23 Aug 2022 14:35:09,438 INFO : Copying experiment "Absolute and relative quantitation of ATI in modified wheat" from folder /KIT - Food Chemistry/Absolute and relative quantititation of ATIs in modified wheat to /Panorama Public/2022/KIT Food Chemistry - Absolute and relative quantititation of ATIs in modified wheat
23 Aug 2022 14:35:09,438 INFO : =======================================
23 Aug 2022 14:35:09,482 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
23 Aug 2022 14:35:09,482 INFO :
23 Aug 2022 14:35:09,482 INFO : Exporting experiment.
23 Aug 2022 14:37:09,271 INFO : Exporting files metadata.
23 Aug 2022 14:37:09,271 DEBUG: [/KIT - Food Chemistry/Absolute and relative quantititation of ATIs in modified wheat] Writing files metadata to /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KIT Food Chemistry - Absolute and relative quantititation of ATIs in modified wheat_767936d0-0557-103b-adec-fea6ddf58494/_temp__2022-08-23_14-35-09/export
23 Aug 2022 14:37:09,273 DEBUG: [/KIT - Food Chemistry/Absolute and relative quantititation of ATIs in modified wheat/Absolute quantitation] Writing files metadata to /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KIT Food Chemistry - Absolute and relative quantititation of ATIs in modified wheat_767936d0-0557-103b-adec-fea6ddf58494/_temp__2022-08-23_14-35-09/export/subfolders/Absolute quantitation
23 Aug 2022 14:37:09,311 DEBUG: [/KIT - Food Chemistry/Absolute and relative quantititation of ATIs in modified wheat/Relative quantitation using Skyline] Writing files metadata to /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KIT Food Chemistry - Absolute and relative quantititation of ATIs in modified wheat_767936d0-0557-103b-adec-fea6ddf58494/_temp__2022-08-23_14-35-09/export/subfolders/Relative quantitation using Skyline
23 Aug 2022 14:37:09,325 INFO :
23 Aug 2022 14:37:09,325 INFO : Experiment export completed successfully.
23 Aug 2022 14:37:09,325 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
23 Aug 2022 14:37:09,352 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
23 Aug 2022 14:37:09,352 INFO :
23 Aug 2022 14:37:09,352 INFO : Importing experiment.
23 Aug 2022 14:37:09,354 DEBUG: [/Panorama Public/2022/KIT Food Chemistry - Absolute and relative quantititation of ATIs in modified wheat] Importing folder properties from: /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KIT Food Chemistry - Absolute and relative quantititation of ATIs in modified wheat_767936d0-0557-103b-adec-fea6ddf58494/_temp__2022-08-23_14-35-09/export
23 Aug 2022 14:37:09,355 INFO : Loading folder properties (folder type, settings and active modules)
23 Aug 2022 14:37:09,355 DEBUG: [/Panorama Public/2022/KIT Food Chemistry - Absolute and relative quantititation of ATIs in modified wheat] Folder type: Targeted MS
23 Aug 2022 14:37:09,355 DEBUG: [/Panorama Public/2022/KIT Food Chemistry - Absolute and relative quantititation of ATIs in modified wheat] Active modules: API, TargetedMS, Wiki, Announcements, Issues, MS2, PanoramaPublic, Query, Internal, FileContent, Experiment, Pipeline, Core, Search, Assay
23 Aug 2022 14:37:09,424 INFO : Done importing folder properties (folder type, settings and active modules)
23 Aug 2022 14:37:09,425 INFO : Loading container specific module properties
23 Aug 2022 14:37:09,435 INFO : Done importing container specific module properties
23 Aug 2022 14:37:09,436 INFO : Loading etl definitions
23 Aug 2022 14:37:09,438 INFO : Loading wikis
23 Aug 2022 14:37:09,445 INFO : 1 wiki imported
23 Aug 2022 14:37:09,445 INFO : Done importing wikis
23 Aug 2022 14:37:09,445 INFO : Starting to copy files
23 Aug 2022 14:37:09,447 INFO : Copied 2 files
23 Aug 2022 14:37:09,447 INFO : Ensuring exp.data rows exist for imported files
23 Aug 2022 14:37:09,469 INFO : Starting Sample Type and Data Class import
23 Aug 2022 14:37:09,469 INFO : No types XAR file to process.
23 Aug 2022 14:37:09,469 INFO : Finished importing Sample Types and Data Classes
23 Aug 2022 14:37:09,470 INFO : Loading xar
23 Aug 2022 14:37:09,478 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-10674:Absolute+and+relative+quantitation+of+ATI+in+modified+wheat'
