08 Jul 2022 08:51:17,703 INFO : Copying experiment "Kinase activity profiling in breast cancer samples" from folder /Utrecht Univeristy - Biomolecular MS and Proteomics/Kinase activity profiling to /Panorama Public/2022/Utrecht Univeristy - Kinase activity profiling
08 Jul 2022 08:51:17,703 INFO : =======================================
08 Jul 2022 08:52:36,216 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
08 Jul 2022 08:52:36,216 INFO :
08 Jul 2022 08:52:36,216 INFO : Exporting experiment.
08 Jul 2022 08:52:47,663 INFO : Exporting files metadata.
08 Jul 2022 08:52:47,663 DEBUG: [/Utrecht Univeristy - Biomolecular MS and Proteomics/Kinase activity profiling] Writing files metadata to /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Utrecht Univeristy - Kinase activity profiling_815a81aa-e103-103a-b0c0-fea6ddf5cd3a/_temp__2022-07-08_08-51-16/export
08 Jul 2022 08:52:47,688 INFO :
08 Jul 2022 08:52:47,688 INFO : Experiment export completed successfully.
08 Jul 2022 08:52:47,688 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
08 Jul 2022 08:52:47,917 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
08 Jul 2022 08:52:47,917 INFO :
08 Jul 2022 08:52:47,917 INFO : Importing experiment.
08 Jul 2022 08:52:47,918 DEBUG: [/Panorama Public/2022/Utrecht Univeristy - Kinase activity profiling] Importing folder properties from: /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Utrecht Univeristy - Kinase activity profiling_815a81aa-e103-103a-b0c0-fea6ddf5cd3a/_temp__2022-07-08_08-51-16/export
08 Jul 2022 08:52:47,961 INFO : Loading folder properties (folder type, settings and active modules)
08 Jul 2022 08:52:47,961 DEBUG: [/Panorama Public/2022/Utrecht Univeristy - Kinase activity profiling] Folder type: Targeted MS
08 Jul 2022 08:52:47,962 DEBUG: [/Panorama Public/2022/Utrecht Univeristy - Kinase activity profiling] Active modules: Core, FileContent, Query, Pipeline, Wiki, Issues, TargetedMS, MS2, Assay, API, PanoramaPublic, Search, Experiment, Announcements, Internal
08 Jul 2022 08:52:48,027 INFO : Done importing folder properties (folder type, settings and active modules)
08 Jul 2022 08:52:48,070 INFO : Loading container specific module properties
08 Jul 2022 08:52:48,080 INFO : Done importing container specific module properties
08 Jul 2022 08:52:48,122 INFO : Loading etl definitions
08 Jul 2022 08:52:48,164 INFO : Loading wikis
08 Jul 2022 08:52:48,165 INFO : 0 wikis imported
08 Jul 2022 08:52:48,165 INFO : Done importing wikis
08 Jul 2022 08:52:48,165 INFO : Starting to copy files
08 Jul 2022 08:52:52,659 INFO : Copied 44 files
08 Jul 2022 08:52:52,659 INFO : Ensuring exp.data rows exist for imported files
08 Jul 2022 08:52:52,924 INFO : Starting Sample Type and Data Class import
08 Jul 2022 08:52:52,924 INFO : No types XAR file to process.
08 Jul 2022 08:52:52,924 INFO : Finished importing Sample Types and Data Classes
08 Jul 2022 08:52:52,966 INFO : Loading xar
08 Jul 2022 08:52:53,546 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-10559:TargetedMS.ImportSkyZip'
08 Jul 2022 08:52:53,548 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-10559:TargetedMS.ImportSkyZip.Core'
08 Jul 2022 08:52:53,550 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-10559:TargetedMS.ImportSkyZip.Output'
08 Jul 2022 08:52:53,550 DEBUG: Protocol import complete
08 Jul 2022 08:52:53,551 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-10559:Kinase+activity+profiling+in+breast+cancer+samples'
08 Jul 2022 08:52:53,551 DEBUG: Experiment/Run group import complete
08 Jul 2022 08:52:53,571 DEBUG: Protocol action set import complete
08 Jul 2022 08:52:53,580 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-10559:TargetedMS.ImportSkyZip'
08 Jul 2022 08:52:53,588 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-10559:f5b53487-df42-103a-b0c0-fea6ddf5cd3a'
08 Jul 2022 08:52:53,591 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-10559:f5b52f9c-df42-103a-b0c0-fea6ddf5cd3a'
