Copying experiment: HIC1 interacts with FOXP3 multi protein complex: a novel mechanism to regulate human regulatory T cell differentiation and function

Turku Bioscience Lahesmaa Group - HIC1 Interactome in Treg Cells

Job Status

Created: 2022-12-04 13:02:15
Modified: 2022-12-04 13:02:45
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Copying experiment: HIC1 interacts with FOXP3 multi protein complex: a novel mechanism to regulate human regulatory T cell differentiation and function
File Path: /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Turku Bioscience Lahesmaa Group - HIC1 Interactome in Treg Cells_34e0e560-5644-103b-b846-fea6ddf50e04/_temp__2022-12-04_13-02-15/Experiment_1621.log
Files: Experiment_1621.log
Completed Runs: HIC1_IP_batch_Edit_for_Report_HL_2022-12-02_15-31-05.sky.zip

Log File


04 Dec 2022 13:02:15,488 INFO : Copying experiment "HIC1 interacts with FOXP3 multi protein complex: a novel mechanism to regulate human regulatory T cell differentiation and function" from folder /Turku Bioscience - Lahesmaa Group/HIC1 Interactome in Treg Cells to /Panorama Public/2022/Turku Bioscience Lahesmaa Group - HIC1 Interactome in Treg Cells
04 Dec 2022 13:02:15,488 INFO : =======================================
04 Dec 2022 13:02:15,537 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
04 Dec 2022 13:02:15,537 INFO :
04 Dec 2022 13:02:15,537 INFO : Exporting experiment.
04 Dec 2022 13:02:30,127 INFO : Exporting files metadata.
04 Dec 2022 13:02:30,131 INFO :
04 Dec 2022 13:02:30,131 INFO : Experiment export completed successfully.
04 Dec 2022 13:02:30,131 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
04 Dec 2022 13:02:30,153 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
04 Dec 2022 13:02:30,153 INFO :
04 Dec 2022 13:02:30,153 INFO : Importing experiment.
04 Dec 2022 13:02:30,156 INFO : Loading folder properties (folder type, settings and active modules)
04 Dec 2022 13:02:30,221 INFO : Done importing folder properties (folder type, settings and active modules)
04 Dec 2022 13:02:30,222 INFO : Loading container specific module properties
04 Dec 2022 13:02:30,231 INFO : Done importing container specific module properties
04 Dec 2022 13:02:30,232 INFO : Loading etl definitions
04 Dec 2022 13:02:30,235 INFO : Loading wikis
04 Dec 2022 13:02:30,237 INFO : 0 wikis imported
04 Dec 2022 13:02:30,237 INFO : Done importing wikis
04 Dec 2022 13:02:30,237 INFO : Starting to copy files
04 Dec 2022 13:02:36,635 INFO : Copied 60 files
04 Dec 2022 13:02:36,635 INFO : Ensuring exp.data rows exist for imported files
04 Dec 2022 13:02:36,871 INFO : Starting Sample Type and Data Class import
04 Dec 2022 13:02:36,871 INFO : No types XAR file to process.
04 Dec 2022 13:02:36,871 INFO : Finished importing Sample Types and Data Classes
04 Dec 2022 13:02:36,872 INFO : Loading xar
04 Dec 2022 13:02:37,989 INFO : Starting import from HIC1_IP_batch_Edit_for_Report_HL_2022-12-02_15-31-05.sky.zip
04 Dec 2022 13:02:37,992 INFO : Starting to import Skyline document from HIC1_IP_batch_Edit_for_Report_HL_2022-12-02_15-31-05.sky.zip
