23 May 2023 18:16:53,890 INFO : Copying experiment "Assessing the role of trypsin in quantitative plasma- and single-cell
proteomics towards clinical application" from folder /KTH - Uhlen Lab/Trypsin Comparison to /Panorama Public/2023/KTH Uhlen Lab - Trypsin Comparison
23 May 2023 18:16:53,890 INFO : =======================================
23 May 2023 18:16:53,903 DEBUG: Resetting Job ID: 6986b692-dbfe-103b-965b-fea6ddf56188
23 May 2023 18:16:53,921 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
23 May 2023 18:16:53,921 INFO :
23 May 2023 18:16:53,921 INFO : Exporting experiment.
23 May 2023 18:32:04,909 INFO : Exporting files metadata.
23 May 2023 18:32:04,909 DEBUG: [/KTH - Uhlen Lab/Trypsin Comparison] Writing files metadata to /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH Uhlen Lab - Trypsin Comparison_6986b671-dbfe-103b-965b-fea6ddf56188/_temp__2023-05-23_18-16-53/export
23 May 2023 18:32:05,225 INFO :
23 May 2023 18:32:05,225 INFO : Experiment export completed successfully.
23 May 2023 18:32:05,225 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
23 May 2023 18:32:09,116 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
23 May 2023 18:32:09,116 INFO :
23 May 2023 18:32:09,116 INFO : Importing experiment.
23 May 2023 18:32:09,117 DEBUG: [/Panorama Public/2023/KTH Uhlen Lab - Trypsin Comparison] Importing folder properties from: /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH Uhlen Lab - Trypsin Comparison_6986b671-dbfe-103b-965b-fea6ddf56188/_temp__2023-05-23_18-16-53/export
23 May 2023 18:32:09,118 INFO : Loading folder properties (folder type, settings and active modules)
23 May 2023 18:32:09,118 DEBUG: [/Panorama Public/2023/KTH Uhlen Lab - Trypsin Comparison] Folder type: Targeted MS
23 May 2023 18:32:09,118 DEBUG: [/Panorama Public/2023/KTH Uhlen Lab - Trypsin Comparison] Active modules: MS2, FileContent, Announcements, Assay, Wiki, Experiment, Core, Issues, Search, API, PanoramaPublic, TargetedMS, Query, Pipeline
23 May 2023 18:32:09,174 INFO : Done importing folder properties (folder type, settings and active modules)
23 May 2023 18:32:09,175 INFO : Loading container specific module properties
23 May 2023 18:32:09,183 INFO : Done importing container specific module properties
23 May 2023 18:32:09,184 INFO : Loading etl definitions
23 May 2023 18:32:09,185 INFO : Loading wikis
23 May 2023 18:32:09,189 INFO : 1 wiki imported
23 May 2023 18:32:09,189 INFO : Done importing wikis
23 May 2023 18:32:09,189 INFO : Starting to copy files
23 May 2023 18:34:10,130 INFO : 214 files copied, now copying 230515_HB_JW_FAIMS_U3000_uPAC_wishDIA_Promega_Gold_05ng_G7.raw
23 May 2023 18:34:24,582 INFO : 238 files copied, now copying 221212_DDA_Hela_Sigma_EMS0007_50_3.raw
23 May 2023 18:36:30,445 INFO : 258 files copied, now copying 221212_DDA_Hela_Roche_50_1.raw
23 May 2023 18:38:35,773 INFO : 278 files copied, now copying 221212_DDA_Hela_Sigma_EMS0007_50_2.raw
23 May 2023 18:39:00,403 INFO : 282 files copied, now copying 220822_DA_Pool6_Screen_15min_1minRTW_450_3reactions_reduced.raw
23 May 2023 18:39:07,881 INFO : 298 files copied, now copying 221213_SRM_HL_Plasma_Promega_Platinum_20_3.raw
23 May 2023 18:39:53,896 INFO : 389 files copied, now copying 221213_DIA_Plasma_Promega_Platinum_20_2.raw
23 May 2023 18:41:58,740 INFO : 415 files copied, now copying 221213_DIA_Plasma_Sigma_EMS0006_50_4.raw
23 May 2023 18:44:00,581 INFO : 441 files copied, now copying 221213_DIA_Plasma_Thermo_211130_50_4.raw
23 May 2023 18:46:01,349 INFO : 462 files copied, now copying 221213_DIA_Plasma_Thermo_211130_20_1.raw
23 May 2023 18:47:12,436 INFO : 477 files copied, now copying Trypsin_Comparison.skyd
23 May 2023 18:47:16,852 INFO : 485 files copied, now copying StandardCurves.pdf
23 May 2023 18:47:16,855 INFO : Copied 486 files
23 May 2023 18:47:16,855 INFO : Ensuring exp.data rows exist for imported files
23 May 2023 18:47:18,594 INFO : Starting Sample Type and Data Class import
23 May 2023 18:47:18,595 INFO : No types XAR file to process.
23 May 2023 18:47:18,595 INFO : Finished importing Sample Types and Data Classes
23 May 2023 18:47:18,596 INFO : Loading xar
23 May 2023 18:47:21,885 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-11620:TargetedMS.ImportSkyZip'
23 May 2023 18:47:21,888 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-11620:TargetedMS.ImportSkyZip.Core'
23 May 2023 18:47:21,889 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-11620:TargetedMS.ImportSkyZip.Output'
23 May 2023 18:47:21,889 DEBUG: Protocol import complete
23 May 2023 18:47:21,890 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-11620:Assessing+the+role+of+trypsin+in+quantitative+plasma-+and+single-cell%0D%0Aproteomics+towards+clinical+application'
23 May 2023 18:47:21,890 DEBUG: Experiment/Run group import complete
23 May 2023 18:47:21,899 DEBUG: Protocol action set import complete
23 May 2023 18:47:21,916 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11620:TargetedMS.ImportSkyZip'
23 May 2023 18:47:21,921 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11620:88599490-76f0-103b-8435-fea6ddf5de34'
23 May 2023 18:47:21,924 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11620:885993e8-76f0-103b-8435-fea6ddf5de34'
23 May 2023 18:47:21,924 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11620:TargetedMS.ImportSkyZip.Core'
23 May 2023 18:47:21,926 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11620:TargetedMS.ImportSkyZip.Output'
23 May 2023 18:47:21,927 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11620:7c9d5641-76f1-103b-8435-fea6ddf5de34'
23 May 2023 18:47:21,931 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11620:TargetedMS.ImportSkyZip'
23 May 2023 18:47:21,935 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11620:4eb3bcd4-788f-103b-8435-fea6ddf5de34'
23 May 2023 18:47:21,937 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11620:4eb3bc3c-788f-103b-8435-fea6ddf5de34'
23 May 2023 18:47:21,937 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11620:TargetedMS.ImportSkyZip.Core'
23 May 2023 18:47:21,939 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11620:TargetedMS.ImportSkyZip.Output'
23 May 2023 18:47:21,939 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11620:4eb3c13e-788f-103b-8435-fea6ddf5de34'
23 May 2023 18:47:21,942 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20Trypsin%20Comparison_6986b671-dbfe-103b-965b-fea6ddf56188/_temp__2023-05-23_18-16-53/export/xar/experiments_and_runs.xar.exploded/Run148642/Trypsin_Comparison_Standard_Curves_2023-01-15_12-00-52/Trypsin_Comparison_Standard_Curves.skyd into the system
23 May 2023 18:47:21,942 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20Trypsin%20Comparison_6986b671-dbfe-103b-965b-fea6ddf56188/_temp__2023-05-23_18-16-53/export/xar/experiments_and_runs.xar.exploded/Run148642/Trypsin_Comparison_Standard_Curves_2023-01-15_12-00-52/Trypsin_Comparison_Standard_Curves.skyd into the system
23 May 2023 18:47:21,942 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20Trypsin%20Comparison_6986b671-dbfe-103b-965b-fea6ddf56188/_temp__2023-05-23_18-16-53/export/xar/experiments_and_runs.xar.exploded/Run148642/Trypsin_Comparison_Standard_Curves_2023-01-15_12-00-52.sky.zip into the system
23 May 2023 18:47:21,943 INFO : Starting import from Trypsin_Comparison_Standard_Curves_2023-01-15_12-00-52.sky.zip
23 May 2023 18:47:21,946 INFO : Starting to import Skyline document from Trypsin_Comparison_Standard_Curves_2023-01-15_12-00-52.sky.zip