23 Aug 2022 14:37:09,478 DEBUG: Experiment/Run group import complete
23 Aug 2022 14:37:09,478 INFO : Done importing xar
23 Aug 2022 14:37:09,481 INFO : Loading pages and webpart properties
23 Aug 2022 14:37:09,560 INFO : Done importing 4 page(s) with 8 webpart(s)
23 Aug 2022 14:37:09,561 INFO : Starting Sample Status Data import
23 Aug 2022 14:37:09,561 INFO : No sample types XAR file to process.
23 Aug 2022 14:37:09,561 INFO : Finished importing Sample Status Data
23 Aug 2022 14:37:09,566 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
23 Aug 2022 14:37:09,568 INFO : A row containing [Description: 'null', Color: '800000', Name: 'Reagent Change'] values already exists. Skipping
23 Aug 2022 14:37:09,569 INFO : A row containing [Description: 'null', Color: 'FF0000', Name: 'Instrumentation Change'] values already exists. Skipping
23 Aug 2022 14:37:09,569 INFO : A row containing [Description: 'null', Color: '0000FF', Name: 'Technician Change'] values already exists. Skipping
23 Aug 2022 14:37:09,569 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
23 Aug 2022 14:37:09,571 INFO : Loading subfolders and container tabs
23 Aug 2022 14:37:09,617 INFO : New folder created with inherited permissions: /Panorama Public/2022/KIT Food Chemistry - Absolute and relative quantititation of ATIs in modified wheat/Absolute quantitation
23 Aug 2022 14:37:09,617 INFO : Loading folder archive for Absolute quantitation
23 Aug 2022 14:37:09,618 DEBUG: [/Panorama Public/2022/KIT Food Chemistry - Absolute and relative quantititation of ATIs in modified wheat/Absolute quantitation] Importing folder properties from: /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KIT Food Chemistry - Absolute and relative quantititation of ATIs in modified wheat_767936d0-0557-103b-adec-fea6ddf58494/_temp__2022-08-23_14-35-09/export/subfolders/Absolute quantitation
23 Aug 2022 14:37:09,619 INFO : Loading folder properties (folder type, settings and active modules)
23 Aug 2022 14:37:09,619 DEBUG: [/Panorama Public/2022/KIT Food Chemistry - Absolute and relative quantititation of ATIs in modified wheat/Absolute quantitation] Folder type: Targeted MS
23 Aug 2022 14:37:09,619 DEBUG: [/Panorama Public/2022/KIT Food Chemistry - Absolute and relative quantititation of ATIs in modified wheat/Absolute quantitation] Active modules: API, TargetedMS, Wiki, Announcements, Issues, MS2, PanoramaPublic, Query, Internal, FileContent, Experiment, Pipeline, Core, Search, Assay
23 Aug 2022 14:37:09,676 INFO : Done importing folder properties (folder type, settings and active modules)
23 Aug 2022 14:37:09,677 INFO : Loading container specific module properties
23 Aug 2022 14:37:09,688 INFO : Done importing container specific module properties
23 Aug 2022 14:37:09,689 INFO : Loading etl definitions
23 Aug 2022 14:37:09,691 INFO : Loading wikis
23 Aug 2022 14:37:09,691 INFO : 0 wikis imported
23 Aug 2022 14:37:09,691 INFO : Done importing wikis
23 Aug 2022 14:37:09,692 INFO : Starting to copy files
23 Aug 2022 14:37:42,736 INFO : Copied 66 files
23 Aug 2022 14:37:42,736 INFO : Ensuring exp.data rows exist for imported files
23 Aug 2022 14:37:43,020 INFO : Starting Sample Type and Data Class import
23 Aug 2022 14:37:43,020 INFO : No types XAR file to process.
23 Aug 2022 14:37:43,020 INFO : Finished importing Sample Types and Data Classes
23 Aug 2022 14:37:43,022 INFO : Loading xar
23 Aug 2022 14:37:43,271 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-10675:TargetedMS.ImportSkyZip.Core'
23 Aug 2022 14:37:43,273 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-10675:TargetedMS.ImportSkyZip.Output'
23 Aug 2022 14:37:43,275 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-10675:TargetedMS.ImportSkyZip'
23 Aug 2022 14:37:43,275 DEBUG: Protocol import complete
23 Aug 2022 14:37:43,283 DEBUG: Protocol action set import complete
23 Aug 2022 14:37:43,289 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-10675:TargetedMS.ImportSkyZip'
23 Aug 2022 14:37:43,295 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-10675:0d10a5be-b824-103a-a967-fea6ddf5e15e'
23 Aug 2022 14:37:43,298 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-10675:0d10a598-b824-103a-a967-fea6ddf5e15e'
