27 Nov 2023 22:10:00,883 INFO : Copied 0 files
27 Nov 2023 22:10:00,884 INFO : Ensuring exp.data rows exist for imported files
27 Nov 2023 22:10:00,963 INFO : Starting Sample Type Importer
27 Nov 2023 22:10:00,964 INFO : No types XAR file to process.
27 Nov 2023 22:10:00,964 INFO : Finished Sample Type Importer
27 Nov 2023 22:10:00,964 INFO : Loading xar
27 Nov 2023 22:10:19,002 INFO : Starting import from MeroX_BSA-DSBU_S-Trap_2023-07-25_11-20-21.sky.zip
27 Nov 2023 22:10:19,005 INFO : Starting to import Skyline document from MeroX_BSA-DSBU_S-Trap_2023-07-25_11-20-21.sky.zip
27 Nov 2023 22:10:19,006 INFO : Expanding MeroX_BSA-DSBU_166ms_corrected.imsdb
27 Nov 2023 22:10:19,007 INFO : Expanding MeroX_BSA_DSBU_S_Trap_q_0_05.blib
27 Nov 2023 22:10:19,047 INFO : Expanding MeroX_BSA_DSBU_S_Trap_q_0_05.redundant.blib
27 Nov 2023 22:10:19,288 INFO : Expanding MeroX_BSA-DSBU_S-Trap.skyd
27 Nov 2023 22:10:19,648 INFO : Expanding MeroX_BSA-DSBU_S-Trap.sky.view
27 Nov 2023 22:10:19,649 INFO : Expanding MeroX_BSA-DSBU_S-Trap.sky
27 Nov 2023 22:10:19,667 INFO : Expanding MeroX_BSA-DSBU_S-Trap.skyl
27 Nov 2023 22:10:19,708 INFO : 1% Done
27 Nov 2023 22:10:20,433 INFO : Inserting Library Peptides
27 Nov 2023 22:10:20,449 INFO : 2% Done
27 Nov 2023 22:10:20,475 INFO : 3% Done
27 Nov 2023 22:10:20,501 INFO : 4% Done
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27 Nov 2023 22:10:23,142 INFO : 98% Done
27 Nov 2023 22:10:23,174 INFO : Done parsing Skyline document.
27 Nov 2023 22:10:23,294 INFO : Creating and populating temp tables for Proportion values
27 Nov 2023 22:10:23,418 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
27 Nov 2023 22:10:23,531 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
27 Nov 2023 22:10:23,580 INFO : Cleaning up temp tables
27 Nov 2023 22:10:23,920 INFO : Completed import of Skyline document from MeroX_BSA-DSBU_S-Trap_2023-07-25_11-20-21.sky.zip
27 Nov 2023 22:10:23,922 INFO : 100% Done
27 Nov 2023 22:10:23,927 INFO : Starting import from MeroX_BSA-DSBU_S-Trap_Refined_2023-07-31_18-08-11.sky.zip
27 Nov 2023 22:10:23,929 INFO : Starting to import Skyline document from MeroX_BSA-DSBU_S-Trap_Refined_2023-07-31_18-08-11.sky.zip
27 Nov 2023 22:10:23,930 INFO : Expanding Pierce_BSA-DSBU_Col20230608.irtdb
27 Nov 2023 22:10:23,931 INFO : Expanding MeroX_BSA-DSBU_166ms_corrected.imsdb
27 Nov 2023 22:10:23,932 INFO : Expanding MeroX_BSA_DSBU_S_Trap_q_0_05.blib
27 Nov 2023 22:10:23,970 INFO : Expanding MeroX_BSA_DSBU_S_Trap_q_0_05.redundant.blib
27 Nov 2023 22:10:24,220 INFO : Expanding MeroX_BSA-DSBU_S-Trap_Refined.skyd
27 Nov 2023 22:10:26,114 INFO : Expanding MeroX_BSA-DSBU_S-Trap_Refined.sky.view
27 Nov 2023 22:10:26,120 INFO : Expanding MeroX_BSA-DSBU_S-Trap_Refined.sky
27 Nov 2023 22:10:26,141 INFO : Expanding MeroX_BSA-DSBU_S-Trap_Refined.skyl
27 Nov 2023 22:10:26,229 INFO : 1% Done
27 Nov 2023 22:10:26,959 INFO : Inserting Pierce standards
27 Nov 2023 22:10:26,982 INFO : 2% Done
27 Nov 2023 22:10:27,010 INFO : 3% Done
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27 Nov 2023 22:10:27,105 INFO : 6% Done
27 Nov 2023 22:10:27,139 INFO : Inserting Library Peptides
27 Nov 2023 22:10:27,142 INFO : 7% Done
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27 Nov 2023 22:10:29,946 INFO : Done parsing Skyline document.
