16 Feb 2022 00:09:45,034 INFO : Copying experiment "Absolute Protein Quantitation of the Mouse Macrophage Toll-Like Receptor and Chemotaxis Pathways" from folder /NIH_NitaLazar/Manes_BMDM_TLR-Chemotaxis_2021 to /Panorama Public/2022/NIH_NitaLazar - Manes_BMDM_TLR-Chemotaxis_2021
16 Feb 2022 00:09:45,035 INFO : =======================================
16 Feb 2022 00:09:45,142 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
16 Feb 2022 00:09:45,142 INFO :
16 Feb 2022 00:09:45,142 INFO : Exporting experiment.
16 Feb 2022 00:10:04,489 INFO : Exporting files metadata.
16 Feb 2022 00:10:04,489 DEBUG: [/NIH_NitaLazar/Manes_BMDM_TLR-Chemotaxis_2021] Writing files metadata to /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NIH_NitaLazar - Manes_BMDM_TLR-Chemotaxis_2021_b1cbbd3b-712c-103a-93e1-fea6ddf5fdda/_temp__2022-02-16_00-09-44/export
16 Feb 2022 00:10:04,736 INFO :
16 Feb 2022 00:10:04,736 INFO : Experiment export completed successfully.
16 Feb 2022 00:10:04,736 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
16 Feb 2022 00:10:04,773 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
16 Feb 2022 00:10:04,773 INFO :
16 Feb 2022 00:10:04,773 INFO : Importing experiment.
16 Feb 2022 00:10:04,775 DEBUG: [/Panorama Public/2022/NIH_NitaLazar - Manes_BMDM_TLR-Chemotaxis_2021] Importing folder properties from: /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NIH_NitaLazar - Manes_BMDM_TLR-Chemotaxis_2021_b1cbbd3b-712c-103a-93e1-fea6ddf5fdda/_temp__2022-02-16_00-09-44/export
16 Feb 2022 00:10:04,778 INFO : Loading folder properties (folder type, settings and active modules)
16 Feb 2022 00:10:04,778 DEBUG: [/Panorama Public/2022/NIH_NitaLazar - Manes_BMDM_TLR-Chemotaxis_2021] Folder type: Targeted MS
16 Feb 2022 00:10:04,778 DEBUG: [/Panorama Public/2022/NIH_NitaLazar - Manes_BMDM_TLR-Chemotaxis_2021] Active modules: Pipeline, Internal, TargetedMS, Experiment, Issues, Query, Search, PanoramaPublic, Announcements, Core, FileContent, Wiki, Assay, API, MS2