23 Aug 2022 14:37:43,298 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-10675:TargetedMS.ImportSkyZip.Core'
23 Aug 2022 14:37:43,301 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-10675:TargetedMS.ImportSkyZip.Output'
23 Aug 2022 14:37:43,301 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-10675:0d10a5f0-b824-103a-a967-fea6ddf5e15e'
23 Aug 2022 14:37:43,305 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-10675:TargetedMS.ImportSkyZip'
23 Aug 2022 14:37:43,308 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-10675:e3637208-b825-103a-a967-fea6ddf5e15e'
23 Aug 2022 14:37:43,311 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-10675:e36371f9-b825-103a-a967-fea6ddf5e15e'
23 Aug 2022 14:37:43,311 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-10675:TargetedMS.ImportSkyZip.Core'
23 Aug 2022 14:37:43,312 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-10675:TargetedMS.ImportSkyZip.Output'
23 Aug 2022 14:37:43,313 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-10675:e3637250-b825-103a-a967-fea6ddf5e15e'
23 Aug 2022 14:37:43,315 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KIT%20Food%20Chemistry%20-%20Absolute%20and%20relative%20quantititation%20of%20ATIs%20in%20modified%20wheat_767936d0-0557-103b-adec-fea6ddf58494/_temp__2022-08-23_14-35-09/export/subfolders/Absolute%20quantitation/xar/experiments_and_runs.xar.exploded/Run135968/20220517_Auswertung_CRISPR-CAS_Abic_IS_Vantage_fuerPanorama_2022-05-17_17-37-31/20220517_Auswertung_CRISPR-CAS_Abic_IS_Vantage_fuerPanorama.skyd into the system
23 Aug 2022 14:37:43,316 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KIT%20Food%20Chemistry%20-%20Absolute%20and%20relative%20quantititation%20of%20ATIs%20in%20modified%20wheat_767936d0-0557-103b-adec-fea6ddf58494/_temp__2022-08-23_14-35-09/export/subfolders/Absolute%20quantitation/xar/experiments_and_runs.xar.exploded/Run135968/20220517_Auswertung_CRISPR-CAS_Abic_IS_Vantage_fuerPanorama_2022-05-17_17-37-31/20220517_Auswertung_CRISPR-CAS_Abic_IS_Vantage_fuerPanorama.skyd into the system
23 Aug 2022 14:37:43,316 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KIT%20Food%20Chemistry%20-%20Absolute%20and%20relative%20quantititation%20of%20ATIs%20in%20modified%20wheat_767936d0-0557-103b-adec-fea6ddf58494/_temp__2022-08-23_14-35-09/export/subfolders/Absolute%20quantitation/xar/experiments_and_runs.xar.exploded/Run135968/20220517_Auswertung_CRISPR-CAS_Abic_IS_Vantage_fuerPanorama_2022-05-17_17-37-31.sky.zip into the system
23 Aug 2022 14:37:43,317 INFO : Starting import from 20220517_Auswertung_CRISPR-CAS_Abic_IS_Vantage_fuerPanorama_2022-05-17_17-37-31.sky.zip
23 Aug 2022 14:37:43,320 INFO : Starting to import Skyline document from 20220517_Auswertung_CRISPR-CAS_Abic_IS_Vantage_fuerPanorama_2022-05-17_17-37-31.sky.zip
23 Aug 2022 14:37:43,322 INFO : Expanding 20220517_Auswertung_CRISPR-CAS_Abic_IS_Vantage_fuerPanorama.skyd
23 Aug 2022 14:37:43,389 INFO : Expanding 20220517_Auswertung_CRISPR-CAS_Abic_IS_Vantage_fuerPanorama.sky.view
23 Aug 2022 14:37:43,389 INFO : Expanding 20220517_Auswertung_CRISPR-CAS_Abic_IS_Vantage_fuerPanorama.sky
23 Aug 2022 14:37:43,403 INFO : 2% Done
23 Aug 2022 14:37:43,450 DEBUG: Starting to load chromatogram headers
23 Aug 2022 14:37:43,452 DEBUG: Done loading chromatogram headers
23 Aug 2022 14:37:43,645 INFO : Inserting 0.28 sp|P01083|IAA2_WHEAT
23 Aug 2022 14:37:43,659 INFO : 7% Done
23 Aug 2022 14:37:43,737 INFO : 13% Done
23 Aug 2022 14:37:43,804 DEBUG: Total peptides inserted: 2
23 Aug 2022 14:37:43,804 INFO : Inserting 0.19 sp|P01085|IAA1_WHEAT
23 Aug 2022 14:37:43,815 INFO : 19% Done
23 Aug 2022 14:37:43,889 INFO : 25% Done
23 Aug 2022 14:37:43,952 DEBUG: Total peptides inserted: 2
23 Aug 2022 14:37:43,952 INFO : Inserting 0.53 sp|P01084|IAA5_WHEAT
23 Aug 2022 14:37:43,964 INFO : 29% Done
23 Aug 2022 14:37:44,010 DEBUG: Total peptides inserted: 1
23 Aug 2022 14:37:44,010 INFO : Inserting CM1 sp|P16850|IAAC1_WHEAT
23 Aug 2022 14:37:44,023 INFO : 35% Done
23 Aug 2022 14:37:44,090 DEBUG: Total peptides inserted: 1
23 Aug 2022 14:37:44,091 INFO : Inserting CM2 sp|P16851|IAAC2_WHEAT
23 Aug 2022 14:37:44,101 INFO : 39% Done
23 Aug 2022 14:37:44,158 INFO : 43% Done
23 Aug 2022 14:37:44,204 DEBUG: Total peptides inserted: 2