08 Jul 2022 08:52:53,591 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-10559:TargetedMS.ImportSkyZip.Core'
08 Jul 2022 08:52:53,593 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-10559:TargetedMS.ImportSkyZip.Output'
08 Jul 2022 08:52:53,594 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-10559:f5b53676-df42-103a-b0c0-fea6ddf5cd3a'
08 Jul 2022 08:52:53,596 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Utrecht%20Univeristy%20-%20Kinase%20activity%20profiling_815a81aa-e103-103a-b0c0-fea6ddf5cd3a/_temp__2022-07-08_08-51-16/export/xar/experiments_and_runs.xar.exploded/Run138565/Debets%20et%20al%20-%20BCB%20Quantakinome_2022-07-06_12-25-35/Debets%20et%20al%20-%20BCB%20Quantakinome.skyd into the system
08 Jul 2022 08:52:53,597 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Utrecht%20Univeristy%20-%20Kinase%20activity%20profiling_815a81aa-e103-103a-b0c0-fea6ddf5cd3a/_temp__2022-07-08_08-51-16/export/xar/experiments_and_runs.xar.exploded/Run138565/Debets%20et%20al%20-%20BCB%20Quantakinome_2022-07-06_12-25-35/Debets%20et%20al%20-%20BCB%20Quantakinome.skyd into the system
08 Jul 2022 08:52:53,597 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Utrecht%20Univeristy%20-%20Kinase%20activity%20profiling_815a81aa-e103-103a-b0c0-fea6ddf5cd3a/_temp__2022-07-08_08-51-16/export/xar/experiments_and_runs.xar.exploded/Run138565/Debets%20et%20al%20-%20BCB%20Quantakinome_2022-07-06_12-25-35.sky.zip into the system
08 Jul 2022 08:52:53,598 INFO : Starting import from Debets et al - BCB Quantakinome_2022-07-06_12-25-35.sky.zip
08 Jul 2022 08:52:53,601 INFO : Starting to import Skyline document from Debets et al - BCB Quantakinome_2022-07-06_12-25-35.sky.zip
08 Jul 2022 08:52:53,615 INFO : Expanding Debets et al - BCB Quantakinome.skyd
08 Jul 2022 08:52:53,939 INFO : Expanding Debets et al - BCB Quantakinome.sky.view
08 Jul 2022 08:52:53,940 INFO : Expanding Debets et al - BCB Quantakinome.sky
08 Jul 2022 08:52:54,005 WARN : The version of this Skyline document is 21.2. This is newer than the highest supported version 20.22
08 Jul 2022 08:52:54,527 DEBUG: Starting to load chromatogram headers
08 Jul 2022 08:52:54,553 DEBUG: Done loading chromatogram headers
08 Jul 2022 08:52:54,786 INFO : Inserting sp|Q15418|KS6A1_HUMAN
08 Jul 2022 08:52:54,840 INFO : 1% Done
08 Jul 2022 08:52:54,978 DEBUG: Total peptides inserted: 2
08 Jul 2022 08:52:54,982 INFO : Inserting sp|P50750|CDK9_HUMAN
08 Jul 2022 08:52:55,053 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:52:55,056 INFO : Inserting sp|P43403|ZAP70_HUMAN
08 Jul 2022 08:52:55,105 INFO : 2% Done
08 Jul 2022 08:52:55,169 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:52:55,172 INFO : Inserting sp|O15530|PDPK1_HUMAN
08 Jul 2022 08:52:55,238 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:52:55,242 INFO : Inserting sp|Q2M2I8|AAK1_HUMAN
08 Jul 2022 08:52:55,425 INFO : 3% Done
08 Jul 2022 08:52:55,668 INFO : 4% Done
08 Jul 2022 08:52:55,731 DEBUG: Total peptides inserted: 6
08 Jul 2022 08:52:55,733 INFO : Inserting sp|Q9HBH9|MKNK2_HUMAN
08 Jul 2022 08:52:55,810 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:52:55,812 INFO : Inserting sp|P29597|TYK2_HUMAN
08 Jul 2022 08:52:55,876 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:52:55,878 INFO : Inserting sp|P21127|CD11B_HUMAN
08 Jul 2022 08:52:55,927 INFO : 5% Done
08 Jul 2022 08:52:56,113 DEBUG: Total peptides inserted: 3
08 Jul 2022 08:52:56,115 INFO : Inserting sp|O75582|KS6A5_HUMAN
08 Jul 2022 08:52:56,163 INFO : 6% Done
08 Jul 2022 08:52:56,283 DEBUG: Total peptides inserted: 2
08 Jul 2022 08:52:56,286 INFO : Inserting sp|P09769|FGR_HUMAN
08 Jul 2022 08:52:56,347 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:52:56,349 INFO : Inserting sp|Q9H3Y6|SRMS_HUMAN
08 Jul 2022 08:52:56,409 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:52:56,412 INFO : Inserting sp|P16234|PGFRA_HUMAN
08 Jul 2022 08:52:56,463 INFO : 7% Done
08 Jul 2022 08:52:56,581 DEBUG: Total peptides inserted: 2
08 Jul 2022 08:52:56,584 INFO : Inserting sp|P11362|FGFR1_HUMAN