23 May 2023 18:47:21,955 INFO : Expanding 220628_Uniprot_HumanProteome_UP000005640.protdb
23 May 2023 18:47:24,131 INFO : Expanding irt_library_qtag_20190703.irtdb
23 May 2023 18:47:24,134 INFO : Expanding DA_CE_library.optdb
23 May 2023 18:47:24,171 INFO : Expanding SRM_Assay_Library_133Prot_295Pep_rev3.clib
23 May 2023 18:47:24,179 INFO : Expanding Trypsin_Comparison_Standard_Curves.skyd
23 May 2023 18:47:24,444 INFO : Expanding Trypsin_Comparison_Standard_Curves.sky.view
23 May 2023 18:47:24,444 INFO : Expanding Trypsin_Comparison_Standard_Curves.sky
23 May 2023 18:47:24,512 INFO : Expanding Trypsin_Comparison_Standard_Curves.skyl
23 May 2023 18:47:25,468 DEBUG: Starting to load chromatogram headers
23 May 2023 18:47:25,499 DEBUG: Done loading chromatogram headers
23 May 2023 18:47:26,502 INFO : Inserting QTag
23 May 2023 18:47:26,563 INFO : 1% Done
23 May 2023 18:47:26,822 INFO : 2% Done
23 May 2023 18:47:26,871 DEBUG: Total peptides inserted: 7
23 May 2023 18:47:26,871 INFO : Inserting HPRR140840
23 May 2023 18:47:27,256 INFO : 3% Done
23 May 2023 18:47:27,416 DEBUG: Total peptides inserted: 3
23 May 2023 18:47:27,416 INFO : Inserting HPRR280081
23 May 2023 18:47:27,715 INFO : 4% Done
23 May 2023 18:47:27,887 DEBUG: Total peptides inserted: 3
23 May 2023 18:47:27,887 INFO : Inserting HPRR280090
23 May 2023 18:47:28,067 DEBUG: Total peptides inserted: 1
23 May 2023 18:47:28,067 INFO : Inserting HPRR280106
23 May 2023 18:47:28,075 INFO : 5% Done
23 May 2023 18:47:28,565 INFO : 6% Done
23 May 2023 18:47:28,732 DEBUG: Total peptides inserted: 4
23 May 2023 18:47:28,732 INFO : Inserting HPRR320015
23 May 2023 18:47:28,926 INFO : 7% Done
23 May 2023 18:47:29,192 DEBUG: Total peptides inserted: 3
23 May 2023 18:47:29,192 INFO : Inserting HPRR320021
23 May 2023 18:47:29,350 INFO : 8% Done
23 May 2023 18:47:29,809 INFO : 9% Done
23 May 2023 18:47:29,968 DEBUG: Total peptides inserted: 5
23 May 2023 18:47:29,968 INFO : Inserting HPRR350027
23 May 2023 18:47:30,130 DEBUG: Total peptides inserted: 1
23 May 2023 18:47:30,130 INFO : Inserting HPRR350074
23 May 2023 18:47:30,137 INFO : 10% Done
23 May 2023 18:47:30,616 DEBUG: Total peptides inserted: 3
23 May 2023 18:47:30,617 INFO : Inserting HPRR350094
23 May 2023 18:47:30,624 INFO : 11% Done
23 May 2023 18:47:30,923 INFO : 12% Done
23 May 2023 18:47:31,064 DEBUG: Total peptides inserted: 3
23 May 2023 18:47:31,064 INFO : Inserting HPRR350140
23 May 2023 18:47:31,360 INFO : 13% Done
23 May 2023 18:47:31,473 DEBUG: Total peptides inserted: 3
23 May 2023 18:47:31,473 INFO : Inserting HPRR350145
23 May 2023 18:47:31,746 INFO : 14% Done
23 May 2023 18:47:31,883 DEBUG: Total peptides inserted: 3
23 May 2023 18:47:31,884 INFO : Inserting HPRR2050095
23 May 2023 18:47:32,018 INFO : 15% Done
23 May 2023 18:47:32,229 DEBUG: Total peptides inserted: 3
23 May 2023 18:47:32,229 INFO : Inserting HPRR2320064
23 May 2023 18:47:32,357 DEBUG: Total peptides inserted: 1
23 May 2023 18:47:32,357 INFO : Inserting HPRR3440141
23 May 2023 18:47:32,364 INFO : 16% Done
23 May 2023 18:47:32,608 DEBUG: Total peptides inserted: 2
23 May 2023 18:47:32,608 INFO : Inserting HPRR3450266
23 May 2023 18:47:32,616 INFO : 17% Done
23 May 2023 18:47:33,002 DEBUG: Total peptides inserted: 3
23 May 2023 18:47:33,002 INFO : Inserting HPRR4030673
23 May 2023 18:47:33,010 INFO : 18% Done
23 May 2023 18:47:33,392 DEBUG: Total peptides inserted: 3
23 May 2023 18:47:33,392 INFO : Inserting HPRR4200150
23 May 2023 18:47:33,399 INFO : 19% Done
23 May 2023 18:47:33,626 DEBUG: Total peptides inserted: 2
23 May 2023 18:47:33,626 INFO : Inserting HPRR4430020
23 May 2023 18:47:33,634 INFO : 20% Done
23 May 2023 18:47:33,902 DEBUG: Total peptides inserted: 2
23 May 2023 18:47:33,902 INFO : Inserting HPRR5000007
23 May 2023 18:47:34,038 INFO : 21% Done
23 May 2023 18:47:34,289 DEBUG: Total peptides inserted: 3
23 May 2023 18:47:34,290 INFO : Inserting HPRR5000011
23 May 2023 18:47:34,297 INFO : 22% Done
23 May 2023 18:47:34,546 DEBUG: Total peptides inserted: 2
23 May 2023 18:47:34,546 INFO : Inserting HPRR5000013
23 May 2023 18:47:34,690 INFO : 23% Done
23 May 2023 18:47:34,944 DEBUG: Total peptides inserted: 3
23 May 2023 18:47:34,944 INFO : Inserting HPRR5000096
23 May 2023 18:47:34,951 INFO : 24% Done
23 May 2023 18:47:35,331 DEBUG: Total peptides inserted: 3
23 May 2023 18:47:35,331 INFO : Inserting HPRR280083
23 May 2023 18:47:35,339 INFO : 25% Done
23 May 2023 18:47:35,596 DEBUG: Total peptides inserted: 2
23 May 2023 18:47:35,596 INFO : Inserting HPRR280110
23 May 2023 18:47:35,885 DEBUG: Total peptides inserted: 2
23 May 2023 18:47:35,885 INFO : Inserting HPRR350017
23 May 2023 18:47:36,072 INFO : 26% Done
23 May 2023 18:47:36,200 DEBUG: Total peptides inserted: 2
23 May 2023 18:47:36,201 INFO : Inserting HPRR350052
23 May 2023 18:47:36,507 INFO : 27% Done
23 May 2023 18:47:36,642 DEBUG: Total peptides inserted: 3
23 May 2023 18:47:36,642 INFO : Inserting HPRR350060
23 May 2023 18:47:36,789 INFO : 28% Done
23 May 2023 18:47:37,045 DEBUG: Total peptides inserted: 3
23 May 2023 18:47:37,045 INFO : Inserting HPRR350062
23 May 2023 18:47:37,185 INFO : 29% Done
23 May 2023 18:47:37,313 DEBUG: Total peptides inserted: 2
23 May 2023 18:47:37,313 INFO : Inserting HPRR670086
23 May 2023 18:47:37,452 INFO : 30% Done
23 May 2023 18:47:37,586 DEBUG: Total peptides inserted: 2
23 May 2023 18:47:37,586 INFO : Inserting HPRR2550052
23 May 2023 18:47:37,813 INFO : 31% Done
23 May 2023 18:47:37,939 DEBUG: Total peptides inserted: 3
23 May 2023 18:47:37,939 INFO : Inserting HPRR2550723
23 May 2023 18:47:38,076 DEBUG: Total peptides inserted: 1
23 May 2023 18:47:38,076 INFO : Inserting HPRR3140086
23 May 2023 18:47:38,219 INFO : 32% Done
23 May 2023 18:47:38,486 DEBUG: Total peptides inserted: 3
23 May 2023 18:47:38,486 INFO : Inserting HPRR3340379
23 May 2023 18:47:38,494 INFO : 33% Done
23 May 2023 18:47:38,922 INFO : 34% Done
23 May 2023 18:47:39,062 DEBUG: Total peptides inserted: 4
23 May 2023 18:47:39,062 INFO : Inserting HPRR3720238
23 May 2023 18:47:39,199 INFO : 35% Done
23 May 2023 18:47:39,453 DEBUG: Total peptides inserted: 3
23 May 2023 18:47:39,453 INFO : Inserting HPRR3720311
23 May 2023 18:47:39,598 INFO : 36% Done
23 May 2023 18:47:39,745 DEBUG: Total peptides inserted: 2
23 May 2023 18:47:39,745 INFO : Inserting HPRR3760404
23 May 2023 18:47:39,918 INFO : 37% Done
23 May 2023 18:47:40,309 DEBUG: Total peptides inserted: 4
23 May 2023 18:47:40,309 INFO : Inserting HPRR3920037
23 May 2023 18:47:40,317 INFO : 38% Done
23 May 2023 18:47:40,597 DEBUG: Total peptides inserted: 2
23 May 2023 18:47:40,597 INFO : Inserting HPRR3920348
23 May 2023 18:47:40,604 INFO : 39% Done
23 May 2023 18:47:40,768 DEBUG: Total peptides inserted: 1
23 May 2023 18:47:40,768 INFO : Inserting HPRR4200068
23 May 2023 18:47:41,096 DEBUG: Total peptides inserted: 2
23 May 2023 18:47:41,096 INFO : Inserting HPRR5000006
23 May 2023 18:47:41,103 INFO : 40% Done
23 May 2023 18:47:41,263 DEBUG: Total peptides inserted: 1
23 May 2023 18:47:41,263 INFO : Inserting HPRR5000023
23 May 2023 18:47:41,430 DEBUG: Total peptides inserted: 1
23 May 2023 18:47:41,431 INFO : Inserting HPRR5000055
23 May 2023 18:47:41,439 INFO : 41% Done
23 May 2023 18:47:41,904 DEBUG: Total peptides inserted: 3
23 May 2023 18:47:41,904 INFO : Inserting HPRR5000060
23 May 2023 18:47:41,911 INFO : 42% Done
23 May 2023 18:47:42,168 DEBUG: Total peptides inserted: 2
23 May 2023 18:47:42,168 INFO : Inserting HPRR5000063
23 May 2023 18:47:42,176 INFO : 43% Done
23 May 2023 18:47:42,478 DEBUG: Total peptides inserted: 2
23 May 2023 18:47:42,478 INFO : Inserting HPRR5000601
23 May 2023 18:47:42,632 INFO : 44% Done
23 May 2023 18:47:43,033 DEBUG: Total peptides inserted: 4
23 May 2023 18:47:43,033 INFO : Inserting HPRR252445