23 Aug 2022 14:37:44,205 INFO : Inserting CM3 sp|P17314|IAAC3_WHEAT
23 Aug 2022 14:37:44,217 INFO : 47% Done
23 Aug 2022 14:37:44,276 INFO : 53% Done
23 Aug 2022 14:37:44,340 DEBUG: Total peptides inserted: 2
23 Aug 2022 14:37:44,343 INFO : 54% Done
23 Aug 2022 14:37:44,343 INFO : Inserting CM16 sp|P16159|IAC16_WHEAT
23 Aug 2022 14:37:44,353 INFO : 59% Done
23 Aug 2022 14:37:44,417 INFO : 65% Done
23 Aug 2022 14:37:44,489 INFO : 69% Done
23 Aug 2022 14:37:44,537 DEBUG: Total peptides inserted: 3
23 Aug 2022 14:37:44,537 INFO : Inserting CM17 tr|Q41540|Q41540_WHEAT
23 Aug 2022 14:37:44,549 INFO : 74% Done
23 Aug 2022 14:37:44,607 DEBUG: Total peptides inserted: 1
23 Aug 2022 14:37:44,607 INFO : Inserting WASI sp|P16347|IAAS_WHEAT
23 Aug 2022 14:37:44,619 INFO : 76% Done
23 Aug 2022 14:37:44,660 DEBUG: Total peptides inserted: 1
23 Aug 2022 14:37:44,660 INFO : Inserting CMX1/3 sp|Q43723|IACX1_WHEAT
23 Aug 2022 14:37:44,672 INFO : 81% Done
23 Aug 2022 14:37:44,727 DEBUG: Total peptides inserted: 1
23 Aug 2022 14:37:44,727 INFO : Inserting WCI sp|P83207|ICIW2_WHEAT
23 Aug 2022 14:37:44,739 INFO : 86% Done
23 Aug 2022 14:37:44,799 INFO : 91% Done
23 Aug 2022 14:37:44,861 DEBUG: Total peptides inserted: 2
23 Aug 2022 14:37:44,861 INFO : Inserting sp|P-----|IBB3_WHEAT
23 Aug 2022 14:37:44,870 INFO : 94% Done
23 Aug 2022 14:37:44,921 INFO : 98% Done
23 Aug 2022 14:37:44,972 DEBUG: Total peptides inserted: 2
23 Aug 2022 14:37:44,974 INFO : Done parsing Skyline document.
23 Aug 2022 14:37:44,975 INFO : Creating and populating temp tables for Proportion values
23 Aug 2022 14:37:45,017 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
23 Aug 2022 14:37:45,060 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
23 Aug 2022 14:37:45,075 INFO : Cleaning up temp tables
23 Aug 2022 14:37:45,330 INFO : Completed import of Skyline document from 20220517_Auswertung_CRISPR-CAS_Abic_IS_Vantage_fuerPanorama_2022-05-17_17-37-31.sky.zip
23 Aug 2022 14:37:45,337 INFO : 100% Done
23 Aug 2022 14:37:45,342 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KIT%20Food%20Chemistry%20-%20Absolute%20and%20relative%20quantititation%20of%20ATIs%20in%20modified%20wheat_767936d0-0557-103b-adec-fea6ddf58494/_temp__2022-08-23_14-35-09/export/subfolders/Absolute%20quantitation/xar/experiments_and_runs.xar.exploded/Run135968/20220517_Auswertung_CRISPR-CAS_Abic_IS_Vantage_fuerPanorama_2022-05-17_17-37-31.sky.zip into the system
23 Aug 2022 14:37:45,342 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KIT%20Food%20Chemistry%20-%20Absolute%20and%20relative%20quantititation%20of%20ATIs%20in%20modified%20wheat_767936d0-0557-103b-adec-fea6ddf58494/_temp__2022-08-23_14-35-09/export/subfolders/Absolute%20quantitation/xar/experiments_and_runs.xar.exploded/Run135969/20220517_CRISPR-Cas_totalProtein_SIDA_Absolute_13ATI_fuerPanorama_2022-05-17_17-45-00/20220517_CRISPR-Cas_totalProtein_SIDA_Absolute_13ATI_fuerPanorama.skyd into the system
23 Aug 2022 14:37:45,342 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KIT%20Food%20Chemistry%20-%20Absolute%20and%20relative%20quantititation%20of%20ATIs%20in%20modified%20wheat_767936d0-0557-103b-adec-fea6ddf58494/_temp__2022-08-23_14-35-09/export/subfolders/Absolute%20quantitation/xar/experiments_and_runs.xar.exploded/Run135969/20220517_CRISPR-Cas_totalProtein_SIDA_Absolute_13ATI_fuerPanorama_2022-05-17_17-45-00/20220517_CRISPR-Cas_totalProtein_SIDA_Absolute_13ATI_fuerPanorama.skyd into the system
23 Aug 2022 14:37:45,342 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KIT%20Food%20Chemistry%20-%20Absolute%20and%20relative%20quantititation%20of%20ATIs%20in%20modified%20wheat_767936d0-0557-103b-adec-fea6ddf58494/_temp__2022-08-23_14-35-09/export/subfolders/Absolute%20quantitation/xar/experiments_and_runs.xar.exploded/Run135969/20220517_CRISPR-Cas_totalProtein_SIDA_Absolute_13ATI_fuerPanorama_2022-05-17_17-45-00.sky.zip into the system
23 Aug 2022 14:37:45,343 INFO : Starting import from 20220517_CRISPR-Cas_totalProtein_SIDA_Absolute_13ATI_fuerPanorama_2022-05-17_17-45-00.sky.zip
23 Aug 2022 14:37:45,345 INFO : Starting to import Skyline document from 20220517_CRISPR-Cas_totalProtein_SIDA_Absolute_13ATI_fuerPanorama_2022-05-17_17-45-00.sky.zip
