03 May 2022 22:29:11,552 INFO : Copying experiment "Overcoming the protease-bias in quantitative proteomics" from folder /KTH - Uhlen Lab/Multiple Proteases to /Panorama Public/2022/KTH Uhlen Lab - Multiple Proteases
03 May 2022 22:29:11,553 INFO : =======================================
03 May 2022 22:29:11,721 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
03 May 2022 22:29:11,721 INFO :
03 May 2022 22:29:11,721 INFO : Exporting experiment.
03 May 2022 22:31:52,733 INFO : Exporting files metadata.
03 May 2022 22:31:52,733 DEBUG: [/KTH - Uhlen Lab/Multiple Proteases] Writing files metadata to /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH Uhlen Lab - Multiple Proteases_f6fea2bc-ad98-103a-afa7-fea6ddf55ba2/_temp__2022-05-03_22-29-10/export
03 May 2022 22:31:52,840 INFO :
03 May 2022 22:31:52,840 INFO : Experiment export completed successfully.
03 May 2022 22:31:52,840 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
03 May 2022 22:32:30,308 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
03 May 2022 22:32:30,308 INFO :
03 May 2022 22:32:30,308 INFO : Importing experiment.
03 May 2022 22:32:30,310 DEBUG: [/Panorama Public/2022/KTH Uhlen Lab - Multiple Proteases] Importing folder properties from: /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH Uhlen Lab - Multiple Proteases_f6fea2bc-ad98-103a-afa7-fea6ddf55ba2/_temp__2022-05-03_22-29-10/export
03 May 2022 22:32:30,352 INFO : Loading folder properties (folder type, settings and active modules)
03 May 2022 22:32:30,352 DEBUG: [/Panorama Public/2022/KTH Uhlen Lab - Multiple Proteases] Folder type: Targeted MS
03 May 2022 22:32:30,352 DEBUG: [/Panorama Public/2022/KTH Uhlen Lab - Multiple Proteases] Active modules: Experiment, FileContent, Pipeline, PanoramaPublic, Query, Internal, API, Core, Search, MS2, Announcements, Wiki, TargetedMS, Issues, Assay
03 May 2022 22:32:30,414 INFO : Done importing folder properties (folder type, settings and active modules)
03 May 2022 22:32:30,457 INFO : Loading etl definitions
03 May 2022 22:32:30,499 INFO : Loading wikis
03 May 2022 22:32:30,500 INFO : 0 wikis imported
03 May 2022 22:32:30,500 INFO : Done importing wikis
03 May 2022 22:32:30,500 INFO : Starting to copy files
03 May 2022 22:34:37,159 INFO : 290 files copied, now copying 211108_AllTargets_Lysarginase_select_top10_quantification_Cleaned_top5.skyl
03 May 2022 22:34:37,438 INFO : 293 files copied, now copying 220124_PrESTAssays_ArgC_select_top10.skyl
03 May 2022 22:34:37,547 INFO : 299 files copied, now copying 211123_AllTargets_Chymotrypsin_select_top10_quantification_cleaned_top5.sky.view
03 May 2022 22:34:41,558 INFO : 307 files copied, now copying 220124_PrEST_Assays_Chymotrypsin_select_top10.sky
03 May 2022 22:34:41,700 INFO : 313 files copied, now copying 220124_PrEST_Assays_GluC_select_top10.sky.view
03 May 2022 22:34:42,385 INFO : 319 files copied, now copying 220124_PrEST_Assays_ArgC_select_top10.skyl
03 May 2022 22:34:42,430 INFO : 325 files copied, now copying 220124_PrESTAssays_ArgC_select_top10.skyl
03 May 2022 22:34:42,442 INFO : 331 files copied, now copying 220124_PrESTAssays_Chymotrypsin_select_top10.skyd
03 May 2022 22:34:42,555 INFO : 338 files copied, now copying 220124_PrESTAssays_LysC_select_top10.skyd
03 May 2022 22:34:42,715 INFO : 344 files copied, now copying 220124_PrESTAssays_Trypsin_select_top10.sky.view
03 May 2022 22:34:42,916 INFO : 351 files copied, now copying 211119_AllTargets_Trypsin_select_top10_quantification_cleaned_top5.sky.view
03 May 2022 22:34:48,616 INFO : 361 files copied, now copying 211103_AllTargets_LysC_select_top10_quantification_cleaned_top5.sky