08 Jul 2022 08:52:56,693 INFO : 8% Done
08 Jul 2022 08:52:56,748 DEBUG: Total peptides inserted: 2
08 Jul 2022 08:52:56,750 INFO : Inserting sp|P07333|CSF1R_HUMAN
08 Jul 2022 08:52:56,875 DEBUG: Total peptides inserted: 2
08 Jul 2022 08:52:56,878 INFO : Inserting sp|P36888|FLT3_HUMAN
08 Jul 2022 08:52:56,927 INFO : 9% Done
08 Jul 2022 08:52:57,044 DEBUG: Total peptides inserted: 2
08 Jul 2022 08:52:57,047 INFO : Inserting sp|P21802|FGFR2_HUMAN
08 Jul 2022 08:52:57,162 INFO : 10% Done
08 Jul 2022 08:52:57,278 DEBUG: Total peptides inserted: 3
08 Jul 2022 08:52:57,281 INFO : Inserting sp|P08069|IGF1R_HUMAN
08 Jul 2022 08:52:57,463 INFO : 11% Done
08 Jul 2022 08:52:57,522 DEBUG: Total peptides inserted: 3
08 Jul 2022 08:52:57,524 INFO : Inserting sp|P04629|NTRK1_HUMAN
08 Jul 2022 08:52:57,716 INFO : 12% Done
08 Jul 2022 08:52:57,790 DEBUG: Total peptides inserted: 3
08 Jul 2022 08:52:57,793 INFO : Inserting sp|P17948|VGFR1_HUMAN
08 Jul 2022 08:52:57,859 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:52:57,862 INFO : Inserting sp|P35968|VGFR2_HUMAN
08 Jul 2022 08:52:57,925 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:52:57,928 INFO : Inserting sp|P09619|PGFRB_HUMAN
08 Jul 2022 08:52:57,977 INFO : 13% Done
08 Jul 2022 08:52:58,035 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:52:58,038 INFO : Inserting sp|P22607|FGFR3_HUMAN
08 Jul 2022 08:52:58,160 DEBUG: Total peptides inserted: 2
08 Jul 2022 08:52:58,162 INFO : Inserting sp|P07949|RET_HUMAN
08 Jul 2022 08:52:58,215 INFO : 14% Done
08 Jul 2022 08:52:58,402 DEBUG: Total peptides inserted: 3
08 Jul 2022 08:52:58,404 INFO : Inserting sp|P14616|INSRR_HUMAN
08 Jul 2022 08:52:58,457 INFO : 15% Done
08 Jul 2022 08:52:58,665 DEBUG: Total peptides inserted: 3
08 Jul 2022 08:52:58,667 INFO : Inserting sp|Q16620|NTRK2_HUMAN
08 Jul 2022 08:52:58,718 INFO : 16% Done
08 Jul 2022 08:52:58,910 DEBUG: Total peptides inserted: 3
08 Jul 2022 08:52:58,913 INFO : Inserting sp|P52333|JAK3_HUMAN
08 Jul 2022 08:52:59,022 INFO : 17% Done
08 Jul 2022 08:52:59,133 DEBUG: Total peptides inserted: 3
08 Jul 2022 08:52:59,135 INFO : Inserting sp|Q13882|PTK6_HUMAN
08 Jul 2022 08:52:59,245 INFO : 18% Done
08 Jul 2022 08:52:59,359 DEBUG: Total peptides inserted: 3
08 Jul 2022 08:52:59,361 INFO : Inserting sp|P07332|FES_HUMAN
08 Jul 2022 08:52:59,420 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:52:59,423 INFO : Inserting sp|Q01973|ROR1_HUMAN
08 Jul 2022 08:52:59,475 INFO : 19% Done
08 Jul 2022 08:52:59,536 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:52:59,538 INFO : Inserting sp|Q05655|KPCD_HUMAN
08 Jul 2022 08:52:59,599 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:52:59,601 INFO : Inserting sp|Q15569|TESK1_HUMAN
08 Jul 2022 08:52:59,708 INFO : 20% Done
08 Jul 2022 08:52:59,763 DEBUG: Total peptides inserted: 2
08 Jul 2022 08:52:59,766 INFO : Inserting sp|Q01974|ROR2_HUMAN
08 Jul 2022 08:52:59,828 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:52:59,830 INFO : Inserting sp|Q9UQ88|CD11A_HUMAN
08 Jul 2022 08:53:00,007 INFO : 21% Done
08 Jul 2022 08:53:00,066 DEBUG: Total peptides inserted: 3
08 Jul 2022 08:53:00,069 INFO : Inserting sp|P08581|MET_HUMAN
08 Jul 2022 08:53:00,269 INFO : 22% Done
08 Jul 2022 08:53:00,325 DEBUG: Total peptides inserted: 3
08 Jul 2022 08:53:00,327 INFO : Inserting sp|Q04912|RON_HUMAN
08 Jul 2022 08:53:00,506 INFO : 23% Done
08 Jul 2022 08:53:00,560 DEBUG: Total peptides inserted: 3
08 Jul 2022 08:53:00,563 INFO : Inserting sp|P23458|JAK1_HUMAN
08 Jul 2022 08:53:00,730 INFO : 24% Done
08 Jul 2022 08:53:00,784 DEBUG: Total peptides inserted: 3
08 Jul 2022 08:53:00,786 INFO : Inserting sp|Q9NWZ3|IRAK4_HUMAN
08 Jul 2022 08:53:00,956 INFO : 25% Done
08 Jul 2022 08:53:01,071 DEBUG: Total peptides inserted: 4
08 Jul 2022 08:53:01,073 INFO : Inserting sp|Q9HC98|NEK6_HUMAN
08 Jul 2022 08:53:01,304 DEBUG: Total peptides inserted: 4
08 Jul 2022 08:53:01,306 INFO : Inserting sp|Q08881|ITK_HUMAN