23 Aug 2022 14:37:45,348 INFO : Expanding 20220517_CRISPR-Cas_totalProtein_SIDA_Absolute_13ATI_fuerPanorama.skyd
23 Aug 2022 14:37:45,413 INFO : Expanding 20220517_CRISPR-Cas_totalProtein_SIDA_Absolute_13ATI_fuerPanorama.sky.view
23 Aug 2022 14:37:45,414 INFO : Expanding 20220517_CRISPR-Cas_totalProtein_SIDA_Absolute_13ATI_fuerPanorama.sky
23 Aug 2022 14:37:45,428 INFO : 1% Done
23 Aug 2022 14:37:45,480 DEBUG: Starting to load chromatogram headers
23 Aug 2022 14:37:45,482 DEBUG: Done loading chromatogram headers
23 Aug 2022 14:37:45,671 INFO : Inserting 0.28 sp|P01083|IAA2_WHEAT
23 Aug 2022 14:37:45,680 INFO : 6% Done
23 Aug 2022 14:37:45,749 INFO : 11% Done
23 Aug 2022 14:37:45,815 DEBUG: Total peptides inserted: 2
23 Aug 2022 14:37:45,816 INFO : Inserting 0.19 sp|P01085|IAA1_WHEAT
23 Aug 2022 14:37:45,826 INFO : 16% Done
23 Aug 2022 14:37:45,902 INFO : 22% Done
23 Aug 2022 14:37:45,969 DEBUG: Total peptides inserted: 2
23 Aug 2022 14:37:45,969 INFO : Inserting 0.53 sp|P01084|IAA5_WHEAT
23 Aug 2022 14:37:45,980 INFO : 26% Done
23 Aug 2022 14:37:46,045 DEBUG: Total peptides inserted: 1
23 Aug 2022 14:37:46,045 INFO : Inserting CM1 sp|P16850|IAAC1_WHEAT
23 Aug 2022 14:37:46,058 INFO : 30% Done
23 Aug 2022 14:37:46,116 DEBUG: Total peptides inserted: 1
23 Aug 2022 14:37:46,116 INFO : Inserting CM2 sp|P16851|IAAC2_WHEAT
23 Aug 2022 14:37:46,128 INFO : 35% Done
23 Aug 2022 14:37:46,199 INFO : 40% Done
23 Aug 2022 14:37:46,267 DEBUG: Total peptides inserted: 2
23 Aug 2022 14:37:46,267 INFO : Inserting CM3 sp|P17314|IAAC3_WHEAT
23 Aug 2022 14:37:46,282 INFO : 45% Done
23 Aug 2022 14:37:46,360 INFO : 51% Done
23 Aug 2022 14:37:46,430 DEBUG: Total peptides inserted: 2
23 Aug 2022 14:37:46,431 INFO : Inserting CM16 sp|P16159|IAC16_WHEAT
23 Aug 2022 14:37:46,442 INFO : 55% Done
23 Aug 2022 14:37:46,509 INFO : 60% Done
23 Aug 2022 14:37:46,586 INFO : 65% Done
23 Aug 2022 14:37:46,644 DEBUG: Total peptides inserted: 3
23 Aug 2022 14:37:46,644 INFO : Inserting CM17 tr|Q41540|Q41540_WHEAT
23 Aug 2022 14:37:46,656 INFO : 69% Done
23 Aug 2022 14:37:46,714 DEBUG: Total peptides inserted: 1
23 Aug 2022 14:37:46,714 INFO : Inserting WASI sp|P16347|IAAS_WHEAT
23 Aug 2022 14:37:46,727 INFO : 74% Done
23 Aug 2022 14:37:46,800 INFO : 77% Done
23 Aug 2022 14:37:46,847 DEBUG: Total peptides inserted: 2
23 Aug 2022 14:37:46,847 INFO : Inserting CMX1/3 sp|Q43723|IACX1_WHEAT
23 Aug 2022 14:37:46,858 INFO : 81% Done
23 Aug 2022 14:37:46,912 DEBUG: Total peptides inserted: 1
23 Aug 2022 14:37:46,912 INFO : Inserting WCI sp|P83207|ICIW2_WHEAT
23 Aug 2022 14:37:46,922 INFO : 86% Done
23 Aug 2022 14:37:46,984 INFO : 90% Done
23 Aug 2022 14:37:47,039 DEBUG: Total peptides inserted: 2
23 Aug 2022 14:37:47,039 INFO : Inserting sp|P-----|IBB3_WHEAT
23 Aug 2022 14:37:47,048 INFO : 94% Done
23 Aug 2022 14:37:47,110 INFO : 98% Done
23 Aug 2022 14:37:47,157 DEBUG: Total peptides inserted: 2
23 Aug 2022 14:37:47,158 INFO : Done parsing Skyline document.
23 Aug 2022 14:37:47,159 INFO : Creating and populating temp tables for Proportion values
23 Aug 2022 14:37:47,199 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
23 Aug 2022 14:37:47,242 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