27 Nov 2023 22:10:29,946 INFO : Calculating iRT correlations for 13 sample(s)
27 Nov 2023 22:10:29,960 INFO : Calculated iRT regression line from full standard list.
27 Nov 2023 22:10:29,975 INFO : Calculated iRT regression line from full standard list.
27 Nov 2023 22:10:29,989 INFO : Calculated iRT regression line from full standard list.
27 Nov 2023 22:10:30,002 INFO : Calculated iRT regression line from full standard list.
27 Nov 2023 22:10:30,016 INFO : Calculated iRT regression line from full standard list.
27 Nov 2023 22:10:30,029 INFO : Calculated iRT regression line from full standard list.
27 Nov 2023 22:10:30,042 INFO : Calculated iRT regression line from full standard list.
27 Nov 2023 22:10:30,055 INFO : Calculated iRT regression line from full standard list.
27 Nov 2023 22:10:30,069 INFO : Calculated iRT regression line from full standard list.
27 Nov 2023 22:10:30,082 INFO : Calculated iRT regression line from full standard list.
27 Nov 2023 22:10:30,095 INFO : Calculated iRT regression line from full standard list.
27 Nov 2023 22:10:30,108 INFO : Calculated iRT regression line from full standard list.
27 Nov 2023 22:10:30,122 INFO : Calculated iRT regression line from full standard list.
27 Nov 2023 22:10:30,122 INFO : Finished calculating iRT correlations for all samples. 13 had a regression line calculated.
27 Nov 2023 22:10:30,344 INFO : Creating and populating temp tables for Proportion values
27 Nov 2023 22:10:30,469 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
27 Nov 2023 22:10:30,594 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
27 Nov 2023 22:10:30,649 INFO : Cleaning up temp tables
27 Nov 2023 22:10:30,924 INFO : Completed import of Skyline document from MeroX_BSA-DSBU_S-Trap_Refined_2023-07-31_18-08-11.sky.zip
27 Nov 2023 22:10:30,926 INFO : 100% Done
27 Nov 2023 22:10:30,931 INFO : Starting import from MeroX_BSA-DSBU_S-Trap_Final_2023-09-07_16-28-27.sky.zip
27 Nov 2023 22:10:30,933 INFO : Starting to import Skyline document from MeroX_BSA-DSBU_S-Trap_Final_2023-09-07_16-28-27.sky.zip
27 Nov 2023 22:10:30,933 INFO : Expanding Pierce_BSA-DSBU_Col20230608.irtdb
27 Nov 2023 22:10:30,935 INFO : Expanding MeroX_BSA-DSBU_166ms_corrected.imsdb
27 Nov 2023 22:10:30,935 INFO : Expanding MeroX_BSA_DSBU_S_Trap_q_0_05.blib
27 Nov 2023 22:10:30,973 INFO : Expanding MeroX_BSA_DSBU_S_Trap_q_0_05.redundant.blib
27 Nov 2023 22:10:31,222 INFO : Expanding MeroX_BSA-DSBU_S-Trap_Final.skyd
27 Nov 2023 22:10:32,949 INFO : Expanding MeroX_BSA-DSBU_S-Trap_Final.sky.view