03 May 2022 22:34:53,703 INFO : 369 files copied, now copying 220124_PrESTAssays_Lysarginase_select_top10.sky.view
03 May 2022 22:34:53,852 INFO : 376 files copied, now copying 220124_PrESTAssays_ArgC_select_top10.skyl
03 May 2022 22:34:53,864 INFO : 382 files copied, now copying 220124_PrESTAssays_LysC_select_top10.skyd
03 May 2022 22:34:54,047 INFO : Copied 388 files
03 May 2022 22:34:54,047 INFO : Ensuring exp.data rows exist for imported files
03 May 2022 22:34:55,682 INFO : Starting Sample Type and Data Class import
03 May 2022 22:34:55,682 INFO : No types XAR file to process.
03 May 2022 22:34:55,682 INFO : Finished importing Sample Types and Data Classes
03 May 2022 22:34:55,724 INFO : Loading xar
03 May 2022 22:34:58,232 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-10328:TargetedMS.ImportSkyZip'
03 May 2022 22:34:58,233 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-10328:TargetedMS.ImportSkyZip.Core'
03 May 2022 22:34:58,235 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-10328:TargetedMS.ImportSkyZip.Output'
03 May 2022 22:34:58,235 DEBUG: Protocol import complete
03 May 2022 22:34:58,236 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-10328:Overcoming+the+protease-bias+in+quantitative+proteomics'
03 May 2022 22:34:58,236 DEBUG: Experiment/Run group import complete
03 May 2022 22:34:58,243 DEBUG: Protocol action set import complete
03 May 2022 22:34:58,251 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-10328:TargetedMS.ImportSkyZip'
03 May 2022 22:34:58,257 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-10328:0919b5c7-64c5-103a-93e1-fea6ddf5fdda'
03 May 2022 22:34:58,260 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-10328:0919b196-64c5-103a-93e1-fea6ddf5fdda'
03 May 2022 22:34:58,260 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-10328:TargetedMS.ImportSkyZip.Core'
03 May 2022 22:34:58,262 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-10328:TargetedMS.ImportSkyZip.Output'
03 May 2022 22:34:58,263 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-10328:0919b5e5-64c5-103a-93e1-fea6ddf5fdda'
03 May 2022 22:34:58,269 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-10328:TargetedMS.ImportSkyZip'
03 May 2022 22:34:58,273 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-10328:0919cc0c-64c5-103a-93e1-fea6ddf5fdda'
03 May 2022 22:34:58,276 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-10328:0919cbf4-64c5-103a-93e1-fea6ddf5fdda'
03 May 2022 22:34:58,276 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-10328:TargetedMS.ImportSkyZip.Core'
03 May 2022 22:34:58,278 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-10328:TargetedMS.ImportSkyZip.Output'
03 May 2022 22:34:58,278 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-10328:0919cc43-64c5-103a-93e1-fea6ddf5fdda'
03 May 2022 22:34:58,281 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20Multiple%20Proteases_f6fea2bc-ad98-103a-afa7-fea6ddf55ba2/_temp__2022-05-03_22-29-10/export/xar/experiments_and_runs.xar.exploded/Run126895/211108_AllTargets_ArgC_select_top10_quantification_cleaned_top5_2022-01-31_14-11-04/211108_AllTargets_ArgC_select_top10_quantification_cleaned_top5.skyd into the system
03 May 2022 22:34:58,281 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20Multiple%20Proteases_f6fea2bc-ad98-103a-afa7-fea6ddf55ba2/_temp__2022-05-03_22-29-10/export/xar/experiments_and_runs.xar.exploded/Run126895/211108_AllTargets_ArgC_select_top10_quantification_cleaned_top5_2022-01-31_14-11-04/211108_AllTargets_ArgC_select_top10_quantification_cleaned_top5.skyd into the system
03 May 2022 22:34:58,281 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20Multiple%20Proteases_f6fea2bc-ad98-103a-afa7-fea6ddf55ba2/_temp__2022-05-03_22-29-10/export/xar/experiments_and_runs.xar.exploded/Run126895/211108_AllTargets_ArgC_select_top10_quantification_cleaned_top5_2022-01-31_14-11-04.sky.zip into the system
03 May 2022 22:34:58,282 INFO : Starting import from 211108_AllTargets_ArgC_select_top10_quantification_cleaned_top5_2022-01-31_14-11-04.sky.zip
03 May 2022 22:34:58,285 INFO : Starting to import Skyline document from 211108_AllTargets_ArgC_select_top10_quantification_cleaned_top5_2022-01-31_14-11-04.sky.zip