08 Jul 2022 08:53:01,365 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:01,367 INFO : Inserting sp|Q14164|IKKE_HUMAN
08 Jul 2022 08:53:01,415 INFO : 26% Done
08 Jul 2022 08:53:01,527 DEBUG: Total peptides inserted: 2
08 Jul 2022 08:53:01,530 INFO : Inserting sp|Q9UQM7|KCC2A_HUMAN
08 Jul 2022 08:53:01,634 INFO : 27% Done
08 Jul 2022 08:53:01,867 INFO : 28% Done
08 Jul 2022 08:53:01,980 DEBUG: Total peptides inserted: 6
08 Jul 2022 08:53:01,982 INFO : Inserting sp|Q8IU85|KCC1D_HUMAN
08 Jul 2022 08:53:02,093 INFO : 29% Done
08 Jul 2022 08:53:02,146 DEBUG: Total peptides inserted: 2
08 Jul 2022 08:53:02,149 INFO : Inserting sp|P49840|GSK3A_HUMAN
08 Jul 2022 08:53:02,206 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:02,208 INFO : Inserting sp|Q16659|MK06_HUMAN
08 Jul 2022 08:53:02,267 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:02,269 INFO : Inserting sp|Q02763|TIE2_HUMAN
08 Jul 2022 08:53:02,326 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:02,328 INFO : Inserting sp|O43318|M3K7_HUMAN
08 Jul 2022 08:53:02,373 INFO : 30% Done
08 Jul 2022 08:53:02,506 DEBUG: Total peptides inserted: 2
08 Jul 2022 08:53:02,508 INFO : Inserting sp|Q15835|RK_HUMAN
08 Jul 2022 08:53:02,574 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:02,577 INFO : Inserting sp|Q6PHR2|ULK3_HUMAN
08 Jul 2022 08:53:02,625 INFO : 31% Done
08 Jul 2022 08:53:02,850 INFO : 32% Done
08 Jul 2022 08:53:02,906 DEBUG: Total peptides inserted: 4
08 Jul 2022 08:53:02,908 INFO : Inserting sp|P41279|M3K8_HUMAN
08 Jul 2022 08:53:03,035 DEBUG: Total peptides inserted: 2
08 Jul 2022 08:53:03,038 INFO : Inserting sp|P51617|IRAK1_HUMAN
08 Jul 2022 08:53:03,102 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:03,104 INFO : Inserting sp|P22455|FGFR4_HUMAN
08 Jul 2022 08:53:03,153 INFO : 33% Done
08 Jul 2022 08:53:03,344 DEBUG: Total peptides inserted: 3
08 Jul 2022 08:53:03,346 INFO : Inserting sp|P31152|MK04_HUMAN
08 Jul 2022 08:53:03,394 INFO : 34% Done
08 Jul 2022 08:53:03,450 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:03,452 INFO : Inserting sp|O15264|MK13_HUMAN
08 Jul 2022 08:53:03,619 INFO : 35% Done
08 Jul 2022 08:53:03,841 INFO : 36% Done
08 Jul 2022 08:53:03,894 DEBUG: Total peptides inserted: 6
08 Jul 2022 08:53:03,897 INFO : Inserting sp|Q9UBE8|NLK_HUMAN
08 Jul 2022 08:53:04,013 DEBUG: Total peptides inserted: 2
08 Jul 2022 08:53:04,015 INFO : Inserting sp|Q16539|MK14_HUMAN
08 Jul 2022 08:53:04,126 INFO : 37% Done
08 Jul 2022 08:53:04,337 INFO : 38% Done
08 Jul 2022 08:53:04,450 DEBUG: Total peptides inserted: 6
08 Jul 2022 08:53:04,452 INFO : Inserting sp|Q13546|RIPK1_HUMAN
08 Jul 2022 08:53:04,511 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:04,513 INFO : Inserting sp|P27361|MK03_HUMAN
08 Jul 2022 08:53:04,561 INFO : 39% Done
08 Jul 2022 08:53:04,738 DEBUG: Total peptides inserted: 3
08 Jul 2022 08:53:04,740 INFO : Inserting sp|Q9NYL2|MLTK_HUMAN
08 Jul 2022 08:53:04,786 INFO : 40% Done
08 Jul 2022 08:53:04,840 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:04,843 INFO : Inserting sp|Q8IW41|MAPK5_HUMAN
08 Jul 2022 08:53:04,959 DEBUG: Total peptides inserted: 2
08 Jul 2022 08:53:04,962 INFO : Inserting sp|P10398|ARAF_HUMAN
08 Jul 2022 08:53:05,021 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:05,023 INFO : Inserting sp|P51451|BLK_HUMAN
08 Jul 2022 08:53:05,070 INFO : 41% Done
08 Jul 2022 08:53:05,123 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:05,125 INFO : Inserting sp|P30530|UFO_HUMAN
08 Jul 2022 08:53:05,181 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:05,183 INFO : Inserting sp|Q13627|DYR1A_HUMAN
08 Jul 2022 08:53:05,288 INFO : 42% Done
08 Jul 2022 08:53:05,399 DEBUG: Total peptides inserted: 3
08 Jul 2022 08:53:05,401 INFO : Inserting sp|Q12866|MERTK_HUMAN
08 Jul 2022 08:53:05,511 INFO : 43% Done
08 Jul 2022 08:53:05,622 DEBUG: Total peptides inserted: 3
08 Jul 2022 08:53:05,624 INFO : Inserting sp|Q09013|DMPK_HUMAN
08 Jul 2022 08:53:05,684 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:05,686 INFO : Inserting sp|Q96S53|TESK2_HUMAN