27 Nov 2023 22:10:33,041 INFO : Expanding MeroX_BSA-DSBU_S-Trap_Final.sky
27 Nov 2023 22:10:33,070 INFO : Expanding MeroX_BSA-DSBU_S-Trap_Final.skyl
27 Nov 2023 22:10:33,224 INFO : 1% Done
27 Nov 2023 22:10:33,887 INFO : Inserting Pierce standards
27 Nov 2023 22:10:33,908 INFO : 2% Done
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27 Nov 2023 22:10:34,043 INFO : 7% Done
27 Nov 2023 22:10:34,061 INFO : Inserting Library Peptides
27 Nov 2023 22:10:34,074 INFO : 8% Done
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27 Nov 2023 22:10:35,916 INFO : 86% Done
27 Nov 2023 22:10:35,942 INFO : 87% Done
27 Nov 2023 22:10:35,968 INFO : 88% Done
27 Nov 2023 22:10:36,002 INFO : 89% Done
27 Nov 2023 22:10:36,022 INFO : 90% Done
27 Nov 2023 22:10:36,047 INFO : 91% Done
27 Nov 2023 22:10:36,079 INFO : 92% Done
27 Nov 2023 22:10:36,099 INFO : 93% Done
27 Nov 2023 22:10:36,117 INFO : 94% Done
27 Nov 2023 22:10:36,146 INFO : 95% Done
27 Nov 2023 22:10:36,159 INFO : 96% Done
27 Nov 2023 22:10:36,182 INFO : 97% Done
27 Nov 2023 22:10:36,208 INFO : 98% Done
27 Nov 2023 22:10:36,236 INFO : Done parsing Skyline document.
27 Nov 2023 22:10:36,236 INFO : Calculating iRT correlations for 13 sample(s)
27 Nov 2023 22:10:36,250 INFO : Calculated iRT regression line from full standard list.
27 Nov 2023 22:10:36,263 INFO : Calculated iRT regression line from full standard list.
27 Nov 2023 22:10:36,276 INFO : Calculated iRT regression line from full standard list.
27 Nov 2023 22:10:36,289 INFO : Calculated iRT regression line from full standard list.
27 Nov 2023 22:10:36,302 INFO : Calculated iRT regression line from full standard list.
27 Nov 2023 22:10:36,316 INFO : Calculated iRT regression line from full standard list.
27 Nov 2023 22:10:36,329 INFO : Calculated iRT regression line from full standard list.
27 Nov 2023 22:10:36,342 INFO : Calculated iRT regression line from full standard list.
27 Nov 2023 22:10:36,355 INFO : Calculated iRT regression line from full standard list.
27 Nov 2023 22:10:36,368 INFO : Calculated iRT regression line from full standard list.
27 Nov 2023 22:10:36,381 INFO : Calculated iRT regression line from full standard list.
27 Nov 2023 22:10:36,394 INFO : Calculated iRT regression line from full standard list.
27 Nov 2023 22:10:36,407 INFO : Calculated iRT regression line from full standard list.
27 Nov 2023 22:10:36,408 INFO : Finished calculating iRT correlations for all samples. 13 had a regression line calculated.