23 May 2023 18:47:43,041 INFO : 45% Done
23 May 2023 18:47:43,315 INFO : 46% Done
23 May 2023 18:47:43,442 DEBUG: Total peptides inserted: 3
23 May 2023 18:47:43,442 INFO : Inserting HPRR280085
23 May 2023 18:47:43,715 INFO : 47% Done
23 May 2023 18:47:43,838 DEBUG: Total peptides inserted: 3
23 May 2023 18:47:43,838 INFO : Inserting HPRR350029
23 May 2023 18:47:43,970 DEBUG: Total peptides inserted: 1
23 May 2023 18:47:43,970 INFO : Inserting HPRR350078
23 May 2023 18:47:43,977 INFO : 48% Done
23 May 2023 18:47:44,210 DEBUG: Total peptides inserted: 2
23 May 2023 18:47:44,210 INFO : Inserting HPRR350088
23 May 2023 18:47:44,344 INFO : 49% Done
23 May 2023 18:47:44,593 DEBUG: Total peptides inserted: 3
23 May 2023 18:47:44,593 INFO : Inserting HPRR2760280
23 May 2023 18:47:44,601 INFO : 50% Done
23 May 2023 18:47:44,858 DEBUG: Total peptides inserted: 2
23 May 2023 18:47:44,858 INFO : Inserting HPRR3280115
23 May 2023 18:47:45,000 INFO : 51% Done
23 May 2023 18:47:45,125 DEBUG: Total peptides inserted: 2
23 May 2023 18:47:45,125 INFO : Inserting HPRR3500260
23 May 2023 18:47:45,262 INFO : 52% Done
23 May 2023 18:47:45,389 DEBUG: Total peptides inserted: 2
23 May 2023 18:47:45,389 INFO : Inserting HPRR3730089
23 May 2023 18:47:45,633 INFO : 53% Done
23 May 2023 18:47:45,758 DEBUG: Total peptides inserted: 3
23 May 2023 18:47:45,759 INFO : Inserting HPRR4060158
23 May 2023 18:47:45,999 DEBUG: Total peptides inserted: 2
23 May 2023 18:47:45,999 INFO : Inserting HPRR4340066
23 May 2023 18:47:46,007 INFO : 54% Done
23 May 2023 18:47:46,370 INFO : 55% Done
23 May 2023 18:47:46,475 DEBUG: Total peptides inserted: 3
23 May 2023 18:47:46,475 INFO : Inserting HPRR5000010
23 May 2023 18:47:46,611 INFO : 56% Done
23 May 2023 18:47:46,866 DEBUG: Total peptides inserted: 3
23 May 2023 18:47:46,866 INFO : Inserting HPRR5000017
23 May 2023 18:47:46,999 INFO : 57% Done
23 May 2023 18:47:47,125 DEBUG: Total peptides inserted: 2
23 May 2023 18:47:47,125 INFO : Inserting HPRR5000059
23 May 2023 18:47:47,263 INFO : 58% Done
23 May 2023 18:47:47,386 DEBUG: Total peptides inserted: 2
23 May 2023 18:47:47,386 INFO : Inserting HPRR5000343
23 May 2023 18:47:47,645 DEBUG: Total peptides inserted: 2
23 May 2023 18:47:47,645 INFO : Inserting HPRR5000606
23 May 2023 18:47:47,653 INFO : 59% Done
23 May 2023 18:47:48,028 DEBUG: Total peptides inserted: 3
23 May 2023 18:47:48,028 INFO : Inserting HPRR300024
23 May 2023 18:47:48,035 INFO : 60% Done
23 May 2023 18:47:48,157 DEBUG: Total peptides inserted: 1
23 May 2023 18:47:48,157 INFO : Inserting HPRR350069
23 May 2023 18:47:48,293 INFO : 61% Done
23 May 2023 18:47:48,544 DEBUG: Total peptides inserted: 3
23 May 2023 18:47:48,544 INFO : Inserting HPRR350141
23 May 2023 18:47:48,674 INFO : 62% Done
23 May 2023 18:47:48,930 DEBUG: Total peptides inserted: 3
23 May 2023 18:47:48,930 INFO : Inserting HPRR1420079
23 May 2023 18:47:48,938 INFO : 63% Done
23 May 2023 18:47:49,188 DEBUG: Total peptides inserted: 2
23 May 2023 18:47:49,188 INFO : Inserting HPRR1510029
23 May 2023 18:47:49,328 INFO : 64% Done
23 May 2023 18:47:49,581 DEBUG: Total peptides inserted: 3
23 May 2023 18:47:49,581 INFO : Inserting HPRR1920085
23 May 2023 18:47:49,589 INFO : 65% Done
23 May 2023 18:47:49,965 DEBUG: Total peptides inserted: 3
23 May 2023 18:47:49,965 INFO : Inserting HPRR2551163
23 May 2023 18:47:49,973 INFO : 66% Done
23 May 2023 18:47:50,096 DEBUG: Total peptides inserted: 1
23 May 2023 18:47:50,096 INFO : Inserting HPRR2760373
23 May 2023 18:47:50,336 DEBUG: Total peptides inserted: 2
23 May 2023 18:47:50,337 INFO : Inserting HPRR2960663
23 May 2023 18:47:50,344 INFO : 67% Done
23 May 2023 18:47:50,580 INFO : 68% Done
23 May 2023 18:47:50,753 DEBUG: Total peptides inserted: 3
23 May 2023 18:47:50,753 INFO : Inserting HPRR3010712
23 May 2023 18:47:50,894 DEBUG: Total peptides inserted: 1
23 May 2023 18:47:50,894 INFO : Inserting HPRR3700033
23 May 2023 18:47:51,039 INFO : 69% Done
23 May 2023 18:47:51,173 DEBUG: Total peptides inserted: 2
23 May 2023 18:47:51,173 INFO : Inserting HPRR3700121
23 May 2023 18:47:51,312 DEBUG: Total peptides inserted: 1
23 May 2023 18:47:51,312 INFO : Inserting HPRR3730418
23 May 2023 18:47:51,320 INFO : 70% Done
23 May 2023 18:47:51,589 DEBUG: Total peptides inserted: 2
23 May 2023 18:47:51,589 INFO : Inserting HPRR5000001
23 May 2023 18:47:51,735 INFO : 71% Done
23 May 2023 18:47:51,850 DEBUG: Total peptides inserted: 2
23 May 2023 18:47:51,850 INFO : Inserting HPRR5000033
23 May 2023 18:47:52,014 INFO : 72% Done
23 May 2023 18:47:52,167 DEBUG: Total peptides inserted: 2
23 May 2023 18:47:52,167 INFO : Inserting HPRR5000261
23 May 2023 18:47:52,326 DEBUG: Total peptides inserted: 1
23 May 2023 18:47:52,326 INFO : Inserting HPRR5000488
23 May 2023 18:47:52,507 INFO : 73% Done
23 May 2023 18:47:52,811 DEBUG: Total peptides inserted: 3
23 May 2023 18:47:52,811 INFO : Inserting HPRR330212
23 May 2023 18:47:52,820 INFO : 74% Done
23 May 2023 18:47:53,084 DEBUG: Total peptides inserted: 2
23 May 2023 18:47:53,084 INFO : Inserting HPRR350107
23 May 2023 18:47:53,488 DEBUG: Total peptides inserted: 3
23 May 2023 18:47:53,488 INFO : Inserting HPRR350147
23 May 2023 18:47:53,626 DEBUG: Total peptides inserted: 1
23 May 2023 18:47:53,626 INFO : Inserting HPRR400189
23 May 2023 18:47:53,634 INFO : 75% Done
23 May 2023 18:47:53,906 DEBUG: Total peptides inserted: 2
23 May 2023 18:47:53,906 INFO : Inserting HPRR1320007
23 May 2023 18:47:53,913 INFO : 76% Done
23 May 2023 18:47:54,327 DEBUG: Total peptides inserted: 3
23 May 2023 18:47:54,327 INFO : Inserting HPRR2550357
23 May 2023 18:47:54,334 INFO : 77% Done
23 May 2023 18:47:54,607 DEBUG: Total peptides inserted: 2
23 May 2023 18:47:54,607 INFO : Inserting HPRR5000056
23 May 2023 18:47:54,614 INFO : 78% Done
23 May 2023 18:47:54,882 DEBUG: Total peptides inserted: 2
23 May 2023 18:47:54,882 INFO : Inserting HPRR5000085
23 May 2023 18:47:55,031 INFO : 79% Done
23 May 2023 18:47:55,173 DEBUG: Total peptides inserted: 2
23 May 2023 18:47:55,173 INFO : Inserting HPRR5000092
23 May 2023 18:47:55,327 INFO : 80% Done
23 May 2023 18:47:55,474 DEBUG: Total peptides inserted: 2
23 May 2023 18:47:55,475 INFO : Inserting HPRR5000138
23 May 2023 18:47:55,629 DEBUG: Total peptides inserted: 1
23 May 2023 18:47:55,629 INFO : Inserting HPRR5000342
23 May 2023 18:47:55,781 INFO : 81% Done
23 May 2023 18:47:56,068 DEBUG: Total peptides inserted: 3
23 May 2023 18:47:56,068 INFO : Inserting HPRR5000369
23 May 2023 18:47:56,209 DEBUG: Total peptides inserted: 1
23 May 2023 18:47:56,209 INFO : Inserting HPRR5000615
23 May 2023 18:47:56,216 INFO : 82% Done
23 May 2023 18:47:56,484 DEBUG: Total peptides inserted: 2
23 May 2023 18:47:56,484 INFO : Inserting HPRR670248
23 May 2023 18:47:56,492 INFO : 83% Done
23 May 2023 18:47:56,623 DEBUG: Total peptides inserted: 1
23 May 2023 18:47:56,623 INFO : Inserting HPRR2540982
23 May 2023 18:47:56,762 DEBUG: Total peptides inserted: 1
23 May 2023 18:47:56,762 INFO : Inserting HPRR3140768
23 May 2023 18:47:56,906 DEBUG: Total peptides inserted: 1
23 May 2023 18:47:56,906 INFO : Inserting HPRR3230185
23 May 2023 18:47:56,913 INFO : 84% Done
23 May 2023 18:47:57,045 DEBUG: Total peptides inserted: 1
23 May 2023 18:47:57,045 INFO : Inserting HPRR5000098
23 May 2023 18:47:57,183 DEBUG: Total peptides inserted: 1
23 May 2023 18:47:57,183 INFO : Inserting HPRR5000129
23 May 2023 18:47:57,189 INFO : 85% Done
23 May 2023 18:47:57,550 DEBUG: Total peptides inserted: 3
23 May 2023 18:47:57,550 INFO : Inserting HPRR5000224
23 May 2023 18:47:57,557 INFO : 86% Done
23 May 2023 18:47:57,702 DEBUG: Total peptides inserted: 1
23 May 2023 18:47:57,702 INFO : Inserting HPRR5000490
23 May 2023 18:47:57,822 DEBUG: Total peptides inserted: 1
23 May 2023 18:47:57,822 INFO : Imported 100 peptide groups.