08 Jul 2022 08:53:05,733 INFO : 44% Done
08 Jul 2022 08:53:05,843 DEBUG: Total peptides inserted: 2
08 Jul 2022 08:53:05,845 INFO : Inserting sp|P45985|MP2K4_HUMAN
08 Jul 2022 08:53:05,904 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:05,907 INFO : Inserting sp|Q6DT37|MRCKG_HUMAN
08 Jul 2022 08:53:05,966 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:05,968 INFO : Inserting sp|Q02750|MP2K1_HUMAN
08 Jul 2022 08:53:06,017 INFO : 45% Done
08 Jul 2022 08:53:06,080 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:06,083 INFO : Inserting sp|Q9P0L2|MARK1_HUMAN
08 Jul 2022 08:53:06,244 INFO : 46% Done
08 Jul 2022 08:53:06,355 DEBUG: Total peptides inserted: 4
08 Jul 2022 08:53:06,357 INFO : Inserting sp|P00519|ABL1_HUMAN
08 Jul 2022 08:53:06,465 INFO : 47% Done
08 Jul 2022 08:53:06,698 INFO : 48% Done
08 Jul 2022 08:53:06,816 DEBUG: Total peptides inserted: 6
08 Jul 2022 08:53:06,818 INFO : Inserting sp|O43781|DYRK3_HUMAN
08 Jul 2022 08:53:06,877 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:06,879 INFO : Inserting sp|O43353|RIPK2_HUMAN
08 Jul 2022 08:53:06,943 INFO : 49% Done
08 Jul 2022 08:53:07,074 DEBUG: Total peptides inserted: 2
08 Jul 2022 08:53:07,077 INFO : Inserting sp|Q02779|M3K10_HUMAN
08 Jul 2022 08:53:07,307 INFO : 50% Done
08 Jul 2022 08:53:07,643 INFO : 51% Done
08 Jul 2022 08:53:10,277 DEBUG: Total peptides inserted: 8
08 Jul 2022 08:53:10,280 INFO : Inserting sp|Q5TCX8|M3KL4_HUMAN
08 Jul 2022 08:53:10,326 INFO : 52% Done
08 Jul 2022 08:53:10,452 DEBUG: Total peptides inserted: 2
08 Jul 2022 08:53:10,454 INFO : Inserting sp|P10721|KIT_HUMAN
08 Jul 2022 08:53:10,563 INFO : 53% Done
08 Jul 2022 08:53:10,688 DEBUG: Total peptides inserted: 3
08 Jul 2022 08:53:10,691 INFO : Inserting sp|O15146|MUSK_HUMAN
08 Jul 2022 08:53:10,749 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:10,752 INFO : Inserting sp|Q08345|DDR1_HUMAN
08 Jul 2022 08:53:10,804 INFO : 54% Done
08 Jul 2022 08:53:10,995 DEBUG: Total peptides inserted: 3
08 Jul 2022 08:53:10,997 INFO : Inserting sp|Q16832|DDR2_HUMAN
08 Jul 2022 08:53:11,052 INFO : 55% Done
08 Jul 2022 08:53:11,277 DEBUG: Total peptides inserted: 3
08 Jul 2022 08:53:11,279 INFO : Inserting sp|Q9Y6E0|STK24_HUMAN
08 Jul 2022 08:53:11,328 INFO : 56% Done
08 Jul 2022 08:53:11,441 DEBUG: Total peptides inserted: 2
08 Jul 2022 08:53:11,443 INFO : Inserting sp|Q9UPZ9|ICK_HUMAN
08 Jul 2022 08:53:11,560 INFO : 57% Done
08 Jul 2022 08:53:11,693 DEBUG: Total peptides inserted: 3
08 Jul 2022 08:53:11,696 INFO : Inserting sp|Q13873|BMPR2_HUMAN
08 Jul 2022 08:53:11,765 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:11,767 INFO : Inserting sp|Q15759|MK11_HUMAN
08 Jul 2022 08:53:11,816 INFO : 58% Done
08 Jul 2022 08:53:12,052 INFO : 59% Done
08 Jul 2022 08:53:12,232 DEBUG: Total peptides inserted: 6
08 Jul 2022 08:53:12,235 INFO : Inserting sp|P53778|MK12_HUMAN
08 Jul 2022 08:53:12,339 INFO : 60% Done
08 Jul 2022 08:53:12,456 DEBUG: Total peptides inserted: 3
08 Jul 2022 08:53:12,458 INFO : Inserting sp|O75716|STK16_HUMAN
08 Jul 2022 08:53:12,563 INFO : 61% Done
08 Jul 2022 08:53:12,755 DEBUG: Total peptides inserted: 4
08 Jul 2022 08:53:12,757 INFO : Inserting sp|P16591|FER_HUMAN
08 Jul 2022 08:53:12,803 INFO : 62% Done
08 Jul 2022 08:53:12,858 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:12,861 INFO : Inserting sp|Q13554|KCC2B_HUMAN
08 Jul 2022 08:53:12,925 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:12,928 INFO : Inserting sp|Q9NYV4|CDK12_HUMAN
08 Jul 2022 08:53:13,040 INFO : 63% Done
08 Jul 2022 08:53:13,096 DEBUG: Total peptides inserted: 2
08 Jul 2022 08:53:13,098 INFO : Inserting sp|O96013|PAK4_HUMAN
08 Jul 2022 08:53:13,231 DEBUG: Total peptides inserted: 2
08 Jul 2022 08:53:13,233 INFO : Inserting sp|Q9NQU5|PAK6_HUMAN
08 Jul 2022 08:53:13,280 INFO : 64% Done
08 Jul 2022 08:53:13,400 DEBUG: Total peptides inserted: 2
08 Jul 2022 08:53:13,402 INFO : Inserting sp|Q15139|KPCD1_HUMAN