27 Nov 2023 22:10:36,667 INFO : Creating and populating temp tables for Proportion values
27 Nov 2023 22:10:36,797 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
27 Nov 2023 22:10:36,910 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
27 Nov 2023 22:10:36,960 INFO : Cleaning up temp tables
27 Nov 2023 22:10:37,225 INFO : Completed import of Skyline document from MeroX_BSA-DSBU_S-Trap_Final_2023-09-07_16-28-27.sky.zip
27 Nov 2023 22:10:37,230 INFO : 100% Done
27 Nov 2023 22:10:37,237 INFO : Starting import from MeroX_BSA-DSBU_S-Trap_DIA-PASEF_2023-11-16_01-18-04.sky.zip
27 Nov 2023 22:10:37,239 INFO : Starting to import Skyline document from MeroX_BSA-DSBU_S-Trap_DIA-PASEF_2023-11-16_01-18-04.sky.zip
27 Nov 2023 22:10:37,240 INFO : Expanding Pierce_BSA-DSBU_Col20230608.irtdb
27 Nov 2023 22:10:37,242 INFO : Expanding MeroX_BSA-DSBU_166ms_corrected.imsdb
27 Nov 2023 22:10:37,243 INFO : Expanding MeroX_BSA_DSBU_S_Trap_HighCE_q_0_05.blib
27 Nov 2023 22:10:37,280 INFO : Expanding MeroX_BSA_DSBU_S_Trap_HighCE_q_0_05.redundant.blib
27 Nov 2023 22:10:37,476 INFO : Expanding MeroX_BSA_DSBU_S_Trap_MidCE_q_0_05.blib
27 Nov 2023 22:10:37,499 INFO : Expanding MeroX_BSA_DSBU_S_Trap_MidCE_q_0_05.redundant.blib
27 Nov 2023 22:10:37,561 INFO : Expanding MeroX_BSA_DSBU_S_Trap_LowCE_q_0_05.blib
27 Nov 2023 22:10:37,592 INFO : Expanding MeroX_BSA_DSBU_S_Trap_LowCE_q_0_05.redundant.blib
27 Nov 2023 22:10:37,824 INFO : Expanding MeroX_BSA_DSBU_S_Trap_q_0_05.blib
27 Nov 2023 22:10:37,935 INFO : Expanding MeroX_BSA_DSBU_S_Trap_q_0_05.redundant.blib
27 Nov 2023 22:10:38,195 INFO : Expanding MeroX_BSA-DSBU_S-Trap_DIA-PASEF.skyd
27 Nov 2023 22:10:40,169 INFO : Expanding MeroX_BSA-DSBU_S-Trap_DIA-PASEF.sky.view
27 Nov 2023 22:10:40,170 INFO : Expanding MeroX_BSA-DSBU_S-Trap_DIA-PASEF.sky
27 Nov 2023 22:10:40,192 INFO : Expanding MeroX_BSA-DSBU_S-Trap_DIA-PASEF.skyl
27 Nov 2023 22:10:40,325 INFO : 1% Done
27 Nov 2023 22:10:41,344 INFO : Inserting Pierce standards
27 Nov 2023 22:10:41,349 INFO : 2% Done
27 Nov 2023 22:10:41,391 INFO : 3% Done
27 Nov 2023 22:10:41,452 INFO : 4% Done
27 Nov 2023 22:10:41,483 INFO : 5% Done
27 Nov 2023 22:10:41,519 INFO : 6% Done
27 Nov 2023 22:10:41,570 INFO : 7% Done
27 Nov 2023 22:10:41,579 INFO : Inserting Library Peptides
27 Nov 2023 22:10:41,597 INFO : 8% Done
27 Nov 2023 22:10:41,634 INFO : 9% Done
27 Nov 2023 22:10:41,650 INFO : 10% Done
27 Nov 2023 22:10:41,676 INFO : 11% Done
27 Nov 2023 22:10:41,728 INFO : 12% Done
27 Nov 2023 22:10:41,755 INFO : 13% Done
27 Nov 2023 22:10:41,781 INFO : 14% Done
27 Nov 2023 22:10:41,821 INFO : 15% Done
27 Nov 2023 22:10:41,838 INFO : 16% Done
27 Nov 2023 22:10:41,878 INFO : 17% Done
27 Nov 2023 22:10:41,907 INFO : 18% Done
27 Nov 2023 22:10:41,944 INFO : 19% Done
27 Nov 2023 22:10:41,972 INFO : 20% Done
27 Nov 2023 22:10:41,998 INFO : 21% Done
27 Nov 2023 22:10:42,027 INFO : 22% Done
27 Nov 2023 22:10:42,078 INFO : 23% Done
27 Nov 2023 22:10:42,094 INFO : 24% Done
27 Nov 2023 22:10:42,135 INFO : 25% Done
27 Nov 2023 22:10:42,205 INFO : 27% Done