03 May 2022 22:34:58,286 INFO : Expanding uniprot-proteome_UP000005640.protdb
03 May 2022 22:35:01,403 INFO : Expanding Collision_Energy_ArgC.optdb
03 May 2022 22:35:01,404 INFO : Expanding ArgC_rev12.clib
03 May 2022 22:35:01,420 INFO : Expanding 211108_AllTargets_ArgC_select_top10_quantification_cleaned_top5.skyd
03 May 2022 22:35:01,429 INFO : Expanding 211108_AllTargets_ArgC_select_top10_quantification_cleaned_top5.sky.view
03 May 2022 22:35:01,429 INFO : Expanding 211108_AllTargets_ArgC_select_top10_quantification_cleaned_top5.sky
03 May 2022 22:35:01,430 INFO : Expanding 211108_AllTargets_ArgC_select_top10_quantification_cleaned_top5.skyl
03 May 2022 22:35:01,487 INFO : 13% Done
03 May 2022 22:35:01,506 DEBUG: Starting to load chromatogram headers
03 May 2022 22:35:01,507 DEBUG: Done loading chromatogram headers
03 May 2022 22:35:01,671 INFO : 20% Done
03 May 2022 22:35:01,672 INFO : Inserting HPRR1920016
03 May 2022 22:35:01,673 INFO : Inserting HPRR350088
03 May 2022 22:35:01,719 INFO : 59% Done
03 May 2022 22:35:01,752 DEBUG: Total peptides inserted: 1
03 May 2022 22:35:01,753 INFO : Inserting HPRR3450265
03 May 2022 22:35:01,798 INFO : 98% Done
03 May 2022 22:35:01,823 DEBUG: Total peptides inserted: 1
03 May 2022 22:35:01,824 INFO : Done parsing Skyline document.
03 May 2022 22:35:04,713 INFO : Creating and populating temp tables for Proportion values
03 May 2022 22:35:04,755 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
03 May 2022 22:35:04,758 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
03 May 2022 22:35:04,760 INFO : Cleaning up temp tables
03 May 2022 22:35:04,973 INFO : Completed import of Skyline document from 211108_AllTargets_ArgC_select_top10_quantification_cleaned_top5_2022-01-31_14-11-04.sky.zip
03 May 2022 22:35:05,017 INFO : 100% Done
03 May 2022 22:35:05,021 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20Multiple%20Proteases_f6fea2bc-ad98-103a-afa7-fea6ddf55ba2/_temp__2022-05-03_22-29-10/export/xar/experiments_and_runs.xar.exploded/Run126895/211108_AllTargets_ArgC_select_top10_quantification_cleaned_top5_2022-01-31_14-11-04.sky.zip into the system
03 May 2022 22:35:05,021 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20Multiple%20Proteases_f6fea2bc-ad98-103a-afa7-fea6ddf55ba2/_temp__2022-05-03_22-29-10/export/xar/experiments_and_runs.xar.exploded/Run126897/211123_AllTargets_Chymotrypsin_select_top10_quantification_cleaned_top5_2022-01-31_14-21-55/211123_AllTargets_Chymotrypsin_select_top10_quantification_cleaned_top5.skyd into the system
03 May 2022 22:35:05,021 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20Multiple%20Proteases_f6fea2bc-ad98-103a-afa7-fea6ddf55ba2/_temp__2022-05-03_22-29-10/export/xar/experiments_and_runs.xar.exploded/Run126897/211123_AllTargets_Chymotrypsin_select_top10_quantification_cleaned_top5_2022-01-31_14-21-55/211123_AllTargets_Chymotrypsin_select_top10_quantification_cleaned_top5.skyd into the system
03 May 2022 22:35:05,021 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20Multiple%20Proteases_f6fea2bc-ad98-103a-afa7-fea6ddf55ba2/_temp__2022-05-03_22-29-10/export/xar/experiments_and_runs.xar.exploded/Run126897/211123_AllTargets_Chymotrypsin_select_top10_quantification_cleaned_top5_2022-01-31_14-21-55.sky.zip into the system
03 May 2022 22:35:05,022 INFO : Starting import from 211123_AllTargets_Chymotrypsin_select_top10_quantification_cleaned_top5_2022-01-31_14-21-55.sky.zip
03 May 2022 22:35:05,024 INFO : Starting to import Skyline document from 211123_AllTargets_Chymotrypsin_select_top10_quantification_cleaned_top5_2022-01-31_14-21-55.sky.zip
03 May 2022 22:35:05,026 INFO : Expanding uniprot-proteome_UP000005640.protdb
03 May 2022 22:35:08,139 INFO : Expanding iRT_QTag_Chymotrypsin_calculator.irtdb
03 May 2022 22:35:08,140 INFO : Expanding Collision_Energy_Chymotrypsin.optdb
03 May 2022 22:35:08,141 INFO : Expanding Chymotrypsin_rev11.clib
03 May 2022 22:35:08,158 INFO : Expanding 211123_AllTargets_Chymotrypsin_select_top10_quantification_cleaned_top5.skyd
03 May 2022 22:35:08,183 INFO : Expanding 211123_AllTargets_Chymotrypsin_select_top10_quantification_cleaned_top5.sky.view