23 Aug 2022 14:37:47,258 INFO : Cleaning up temp tables
23 Aug 2022 14:37:47,458 INFO : Completed import of Skyline document from 20220517_CRISPR-Cas_totalProtein_SIDA_Absolute_13ATI_fuerPanorama_2022-05-17_17-45-00.sky.zip
23 Aug 2022 14:37:47,460 INFO : 100% Done
23 Aug 2022 14:37:47,464 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KIT%20Food%20Chemistry%20-%20Absolute%20and%20relative%20quantititation%20of%20ATIs%20in%20modified%20wheat_767936d0-0557-103b-adec-fea6ddf58494/_temp__2022-08-23_14-35-09/export/subfolders/Absolute%20quantitation/xar/experiments_and_runs.xar.exploded/Run135969/20220517_CRISPR-Cas_totalProtein_SIDA_Absolute_13ATI_fuerPanorama_2022-05-17_17-45-00.sky.zip into the system
23 Aug 2022 14:37:47,473 INFO : Done importing xar
23 Aug 2022 14:37:47,474 INFO : Loading pages and webpart properties
23 Aug 2022 14:37:47,545 INFO : Done importing 4 page(s) with 6 webpart(s)
23 Aug 2022 14:37:47,546 INFO : Starting Sample Status Data import
23 Aug 2022 14:37:47,546 INFO : No sample types XAR file to process.
23 Aug 2022 14:37:47,546 INFO : Finished importing Sample Status Data
23 Aug 2022 14:37:47,551 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
23 Aug 2022 14:37:47,552 INFO : A row containing [Description: 'null', Color: '800000', Name: 'Reagent Change'] values already exists. Skipping
23 Aug 2022 14:37:47,552 INFO : A row containing [Description: 'null', Color: 'FF0000', Name: 'Instrumentation Change'] values already exists. Skipping
23 Aug 2022 14:37:47,553 INFO : A row containing [Description: 'null', Color: '0000FF', Name: 'Technician Change'] values already exists. Skipping
23 Aug 2022 14:37:47,553 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
23 Aug 2022 14:37:47,553 INFO : Done importing folder archive for Absolute quantitation
23 Aug 2022 14:37:47,602 INFO : New folder created with inherited permissions: /Panorama Public/2022/KIT Food Chemistry - Absolute and relative quantititation of ATIs in modified wheat/Relative quantitation using Skyline
23 Aug 2022 14:37:47,603 INFO : Loading folder archive for Relative quantitation using Skyline
23 Aug 2022 14:37:47,603 DEBUG: [/Panorama Public/2022/KIT Food Chemistry - Absolute and relative quantititation of ATIs in modified wheat/Relative quantitation using Skyline] Importing folder properties from: /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KIT Food Chemistry - Absolute and relative quantititation of ATIs in modified wheat_767936d0-0557-103b-adec-fea6ddf58494/_temp__2022-08-23_14-35-09/export/subfolders/Relative quantitation using Skyline
23 Aug 2022 14:37:47,604 INFO : Loading folder properties (folder type, settings and active modules)
23 Aug 2022 14:37:47,604 DEBUG: [/Panorama Public/2022/KIT Food Chemistry - Absolute and relative quantititation of ATIs in modified wheat/Relative quantitation using Skyline] Folder type: Targeted MS
23 Aug 2022 14:37:47,604 DEBUG: [/Panorama Public/2022/KIT Food Chemistry - Absolute and relative quantititation of ATIs in modified wheat/Relative quantitation using Skyline] Active modules: API, TargetedMS, Wiki, Announcements, Issues, MS2, PanoramaPublic, Query, Internal, FileContent, Experiment, Pipeline, Core, Search, Assay