08 Jul 2022 08:53:13,474 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:13,477 INFO : Inserting sp|Q9P2K8|E2AK4_HUMAN
08 Jul 2022 08:53:13,525 INFO : 65% Done
08 Jul 2022 08:53:13,778 INFO : 66% Done
08 Jul 2022 08:53:13,902 DEBUG: Total peptides inserted: 5
08 Jul 2022 08:53:13,904 INFO : Inserting sp|Q15303|ERBB4_HUMAN
08 Jul 2022 08:53:13,966 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:13,968 INFO : Inserting sp|P50613|CDK7_HUMAN
08 Jul 2022 08:53:14,085 INFO : 67% Done
08 Jul 2022 08:53:14,174 DEBUG: Total peptides inserted: 2
08 Jul 2022 08:53:14,177 INFO : Inserting sp|Q96GX5|GWL_HUMAN
08 Jul 2022 08:53:14,369 INFO : 68% Done
08 Jul 2022 08:53:14,625 INFO : 69% Done
08 Jul 2022 08:53:14,834 DEBUG: Total peptides inserted: 8
08 Jul 2022 08:53:14,836 INFO : Inserting sp|P57059|SIK1_HUMAN
08 Jul 2022 08:53:14,886 INFO : 70% Done
08 Jul 2022 08:53:14,941 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:14,943 INFO : Inserting sp|Q13153|PAK1_HUMAN
08 Jul 2022 08:53:15,003 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:15,005 INFO : Inserting sp|Q9BZL6|KPCD2_HUMAN
08 Jul 2022 08:53:15,115 INFO : 71% Done
08 Jul 2022 08:53:15,180 DEBUG: Total peptides inserted: 2
08 Jul 2022 08:53:15,182 INFO : Inserting sp|Q9NYY3|PLK2_HUMAN
08 Jul 2022 08:53:15,242 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:15,244 INFO : Inserting sp|O96017|CHK2_HUMAN
08 Jul 2022 08:53:15,348 INFO : 72% Done
08 Jul 2022 08:53:15,403 DEBUG: Total peptides inserted: 2
08 Jul 2022 08:53:15,403 INFO : Imported 100 peptide groups.
08 Jul 2022 08:53:15,405 INFO : Inserting sp|Q16566|KCC4_HUMAN
08 Jul 2022 08:53:15,527 DEBUG: Total peptides inserted: 2
08 Jul 2022 08:53:15,529 INFO : Inserting sp|Q13163|MP2K5_HUMAN
08 Jul 2022 08:53:15,577 INFO : 73% Done
08 Jul 2022 08:53:15,691 DEBUG: Total peptides inserted: 2
08 Jul 2022 08:53:15,693 INFO : Inserting sp|P45984|MK09_HUMAN
08 Jul 2022 08:53:15,857 INFO : 74% Done
08 Jul 2022 08:53:16,029 DEBUG: Total peptides inserted: 5
08 Jul 2022 08:53:16,031 INFO : Inserting sp|P45983|MK08_HUMAN
08 Jul 2022 08:53:16,279 INFO : 75% Done
08 Jul 2022 08:53:16,412 DEBUG: Total peptides inserted: 5
08 Jul 2022 08:53:16,414 INFO : Inserting sp|P17252|KPCA_HUMAN
08 Jul 2022 08:53:16,534 INFO : 76% Done
08 Jul 2022 08:53:16,590 DEBUG: Total peptides inserted: 2
08 Jul 2022 08:53:16,592 INFO : Inserting sp|P51955|NEK2_HUMAN
08 Jul 2022 08:53:16,780 INFO : 77% Done
08 Jul 2022 08:53:16,960 DEBUG: Total peptides inserted: 5
08 Jul 2022 08:53:16,962 INFO : Inserting sp|P53350|PLK1_HUMAN
08 Jul 2022 08:53:17,072 INFO : 78% Done
08 Jul 2022 08:53:17,189 DEBUG: Total peptides inserted: 3
08 Jul 2022 08:53:17,191 INFO : Inserting sp|Q04759|KPCT_HUMAN
08 Jul 2022 08:53:17,249 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:17,251 INFO : Inserting sp|Q8NB16|MLKL_HUMAN
08 Jul 2022 08:53:17,301 INFO : 79% Done
08 Jul 2022 08:53:17,417 DEBUG: Total peptides inserted: 2
08 Jul 2022 08:53:17,420 INFO : Inserting sp|Q16513|PKN2_HUMAN
08 Jul 2022 08:53:17,501 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:17,503 INFO : Inserting sp|Q6P5Z2|PKN3_HUMAN
08 Jul 2022 08:53:17,552 INFO : 80% Done
08 Jul 2022 08:53:17,679 DEBUG: Total peptides inserted: 2
08 Jul 2022 08:53:17,681 INFO : Inserting sp|Q16584|M3K11_HUMAN
08 Jul 2022 08:53:17,742 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:17,744 INFO : Inserting sp|Q9H422|HIPK3_HUMAN
08 Jul 2022 08:53:17,791 INFO : 81% Done
08 Jul 2022 08:53:17,845 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:17,847 INFO : Inserting sp|P17612|KAPCA_HUMAN
08 Jul 2022 08:53:17,975 DEBUG: Total peptides inserted: 2
08 Jul 2022 08:53:17,978 INFO : Inserting sp|P28482|MK01_HUMAN
08 Jul 2022 08:53:18,024 INFO : 82% Done
08 Jul 2022 08:53:18,203 DEBUG: Total peptides inserted: 3
08 Jul 2022 08:53:18,205 INFO : Inserting sp|P42685|FRK_HUMAN
08 Jul 2022 08:53:18,253 INFO : 83% Done
08 Jul 2022 08:53:18,307 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:18,309 INFO : Inserting sp|P24941|CDK2_HUMAN