23 May 2023 18:47:57,822 INFO : Inserting HPRR5000506
23 May 2023 18:47:57,961 DEBUG: Total peptides inserted: 1
23 May 2023 18:47:57,961 INFO : Inserting HPRR510027
23 May 2023 18:47:57,969 INFO : 87% Done
23 May 2023 18:47:58,105 DEBUG: Total peptides inserted: 1
23 May 2023 18:47:58,105 INFO : Inserting HPRR1420200
23 May 2023 18:47:58,248 DEBUG: Total peptides inserted: 1
23 May 2023 18:47:58,248 INFO : Inserting HPRR2460059
23 May 2023 18:47:58,255 INFO : 88% Done
23 May 2023 18:47:58,394 DEBUG: Total peptides inserted: 1
23 May 2023 18:47:58,394 INFO : Inserting HPRR3140383
23 May 2023 18:47:58,516 DEBUG: Total peptides inserted: 1
23 May 2023 18:47:58,516 INFO : Inserting HPRR5000254
23 May 2023 18:47:58,660 DEBUG: Total peptides inserted: 1
23 May 2023 18:47:58,660 INFO : Inserting HPRR5000268
23 May 2023 18:47:58,667 INFO : 89% Done
23 May 2023 18:47:58,804 DEBUG: Total peptides inserted: 1
23 May 2023 18:47:58,804 INFO : Inserting HPRR5000360
23 May 2023 18:47:58,980 DEBUG: Total peptides inserted: 1
23 May 2023 18:47:58,980 INFO : Inserting HPRR140864
23 May 2023 18:47:58,989 INFO : 90% Done
23 May 2023 18:47:59,240 DEBUG: Total peptides inserted: 2
23 May 2023 18:47:59,240 INFO : Inserting HPRR670137
23 May 2023 18:47:59,355 INFO : 91% Done
23 May 2023 18:47:59,595 DEBUG: Total peptides inserted: 3
23 May 2023 18:47:59,595 INFO : Inserting HPRR670260
23 May 2023 18:47:59,719 DEBUG: Total peptides inserted: 1
23 May 2023 18:47:59,721 INFO : 92% Done
23 May 2023 18:47:59,721 INFO : Inserting HPRR1770044
23 May 2023 18:47:59,983 INFO : 93% Done
23 May 2023 18:48:00,114 DEBUG: Total peptides inserted: 3
23 May 2023 18:48:00,114 INFO : Inserting HPRR1920099
23 May 2023 18:48:00,241 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:00,241 INFO : Inserting HPRR1970042
23 May 2023 18:48:00,368 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:00,368 INFO : Inserting HPRR2100041
23 May 2023 18:48:00,377 INFO : 94% Done
23 May 2023 18:48:00,497 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:00,497 INFO : Inserting HPRR3420003
23 May 2023 18:48:00,624 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:00,624 INFO : Inserting HPRR3730570
23 May 2023 18:48:00,631 INFO : 95% Done
23 May 2023 18:48:00,877 DEBUG: Total peptides inserted: 2
23 May 2023 18:48:00,877 INFO : Inserting HPRR4160204
23 May 2023 18:48:01,007 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:01,007 INFO : Inserting HPRR5000040
23 May 2023 18:48:01,013 INFO : 96% Done
23 May 2023 18:48:01,099 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:01,099 INFO : Inserting HPRR5000061
23 May 2023 18:48:01,225 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:01,225 INFO : Inserting HPRR5000133
23 May 2023 18:48:01,232 INFO : 97% Done
23 May 2023 18:48:01,353 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:01,353 INFO : Inserting HPRR5000273
23 May 2023 18:48:01,586 DEBUG: Total peptides inserted: 2
23 May 2023 18:48:01,586 INFO : Inserting HPRR330186
23 May 2023 18:48:01,594 INFO : 98% Done
23 May 2023 18:48:01,829 DEBUG: Total peptides inserted: 2
23 May 2023 18:48:01,831 INFO : Done parsing Skyline document.
23 May 2023 18:48:01,831 INFO : Calculating iRT correlations for 36 sample(s)
23 May 2023 18:48:01,883 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:48:01,908 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:48:01,933 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:48:01,958 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:48:01,983 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:48:02,008 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:48:02,034 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:48:02,059 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:48:02,084 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:48:02,109 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:48:02,134 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:48:02,159 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:48:02,184 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:48:02,209 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:48:02,234 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:48:02,260 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:48:02,286 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:48:02,311 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:48:02,336 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:48:02,361 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:48:02,386 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:48:02,411 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:48:02,436 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:48:02,461 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:48:02,486 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:48:02,511 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:48:02,536 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:48:02,561 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:48:02,587 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:48:02,612 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:48:02,637 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:48:02,662 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:48:02,687 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:48:02,712 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:48:02,737 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:48:02,762 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:48:02,762 INFO : Finished calculating iRT correlations for all samples
23 May 2023 18:48:09,184 INFO : Creating and populating temp tables for Proportion values
23 May 2023 18:48:09,383 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
23 May 2023 18:48:10,127 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
23 May 2023 18:48:10,392 INFO : Cleaning up temp tables
23 May 2023 18:48:10,721 INFO : Completed import of Skyline document from Trypsin_Comparison_Standard_Curves_2023-01-15_12-00-52.sky.zip
23 May 2023 18:48:10,723 INFO : 100% Done
23 May 2023 18:48:10,727 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20Trypsin%20Comparison_6986b671-dbfe-103b-965b-fea6ddf56188/_temp__2023-05-23_18-16-53/export/xar/experiments_and_runs.xar.exploded/Run148642/Trypsin_Comparison_Standard_Curves_2023-01-15_12-00-52.sky.zip into the system
23 May 2023 18:48:10,727 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20Trypsin%20Comparison_6986b671-dbfe-103b-965b-fea6ddf56188/_temp__2023-05-23_18-16-53/export/xar/experiments_and_runs.xar.exploded/Run148784/Trypsin_Comparison_2023-01-17_13-30-03/Trypsin_Comparison.skyd into the system
23 May 2023 18:48:10,728 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20Trypsin%20Comparison_6986b671-dbfe-103b-965b-fea6ddf56188/_temp__2023-05-23_18-16-53/export/xar/experiments_and_runs.xar.exploded/Run148784/Trypsin_Comparison_2023-01-17_13-30-03/Trypsin_Comparison.skyd into the system
23 May 2023 18:48:10,728 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20Trypsin%20Comparison_6986b671-dbfe-103b-965b-fea6ddf56188/_temp__2023-05-23_18-16-53/export/xar/experiments_and_runs.xar.exploded/Run148784/Trypsin_Comparison_2023-01-17_13-30-03.sky.zip into the system
23 May 2023 18:48:10,729 INFO : Starting import from Trypsin_Comparison_2023-01-17_13-30-03.sky.zip
23 May 2023 18:48:10,731 INFO : Starting to import Skyline document from Trypsin_Comparison_2023-01-17_13-30-03.sky.zip
23 May 2023 18:48:10,748 INFO : Expanding 220628_Uniprot_HumanProteome_UP000005640.protdb
23 May 2023 18:48:12,910 INFO : Expanding irt_library_qtag_20190703.irtdb
23 May 2023 18:48:12,913 INFO : Expanding DA_CE_library.optdb
23 May 2023 18:48:12,944 INFO : Expanding SRM_Assay_Library_133Prot_295Pep_rev3.clib