23 Aug 2022 14:37:47,655 INFO : Done importing folder properties (folder type, settings and active modules)
23 Aug 2022 14:37:47,656 INFO : Loading container specific module properties
23 Aug 2022 14:37:47,666 INFO : Done importing container specific module properties
23 Aug 2022 14:37:47,667 INFO : Loading etl definitions
23 Aug 2022 14:37:47,668 INFO : Loading wikis
23 Aug 2022 14:37:47,669 INFO : 0 wikis imported
23 Aug 2022 14:37:47,669 INFO : Done importing wikis
23 Aug 2022 14:37:47,670 INFO : Starting to copy files
23 Aug 2022 14:39:00,237 INFO : Copied 29 files
23 Aug 2022 14:39:00,238 INFO : Ensuring exp.data rows exist for imported files
23 Aug 2022 14:39:00,366 INFO : Starting Sample Type and Data Class import
23 Aug 2022 14:39:00,366 INFO : No types XAR file to process.
23 Aug 2022 14:39:00,366 INFO : Finished importing Sample Types and Data Classes
23 Aug 2022 14:39:00,367 INFO : Loading xar
23 Aug 2022 14:39:00,978 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-10676:TargetedMS.ImportSkyZip.Core'
23 Aug 2022 14:39:00,981 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-10676:TargetedMS.ImportSkyZip.Output'
23 Aug 2022 14:39:00,983 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-10676:TargetedMS.ImportSkyZip'
23 Aug 2022 14:39:00,983 DEBUG: Protocol import complete
23 Aug 2022 14:39:00,993 DEBUG: Protocol action set import complete
23 Aug 2022 14:39:01,001 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-10676:TargetedMS.ImportSkyZip'
23 Aug 2022 14:39:01,008 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-10676:16b08b7d-b827-103a-a967-fea6ddf5e15e'
23 Aug 2022 14:39:01,011 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-10676:16b08b59-b827-103a-a967-fea6ddf5e15e'
23 Aug 2022 14:39:01,011 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-10676:TargetedMS.ImportSkyZip.Core'
23 Aug 2022 14:39:01,014 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-10676:TargetedMS.ImportSkyZip.Output'
23 Aug 2022 14:39:01,014 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-10676:16b08cb2-b827-103a-a967-fea6ddf5e15e'
23 Aug 2022 14:39:01,015 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KIT%20Food%20Chemistry%20-%20Absolute%20and%20relative%20quantititation%20of%20ATIs%20in%20modified%20wheat_767936d0-0557-103b-adec-fea6ddf58494/_temp__2022-08-23_14-35-09/export/subfolders/Relative%20quantitation%20using%20Skyline/xar/experiments_and_runs.xar.exploded/Run135971/20220517_CRISPR_TEP_T_Orbitrap_MQ_Skyline_fuerPanorama_2022-05-17_17-53-29/20220517_CRISPR_TEP_T_Orbitrap_MQ_Skyline_fuerPanorama.skyd into the system
23 Aug 2022 14:39:01,016 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KIT%20Food%20Chemistry%20-%20Absolute%20and%20relative%20quantititation%20of%20ATIs%20in%20modified%20wheat_767936d0-0557-103b-adec-fea6ddf58494/_temp__2022-08-23_14-35-09/export/subfolders/Relative%20quantitation%20using%20Skyline/xar/experiments_and_runs.xar.exploded/Run135971/20220517_CRISPR_TEP_T_Orbitrap_MQ_Skyline_fuerPanorama_2022-05-17_17-53-29/20220517_CRISPR_TEP_T_Orbitrap_MQ_Skyline_fuerPanorama.skyd into the system
23 Aug 2022 14:39:01,016 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KIT%20Food%20Chemistry%20-%20Absolute%20and%20relative%20quantititation%20of%20ATIs%20in%20modified%20wheat_767936d0-0557-103b-adec-fea6ddf58494/_temp__2022-08-23_14-35-09/export/subfolders/Relative%20quantitation%20using%20Skyline/xar/experiments_and_runs.xar.exploded/Run135971/20220517_CRISPR_TEP_T_Orbitrap_MQ_Skyline_fuerPanorama_2022-05-17_17-53-29.sky.zip into the system
23 Aug 2022 14:39:01,018 INFO : Starting import from 20220517_CRISPR_TEP_T_Orbitrap_MQ_Skyline_fuerPanorama_2022-05-17_17-53-29.sky.zip
