30 Apr 2025 23:29:29,238 INFO : Validating data for a ProteomeXchange submission.

30 Apr 2025 23:29:29,238 INFO : =======================================

30 Apr 2025 23:29:29,250 DEBUG: Resetting Job ID: 72cacbc8-0883-103e-9c0d-1cc91aa94300

30 Apr 2025 23:29:29,270 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.PxDataValidationTask' at location 'webserver'

30 Apr 2025 23:29:29,271 INFO : Validating data for experiment Id: 1743, validation Id: 1579

30 Apr 2025 23:29:29,306 INFO : Validating data for 8 Skyline documents in 1 folders

30 Apr 2025 23:29:29,750 INFO : Sample file validation for Skyline document: SILK_P017_CSF_F1_a_2023-12-05_11-23-42.sky.zip

30 Apr 2025 23:29:29,750 INFO :   Found all sample files.

30 Apr 2025 23:29:29,783 INFO : Sample file validation for Skyline document: SILK_P017_CSF_F2_a_2023-12-05_11-46-34.sky.zip

30 Apr 2025 23:29:29,783 INFO :   Found all sample files.

30 Apr 2025 23:29:30,222 INFO : Sample file validation for Skyline document: SILK_P017_CSF_F3_a_2023-12-05_12-18-30.sky.zip

30 Apr 2025 23:29:30,222 INFO :   Found all sample files.

30 Apr 2025 23:29:30,517 INFO : Sample file validation for Skyline document: SILK_P017_CSF_F4_a_2023-12-05_12-53-48.sky.zip

30 Apr 2025 23:29:30,517 INFO :   Found all sample files.

30 Apr 2025 23:29:30,911 INFO : Sample file validation for Skyline document: SILK_P017_CSF_F5_a_2023-12-05_14-40-01.sky.zip

30 Apr 2025 23:29:30,911 INFO :   Found all sample files.

30 Apr 2025 23:29:31,574 INFO : Sample file validation for Skyline document: SILK_P017_Plasma_F1b_2023-12-05_14-53-37.sky.zip

30 Apr 2025 23:29:31,575 INFO :   Found all sample files.

30 Apr 2025 23:29:32,582 INFO : Sample file validation for Skyline document: SILK_P017_Plasma_F2b_2023-12-11_07-23-37.sky.zip

30 Apr 2025 23:29:32,583 INFO :   Found all sample files.

30 Apr 2025 23:29:33,342 INFO : Sample file validation for Skyline document: SILK_P017_Plasma_F3b_2023-12-11_07-46-49.sky.zip