27 Nov 2023 22:10:42,255 INFO : 28% Done
27 Nov 2023 22:10:42,283 INFO : 29% Done
27 Nov 2023 22:10:42,318 INFO : 30% Done
27 Nov 2023 22:10:42,359 INFO : 31% Done
27 Nov 2023 22:10:42,386 INFO : 32% Done
27 Nov 2023 22:10:42,415 INFO : 34% Done
27 Nov 2023 22:10:42,475 INFO : 35% Done
27 Nov 2023 22:10:42,494 INFO : 36% Done
27 Nov 2023 22:10:42,533 INFO : 37% Done
27 Nov 2023 22:10:42,570 INFO : 38% Done
27 Nov 2023 22:10:42,608 INFO : 39% Done
27 Nov 2023 22:10:42,634 INFO : 40% Done
27 Nov 2023 22:10:42,662 INFO : 41% Done
27 Nov 2023 22:10:42,702 INFO : 42% Done
27 Nov 2023 22:10:42,718 INFO : 43% Done
27 Nov 2023 22:10:42,769 INFO : 44% Done
27 Nov 2023 22:10:42,798 INFO : 45% Done
27 Nov 2023 22:10:42,816 INFO : 46% Done
27 Nov 2023 22:10:42,866 INFO : 47% Done
27 Nov 2023 22:10:42,895 INFO : 48% Done
27 Nov 2023 22:10:42,912 INFO : 49% Done
27 Nov 2023 22:10:42,967 INFO : 50% Done
27 Nov 2023 22:10:42,983 INFO : 51% Done
27 Nov 2023 22:10:43,014 INFO : 52% Done
27 Nov 2023 22:10:43,054 INFO : 53% Done
27 Nov 2023 22:10:43,097 INFO : 54% Done
27 Nov 2023 22:10:43,122 INFO : 55% Done
27 Nov 2023 22:10:43,168 INFO : 57% Done
27 Nov 2023 22:10:43,207 INFO : 58% Done
27 Nov 2023 22:10:43,244 INFO : 59% Done
27 Nov 2023 22:10:43,271 INFO : 60% Done
27 Nov 2023 22:10:43,307 INFO : 61% Done
27 Nov 2023 22:10:43,349 INFO : 62% Done
27 Nov 2023 22:10:43,377 INFO : 63% Done
27 Nov 2023 22:10:43,414 INFO : 64% Done
27 Nov 2023 22:10:43,442 INFO : 65% Done
27 Nov 2023 22:10:43,476 INFO : 66% Done
27 Nov 2023 22:10:43,492 INFO : 67% Done
27 Nov 2023 22:10:43,519 INFO : 68% Done
27 Nov 2023 22:10:43,571 INFO : 69% Done
27 Nov 2023 22:10:43,601 INFO : 70% Done
27 Nov 2023 22:10:43,617 INFO : 71% Done
27 Nov 2023 22:10:43,669 INFO : 72% Done
27 Nov 2023 22:10:43,697 INFO : 73% Done
27 Nov 2023 22:10:43,713 INFO : 74% Done
27 Nov 2023 22:10:43,997 INFO : 75% Done
27 Nov 2023 22:10:44,210 INFO : 76% Done
27 Nov 2023 22:10:44,252 INFO : 77% Done
27 Nov 2023 22:10:44,281 INFO : 78% Done
27 Nov 2023 22:10:44,308 INFO : 79% Done
27 Nov 2023 22:10:44,351 INFO : 80% Done
27 Nov 2023 22:10:44,379 INFO : 81% Done
27 Nov 2023 22:10:44,407 INFO : 82% Done
27 Nov 2023 22:10:44,425 INFO : 83% Done
27 Nov 2023 22:10:44,484 INFO : 84% Done
27 Nov 2023 22:10:44,501 INFO : 85% Done
27 Nov 2023 22:10:44,534 INFO : 86% Done
27 Nov 2023 22:10:44,575 INFO : 87% Done
27 Nov 2023 22:10:44,614 INFO : 88% Done
27 Nov 2023 22:10:44,649 INFO : 89% Done
27 Nov 2023 22:10:44,679 INFO : 90% Done
27 Nov 2023 22:10:44,708 INFO : 91% Done
27 Nov 2023 22:10:44,736 INFO : 92% Done
27 Nov 2023 22:10:44,766 INFO : 93% Done
27 Nov 2023 22:10:44,792 INFO : 94% Done
27 Nov 2023 22:10:44,832 INFO : 95% Done
27 Nov 2023 22:10:44,876 INFO : 97% Done
27 Nov 2023 22:10:44,913 INFO : 98% Done
27 Nov 2023 22:10:44,952 INFO : Done parsing Skyline document.
27 Nov 2023 22:10:44,952 INFO : Calculating iRT correlations for 14 sample(s)
27 Nov 2023 22:10:44,967 INFO : Calculated iRT regression line from full standard list.
27 Nov 2023 22:10:44,981 INFO : Calculated iRT regression line from full standard list.