16 Feb 2022 00:10:04,878 INFO : Done importing folder properties (folder type, settings and active modules)
16 Feb 2022 00:10:04,881 INFO : Loading etl definitions
16 Feb 2022 00:10:04,884 INFO : Loading wikis
16 Feb 2022 00:10:04,885 INFO : 0 wikis imported
16 Feb 2022 00:10:04,885 INFO : Done importing wikis
16 Feb 2022 00:10:04,885 INFO : Starting to copy files
16 Feb 2022 00:10:10,239 INFO : Copied 11 files
16 Feb 2022 00:10:10,239 INFO : Ensuring exp.data rows exist for imported files
16 Feb 2022 00:10:10,647 INFO : Starting Sample Type and Data Class import
16 Feb 2022 00:10:10,647 INFO : No types XAR file to process.
16 Feb 2022 00:10:10,648 INFO : Finished importing Sample Types and Data Classes
16 Feb 2022 00:10:10,650 INFO : Loading xar
16 Feb 2022 00:10:13,478 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9917:TargetedMS.ImportSkyZip.Core'
16 Feb 2022 00:10:13,481 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9917:TargetedMS.ImportSkyZip.Output'
16 Feb 2022 00:10:13,484 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9917:TargetedMS.ImportSkyZip'
16 Feb 2022 00:10:13,484 DEBUG: Protocol import complete
16 Feb 2022 00:10:13,487 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-9917:Absolute+Protein+Quantitation+of+the+Mouse+Macrophage+Toll-Like+Receptor+and+Chemotaxis+Pathways'
16 Feb 2022 00:10:13,487 DEBUG: Experiment/Run group import complete
16 Feb 2022 00:10:13,496 DEBUG: Protocol action set import complete
16 Feb 2022 00:10:13,511 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9917:TargetedMS.ImportSkyZip'
16 Feb 2022 00:10:13,522 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9917:368c27a2-6e98-103a-93e1-fea6ddf5fdda'
16 Feb 2022 00:10:13,526 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9917:368c2d4f-6e98-103a-93e1-fea6ddf5fdda'
16 Feb 2022 00:10:13,527 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9917:TargetedMS.ImportSkyZip.Core'
16 Feb 2022 00:10:13,530 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9917:TargetedMS.ImportSkyZip.Output'
16 Feb 2022 00:10:13,531 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9917:368c30bd-6e98-103a-93e1-fea6ddf5fdda'
16 Feb 2022 00:10:13,533 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NIH_NitaLazar%20-%20Manes_BMDM_TLR-Chemotaxis_2021_b1cbbd3b-712c-103a-93e1-fea6ddf5fdda/_temp__2022-02-16_00-09-44/export/xar/experiments_and_runs.xar.exploded/Run128637/Manes%20TLR%20Chemotaxis%202022.sky.zip into the system