30 Apr 2025 23:29:33,342 INFO :   Found all sample files.

30 Apr 2025 23:29:33,737 INFO : Modifications validation:

30 Apr 2025 23:29:33,737 INFO : VALID MODIFICATIONS:

30 Apr 2025 23:29:33,737 INFO : 11195: Carbamidomethyl (C): UNIMOD:4 - Carbamidomethyl

30 Apr 2025 23:29:33,737 INFO :     SILK_P017_CSF_F1_a_2023-12-05_11-23-42.sky.zip

30 Apr 2025 23:29:33,737 INFO :     SILK_P017_CSF_F2_a_2023-12-05_11-46-34.sky.zip

30 Apr 2025 23:29:33,737 INFO :     SILK_P017_CSF_F4_a_2023-12-05_12-53-48.sky.zip

30 Apr 2025 23:29:33,738 INFO :     SILK_P017_CSF_F5_a_2023-12-05_14-40-01.sky.zip

30 Apr 2025 23:29:33,738 INFO :     SILK_P017_CSF_F3_a_2023-12-05_12-18-30.sky.zip

30 Apr 2025 23:29:33,738 INFO :     SILK_P017_Plasma_F3b_2023-12-11_07-46-49.sky.zip

30 Apr 2025 23:29:33,738 INFO :     SILK_P017_Plasma_F1b_2023-12-05_14-53-37.sky.zip

30 Apr 2025 23:29:33,738 INFO :     SILK_P017_Plasma_F2b_2023-12-11_07-23-37.sky.zip

30 Apr 2025 23:29:33,738 INFO : 11196: Oxidation (M): UNIMOD:35 - Oxidation

30 Apr 2025 23:29:33,738 INFO :     SILK_P017_CSF_F1_a_2023-12-05_11-23-42.sky.zip

30 Apr 2025 23:29:33,738 INFO :     SILK_P017_CSF_F2_a_2023-12-05_11-46-34.sky.zip

30 Apr 2025 23:29:33,738 INFO :     SILK_P017_CSF_F4_a_2023-12-05_12-53-48.sky.zip

30 Apr 2025 23:29:33,738 INFO :     SILK_P017_CSF_F5_a_2023-12-05_14-40-01.sky.zip

30 Apr 2025 23:29:33,738 INFO :     SILK_P017_CSF_F3_a_2023-12-05_12-18-30.sky.zip

30 Apr 2025 23:29:33,738 INFO :     SILK_P017_Plasma_F3b_2023-12-11_07-46-49.sky.zip

30 Apr 2025 23:29:33,738 INFO :     SILK_P017_Plasma_F1b_2023-12-05_14-53-37.sky.zip

30 Apr 2025 23:29:33,738 INFO :     SILK_P017_Plasma_F2b_2023-12-11_07-23-37.sky.zip

30 Apr 2025 23:29:33,738 INFO : 11197: Label:13C(6) (L): UNIMOD:188 - Label:13C(6)

30 Apr 2025 23:29:33,738 INFO :     SILK_P017_CSF_F1_a_2023-12-05_11-23-42.sky.zip

30 Apr 2025 23:29:33,738 INFO :     SILK_P017_CSF_F2_a_2023-12-05_11-46-34.sky.zip

30 Apr 2025 23:29:33,738 INFO :     SILK_P017_CSF_F4_a_2023-12-05_12-53-48.sky.zip

30 Apr 2025 23:29:33,738 INFO :     SILK_P017_CSF_F5_a_2023-12-05_14-40-01.sky.zip

30 Apr 2025 23:29:33,738 INFO :     SILK_P017_CSF_F3_a_2023-12-05_12-18-30.sky.zip

30 Apr 2025 23:29:33,738 INFO :     SILK_P017_Plasma_F3b_2023-12-11_07-46-49.sky.zip

30 Apr 2025 23:29:33,738 INFO :     SILK_P017_Plasma_F1b_2023-12-05_14-53-37.sky.zip

30 Apr 2025 23:29:33,738 INFO :     SILK_P017_Plasma_F2b_2023-12-11_07-23-37.sky.zip

30 Apr 2025 23:29:33,738 INFO : INVALID MODIFICATIONS (No Unimod ID):

30 Apr 2025 23:29:33,740 INFO : Validating spectral library: SILK_P017_CSF_F3_a.blib

30 Apr 2025 23:29:33,831 INFO : 'SILK_P017_CSF_F3_a' (SILK_P017_CSF_F3_a.blib) library in 1 Skyline documents was built with 13 raw files; 13 peptide Id files. Status: VALID

30 Apr 2025 23:29:33,832 INFO : Validating spectral library: SILK_P017_CSF_F5_a.blib

30 Apr 2025 23:29:33,868 INFO : 'SILK_P017_CSF_F5_a' (SILK_P017_CSF_F5_a.blib) library in 1 Skyline documents was built with 14 raw files; 14 peptide Id files. Status: VALID

30 Apr 2025 23:29:33,868 INFO : Validating spectral library: SILK_P017_CSF_F2_a.blib

30 Apr 2025 23:29:33,917 INFO : 'SILK_P017_CSF_F2_a' (SILK_P017_CSF_F2_a.blib) library in 1 Skyline documents was built with 14 raw files; 14 peptide Id files. Status: VALID

30 Apr 2025 23:29:33,918 INFO : Validating spectral library: SILK_P017_CSF_F4_a.blib

30 Apr 2025 23:29:33,954 INFO : 'SILK_P017_CSF_F4_a' (SILK_P017_CSF_F4_a.blib) library in 1 Skyline documents was built with 14 raw files; 14 peptide Id files. Status: VALID

30 Apr 2025 23:29:33,955 INFO : Validating spectral library: SILK_P017_Plasma_F1b.blib

30 Apr 2025 23:29:34,046 INFO : 'SILK_P017_Plasma_F1b' (SILK_P017_Plasma_F1b.blib) library in 1 Skyline documents was built with 26 raw files; 26 peptide Id files. Status: Missing peptide Id  files.

30 Apr 2025 23:29:34,046 INFO :   MISSING FILES:

30 Apr 2025 23:29:34,047 INFO :     Peptide Id File: DTASelect-filter (15).mzid

30 Apr 2025 23:29:34,047 INFO :     Peptide Id File: DTASelect-filter (16).mzid

30 Apr 2025 23:29:34,047 INFO :     Peptide Id File: DTASelect-filter (17).mzid

30 Apr 2025 23:29:34,047 INFO :     Peptide Id File: DTASelect-filter (18).mzid

30 Apr 2025 23:29:34,047 INFO :     Peptide Id File: DTASelect-filter (19).mzid

30 Apr 2025 23:29:34,047 INFO :     Peptide Id File: DTASelect-filter (20).mzid

30 Apr 2025 23:29:34,047 INFO :     Peptide Id File: DTASelect-filter (21).mzid

30 Apr 2025 23:29:34,047 INFO :     Peptide Id File: DTASelect-filter (22).mzid

30 Apr 2025 23:29:34,047 INFO :     Peptide Id File: DTASelect-filter (23).mzid

30 Apr 2025 23:29:34,047 INFO :     Peptide Id File: DTASelect-filter (24).mzid

30 Apr 2025 23:29:34,047 INFO :     Peptide Id File: DTASelect-filter (25).mzid

30 Apr 2025 23:29:34,047 INFO :     Peptide Id File: DTASelect-filter (26).mzid

30 Apr 2025 23:29:34,047 INFO : Validating spectral library: SILK_P017_Plasma_F2b.blib

30 Apr 2025 23:29:34,186 INFO : 'SILK_P017_Plasma_F2b' (SILK_P017_Plasma_F2b.blib) library in 1 Skyline documents was built with 26 raw files; 26 peptide Id files. Status: Missing spectrum and peptide Id  files.