03 May 2022 22:35:08,183 INFO : Expanding 211123_AllTargets_Chymotrypsin_select_top10_quantification_cleaned_top5.sky
03 May 2022 22:35:08,184 INFO : Expanding 211123_AllTargets_Chymotrypsin_select_top10_quantification_cleaned_top5.skyl
03 May 2022 22:35:08,241 INFO : 5% Done
03 May 2022 22:35:08,280 DEBUG: Starting to load chromatogram headers
03 May 2022 22:35:08,281 DEBUG: Done loading chromatogram headers
03 May 2022 22:35:08,486 INFO : Inserting HPRR350088
03 May 2022 22:35:08,529 INFO : 15% Done
03 May 2022 22:35:08,593 INFO : 23% Done
03 May 2022 22:35:08,612 DEBUG: Total peptides inserted: 2
03 May 2022 22:35:08,654 INFO : 24% Done
03 May 2022 22:35:08,654 INFO : Inserting HPRR1820017
03 May 2022 22:35:08,698 INFO : 34% Done
03 May 2022 22:35:08,720 DEBUG: Total peptides inserted: 1
03 May 2022 22:35:08,721 INFO : Inserting HPRR3450265
03 May 2022 22:35:08,766 INFO : 48% Done
03 May 2022 22:35:08,834 INFO : 60% Done
03 May 2022 22:35:08,902 INFO : 73% Done
03 May 2022 22:35:08,927 DEBUG: Total peptides inserted: 3
03 May 2022 22:35:08,928 INFO : Inserting HPRR3761208
03 May 2022 22:35:08,972 INFO : 86% Done
03 May 2022 22:35:09,039 INFO : 98% Done
03 May 2022 22:35:09,064 DEBUG: Total peptides inserted: 2
03 May 2022 22:35:09,064 INFO : Done parsing Skyline document.
03 May 2022 22:35:09,065 INFO : Calculating iRT correlations for 9 sample(s)
03 May 2022 22:35:09,067 INFO : Attempting to calculate iRT regression line from shared peptides.
03 May 2022 22:35:09,068 INFO : Attempting to calculate iRT regression line from shared peptides.
03 May 2022 22:35:09,068 INFO : Attempting to calculate iRT regression line from shared peptides.
03 May 2022 22:35:09,069 INFO : Attempting to calculate iRT regression line from shared peptides.
03 May 2022 22:35:09,070 INFO : Attempting to calculate iRT regression line from shared peptides.
03 May 2022 22:35:09,071 INFO : Attempting to calculate iRT regression line from shared peptides.
03 May 2022 22:35:09,071 INFO : Attempting to calculate iRT regression line from shared peptides.
03 May 2022 22:35:09,072 INFO : Attempting to calculate iRT regression line from shared peptides.
03 May 2022 22:35:09,073 INFO : Attempting to calculate iRT regression line from shared peptides.
03 May 2022 22:35:09,073 INFO : Finished calculating iRT correlations for all samples
03 May 2022 22:35:12,254 INFO : Creating and populating temp tables for Proportion values
03 May 2022 22:35:12,279 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
03 May 2022 22:35:12,288 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
03 May 2022 22:35:12,291 INFO : Cleaning up temp tables
03 May 2022 22:35:12,482 INFO : Completed import of Skyline document from 211123_AllTargets_Chymotrypsin_select_top10_quantification_cleaned_top5_2022-01-31_14-21-55.sky.zip