08 Jul 2022 08:53:18,376 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:18,377 INFO : Inserting sp|Q15375|EPHA7_HUMAN
08 Jul 2022 08:53:18,434 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:18,436 INFO : Inserting sp|P08631|HCK_HUMAN
08 Jul 2022 08:53:18,483 INFO : 84% Done
08 Jul 2022 08:53:18,537 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:18,539 INFO : Inserting sp|P29320|EPHA3_HUMAN
08 Jul 2022 08:53:18,595 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:18,597 INFO : Inserting sp|Q9UF33|EPHA6_HUMAN
08 Jul 2022 08:53:18,656 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:18,658 INFO : Inserting sp|O14976|GAK_HUMAN
08 Jul 2022 08:53:18,764 INFO : 85% Done
08 Jul 2022 08:53:19,044 INFO : 86% Done
08 Jul 2022 08:53:19,104 DEBUG: Total peptides inserted: 5
08 Jul 2022 08:53:19,107 INFO : Inserting sp|P49760|CLK2_HUMAN
08 Jul 2022 08:53:19,171 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:19,173 INFO : Inserting sp|P06493|CDK1_HUMAN
08 Jul 2022 08:53:19,280 INFO : 87% Done
08 Jul 2022 08:53:19,337 DEBUG: Total peptides inserted: 2
08 Jul 2022 08:53:19,340 INFO : Inserting sp|Q92630|DYRK2_HUMAN
08 Jul 2022 08:53:19,521 INFO : 88% Done
08 Jul 2022 08:53:19,576 DEBUG: Total peptides inserted: 3
08 Jul 2022 08:53:19,578 INFO : Inserting sp|P06241|FYN_HUMAN
08 Jul 2022 08:53:19,714 DEBUG: Total peptides inserted: 2
08 Jul 2022 08:53:19,717 INFO : Inserting sp|P29317|EPHA2_HUMAN
08 Jul 2022 08:53:19,766 INFO : 89% Done
08 Jul 2022 08:53:20,025 INFO : 90% Done
08 Jul 2022 08:53:20,097 DEBUG: Total peptides inserted: 4
08 Jul 2022 08:53:20,101 INFO : Inserting sp|P43405|KSYK_HUMAN
08 Jul 2022 08:53:20,335 INFO : 91% Done
08 Jul 2022 08:53:20,406 DEBUG: Total peptides inserted: 3
08 Jul 2022 08:53:20,408 INFO : Inserting sp|Q3YBR2|TBRG1_HUMAN
08 Jul 2022 08:53:20,472 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:20,477 INFO : Inserting sp|Q8WZ42|TITIN_HUMAN
08 Jul 2022 08:53:20,526 INFO : 92% Done
08 Jul 2022 08:53:20,726 DEBUG: Total peptides inserted: 3
08 Jul 2022 08:53:20,729 INFO : Inserting sp|Q05397|FAK1_HUMAN
08 Jul 2022 08:53:20,780 INFO : 93% Done
08 Jul 2022 08:53:21,096 INFO : 94% Done
08 Jul 2022 08:53:21,222 DEBUG: Total peptides inserted: 6
08 Jul 2022 08:53:21,224 INFO : Inserting sp|Q14289|FAK2_HUMAN
08 Jul 2022 08:53:21,335 INFO : 95% Done
08 Jul 2022 08:53:21,449 DEBUG: Total peptides inserted: 3
08 Jul 2022 08:53:21,451 INFO : Inserting sp|Q06187|BTK_HUMAN
08 Jul 2022 08:53:21,511 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:21,513 INFO : Inserting sp|P42681|TXK_HUMAN
08 Jul 2022 08:53:21,561 INFO : 96% Done
08 Jul 2022 08:53:21,616 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:21,618 INFO : Inserting sp|P42680|TEC_HUMAN
08 Jul 2022 08:53:21,679 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:21,681 INFO : Inserting sp|P51813|BMX_HUMAN
08 Jul 2022 08:53:21,741 DEBUG: Total peptides inserted: 1
08 Jul 2022 08:53:21,741 INFO : Inserting iRT-C18 Standard Peptides
08 Jul 2022 08:53:21,811 INFO : 97% Done
08 Jul 2022 08:53:21,983 INFO : 98% Done
08 Jul 2022 08:53:22,066 DEBUG: Total peptides inserted: 11
08 Jul 2022 08:53:22,067 INFO : Done parsing Skyline document.
08 Jul 2022 08:53:22,068 INFO : Creating and populating temp tables for Proportion values
08 Jul 2022 08:53:22,246 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
08 Jul 2022 08:53:23,111 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
08 Jul 2022 08:53:23,408 INFO : Cleaning up temp tables
08 Jul 2022 08:53:23,691 INFO : Completed import of Skyline document from Debets et al - BCB Quantakinome_2022-07-06_12-25-35.sky.zip
08 Jul 2022 08:53:23,734 INFO : 100% Done
08 Jul 2022 08:53:23,739 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Utrecht%20Univeristy%20-%20Kinase%20activity%20profiling_815a81aa-e103-103a-b0c0-fea6ddf5cd3a/_temp__2022-07-08_08-51-16/export/xar/experiments_and_runs.xar.exploded/Run138565/Debets%20et%20al%20-%20BCB%20Quantakinome_2022-07-06_12-25-35.sky.zip into the system