27 Nov 2023 22:10:44,994 INFO : Calculated iRT regression line from full standard list.
27 Nov 2023 22:10:45,008 INFO : Calculated iRT regression line from full standard list.
27 Nov 2023 22:10:45,021 INFO : Calculated iRT regression line from full standard list.
27 Nov 2023 22:10:45,035 INFO : Calculated iRT regression line from full standard list.
27 Nov 2023 22:10:45,048 INFO : Calculated iRT regression line from full standard list.
27 Nov 2023 22:10:45,062 INFO : Calculated iRT regression line from full standard list.
27 Nov 2023 22:10:45,075 INFO : Calculated iRT regression line from full standard list.
27 Nov 2023 22:10:45,089 INFO : Calculated iRT regression line from full standard list.
27 Nov 2023 22:10:45,102 INFO : Calculated iRT regression line from full standard list.
27 Nov 2023 22:10:45,116 INFO : Calculated iRT regression line from full standard list.
27 Nov 2023 22:10:45,129 INFO : Calculated iRT regression line from full standard list.
27 Nov 2023 22:10:45,143 INFO : Calculated iRT regression line from full standard list.
27 Nov 2023 22:10:45,143 INFO : Finished calculating iRT correlations for all samples. 14 had a regression line calculated.
27 Nov 2023 22:10:45,464 INFO : Creating and populating temp tables for Proportion values
27 Nov 2023 22:10:45,589 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
27 Nov 2023 22:10:45,707 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
27 Nov 2023 22:10:45,756 INFO : Cleaning up temp tables
27 Nov 2023 22:10:46,046 INFO : Completed import of Skyline document from MeroX_BSA-DSBU_S-Trap_DIA-PASEF_2023-11-16_01-18-04.sky.zip
27 Nov 2023 22:10:46,049 INFO : 100% Done
27 Nov 2023 22:10:46,067 INFO : Done importing xar
27 Nov 2023 22:10:46,069 INFO : Loading pages and webpart properties
27 Nov 2023 22:10:46,146 INFO : Done importing 4 page(s) with 9 webpart(s)
27 Nov 2023 22:10:46,146 INFO : Loading File Browser config
27 Nov 2023 22:10:46,146 INFO : Done importing File Browser config
27 Nov 2023 22:10:46,147 INFO : Starting Sample Status Data import
27 Nov 2023 22:10:46,147 INFO : No sample types XAR file to process.
27 Nov 2023 22:10:46,147 INFO : Finished importing Sample Status Data
27 Nov 2023 22:10:46,152 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
27 Nov 2023 22:10:46,154 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
27 Nov 2023 22:10:46,155 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
27 Nov 2023 22:10:46,155 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
27 Nov 2023 22:10:46,156 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
27 Nov 2023 22:10:46,156 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
27 Nov 2023 22:10:46,158 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
27 Nov 2023 22:10:46,166 INFO : Moving files to folder /Panorama Public/2023/MLU Sinz Lab - XL-MS with MeroX and Skyline and creating symlinks
27 Nov 2023 22:10:46,772 INFO : Aligning data files urls in folder: /Panorama Public/2023/MLU Sinz Lab - XL-MS with MeroX and Skyline