23 May 2023 18:48:12,952 INFO : Expanding Trypsin_Comparison.skyd
23 May 2023 18:48:13,483 INFO : Expanding Trypsin_Comparison.sky.view
23 May 2023 18:48:13,483 INFO : Expanding Trypsin_Comparison.sky
23 May 2023 18:48:13,602 INFO : Expanding Trypsin_Comparison.skyl
23 May 2023 18:48:15,005 DEBUG: Starting to load chromatogram headers
23 May 2023 18:48:15,075 DEBUG: Done loading chromatogram headers
23 May 2023 18:48:16,132 INFO : Inserting QTag
23 May 2023 18:48:16,139 INFO : 1% Done
23 May 2023 18:48:16,533 INFO : 2% Done
23 May 2023 18:48:16,679 DEBUG: Total peptides inserted: 7
23 May 2023 18:48:16,679 INFO : Inserting HPRR140840
23 May 2023 18:48:16,882 INFO : 3% Done
23 May 2023 18:48:17,295 DEBUG: Total peptides inserted: 3
23 May 2023 18:48:17,296 INFO : Inserting HPRR280081
23 May 2023 18:48:17,308 INFO : 4% Done
23 May 2023 18:48:17,828 DEBUG: Total peptides inserted: 3
23 May 2023 18:48:17,828 INFO : Inserting HPRR280090
23 May 2023 18:48:17,840 INFO : 5% Done
23 May 2023 18:48:18,012 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:18,012 INFO : Inserting HPRR280106
23 May 2023 18:48:18,196 INFO : 6% Done
23 May 2023 18:48:18,712 DEBUG: Total peptides inserted: 4
23 May 2023 18:48:18,712 INFO : Inserting HPRR320015
23 May 2023 18:48:18,725 INFO : 7% Done
23 May 2023 18:48:19,076 INFO : 8% Done
23 May 2023 18:48:19,246 DEBUG: Total peptides inserted: 3
23 May 2023 18:48:19,246 INFO : Inserting HPRR320021
23 May 2023 18:48:19,434 INFO : 9% Done
23 May 2023 18:48:19,960 INFO : 10% Done
23 May 2023 18:48:20,124 DEBUG: Total peptides inserted: 5
23 May 2023 18:48:20,124 INFO : Inserting HPRR350027
23 May 2023 18:48:20,304 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:20,304 INFO : Inserting HPRR350074
23 May 2023 18:48:20,316 INFO : 11% Done
23 May 2023 18:48:20,833 DEBUG: Total peptides inserted: 3
23 May 2023 18:48:20,833 INFO : Inserting HPRR350094
23 May 2023 18:48:20,844 INFO : 12% Done
23 May 2023 18:48:21,201 INFO : 13% Done
23 May 2023 18:48:21,368 DEBUG: Total peptides inserted: 3
23 May 2023 18:48:21,368 INFO : Inserting HPRR350140
23 May 2023 18:48:21,729 INFO : 14% Done
23 May 2023 18:48:21,897 DEBUG: Total peptides inserted: 3
23 May 2023 18:48:21,897 INFO : Inserting HPRR350145
23 May 2023 18:48:22,086 INFO : 15% Done
23 May 2023 18:48:22,430 DEBUG: Total peptides inserted: 3
23 May 2023 18:48:22,430 INFO : Inserting HPRR2050095
23 May 2023 18:48:22,443 INFO : 16% Done
23 May 2023 18:48:23,007 DEBUG: Total peptides inserted: 3
23 May 2023 18:48:23,007 INFO : Inserting HPRR2320064
23 May 2023 18:48:23,022 INFO : 17% Done
23 May 2023 18:48:23,193 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:23,194 INFO : Inserting HPRR3440141
23 May 2023 18:48:23,381 INFO : 18% Done
23 May 2023 18:48:23,547 DEBUG: Total peptides inserted: 2
23 May 2023 18:48:23,547 INFO : Inserting HPRR3450266
23 May 2023 18:48:23,912 INFO : 19% Done
23 May 2023 18:48:24,083 DEBUG: Total peptides inserted: 3
23 May 2023 18:48:24,083 INFO : Inserting HPRR4030673
23 May 2023 18:48:24,268 INFO : 20% Done
23 May 2023 18:48:24,603 DEBUG: Total peptides inserted: 3
23 May 2023 18:48:24,603 INFO : Inserting HPRR4200150
23 May 2023 18:48:24,777 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:24,777 INFO : Inserting HPRR4430020
23 May 2023 18:48:24,788 INFO : 21% Done
23 May 2023 18:48:25,126 DEBUG: Total peptides inserted: 2
23 May 2023 18:48:25,126 INFO : Inserting HPRR5000007
23 May 2023 18:48:25,141 INFO : 22% Done
23 May 2023 18:48:25,520 INFO : 23% Done
23 May 2023 18:48:25,704 DEBUG: Total peptides inserted: 3
23 May 2023 18:48:25,704 INFO : Inserting HPRR5000011
23 May 2023 18:48:25,897 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:25,897 INFO : Inserting HPRR5000013
23 May 2023 18:48:26,105 INFO : 24% Done
23 May 2023 18:48:26,482 DEBUG: Total peptides inserted: 3
23 May 2023 18:48:26,482 INFO : Inserting HPRR5000096
23 May 2023 18:48:26,496 INFO : 25% Done
23 May 2023 18:48:27,025 DEBUG: Total peptides inserted: 3
23 May 2023 18:48:27,025 INFO : Inserting HPRR280083
23 May 2023 18:48:27,373 DEBUG: Total peptides inserted: 2
23 May 2023 18:48:27,373 INFO : Inserting HPRR280110
23 May 2023 18:48:27,385 INFO : 26% Done
23 May 2023 18:48:27,727 DEBUG: Total peptides inserted: 2
23 May 2023 18:48:27,727 INFO : Inserting HPRR350017
23 May 2023 18:48:27,917 INFO : 27% Done
23 May 2023 18:48:28,080 DEBUG: Total peptides inserted: 2
23 May 2023 18:48:28,081 INFO : Inserting HPRR350052
23 May 2023 18:48:28,273 INFO : 28% Done
23 May 2023 18:48:28,626 DEBUG: Total peptides inserted: 3
23 May 2023 18:48:28,626 INFO : Inserting HPRR350060
23 May 2023 18:48:28,868 INFO : 29% Done
23 May 2023 18:48:29,238 DEBUG: Total peptides inserted: 3
23 May 2023 18:48:29,238 INFO : Inserting HPRR350062
23 May 2023 18:48:29,253 INFO : 30% Done
23 May 2023 18:48:29,618 DEBUG: Total peptides inserted: 2
23 May 2023 18:48:29,619 INFO : Inserting HPRR670086
23 May 2023 18:48:29,632 INFO : 31% Done
23 May 2023 18:48:29,992 DEBUG: Total peptides inserted: 2
23 May 2023 18:48:29,992 INFO : Inserting HPRR2550052
23 May 2023 18:48:30,184 INFO : 32% Done
23 May 2023 18:48:30,542 DEBUG: Total peptides inserted: 3
23 May 2023 18:48:30,542 INFO : Inserting HPRR2550723
23 May 2023 18:48:30,553 INFO : 33% Done
23 May 2023 18:48:30,728 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:30,728 INFO : Inserting HPRR3140086
23 May 2023 18:48:31,108 INFO : 34% Done
23 May 2023 18:48:31,280 DEBUG: Total peptides inserted: 3
23 May 2023 18:48:31,280 INFO : Inserting HPRR3340379
23 May 2023 18:48:31,475 INFO : 35% Done
23 May 2023 18:48:32,012 DEBUG: Total peptides inserted: 4
23 May 2023 18:48:32,012 INFO : Inserting HPRR3720238
23 May 2023 18:48:32,024 INFO : 36% Done
23 May 2023 18:48:32,392 INFO : 37% Done
23 May 2023 18:48:32,568 DEBUG: Total peptides inserted: 3
23 May 2023 18:48:32,568 INFO : Inserting HPRR3720311
23 May 2023 18:48:32,762 INFO : 38% Done
23 May 2023 18:48:32,935 DEBUG: Total peptides inserted: 2
23 May 2023 18:48:32,935 INFO : Inserting HPRR3760404
23 May 2023 18:48:33,311 INFO : 39% Done
23 May 2023 18:48:33,670 DEBUG: Total peptides inserted: 4
23 May 2023 18:48:33,670 INFO : Inserting HPRR3920037
23 May 2023 18:48:33,682 INFO : 40% Done
23 May 2023 18:48:34,040 DEBUG: Total peptides inserted: 2
23 May 2023 18:48:34,041 INFO : Inserting HPRR3920348
23 May 2023 18:48:34,225 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:34,225 INFO : Inserting HPRR4200068
23 May 2023 18:48:34,239 INFO : 41% Done
23 May 2023 18:48:34,594 DEBUG: Total peptides inserted: 2
23 May 2023 18:48:34,594 INFO : Inserting HPRR5000006
23 May 2023 18:48:34,606 INFO : 42% Done
23 May 2023 18:48:34,822 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:34,822 INFO : Inserting HPRR5000023
23 May 2023 18:48:35,008 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:35,009 INFO : Inserting HPRR5000055
23 May 2023 18:48:35,201 INFO : 43% Done
23 May 2023 18:48:35,555 DEBUG: Total peptides inserted: 3
23 May 2023 18:48:35,555 INFO : Inserting HPRR5000060
23 May 2023 18:48:35,569 INFO : 44% Done
23 May 2023 18:48:35,914 DEBUG: Total peptides inserted: 2
23 May 2023 18:48:35,914 INFO : Inserting HPRR5000063
23 May 2023 18:48:35,927 INFO : 45% Done
23 May 2023 18:48:36,269 DEBUG: Total peptides inserted: 2
23 May 2023 18:48:36,269 INFO : Inserting HPRR5000601
23 May 2023 18:48:36,456 INFO : 46% Done
23 May 2023 18:48:36,850 INFO : 47% Done
23 May 2023 18:48:37,037 DEBUG: Total peptides inserted: 4
23 May 2023 18:48:37,037 INFO : Inserting HPRR252445
23 May 2023 18:48:37,440 INFO : 48% Done
23 May 2023 18:48:37,626 DEBUG: Total peptides inserted: 3
23 May 2023 18:48:37,626 INFO : Inserting HPRR280085
23 May 2023 18:48:37,821 INFO : 49% Done
23 May 2023 18:48:38,170 DEBUG: Total peptides inserted: 3