16 Feb 2022 00:10:13,535 INFO : Starting import from Manes TLR Chemotaxis 2022.sky.zip
16 Feb 2022 00:10:13,541 INFO : Starting to import Skyline document from Manes TLR Chemotaxis 2022.sky.zip
16 Feb 2022 00:10:13,601 INFO : Expanding iRT_2019-09-23_001.irtdb
16 Feb 2022 00:10:13,602 INFO : Expanding QStdsQEHF_PD20190531A2.blib
16 Feb 2022 00:10:13,689 INFO : Expanding QStdsQEHF_PD20190531B2.blib
16 Feb 2022 00:10:13,695 INFO : Expanding QStdsQEHF_PD20190531C.blib
16 Feb 2022 00:10:13,871 INFO : Expanding Manes TLR Chemotaxis 2022.skyd
16 Feb 2022 00:10:15,630 INFO : Expanding Manes TLR Chemotaxis 2022.sky.view
16 Feb 2022 00:10:15,630 INFO : Expanding Manes TLR Chemotaxis 2022.sky
16 Feb 2022 00:10:15,753 INFO : 1% Done
16 Feb 2022 00:10:17,680 DEBUG: Starting to load chromatogram headers
16 Feb 2022 00:10:17,700 DEBUG: Done loading chromatogram headers
16 Feb 2022 00:10:18,021 INFO : Inserting JPTHMix1-2
16 Feb 2022 00:10:18,272 INFO : 2% Done
16 Feb 2022 00:10:18,793 INFO : 3% Done
16 Feb 2022 00:10:19,251 INFO : 4% Done
16 Feb 2022 00:10:19,722 INFO : 5% Done
16 Feb 2022 00:10:20,210 INFO : 6% Done
16 Feb 2022 00:10:20,664 INFO : 7% Done
16 Feb 2022 00:10:21,165 INFO : 8% Done
16 Feb 2022 00:10:21,633 INFO : 9% Done
16 Feb 2022 00:10:22,020 INFO : 10% Done
16 Feb 2022 00:10:22,535 INFO : 11% Done
16 Feb 2022 00:10:22,923 INFO : 12% Done
16 Feb 2022 00:10:23,432 INFO : 13% Done
16 Feb 2022 00:10:23,525 DEBUG: Inserted 50 peptides
16 Feb 2022 00:10:23,843 INFO : 14% Done
16 Feb 2022 00:10:24,413 INFO : 15% Done
16 Feb 2022 00:10:24,863 INFO : 16% Done
16 Feb 2022 00:10:25,316 DEBUG: Total peptides inserted: 65
16 Feb 2022 00:10:25,316 INFO : Inserting JPTQ3
16 Feb 2022 00:10:25,322 INFO : 17% Done
16 Feb 2022 00:10:25,773 INFO : 18% Done
16 Feb 2022 00:10:26,160 INFO : 19% Done
16 Feb 2022 00:10:26,692 INFO : 20% Done
16 Feb 2022 00:10:27,205 INFO : 21% Done
16 Feb 2022 00:10:27,633 INFO : 22% Done
16 Feb 2022 00:10:28,100 INFO : 23% Done
16 Feb 2022 00:10:28,636 INFO : 24% Done
16 Feb 2022 00:10:29,108 INFO : 25% Done
16 Feb 2022 00:10:29,608 DEBUG: Total peptides inserted: 40
16 Feb 2022 00:10:29,608 INFO : Inserting JPTQ4
16 Feb 2022 00:10:29,849 INFO : 26% Done
16 Feb 2022 00:10:30,321 INFO : 27% Done
16 Feb 2022 00:10:30,732 INFO : 28% Done
16 Feb 2022 00:10:31,259 INFO : 29% Done
16 Feb 2022 00:10:31,688 INFO : 30% Done
16 Feb 2022 00:10:32,141 INFO : 31% Done
16 Feb 2022 00:10:32,626 INFO : 32% Done
16 Feb 2022 00:10:33,009 INFO : 33% Done
16 Feb 2022 00:10:33,574 INFO : 34% Done
16 Feb 2022 00:10:34,010 DEBUG: Total peptides inserted: 40
16 Feb 2022 00:10:34,010 INFO : Inserting JPTQ5
16 Feb 2022 00:10:34,015 INFO : 35% Done
16 Feb 2022 00:10:34,523 INFO : 36% Done
16 Feb 2022 00:10:35,023 INFO : 37% Done
16 Feb 2022 00:10:35,466 INFO : 38% Done
16 Feb 2022 00:10:35,846 INFO : 39% Done
16 Feb 2022 00:10:36,299 INFO : 40% Done
16 Feb 2022 00:10:36,666 INFO : 41% Done
16 Feb 2022 00:10:37,015 INFO : 42% Done
16 Feb 2022 00:10:37,464 DEBUG: Total peptides inserted: 41
16 Feb 2022 00:10:37,464 INFO : Inserting JPTQ6
16 Feb 2022 00:10:37,471 INFO : 43% Done
16 Feb 2022 00:10:38,041 INFO : 44% Done
16 Feb 2022 00:10:38,488 INFO : 45% Done
16 Feb 2022 00:10:38,873 INFO : 46% Done
16 Feb 2022 00:10:39,401 INFO : 47% Done
16 Feb 2022 00:10:39,730 INFO : 48% Done
16 Feb 2022 00:10:40,241 INFO : 49% Done
16 Feb 2022 00:10:40,687 INFO : 50% Done
16 Feb 2022 00:10:41,193 INFO : 51% Done
16 Feb 2022 00:10:41,570 INFO : 52% Done
16 Feb 2022 00:10:42,278 INFO : 53% Done
16 Feb 2022 00:10:42,749 INFO : 54% Done
16 Feb 2022 00:10:43,024 DEBUG: Inserted 50 peptides
16 Feb 2022 00:10:43,138 INFO : 55% Done
16 Feb 2022 00:10:43,339 DEBUG: Total peptides inserted: 52
16 Feb 2022 00:10:43,340 INFO : Inserting JPTQ7
16 Feb 2022 00:10:43,653 INFO : 56% Done
16 Feb 2022 00:10:44,196 INFO : 57% Done
16 Feb 2022 00:10:44,997 INFO : 58% Done
16 Feb 2022 00:10:45,562 INFO : 59% Done
16 Feb 2022 00:10:46,646 INFO : 60% Done
16 Feb 2022 00:10:47,313 INFO : 61% Done
16 Feb 2022 00:10:47,842 DEBUG: Total peptides inserted: 28
16 Feb 2022 00:10:47,842 INFO : Inserting Pierce_LC_RT_Stds
16 Feb 2022 00:10:47,929 INFO : 64% Done
16 Feb 2022 00:10:48,512 INFO : 67% Done
16 Feb 2022 00:10:49,196 INFO : 69% Done
16 Feb 2022 00:10:49,865 INFO : 72% Done
16 Feb 2022 00:10:50,445 INFO : 74% Done
16 Feb 2022 00:10:50,866 INFO : 75% Done
16 Feb 2022 00:10:51,332 INFO : 78% Done
16 Feb 2022 00:10:51,812 INFO : 80% Done
16 Feb 2022 00:10:52,263 INFO : 82% Done
16 Feb 2022 00:10:52,810 INFO : 84% Done
16 Feb 2022 00:10:53,241 INFO : 87% Done
16 Feb 2022 00:10:53,866 INFO : 90% Done
16 Feb 2022 00:10:54,533 INFO : 92% Done
16 Feb 2022 00:10:55,191 INFO : 95% Done
16 Feb 2022 00:10:55,828 INFO : 98% Done
16 Feb 2022 00:10:56,378 DEBUG: Total peptides inserted: 15
16 Feb 2022 00:10:56,379 INFO : Done parsing Skyline document.
16 Feb 2022 00:10:56,379 INFO : Calculating iRT correlations for 266 sample(s)
16 Feb 2022 00:10:56,414 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:56,445 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:56,477 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:56,507 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:56,536 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:56,564 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:56,593 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:56,621 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:56,650 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:56,678 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:56,707 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:56,735 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:56,763 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:56,791 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:56,819 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:56,848 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:56,876 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:56,904 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:56,932 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:56,960 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:56,990 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:57,019 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:57,047 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:57,076 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:57,104 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:57,132 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:57,162 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:57,191 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:57,219 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:57,248 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:57,275 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:57,305 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:57,335 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:57,365 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:57,393 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:57,423 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:57,451 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:57,479 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:57,507 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:57,537 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:57,566 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:57,595 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:57,623 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:57,651 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:57,679 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:57,707 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:57,735 