08 Jul 2022 08:53:23,746 INFO : Done importing xar
08 Jul 2022 08:53:23,789 INFO : Loading pages and webpart properties
08 Jul 2022 08:53:23,871 INFO : Done importing 4 page(s) with 7 webpart(s)
08 Jul 2022 08:53:23,914 INFO : Starting Sample Status Data import
08 Jul 2022 08:53:23,914 INFO : No sample types XAR file to process.
08 Jul 2022 08:53:23,914 INFO : Finished importing Sample Status Data
08 Jul 2022 08:53:23,959 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
08 Jul 2022 08:53:23,962 INFO : A row containing [Description: 'null', Color: '800000', Name: 'Reagent Change'] values already exists. Skipping
08 Jul 2022 08:53:23,962 INFO : A row containing [Description: 'null', Color: 'FF0000', Name: 'Instrumentation Change'] values already exists. Skipping
08 Jul 2022 08:53:23,963 INFO : A row containing [Description: 'null', Color: '0000FF', Name: 'Technician Change'] values already exists. Skipping
08 Jul 2022 08:53:23,963 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
08 Jul 2022 08:53:23,963 INFO : Starting QC Plot settings import
08 Jul 2022 08:53:23,963 INFO : Finished importing 0 QC Plot settings from PlotSettings.properties as properties.
08 Jul 2022 08:53:23,963 INFO : Importing files metadata.
08 Jul 2022 08:53:23,963 DEBUG: [/Panorama Public/2022/Utrecht Univeristy - Kinase activity profiling] Reading files metadata from /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Utrecht Univeristy - Kinase activity profiling_815a81aa-e103-103a-b0c0-fea6ddf5cd3a/_temp__2022-07-08_08-51-16/export
08 Jul 2022 08:53:23,964 INFO :
08 Jul 2022 08:53:23,964 INFO : Experiment import completed successfully.
08 Jul 2022 08:53:23,964 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
08 Jul 2022 08:53:24,110 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
08 Jul 2022 08:53:24,110 INFO :
08 Jul 2022 08:53:24,110 INFO : Checking for library folders.
08 Jul 2022 08:53:24,112 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
08 Jul 2022 08:53:24,250 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
08 Jul 2022 08:53:24,251 INFO :
08 Jul 2022 08:53:24,251 INFO : Finishing up experiment copy.
08 Jul 2022 08:53:24,253 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
08 Jul 2022 08:53:24,253 INFO : Setting version on new experiment to 1
08 Jul 2022 08:53:24,253 INFO : Assigning a ProteomeXchange ID.
08 Jul 2022 08:53:25,034 INFO : Assigning a DOI.
08 Jul 2022 08:53:27,327 INFO : Assigned DOI: 10.6069/khcv-hz81
08 Jul 2022 08:53:27,332 INFO : Updating access URL to point to the new copy of the data.
08 Jul 2022 08:53:27,338 INFO : Removing copy permissions given to Panorama Public
08 Jul 2022 08:53:27,349 INFO : Adding read permissions to all users that are folder admins in the source folder.
08 Jul 2022 08:53:27,356 INFO : Updating the 'Raw Data' tab configuration
08 Jul 2022 08:53:27,358 INFO : Updating dataFileUrls for run Debets et al - BCB Quantakinome_2022-07-06_12-25-35.sky.zip; targetedms run ID 141395
08 Jul 2022 08:53:27,358 INFO : Updating dataFileUrl...
08 Jul 2022 08:53:27,359 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Utrecht%20Univeristy%20-%20Kinase%20activity%20profiling_815a81aa-e103-103a-b0c0-fea6ddf5cd3a/_temp__2022-07-08_08-51-16/export/xar/experiments_and_runs.xar.exploded/Run138565/Debets%20et%20al%20-%20BCB%20Quantakinome_2022-07-06_12-25-35/Debets%20et%20al%20-%20BCB%20Quantakinome.skyd
08 Jul 2022 08:53:27,359 INFO : to: file:///data/labkey/files/Panorama%20Public/2022/Utrecht%20Univeristy%20-%20Kinase%20activity%20profiling/@files/Debets%20et%20al%20-%20BCB%20Quantakinome_2022-07-06_12-25-35/Debets%20et%20al%20-%20BCB%20Quantakinome.skyd
08 Jul 2022 08:53:27,360 INFO : Updating dataFileUrl...
08 Jul 2022 08:53:27,361 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Utrecht%20Univeristy%20-%20Kinase%20activity%20profiling_815a81aa-e103-103a-b0c0-fea6ddf5cd3a/_temp__2022-07-08_08-51-16/export/xar/experiments_and_runs.xar.exploded/Run138565/Debets%20et%20al%20-%20BCB%20Quantakinome_2022-07-06_12-25-35.sky.zip
08 Jul 2022 08:53:27,361 INFO : to: file:///data/labkey/files/Panorama%20Public/2022/Utrecht%20Univeristy%20-%20Kinase%20activity%20profiling/@files/Debets%20et%20al%20-%20BCB%20Quantakinome_2022-07-06_12-25-35.sky.zip
08 Jul 2022 08:53:27,368 INFO : Creating a reviewer account.
08 Jul 2022 08:53:27,600 INFO : Created reviewer with email: User panorama+reviewer135@proteinms.net
08 Jul 2022 08:53:27,611 INFO : Hiding the Data Pipeline tab.
08 Jul 2022 08:53:27,616 INFO : Updating Submission. Setting copiedExperimentId to 1479
08 Jul 2022 08:53:27,700 INFO : Emailing submitter.
08 Jul 2022 08:53:27,790 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'