23 May 2023 18:48:38,170 INFO : Inserting HPRR350029
23 May 2023 18:48:38,350 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:38,350 INFO : Inserting HPRR350078
23 May 2023 18:48:38,361 INFO : 50% Done
23 May 2023 18:48:38,703 DEBUG: Total peptides inserted: 2
23 May 2023 18:48:38,703 INFO : Inserting HPRR350088
23 May 2023 18:48:38,716 INFO : 51% Done
23 May 2023 18:48:39,072 INFO : 52% Done
23 May 2023 18:48:39,239 DEBUG: Total peptides inserted: 3
23 May 2023 18:48:39,239 INFO : Inserting HPRR2760280
23 May 2023 18:48:39,591 DEBUG: Total peptides inserted: 2
23 May 2023 18:48:39,591 INFO : Inserting HPRR3280115
23 May 2023 18:48:39,602 INFO : 53% Done
23 May 2023 18:48:39,951 DEBUG: Total peptides inserted: 2
23 May 2023 18:48:39,951 INFO : Inserting HPRR3500260
23 May 2023 18:48:39,963 INFO : 54% Done
23 May 2023 18:48:40,307 DEBUG: Total peptides inserted: 2
23 May 2023 18:48:40,307 INFO : Inserting HPRR3730089
23 May 2023 18:48:40,503 INFO : 55% Done
23 May 2023 18:48:40,897 DEBUG: Total peptides inserted: 3
23 May 2023 18:48:40,897 INFO : Inserting HPRR4060158
23 May 2023 18:48:40,911 INFO : 56% Done
23 May 2023 18:48:41,276 DEBUG: Total peptides inserted: 2
23 May 2023 18:48:41,276 INFO : Inserting HPRR4340066
23 May 2023 18:48:41,481 INFO : 57% Done
23 May 2023 18:48:41,847 DEBUG: Total peptides inserted: 3
23 May 2023 18:48:41,847 INFO : Inserting HPRR5000010
23 May 2023 18:48:41,859 INFO : 58% Done
23 May 2023 18:48:42,227 INFO : 59% Done
23 May 2023 18:48:42,400 DEBUG: Total peptides inserted: 3
23 May 2023 18:48:42,400 INFO : Inserting HPRR5000017
23 May 2023 18:48:42,771 DEBUG: Total peptides inserted: 2
23 May 2023 18:48:42,771 INFO : Inserting HPRR5000059
23 May 2023 18:48:42,783 INFO : 60% Done
23 May 2023 18:48:43,146 DEBUG: Total peptides inserted: 2
23 May 2023 18:48:43,146 INFO : Inserting HPRR5000343
23 May 2023 18:48:43,158 INFO : 61% Done
23 May 2023 18:48:43,520 DEBUG: Total peptides inserted: 2
23 May 2023 18:48:43,520 INFO : Inserting HPRR5000606
23 May 2023 18:48:43,714 INFO : 62% Done
23 May 2023 18:48:44,073 DEBUG: Total peptides inserted: 3
23 May 2023 18:48:44,073 INFO : Inserting HPRR300024
23 May 2023 18:48:44,086 INFO : 63% Done
23 May 2023 18:48:44,259 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:44,259 INFO : Inserting HPRR350069
23 May 2023 18:48:44,642 INFO : 64% Done
23 May 2023 18:48:44,816 DEBUG: Total peptides inserted: 3
23 May 2023 18:48:44,816 INFO : Inserting HPRR350141
23 May 2023 18:48:45,010 INFO : 65% Done
23 May 2023 18:48:45,366 DEBUG: Total peptides inserted: 3
23 May 2023 18:48:45,366 INFO : Inserting HPRR1420079
23 May 2023 18:48:45,565 INFO : 66% Done
23 May 2023 18:48:45,740 DEBUG: Total peptides inserted: 2
23 May 2023 18:48:45,740 INFO : Inserting HPRR1510029
23 May 2023 18:48:45,937 INFO : 67% Done
23 May 2023 18:48:46,294 DEBUG: Total peptides inserted: 3
23 May 2023 18:48:46,294 INFO : Inserting HPRR1920085
23 May 2023 18:48:46,306 INFO : 68% Done
23 May 2023 18:48:46,844 DEBUG: Total peptides inserted: 3
23 May 2023 18:48:46,844 INFO : Inserting HPRR2551163
23 May 2023 18:48:46,857 INFO : 69% Done
23 May 2023 18:48:47,072 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:47,072 INFO : Inserting HPRR2760373
23 May 2023 18:48:47,267 INFO : 70% Done
23 May 2023 18:48:47,436 DEBUG: Total peptides inserted: 2
23 May 2023 18:48:47,436 INFO : Inserting HPRR2960663
23 May 2023 18:48:47,827 INFO : 71% Done
23 May 2023 18:48:48,016 DEBUG: Total peptides inserted: 3
23 May 2023 18:48:48,016 INFO : Inserting HPRR3700033
23 May 2023 18:48:48,226 INFO : 72% Done
23 May 2023 18:48:48,414 DEBUG: Total peptides inserted: 2
23 May 2023 18:48:48,414 INFO : Inserting HPRR3700121
23 May 2023 18:48:48,610 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:48,611 INFO : Inserting HPRR3730418
23 May 2023 18:48:48,815 INFO : 73% Done
23 May 2023 18:48:48,982 DEBUG: Total peptides inserted: 2
23 May 2023 18:48:48,982 INFO : Inserting HPRR5000001
23 May 2023 18:48:49,169 INFO : 74% Done
23 May 2023 18:48:49,335 DEBUG: Total peptides inserted: 2
23 May 2023 18:48:49,335 INFO : Inserting HPRR5000033
23 May 2023 18:48:49,688 DEBUG: Total peptides inserted: 2
23 May 2023 18:48:49,688 INFO : Inserting HPRR5000261
23 May 2023 18:48:49,867 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:49,867 INFO : Inserting HPRR5000488
23 May 2023 18:48:50,054 INFO : 75% Done
23 May 2023 18:48:50,402 DEBUG: Total peptides inserted: 3
23 May 2023 18:48:50,402 INFO : Inserting HPRR330212
23 May 2023 18:48:50,589 INFO : 76% Done
23 May 2023 18:48:50,754 DEBUG: Total peptides inserted: 2
23 May 2023 18:48:50,754 INFO : Inserting HPRR350107
23 May 2023 18:48:50,941 INFO : 77% Done
23 May 2023 18:48:51,109 DEBUG: Total peptides inserted: 2
23 May 2023 18:48:51,109 INFO : Inserting HPRR350147
23 May 2023 18:48:51,288 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:51,288 INFO : Inserting HPRR400189
23 May 2023 18:48:51,300 INFO : 78% Done
23 May 2023 18:48:51,646 DEBUG: Total peptides inserted: 2
23 May 2023 18:48:51,646 INFO : Inserting HPRR1320007
23 May 2023 18:48:51,831 INFO : 79% Done
23 May 2023 18:48:52,000 DEBUG: Total peptides inserted: 2
23 May 2023 18:48:52,000 INFO : Inserting HPRR2550357
23 May 2023 18:48:52,188 INFO : 80% Done
23 May 2023 18:48:52,355 DEBUG: Total peptides inserted: 2
23 May 2023 18:48:52,355 INFO : Inserting HPRR5000056
23 May 2023 18:48:52,722 DEBUG: Total peptides inserted: 2
23 May 2023 18:48:52,722 INFO : Inserting HPRR5000085
23 May 2023 18:48:52,735 INFO : 81% Done
23 May 2023 18:48:53,126 DEBUG: Total peptides inserted: 2
23 May 2023 18:48:53,126 INFO : Inserting HPRR5000092
23 May 2023 18:48:53,141 INFO : 82% Done
23 May 2023 18:48:53,507 DEBUG: Total peptides inserted: 2
23 May 2023 18:48:53,507 INFO : Inserting HPRR5000138
23 May 2023 18:48:53,690 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:53,691 INFO : Inserting HPRR5000342
23 May 2023 18:48:53,705 INFO : 83% Done
23 May 2023 18:48:54,065 DEBUG: Total peptides inserted: 2
23 May 2023 18:48:54,065 INFO : Inserting HPRR5000615
23 May 2023 18:48:54,077 INFO : 84% Done
23 May 2023 18:48:54,250 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:54,251 INFO : Inserting HPRR670248
23 May 2023 18:48:54,434 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:54,434 INFO : Inserting HPRR3140768
23 May 2023 18:48:54,445 INFO : 85% Done
23 May 2023 18:48:54,618 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:54,618 INFO : Inserting HPRR3230185
23 May 2023 18:48:54,804 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:54,804 INFO : Inserting HPRR5000098
23 May 2023 18:48:54,986 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:54,986 INFO : Inserting HPRR5000129
23 May 2023 18:48:54,996 INFO : 86% Done
23 May 2023 18:48:55,366 INFO : 87% Done
23 May 2023 18:48:55,540 DEBUG: Total peptides inserted: 3
23 May 2023 18:48:55,540 INFO : Inserting HPRR5000224
23 May 2023 18:48:55,722 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:55,722 INFO : Inserting HPRR5000490
23 May 2023 18:48:55,906 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:55,906 INFO : Inserting HPRR5000506
23 May 2023 18:48:55,920 INFO : 88% Done
23 May 2023 18:48:56,094 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:56,094 INFO : Inserting HPRR510027
23 May 2023 18:48:56,280 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:56,280 INFO : Inserting HPRR1420200
23 May 2023 18:48:56,292 INFO : 89% Done
23 May 2023 18:48:56,468 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:56,468 INFO : Imported 100 peptide groups.
23 May 2023 18:48:56,468 INFO : Inserting HPRR3140383
23 May 2023 18:48:56,651 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:56,651 INFO : Inserting HPRR5000254