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:57,763 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:57,791 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:57,818 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:57,847 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:57,877 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:57,905 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:57,936 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:57,964 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:57,992 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:58,020 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:58,048 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:58,076 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:58,104 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:58,132 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:58,160 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:58,189 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:58,216 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:58,244 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:58,272 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:58,300 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:58,328 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:58,357 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:58,386 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:58,414 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:58,442 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:58,470 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:58,499 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:58,527 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:58,556 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:58,584 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:58,613 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:58,642 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:58,670 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:58,698 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:58,726 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:58,755 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:58,783 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:58,812 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:58,840 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:58,870 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:58,900 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:58,928 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:58,956 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:58,984 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:59,012 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:59,040 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:59,068 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:59,096 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:59,124 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:59,152 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:59,179 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:59,207 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:59,236 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:59,264 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:59,292 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:59,320 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:59,396 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:59,428 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:59,460 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:59,499 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:59,535 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:59,566 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:59,603 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:59,632 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:59,661 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:59,689 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:59,717 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:59,744 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:59,772 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:59,799 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:59,827 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:59,855 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:59,882 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:59,910 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:59,937 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:59,964 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:10:59,992 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:00,019 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:00,047 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:00,074 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:00,102 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:00,129 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:00,156 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:00,184 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:00,211 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:00,239 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:00,267 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:00,295 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:00,323 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:00,350 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:00,378 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:00,406 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:00,433 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:00,461 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:00,489 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:00,517 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:00,544 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:00,572 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:00,600 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:00,628 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:00,655 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:00,683 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:00,711 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:00,739 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:00,766 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:00,794 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:00,821 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:00,849 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:00,877 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:00,905 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:00,933 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:00,961 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:00,989 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:01,016 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:01,044 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:01,072 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:01,100 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:01,127 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:01,155 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:01,183 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:01,211 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:01,238 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:01,266 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:01,294 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:01,322 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:01,350 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:01,378 