04 Dec 2022 13:02:37,994 INFO : Expanding SP_Human.protdb
04 Dec 2022 13:02:40,165 INFO : Expanding FIXPIM.irtdb
04 Dec 2022 13:02:40,166 INFO : Expanding PANC_Dec2018x.blib
04 Dec 2022 13:02:40,178 INFO : Expanding TH17newer.blib
04 Dec 2022 13:02:40,182 INFO : Expanding BC1713.blib
04 Dec 2022 13:02:40,183 INFO : Expanding BC1713.redundant.blib
04 Dec 2022 13:02:40,188 INFO : Expanding BC101613.blib
04 Dec 2022 13:02:40,190 INFO : Expanding PQ500.blib
04 Dec 2022 13:02:40,210 INFO : Expanding T1D_All_Syn_Pep.blib
04 Dec 2022 13:02:40,213 INFO : Expanding T1D_master.blib
04 Dec 2022 13:02:40,223 INFO : Expanding T1D_master.redundant.blib
04 Dec 2022 13:02:40,274 INFO : Expanding PQ5002.blib
04 Dec 2022 13:02:40,293 INFO : Expanding STEM2.blib
04 Dec 2022 13:02:40,298 INFO : Expanding STEM2.redundant.blib
04 Dec 2022 13:02:40,347 INFO : Expanding THIS.blib
04 Dec 2022 13:02:40,354 INFO : Expanding THIS.redundant.blib
04 Dec 2022 13:02:40,364 INFO : Expanding BetaCatenin.blib
04 Dec 2022 13:02:40,365 INFO : Expanding BetaCatenin.redundant.blib
04 Dec 2022 13:02:40,366 INFO : Expanding Sep20Extra.blib
04 Dec 2022 13:02:40,378 INFO : Expanding Sep20Extra.redundant.blib
04 Dec 2022 13:02:40,401 INFO : Expanding Thxrpt.blib
04 Dec 2022 13:02:40,409 INFO : Expanding HIC1_IP_batch_Edit_for_Report_HL.skyd
04 Dec 2022 13:02:40,462 INFO : Expanding HIC1_IP_batch_Edit_for_Report_HL.sky.view
04 Dec 2022 13:02:40,462 INFO : Expanding HIC1_IP_batch_Edit_for_Report_HL.sky
04 Dec 2022 13:02:40,477 INFO : 1% Done
04 Dec 2022 13:02:40,806 INFO : Inserting sp|P04406|G3P_HUMAN
04 Dec 2022 13:02:40,810 INFO : Inserting sp|P18847|ATF3_HUMAN
04 Dec 2022 13:02:40,813 INFO : Inserting sp|Q6W2J9|BCOR_HUMAN
04 Dec 2022 13:02:40,822 INFO : 2% Done
04 Dec 2022 13:02:40,854 INFO : 4% Done
04 Dec 2022 13:02:40,880 INFO : Inserting sp|Q9BZS1|FOXP3_HUMAN
04 Dec 2022 13:02:40,889 INFO : 6% Done
04 Dec 2022 13:02:40,920 INFO : 8% Done
04 Dec 2022 13:02:40,951 INFO : 10% Done
04 Dec 2022 13:02:40,984 INFO : Inserting sp|Q01196|RUNX1_HUMAN
04 Dec 2022 13:02:40,994 INFO : 12% Done
04 Dec 2022 13:02:41,026 INFO : 14% Done
04 Dec 2022 13:02:41,057 INFO : 15% Done
04 Dec 2022 13:02:41,085 INFO : 17% Done
04 Dec 2022 13:02:41,115 INFO : 19% Done
04 Dec 2022 13:02:41,148 INFO : 21% Done
04 Dec 2022 13:02:41,179 INFO : 23% Done
04 Dec 2022 13:02:41,215 INFO : 26% Done
04 Dec 2022 13:02:41,249 INFO : 28% Done
04 Dec 2022 13:02:41,279 INFO : Inserting sp|Q13951|PEBB_HUMAN
04 Dec 2022 13:02:41,287 INFO : 30% Done
04 Dec 2022 13:02:41,313 INFO : 31% Done
04 Dec 2022 13:02:41,351 INFO : 34% Done
04 Dec 2022 13:02:41,404 INFO : 36% Done
04 Dec 2022 13:02:41,433 INFO : Inserting sp|Q9UKT9|IKZF3_HUMAN
04 Dec 2022 13:02:41,442 INFO : 38% Done
04 Dec 2022 13:02:41,490 INFO : 41% Done
04 Dec 2022 13:02:41,530 INFO : 42% Done
04 Dec 2022 13:02:41,562 INFO : 45% Done
04 Dec 2022 13:02:41,591 INFO : Inserting sp|P35222|CTNB1_HUMAN
04 Dec 2022 13:02:41,601 INFO : 47% Done
04 Dec 2022 13:02:41,637 INFO : 49% Done
04 Dec 2022 13:02:41,668 INFO : 51% Done
04 Dec 2022 13:02:41,697 INFO : 53% Done
04 Dec 2022 13:02:41,721 INFO : Inserting sp|Q14526|HIC1_HUMAN
04 Dec 2022 13:02:41,732 INFO : 55% Done