23 May 2023 18:48:56,833 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:56,833 INFO : Inserting HPRR5000268
23 May 2023 18:48:56,844 INFO : 90% Done
23 May 2023 18:48:57,021 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:57,021 INFO : Inserting HPRR140864
23 May 2023 18:48:57,214 INFO : 91% Done
23 May 2023 18:48:57,386 DEBUG: Total peptides inserted: 2
23 May 2023 18:48:57,386 INFO : Inserting HPRR670137
23 May 2023 18:48:57,749 DEBUG: Total peptides inserted: 2
23 May 2023 18:48:57,749 INFO : Inserting HPRR670260
23 May 2023 18:48:57,761 INFO : 92% Done
23 May 2023 18:48:57,937 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:57,937 INFO : Inserting HPRR1770044
23 May 2023 18:48:58,134 INFO : 93% Done
23 May 2023 18:48:58,486 DEBUG: Total peptides inserted: 3
23 May 2023 18:48:58,487 INFO : Inserting HPRR1920099
23 May 2023 18:48:58,499 INFO : 94% Done
23 May 2023 18:48:58,674 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:58,674 INFO : Inserting HPRR1970042
23 May 2023 18:48:58,858 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:58,858 INFO : Inserting HPRR2100041
23 May 2023 18:48:59,056 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:59,056 INFO : Inserting HPRR3420003
23 May 2023 18:48:59,069 INFO : 95% Done
23 May 2023 18:48:59,305 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:59,305 INFO : Inserting HPRR3730570
23 May 2023 18:48:59,519 INFO : 96% Done
23 May 2023 18:48:59,705 DEBUG: Total peptides inserted: 2
23 May 2023 18:48:59,705 INFO : Inserting HPRR4160204
23 May 2023 18:48:59,903 DEBUG: Total peptides inserted: 1
23 May 2023 18:48:59,903 INFO : Inserting HPRR5000040
23 May 2023 18:49:00,100 DEBUG: Total peptides inserted: 1
23 May 2023 18:49:00,100 INFO : Inserting HPRR5000061
23 May 2023 18:49:00,114 INFO : 97% Done
23 May 2023 18:49:00,280 DEBUG: Total peptides inserted: 1
23 May 2023 18:49:00,280 INFO : Inserting HPRR5000133
23 May 2023 18:49:00,461 DEBUG: Total peptides inserted: 1
23 May 2023 18:49:00,461 INFO : Inserting HPRR5000273
23 May 2023 18:49:00,473 INFO : 98% Done
23 May 2023 18:49:00,816 DEBUG: Total peptides inserted: 2
23 May 2023 18:49:00,818 INFO : Done parsing Skyline document.
23 May 2023 18:49:00,818 INFO : Calculating iRT correlations for 91 sample(s)
23 May 2023 18:49:00,871 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:00,898 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:00,924 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:00,952 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:00,978 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:01,005 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:01,031 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:01,057 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:01,084 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:01,110 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:01,136 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:01,163 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:01,189 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:01,215 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:01,241 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:01,268 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:01,294 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:01,321 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:01,347 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:01,373 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:01,400 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:01,426 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:01,452 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:01,479 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:01,505 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:01,531 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:01,558 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:01,584 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:01,610 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:01,636 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:01,663 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:01,689 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:01,715 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:01,741 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:01,768 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:01,794 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:01,820 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:01,846 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:01,873 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:01,899 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:01,926 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:01,953 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:01,979 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:02,005 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:02,032 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:02,058 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:02,085 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:02,111 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:02,137 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:02,164 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:02,190 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:02,216 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:02,243 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:02,269 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:02,295 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:02,321 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:02,348 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:02,374 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:02,401 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:02,427 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:02,453 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:02,479 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:02,506 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:02,532 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:02,558 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:02,585 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:02,611 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:02,637 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:02,663 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:02,689 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:02,715 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:02,742 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:02,768 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:02,794 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:02,821 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:02,847 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:02,873 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:02,900 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:02,927 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:02,954 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:02,980 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:03,007 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:03,033 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:03,059 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:03,085 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:03,112 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:03,138 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:03,165 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:03,192 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:03,218 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:03,244 INFO : Calculated iRT regression line from full standard list.