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:01,406 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:01,434 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:01,462 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:01,490 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:01,519 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:01,547 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:01,575 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:01,605 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:01,635 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:01,663 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:01,693 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:01,721 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:01,751 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:01,779 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:01,807 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:01,836 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:01,864 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:01,893 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:01,923 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:01,952 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:01,980 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:02,009 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:02,038 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:02,067 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:02,096 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:02,125 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:02,154 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:02,182 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:02,210 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:02,239 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:02,268 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:02,298 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:02,327 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:02,355 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:02,385 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:02,414 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:02,443 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:02,472 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:02,501 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:02,532 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:02,560 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:02,588 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:02,616 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:02,644 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:02,672 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:02,702 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:02,730 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:02,758 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:02,786 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:02,813 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:02,841 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:02,869 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:02,897 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:02,924 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:02,952 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:02,979 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:03,007 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:03,034 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:03,063 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:03,093 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:03,122 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:03,151 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:03,179 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:03,206 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:03,234 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:03,262 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:03,289 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:03,317 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:03,345 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:03,372 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:03,400 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:03,428 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:03,456 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:03,484 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:03,511 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:03,539 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:03,567 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:03,594 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:03,622 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:03,649 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:03,677 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:03,705 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:03,732 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:03,760 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:03,789 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:03,816 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:03,844 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:03,871 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:03,900 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:03,927 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:03,955 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:03,982 INFO : Calculated iRT regression line from full standard list.
16 Feb 2022 00:11:03,983 INFO : Finished calculating iRT correlations for all samples
16 Feb 2022 00:11:03,984 INFO : Creating and populating temp tables for Proportion values
16 Feb 2022 00:11:04,104 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
16 Feb 2022 00:11:04,661 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
16 Feb 2022 00:11:04,904 INFO : Cleaning up temp tables
16 Feb 2022 00:11:05,183 INFO : Completed import of Skyline document from Manes TLR Chemotaxis 2022.sky.zip
16 Feb 2022 00:11:05,186 INFO : 100% Done
16 Feb 2022 00:11:05,191 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NIH_NitaLazar%20-%20Manes_BMDM_TLR-Chemotaxis_2021_b1cbbd3b-712c-103a-93e1-fea6ddf5fdda/_temp__2022-02-16_00-09-44/export/xar/experiments_and_runs.xar.exploded/Run128637/Manes%20TLR%20Chemotaxis%202022.sky.zip into the system
16 Feb 2022 00:11:05,192 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NIH_NitaLazar%20-%20Manes_BMDM_TLR-Chemotaxis_2021_b1cbbd3b-712c-103a-93e1-fea6ddf5fdda/_temp__2022-02-16_00-09-44/export/xar/experiments_and_runs.xar.exploded/Run128637/Manes%20TLR%20Chemotaxis%202022/Manes%20TLR%20Chemotaxis%202022.skyd into the system
16 Feb 2022 00:11:05,192 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NIH_NitaLazar%20-%20Manes_BMDM_TLR-Chemotaxis_2021_b1cbbd3b-712c-103a-93e1-fea6ddf5fdda/_temp__2022-02-16_00-09-44/export/xar/experiments_and_runs.xar.exploded/Run128637/Manes%20TLR%20Chemotaxis%202022/Manes%20TLR%20Chemotaxis%202022.skyd into the system
16 Feb 2022 00:11:05,199 INFO : Done importing xar
16 Feb 2022 00:11:05,201 INFO : Loading pages and webpart properties
16 Feb 2022 00:11:05,293 INFO : Done importing 4 page(s) with 7 webpart(s)
16 Feb 2022 00:11:05,293 INFO : Importing files metadata.
16 Feb 2022 00:11:05,294 DEBUG: [/Panorama Public/2022/NIH_NitaLazar - Manes_BMDM_TLR-Chemotaxis_2021] Reading files metadata from /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NIH_NitaLazar - Manes_BMDM_TLR-Chemotaxis_2021_b1cbbd3b-712c-103a-93e1-fea6ddf5fdda/_temp__2022-02-16_00-09-44/export