03 May 2022 22:35:12,524 INFO : 100% Done
03 May 2022 22:35:12,528 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20Multiple%20Proteases_f6fea2bc-ad98-103a-afa7-fea6ddf55ba2/_temp__2022-05-03_22-29-10/export/xar/experiments_and_runs.xar.exploded/Run126897/211123_AllTargets_Chymotrypsin_select_top10_quantification_cleaned_top5_2022-01-31_14-21-55.sky.zip into the system
03 May 2022 22:35:12,536 INFO : Done importing xar
03 May 2022 22:35:12,577 INFO : Loading pages and webpart properties
03 May 2022 22:35:12,648 INFO : Done importing 4 page(s) with 6 webpart(s)
03 May 2022 22:35:12,690 INFO : Starting Sample Status Data import
03 May 2022 22:35:12,690 INFO : No sample types XAR file to process.
03 May 2022 22:35:12,690 INFO : Finished importing Sample Status Data
03 May 2022 22:35:12,690 INFO : Importing files metadata.
03 May 2022 22:35:12,690 DEBUG: [/Panorama Public/2022/KTH Uhlen Lab - Multiple Proteases] Reading files metadata from /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH Uhlen Lab - Multiple Proteases_f6fea2bc-ad98-103a-afa7-fea6ddf55ba2/_temp__2022-05-03_22-29-10/export
03 May 2022 22:35:12,691 INFO :
03 May 2022 22:35:12,691 INFO : Experiment import completed successfully.
03 May 2022 22:35:12,691 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
03 May 2022 22:35:12,832 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.UpdateFolderTypeTask' at location 'webserver-high-priority'
03 May 2022 22:35:12,832 INFO :
03 May 2022 22:35:12,832 INFO : Updating the folder type.
03 May 2022 22:35:12,833 INFO : Setting the TargetedMS folder type to 'Experimental Data' for folder '/Panorama Public/2022/KTH Uhlen Lab - Multiple Proteases'.
03 May 2022 22:35:12,835 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.UpdateFolderTypeTask'
03 May 2022 22:35:12,974 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
03 May 2022 22:35:12,974 INFO :
03 May 2022 22:35:12,974 INFO : Finishing up experiment copy.
03 May 2022 22:35:12,976 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
03 May 2022 22:35:12,976 INFO : Setting version on new experiment to 1
03 May 2022 22:35:12,976 INFO : Assigning a ProteomeXchange ID.
03 May 2022 22:35:13,940 INFO : Assigning a DOI.
03 May 2022 22:35:15,093 INFO : Assigned DOI: 10.6069/6pyn-aw16
03 May 2022 22:35:15,097 INFO : Updating access URL to point to the new copy of the data.
03 May 2022 22:35:15,100 INFO : Removing copy permissions given to Panorama Public
03 May 2022 22:35:15,110 INFO : Adding read permissions to all users that are folder admins in the source folder.
03 May 2022 22:35:15,115 INFO : Updating the 'Raw Data' tab configuration
03 May 2022 22:35:15,117 INFO : Updating dataFileUrls for run 211108_AllTargets_ArgC_select_top10_quantification_cleaned_top5_2022-01-31_14-11-04.sky.zip; targetedms run ID 136971