23 May 2023 18:49:03,244 INFO : Finished calculating iRT correlations for all samples
23 May 2023 18:49:12,948 INFO : Creating and populating temp tables for Proportion values
23 May 2023 18:49:13,354 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
23 May 2023 18:49:15,170 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
23 May 2023 18:49:15,800 INFO : Cleaning up temp tables
23 May 2023 18:49:16,089 INFO : Completed import of Skyline document from Trypsin_Comparison_2023-01-17_13-30-03.sky.zip
23 May 2023 18:49:16,091 INFO : 100% Done
23 May 2023 18:49:16,095 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20Trypsin%20Comparison_6986b671-dbfe-103b-965b-fea6ddf56188/_temp__2023-05-23_18-16-53/export/xar/experiments_and_runs.xar.exploded/Run148784/Trypsin_Comparison_2023-01-17_13-30-03.sky.zip into the system
23 May 2023 18:49:16,104 INFO : Done importing xar
23 May 2023 18:49:16,105 INFO : Loading pages and webpart properties
23 May 2023 18:49:16,176 INFO : Done importing 4 page(s) with 7 webpart(s)
23 May 2023 18:49:16,176 INFO : Loading File Browser config
23 May 2023 18:49:16,176 INFO : Done importing File Browser config
23 May 2023 18:49:16,177 INFO : Starting Sample Status Data import
23 May 2023 18:49:16,177 INFO : No sample types XAR file to process.
23 May 2023 18:49:16,177 INFO : Finished importing Sample Status Data
23 May 2023 18:49:16,181 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
23 May 2023 18:49:16,183 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
23 May 2023 18:49:16,183 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
23 May 2023 18:49:16,184 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
23 May 2023 18:49:16,184 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
23 May 2023 18:49:16,184 INFO : Importing files metadata.
23 May 2023 18:49:16,184 DEBUG: [/Panorama Public/2023/KTH Uhlen Lab - Trypsin Comparison] Reading files metadata from /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH Uhlen Lab - Trypsin Comparison_6986b671-dbfe-103b-965b-fea6ddf56188/_temp__2023-05-23_18-16-53/export
23 May 2023 18:49:16,184 INFO :
23 May 2023 18:49:16,185 INFO : Experiment import completed successfully.
23 May 2023 18:49:16,185 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
23 May 2023 18:49:16,203 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
23 May 2023 18:49:16,203 INFO :
23 May 2023 18:49:16,203 INFO : Checking for library folders.
23 May 2023 18:49:16,205 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
23 May 2023 18:49:16,221 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
23 May 2023 18:49:16,221 INFO :
23 May 2023 18:49:16,221 INFO : Finishing up experiment copy.
23 May 2023 18:49:16,223 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
23 May 2023 18:49:16,223 INFO : Setting version on new experiment to 1
23 May 2023 18:49:16,223 INFO : Assigning a ProteomeXchange ID.
23 May 2023 18:49:17,267 INFO : Assigning a DOI.
23 May 2023 18:49:18,960 INFO : Assigned DOI: 10.6069/q4r7-ec13
23 May 2023 18:49:18,963 INFO : Updating permanent link to point to the new copy of the data.
23 May 2023 18:49:18,966 INFO : Removing copy permissions given to Panorama Public
23 May 2023 18:49:18,979 INFO : Adding read permissions to all users that are folder admins in the source folder.
23 May 2023 18:49:18,979 INFO : Assigning PanoramaPublicSubmitterRole to jakob.woessmann@scilifelab.se
23 May 2023 18:49:18,979 INFO : Assigning PanoramaPublicSubmitterRole to jakob.woessmann@scilifelab.se
23 May 2023 18:49:18,980 INFO : User jakob.woessmann@scilifelab.se is already a member of group Panorama Public Submitters
23 May 2023 18:49:18,980 INFO : User jakob.woessmann@scilifelab.se is already a member of group Panorama Public Submitters
23 May 2023 18:49:18,987 INFO : Updating the 'Raw Data' tab configuration
23 May 2023 18:49:18,990 INFO : Updating dataFileUrls for run Trypsin_Comparison_Standard_Curves_2023-01-15_12-00-52.sky.zip; targetedms run ID 161222
23 May 2023 18:49:18,991 INFO : Updating dataFileUrl...
23 May 2023 18:49:18,991 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20Trypsin%20Comparison_6986b671-dbfe-103b-965b-fea6ddf56188/_temp__2023-05-23_18-16-53/export/xar/experiments_and_runs.xar.exploded/Run148642/Trypsin_Comparison_Standard_Curves_2023-01-15_12-00-52.sky.zip
23 May 2023 18:49:18,991 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/KTH%20Uhlen%20Lab%20-%20Trypsin%20Comparison/@files/Trypsin_Comparison_Standard_Curves_2023-01-15_12-00-52.sky.zip
23 May 2023 18:49:18,994 INFO : Updating dataFileUrl...
23 May 2023 18:49:18,994 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20Trypsin%20Comparison_6986b671-dbfe-103b-965b-fea6ddf56188/_temp__2023-05-23_18-16-53/export/xar/experiments_and_runs.xar.exploded/Run148642/Trypsin_Comparison_Standard_Curves_2023-01-15_12-00-52/Trypsin_Comparison_Standard_Curves.skyd
23 May 2023 18:49:18,994 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/KTH%20Uhlen%20Lab%20-%20Trypsin%20Comparison/@files/Trypsin_Comparison_Standard_Curves_2023-01-15_12-00-52/Trypsin_Comparison_Standard_Curves.skyd
23 May 2023 18:49:18,997 INFO : Updating dataFileUrls for run Trypsin_Comparison_2023-01-17_13-30-03.sky.zip; targetedms run ID 161223
23 May 2023 18:49:18,998 INFO : Updating dataFileUrl...
23 May 2023 18:49:18,998 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20Trypsin%20Comparison_6986b671-dbfe-103b-965b-fea6ddf56188/_temp__2023-05-23_18-16-53/export/xar/experiments_and_runs.xar.exploded/Run148784/Trypsin_Comparison_2023-01-17_13-30-03/Trypsin_Comparison.skyd
23 May 2023 18:49:18,998 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/KTH%20Uhlen%20Lab%20-%20Trypsin%20Comparison/@files/Trypsin_Comparison_2023-01-17_13-30-03/Trypsin_Comparison.skyd
23 May 2023 18:49:19,000 INFO : Updating dataFileUrl...
23 May 2023 18:49:19,000 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20Trypsin%20Comparison_6986b671-dbfe-103b-965b-fea6ddf56188/_temp__2023-05-23_18-16-53/export/xar/experiments_and_runs.xar.exploded/Run148784/Trypsin_Comparison_2023-01-17_13-30-03.sky.zip
23 May 2023 18:49:19,000 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/KTH%20Uhlen%20Lab%20-%20Trypsin%20Comparison/@files/Trypsin_Comparison_2023-01-17_13-30-03.sky.zip
23 May 2023 18:49:19,004 INFO : Creating a reviewer account.
23 May 2023 18:49:19,195 INFO : Created reviewer with email: User panorama+reviewer186@proteinms.net
23 May 2023 18:49:19,206 INFO : Adding user panorama+reviewer186@proteinms.net to group Reviewers
23 May 2023 18:49:19,208 INFO : Hiding the Data Pipeline tab.
23 May 2023 18:49:19,212 INFO : Updating Submission. Setting copiedExperimentId to 1617
23 May 2023 18:49:19,268 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'