04 Dec 2022 13:02:41,769 INFO : 60% Done
04 Dec 2022 13:02:41,827 INFO : 62% Done
04 Dec 2022 13:02:41,860 INFO : 64% Done
04 Dec 2022 13:02:41,893 INFO : 66% Done
04 Dec 2022 13:02:41,921 INFO : Inserting sp|MSRT1|MSRT1_HUMAN
04 Dec 2022 13:02:41,926 INFO : 67% Done
04 Dec 2022 13:02:41,940 INFO : 68% Done
04 Dec 2022 13:02:41,954 INFO : 69% Done
04 Dec 2022 13:02:41,969 INFO : 70% Done
04 Dec 2022 13:02:41,983 INFO : 71% Done
04 Dec 2022 13:02:41,997 INFO : 72% Done
04 Dec 2022 13:02:42,011 INFO : 73% Done
04 Dec 2022 13:02:42,025 INFO : 74% Done
04 Dec 2022 13:02:42,052 INFO : 75% Done
04 Dec 2022 13:02:42,066 INFO : 76% Done
04 Dec 2022 13:02:42,081 INFO : 77% Done
04 Dec 2022 13:02:42,092 INFO : Inserting tr|C9JTX5|C9JTX5_HUMAN
04 Dec 2022 13:02:42,099 INFO : 78% Done
04 Dec 2022 13:02:42,121 INFO : 80% Done
04 Dec 2022 13:02:42,151 INFO : Done parsing Skyline document.
04 Dec 2022 13:02:42,151 INFO : Calculating iRT correlations for 18 sample(s)
04 Dec 2022 13:02:42,165 INFO : Calculated iRT regression line from full standard list.
04 Dec 2022 13:02:42,171 INFO : Calculated iRT regression line from full standard list.
04 Dec 2022 13:02:42,176 INFO : Calculated iRT regression line from full standard list.
04 Dec 2022 13:02:42,181 INFO : Calculated iRT regression line from full standard list.
04 Dec 2022 13:02:42,186 INFO : Calculated iRT regression line from full standard list.
04 Dec 2022 13:02:42,191 INFO : Calculated iRT regression line from full standard list.
04 Dec 2022 13:02:42,196 INFO : Calculated iRT regression line from full standard list.
04 Dec 2022 13:02:42,201 INFO : Calculated iRT regression line from full standard list.
04 Dec 2022 13:02:42,206 INFO : Calculated iRT regression line from full standard list.
04 Dec 2022 13:02:42,211 INFO : Calculated iRT regression line from full standard list.
04 Dec 2022 13:02:42,216 INFO : Calculated iRT regression line from full standard list.
04 Dec 2022 13:02:42,221 INFO : Calculated iRT regression line from full standard list.
04 Dec 2022 13:02:42,227 INFO : Calculated iRT regression line from full standard list.
04 Dec 2022 13:02:42,232 INFO : Calculated iRT regression line from full standard list.
04 Dec 2022 13:02:42,237 INFO : Calculated iRT regression line from full standard list.
04 Dec 2022 13:02:42,242 INFO : Calculated iRT regression line from full standard list.
04 Dec 2022 13:02:42,247 INFO : Calculated iRT regression line from full standard list.
04 Dec 2022 13:02:42,252 INFO : Calculated iRT regression line from full standard list.
04 Dec 2022 13:02:42,252 INFO : Finished calculating iRT correlations for all samples
04 Dec 2022 13:02:42,303 INFO : Calculating fold changes
04 Dec 2022 13:02:42,834 INFO : 98% Done
04 Dec 2022 13:02:42,834 INFO : Done calculating fold changes.
04 Dec 2022 13:02:42,835 INFO : Creating and populating temp tables for Proportion values
04 Dec 2022 13:02:42,890 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
04 Dec 2022 13:02:42,949 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
04 Dec 2022 13:02:42,972 INFO : Cleaning up temp tables
04 Dec 2022 13:02:43,177 INFO : Completed import of Skyline document from HIC1_IP_batch_Edit_for_Report_HL_2022-12-02_15-31-05.sky.zip