30 Apr 2025 23:29:34,186 INFO :   MISSING FILES:

30 Apr 2025 23:29:34,186 INFO :     Spectrum File: fe07a0a2-371c-4e1c-9b1d-1ae662a38e8f_1692309267.mgf

30 Apr 2025 23:29:34,186 INFO :     Spectrum File: f3b59add-7522-4222-9897-3dc889e2285c_1692295627.mgf

30 Apr 2025 23:29:34,186 INFO :     Spectrum File: e2956db6-970f-444a-8d3e-a5a4f3f45915_1692247981.mgf

30 Apr 2025 23:29:34,186 INFO :     Spectrum File: fb90f95d-d872-4baf-a492-fdffb873fd78_1692219264.mgf

30 Apr 2025 23:29:34,186 INFO :     Peptide Id File: DTASelect-filter (15).mzid

30 Apr 2025 23:29:34,186 INFO :     Peptide Id File: DTASelect-filter (16).mzid

30 Apr 2025 23:29:34,186 INFO :     Peptide Id File: DTASelect-filter (17).mzid

30 Apr 2025 23:29:34,186 INFO :     Peptide Id File: DTASelect-filter (18).mzid

30 Apr 2025 23:29:34,186 INFO :     Peptide Id File: DTASelect-filter (19).mzid

30 Apr 2025 23:29:34,186 INFO :     Peptide Id File: DTASelect-filter (20).mzid

30 Apr 2025 23:29:34,186 INFO :     Peptide Id File: DTASelect-filter (21).mzid

30 Apr 2025 23:29:34,186 INFO :     Peptide Id File: DTASelect-filter (22).mzid

30 Apr 2025 23:29:34,186 INFO :     Peptide Id File: DTASelect-filter (23).mzid

30 Apr 2025 23:29:34,186 INFO :     Peptide Id File: DTASelect-filter (24).mzid

30 Apr 2025 23:29:34,186 INFO :     Peptide Id File: DTASelect-filter (25).mzid

30 Apr 2025 23:29:34,186 INFO :     Peptide Id File: DTASelect-filter (26).mzid

30 Apr 2025 23:29:34,187 INFO : Validating spectral library: SILK_P017_CSF_F1_a.blib

30 Apr 2025 23:29:34,217 INFO : 'SILK_P017_CSF_F1_a' (SILK_P017_CSF_F1_a.blib) library in 1 Skyline documents was built with 14 raw files; 14 peptide Id files. Status: VALID

30 Apr 2025 23:29:34,218 INFO : Validating spectral library: SILK_P017_Plasma_F3b.blib

30 Apr 2025 23:29:34,314 INFO : 'SILK_P017_Plasma_F3b' (SILK_P017_Plasma_F3b.blib) library in 1 Skyline documents was built with 26 raw files; 26 peptide Id files. Status: Missing peptide Id  files.

30 Apr 2025 23:29:34,314 INFO :   MISSING FILES:

30 Apr 2025 23:29:34,314 INFO :     Peptide Id File: DTASelect-filter (15).mzid

30 Apr 2025 23:29:34,314 INFO :     Peptide Id File: DTASelect-filter (16).mzid

30 Apr 2025 23:29:34,314 INFO :     Peptide Id File: DTASelect-filter (17).mzid

30 Apr 2025 23:29:34,314 INFO :     Peptide Id File: DTASelect-filter (18).mzid

30 Apr 2025 23:29:34,314 INFO :     Peptide Id File: DTASelect-filter (19).mzid

30 Apr 2025 23:29:34,314 INFO :     Peptide Id File: DTASelect-filter (20).mzid

30 Apr 2025 23:29:34,314 INFO :     Peptide Id File: DTASelect-filter (21).mzid

30 Apr 2025 23:29:34,314 INFO :     Peptide Id File: DTASelect-filter (22).mzid

30 Apr 2025 23:29:34,314 INFO :     Peptide Id File: DTASelect-filter (23).mzid

30 Apr 2025 23:29:34,314 INFO :     Peptide Id File: DTASelect-filter (24).mzid

30 Apr 2025 23:29:34,314 INFO :     Peptide Id File: DTASelect-filter (25).mzid

30 Apr 2025 23:29:34,314 INFO :     Peptide Id File: DTASelect-filter (26).mzid

30 Apr 2025 23:29:34,314 INFO : Spectral library validation complete.

30 Apr 2025 23:29:34,315 INFO : Data validation is complete. Status is IncompleteMetadata

30 Apr 2025 23:29:34,315 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.PxDataValidationTask'