16 Feb 2022 00:11:05,294 INFO :
16 Feb 2022 00:11:05,295 INFO : Experiment import completed successfully.
16 Feb 2022 00:11:05,295 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
16 Feb 2022 00:11:05,368 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.UpdateFolderTypeTask' at location 'webserver-high-priority'
16 Feb 2022 00:11:05,368 INFO :
16 Feb 2022 00:11:05,369 INFO : Updating the folder type.
16 Feb 2022 00:11:05,372 INFO : Setting the TargetedMS folder type to 'Experimental Data' for folder '/Panorama Public/2022/NIH_NitaLazar - Manes_BMDM_TLR-Chemotaxis_2021'.
16 Feb 2022 00:11:05,375 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.UpdateFolderTypeTask'
16 Feb 2022 00:11:05,409 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
16 Feb 2022 00:11:05,409 INFO :
16 Feb 2022 00:11:05,410 INFO : Finishing up experiment copy.
16 Feb 2022 00:11:05,413 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
16 Feb 2022 00:11:05,414 INFO : Setting version on new experiment to 1
16 Feb 2022 00:11:05,414 INFO : Assigning a ProteomeXchange ID.
16 Feb 2022 00:11:05,863 INFO : Assigning a DOI.
16 Feb 2022 00:11:07,183 INFO : Assigned DOI: 10.6069/44s8-9f68
16 Feb 2022 00:11:07,192 INFO : Updating access URL to point to the new copy of the data.
16 Feb 2022 00:11:07,198 INFO : Removing copy permissions given to Panorama Public
16 Feb 2022 00:11:07,219 INFO : Adding read permissions to all users that are folder admins in the source folder.
16 Feb 2022 00:11:07,229 INFO : Updating the 'Raw Data' tab configuration
16 Feb 2022 00:11:07,232 INFO : Updating dataFileUrls for run Manes TLR Chemotaxis 2022.sky.zip; targetedms run ID 131522
16 Feb 2022 00:11:07,233 INFO : Updating dataFileUrl...
16 Feb 2022 00:11:07,233 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NIH_NitaLazar%20-%20Manes_BMDM_TLR-Chemotaxis_2021_b1cbbd3b-712c-103a-93e1-fea6ddf5fdda/_temp__2022-02-16_00-09-44/export/xar/experiments_and_runs.xar.exploded/Run128637/Manes%20TLR%20Chemotaxis%202022.sky.zip
16 Feb 2022 00:11:07,233 INFO : to: file:///data/labkey/files/Panorama%20Public/2022/NIH_NitaLazar%20-%20Manes_BMDM_TLR-Chemotaxis_2021/@files/Manes%20TLR%20Chemotaxis%202022.sky.zip
16 Feb 2022 00:11:07,235 INFO : Updating dataFileUrl...
16 Feb 2022 00:11:07,236 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/NIH_NitaLazar%20-%20Manes_BMDM_TLR-Chemotaxis_2021_b1cbbd3b-712c-103a-93e1-fea6ddf5fdda/_temp__2022-02-16_00-09-44/export/xar/experiments_and_runs.xar.exploded/Run128637/Manes%20TLR%20Chemotaxis%202022/Manes%20TLR%20Chemotaxis%202022.skyd
16 Feb 2022 00:11:07,236 INFO : to: file:///data/labkey/files/Panorama%20Public/2022/NIH_NitaLazar%20-%20Manes_BMDM_TLR-Chemotaxis_2021/@files/Manes%20TLR%20Chemotaxis%202022/Manes%20TLR%20Chemotaxis%202022.skyd
16 Feb 2022 00:11:07,239 INFO : Creating a reviewer account.
16 Feb 2022 00:11:07,473 INFO : Created reviewer with email: User panorama+reviewer105@proteinms.net
16 Feb 2022 00:11:07,485 INFO : Hiding the Data Pipeline tab.
16 Feb 2022 00:11:07,489 INFO : Updating Submission. Setting copiedExperimentId to 1399
16 Feb 2022 00:11:07,599 INFO : Emailing submitter.
16 Feb 2022 00:11:07,754 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'