03 May 2022 22:35:15,117 INFO : Updating dataFileUrl...
03 May 2022 22:35:15,118 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20Multiple%20Proteases_f6fea2bc-ad98-103a-afa7-fea6ddf55ba2/_temp__2022-05-03_22-29-10/export/xar/experiments_and_runs.xar.exploded/Run126895/211108_AllTargets_ArgC_select_top10_quantification_cleaned_top5_2022-01-31_14-11-04/211108_AllTargets_ArgC_select_top10_quantification_cleaned_top5.skyd
03 May 2022 22:35:15,118 INFO : to: file:///data/labkey/files/Panorama%20Public/2022/KTH%20Uhlen%20Lab%20-%20Multiple%20Proteases/@files/211108_AllTargets_ArgC_select_top10_quantification_cleaned_top5_2022-01-31_14-11-04/211108_AllTargets_ArgC_select_top10_quantification_cleaned_top5.skyd
03 May 2022 22:35:15,119 INFO : Updating dataFileUrl...
03 May 2022 22:35:15,119 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20Multiple%20Proteases_f6fea2bc-ad98-103a-afa7-fea6ddf55ba2/_temp__2022-05-03_22-29-10/export/xar/experiments_and_runs.xar.exploded/Run126895/211108_AllTargets_ArgC_select_top10_quantification_cleaned_top5_2022-01-31_14-11-04.sky.zip
03 May 2022 22:35:15,119 INFO : to: file:///data/labkey/files/Panorama%20Public/2022/KTH%20Uhlen%20Lab%20-%20Multiple%20Proteases/@files/211108_AllTargets_ArgC_select_top10_quantification_cleaned_top5_2022-01-31_14-11-04.sky.zip
03 May 2022 22:35:15,122 INFO : Updating dataFileUrls for run 211123_AllTargets_Chymotrypsin_select_top10_quantification_cleaned_top5_2022-01-31_14-21-55.sky.zip; targetedms run ID 136972
03 May 2022 22:35:15,122 INFO : Updating dataFileUrl...
03 May 2022 22:35:15,122 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20Multiple%20Proteases_f6fea2bc-ad98-103a-afa7-fea6ddf55ba2/_temp__2022-05-03_22-29-10/export/xar/experiments_and_runs.xar.exploded/Run126897/211123_AllTargets_Chymotrypsin_select_top10_quantification_cleaned_top5_2022-01-31_14-21-55.sky.zip
03 May 2022 22:35:15,122 INFO : to: file:///data/labkey/files/Panorama%20Public/2022/KTH%20Uhlen%20Lab%20-%20Multiple%20Proteases/@files/211123_AllTargets_Chymotrypsin_select_top10_quantification_cleaned_top5_2022-01-31_14-21-55.sky.zip
03 May 2022 22:35:15,123 INFO : Updating dataFileUrl...
03 May 2022 22:35:15,123 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KTH%20Uhlen%20Lab%20-%20Multiple%20Proteases_f6fea2bc-ad98-103a-afa7-fea6ddf55ba2/_temp__2022-05-03_22-29-10/export/xar/experiments_and_runs.xar.exploded/Run126897/211123_AllTargets_Chymotrypsin_select_top10_quantification_cleaned_top5_2022-01-31_14-21-55/211123_AllTargets_Chymotrypsin_select_top10_quantification_cleaned_top5.skyd
03 May 2022 22:35:15,123 INFO : to: file:///data/labkey/files/Panorama%20Public/2022/KTH%20Uhlen%20Lab%20-%20Multiple%20Proteases/@files/211123_AllTargets_Chymotrypsin_select_top10_quantification_cleaned_top5_2022-01-31_14-21-55/211123_AllTargets_Chymotrypsin_select_top10_quantification_cleaned_top5.skyd
03 May 2022 22:35:15,126 INFO : Creating a reviewer account.
03 May 2022 22:35:15,329 INFO : Created reviewer with email: User panorama+reviewer121@proteinms.net
03 May 2022 22:35:15,337 INFO : Hiding the Data Pipeline tab.
03 May 2022 22:35:15,341 INFO : Updating Submission. Setting copiedExperimentId to 1440
03 May 2022 22:35:15,426 INFO : Emailing submitter.
03 May 2022 22:35:15,521 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'