27 Nov 2023 22:10:46,796 INFO : Importing files metadata.
27 Nov 2023 22:10:46,797 INFO :
27 Nov 2023 22:10:46,797 INFO : Experiment import completed successfully.
27 Nov 2023 22:10:46,797 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
27 Nov 2023 22:10:46,816 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
27 Nov 2023 22:10:46,816 INFO :
27 Nov 2023 22:10:46,816 INFO : Checking for library folders.
27 Nov 2023 22:10:46,818 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
27 Nov 2023 22:10:46,832 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
27 Nov 2023 22:10:46,832 INFO :
27 Nov 2023 22:10:46,832 INFO : Finishing up experiment copy.
27 Nov 2023 22:10:46,834 INFO : Updating TargetedMS experiment entry in target folder /Panorama Public/2023/MLU Sinz Lab - XL-MS with MeroX and Skyline
27 Nov 2023 22:10:46,834 INFO : Setting version on new experiment to 1
27 Nov 2023 22:10:46,837 INFO : Updating permanent link to point to the new copy of the data.
27 Nov 2023 22:10:46,841 INFO : Removing copy permissions given to Panorama Public
27 Nov 2023 22:10:46,850 INFO : Adding read permissions to all users that are folder admins in the source folder.
27 Nov 2023 22:10:46,851 INFO : Assigning ReaderRole to christian.arlt@pharmazie.uni-halle.de
27 Nov 2023 22:10:46,851 INFO : Assigning ReaderRole to marc.kipping@pharmazie.uni-halle.de
27 Nov 2023 22:10:46,851 INFO : Assigning ReaderRole to juan-camilo.rojas-echeverri@pharmazie.uni-halle.de
27 Nov 2023 22:10:46,851 INFO : Assigning ReaderRole to andrea.sinz@pharmazie.uni-halle.de
27 Nov 2023 22:10:46,851 INFO : Assigning ReaderRole to christian.ihling@pharmazie.uni-halle.de
27 Nov 2023 22:10:46,851 INFO : Assigning PanoramaPublicSubmitterRole to juan-camilo.rojas-echeverri@pharmazie.uni-halle.de
27 Nov 2023 22:10:46,851 INFO : Assigning PanoramaPublicSubmitterRole to andrea.sinz@pharmazie.uni-halle.de
27 Nov 2023 22:10:46,860 INFO : Adding user juan-camilo.rojas-echeverri@pharmazie.uni-halle.de to group Panorama Public Submitters
27 Nov 2023 22:10:46,865 INFO : Adding user andrea.sinz@pharmazie.uni-halle.de to group Panorama Public Submitters
27 Nov 2023 22:10:46,866 INFO : Updating the 'Raw Data' tab configuration
27 Nov 2023 22:10:46,867 INFO : Creating a reviewer account.
27 Nov 2023 22:10:47,053 INFO : Created reviewer with email: User panorama+reviewer226@proteinms.net
27 Nov 2023 22:10:47,066 INFO : Adding user panorama+reviewer226@proteinms.net to group Reviewers
27 Nov 2023 22:10:47,068 INFO : Hiding the Data Pipeline tab.
27 Nov 2023 22:10:47,072 INFO : Updating Submission. Setting copiedExperimentId to 1728
27 Nov 2023 22:10:48,981 INFO : Assigning a ProteomeXchange ID.
27 Nov 2023 22:10:49,289 INFO : Assigned ProteomeXchange ID: PXD047307
27 Nov 2023 22:10:49,289 INFO : Assigning a DOI.
27 Nov 2023 22:10:50,029 INFO : Assigned DOI: 10.6069/v4kw-2s97
27 Nov 2023 22:10:50,096 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'