04 Dec 2022 13:02:43,179 INFO : 100% Done
04 Dec 2022 13:02:43,187 INFO : Done importing xar
04 Dec 2022 13:02:43,189 INFO : Loading pages and webpart properties
04 Dec 2022 13:02:43,261 INFO : Done importing 4 page(s) with 7 webpart(s)
04 Dec 2022 13:02:43,262 INFO : Starting Sample Status Data import
04 Dec 2022 13:02:43,262 INFO : No sample types XAR file to process.
04 Dec 2022 13:02:43,262 INFO : Finished importing Sample Status Data
04 Dec 2022 13:02:43,267 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
04 Dec 2022 13:02:43,270 INFO : A row containing [Description: 'null', Color: '800000', Name: 'Reagent Change'] values already exists. Skipping
04 Dec 2022 13:02:43,270 INFO : A row containing [Description: 'null', Color: 'FF0000', Name: 'Instrumentation Change'] values already exists. Skipping
04 Dec 2022 13:02:43,271 INFO : A row containing [Description: 'null', Color: '0000FF', Name: 'Technician Change'] values already exists. Skipping
04 Dec 2022 13:02:43,271 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
04 Dec 2022 13:02:43,271 INFO : Importing files metadata.
04 Dec 2022 13:02:43,330 INFO :
04 Dec 2022 13:02:43,330 INFO : Experiment import completed successfully.
04 Dec 2022 13:02:43,330 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
04 Dec 2022 13:02:43,349 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
04 Dec 2022 13:02:43,349 INFO :
04 Dec 2022 13:02:43,349 INFO : Checking for library folders.
04 Dec 2022 13:02:43,351 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
04 Dec 2022 13:02:43,367 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
04 Dec 2022 13:02:43,367 INFO :
04 Dec 2022 13:02:43,367 INFO : Finishing up experiment copy.
04 Dec 2022 13:02:43,369 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
04 Dec 2022 13:02:43,369 INFO : Setting version on new experiment to 1
04 Dec 2022 13:02:43,369 INFO : Assigning a ProteomeXchange ID.
04 Dec 2022 13:02:43,598 INFO : Assigning a DOI.
04 Dec 2022 13:02:45,176 INFO : Assigned DOI: 10.6069/7d38-pg07
04 Dec 2022 13:02:45,181 INFO : Updating access URL to point to the new copy of the data.
04 Dec 2022 13:02:45,186 INFO : Removing copy permissions given to Panorama Public
04 Dec 2022 13:02:45,195 INFO : Adding read permissions to all users that are folder admins in the source folder.
04 Dec 2022 13:02:45,203 INFO : Updating the 'Raw Data' tab configuration
04 Dec 2022 13:02:45,205 INFO : Updating dataFileUrls for run HIC1_IP_batch_Edit_for_Report_HL_2022-12-02_15-31-05.sky.zip; targetedms run ID 148768
04 Dec 2022 13:02:45,205 INFO : Updating dataFileUrl...
04 Dec 2022 13:02:45,205 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Turku%20Bioscience%20Lahesmaa%20Group%20-%20HIC1%20Interactome%20in%20Treg%20Cells_34e0e560-5644-103b-b846-fea6ddf50e04/_temp__2022-12-04_13-02-15/export/xar/experiments_and_runs.xar.exploded/Run146816/HIC1_IP_batch_Edit_for_Report_HL_2022-12-02_15-31-05/HIC1_IP_batch_Edit_for_Report_HL.skyd
04 Dec 2022 13:02:45,205 INFO : to: file:///data/labkey/files/Panorama%20Public/2022/Turku%20Bioscience%20Lahesmaa%20Group%20-%20HIC1%20Interactome%20in%20Treg%20Cells/@files/HIC1_IP_batch_Edit_for_Report_HL_2022-12-02_15-31-05/HIC1_IP_batch_Edit_for_Report_HL.skyd
04 Dec 2022 13:02:45,207 INFO : Updating dataFileUrl...
04 Dec 2022 13:02:45,207 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Turku%20Bioscience%20Lahesmaa%20Group%20-%20HIC1%20Interactome%20in%20Treg%20Cells_34e0e560-5644-103b-b846-fea6ddf50e04/_temp__2022-12-04_13-02-15/export/xar/experiments_and_runs.xar.exploded/Run146816/HIC1_IP_batch_Edit_for_Report_HL_2022-12-02_15-31-05.sky.zip
04 Dec 2022 13:02:45,207 INFO : to: file:///data/labkey/files/Panorama%20Public/2022/Turku%20Bioscience%20Lahesmaa%20Group%20-%20HIC1%20Interactome%20in%20Treg%20Cells/@files/HIC1_IP_batch_Edit_for_Report_HL_2022-12-02_15-31-05.sky.zip
04 Dec 2022 13:02:45,220 INFO : Creating a reviewer account.
04 Dec 2022 13:02:45,438 INFO : Created reviewer with email: User panorama+reviewer160@proteinms.net
04 Dec 2022 13:02:45,447 INFO : Hiding the Data Pipeline tab.
04 Dec 2022 13:02:45,451 INFO : Updating Submission. Setting copiedExperimentId to 1542
04 Dec 2022 13:02:45,568 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'