23 Aug 2022 14:39:01,022 INFO : Starting to import Skyline document from 20220517_CRISPR_TEP_T_Orbitrap_MQ_Skyline_fuerPanorama_2022-05-17_17-53-29.sky.zip
23 Aug 2022 14:39:01,024 INFO : Expanding 20220517_CRISPR_TEP_T_Orbitrap_MQ_Skyline_fuerPanorama.blib
23 Aug 2022 14:39:01,113 INFO : Expanding 20220517_CRISPR_TEP_T_Orbitrap_MQ_Skyline_fuerPanorama.redundant.blib
23 Aug 2022 14:39:02,235 INFO : Expanding 20220517_CRISPR_TEP_T_Orbitrap_MQ_Skyline_fuerPanorama.skyd
23 Aug 2022 14:39:02,306 INFO : Expanding 20220517_CRISPR_TEP_T_Orbitrap_MQ_Skyline_fuerPanorama.sky.view
23 Aug 2022 14:39:02,307 INFO : Expanding 20220517_CRISPR_TEP_T_Orbitrap_MQ_Skyline_fuerPanorama.sky
23 Aug 2022 14:39:02,313 INFO : Expanding 20220517_CRISPR_TEP_T_Orbitrap_MQ_Skyline_fuerPanorama.skyl
23 Aug 2022 14:39:02,323 INFO : 4% Done
23 Aug 2022 14:39:02,362 DEBUG: Starting to load chromatogram headers
23 Aug 2022 14:39:02,364 DEBUG: Done loading chromatogram headers
23 Aug 2022 14:39:02,569 INFO : Inserting sp|P01085|IAA1_WHEAT_0.19
23 Aug 2022 14:39:02,578 INFO : 7% Done
23 Aug 2022 14:39:02,601 INFO : 8% Done
23 Aug 2022 14:39:02,625 INFO : 10% Done
23 Aug 2022 14:39:02,647 INFO : 12% Done
23 Aug 2022 14:39:02,672 INFO : 14% Done
23 Aug 2022 14:39:02,696 INFO : 16% Done
23 Aug 2022 14:39:02,710 DEBUG: Total peptides inserted: 6
23 Aug 2022 14:39:02,711 INFO : Inserting sp|P01083|IAA2_WHEAT_0.28
23 Aug 2022 14:39:02,724 INFO : 18% Done
23 Aug 2022 14:39:02,746 INFO : 19% Done
23 Aug 2022 14:39:02,764 INFO : 21% Done
23 Aug 2022 14:39:02,781 INFO : 23% Done
23 Aug 2022 14:39:02,800 INFO : 25% Done
23 Aug 2022 14:39:02,823 INFO : 26% Done
23 Aug 2022 14:39:02,846 INFO : 27% Done
23 Aug 2022 14:39:02,867 INFO : 29% Done
23 Aug 2022 14:39:02,882 DEBUG: Total peptides inserted: 8
23 Aug 2022 14:39:02,882 INFO : Inserting sp|P01084|IAA5_WHEAT_0.53
23 Aug 2022 14:39:02,892 INFO : 31% Done
23 Aug 2022 14:39:02,916 INFO : 33% Done
23 Aug 2022 14:39:02,938 INFO : 34% Done
23 Aug 2022 14:39:02,960 INFO : 36% Done
23 Aug 2022 14:39:02,979 INFO : 38% Done
23 Aug 2022 14:39:02,992 DEBUG: Total peptides inserted: 5
23 Aug 2022 14:39:02,992 INFO : Inserting sp|P16850|IAAC1_WHEAT_CM1
23 Aug 2022 14:39:03,002 INFO : 40% Done
23 Aug 2022 14:39:03,024 INFO : 42% Done
23 Aug 2022 14:39:03,038 DEBUG: Total peptides inserted: 2
23 Aug 2022 14:39:03,038 INFO : Inserting sp|P16851|IAAC2_WHEAT_CM2
23 Aug 2022 14:39:03,047 INFO : 44% Done
23 Aug 2022 14:39:03,069 INFO : 45% Done
23 Aug 2022 14:39:03,083 DEBUG: Total peptides inserted: 2
23 Aug 2022 14:39:03,083 INFO : Inserting sp|P17314|IAAC3_WHEAT_CM3
23 Aug 2022 14:39:03,093 INFO : 47% Done
23 Aug 2022 14:39:03,114 INFO : 49% Done
23 Aug 2022 14:39:03,133 INFO : 51% Done
23 Aug 2022 14:39:03,157 INFO : 53% Done
23 Aug 2022 14:39:03,177 INFO : 54% Done
23 Aug 2022 14:39:03,196 INFO : 56% Done
23 Aug 2022 14:39:03,216 INFO : 58% Done
23 Aug 2022 14:39:03,236 INFO : 60% Done
23 Aug 2022 14:39:03,260 INFO : 62% Done
23 Aug 2022 14:39:03,274 DEBUG: Total peptides inserted: 9
23 Aug 2022 14:39:03,274 INFO : Inserting sp|P16159|IAC16_WHEAT_CM16
23 Aug 2022 14:39:03,284 INFO : 63% Done
23 Aug 2022 14:39:03,303 INFO : 65% Done
23 Aug 2022 14:39:03,324 INFO : 67% Done
23 Aug 2022 14:39:03,348 INFO : 69% Done
23 Aug 2022 14:39:03,369 INFO : 70% Done
23 Aug 2022 14:39:03,384 DEBUG: Total peptides inserted: 5
23 Aug 2022 14:39:03,384 INFO : Inserting tr|Q41540|Q41540_WHEAT_CM17
23 Aug 2022 14:39:03,393 INFO : 72% Done
23 Aug 2022 14:39:03,413 INFO : 74% Done
23 Aug 2022 14:39:03,431 INFO : 75% Done
23 Aug 2022 14:39:03,451 INFO : 76% Done
23 Aug 2022 14:39:03,468 DEBUG: Total peptides inserted: 4
23 Aug 2022 14:39:03,471 INFO : 77% Done
23 Aug 2022 14:39:03,471 INFO : Inserting sp|Q43723|IACX1_WHEAT_CMX1/3
23 Aug 2022 14:39:03,478 INFO : 78% Done
23 Aug 2022 14:39:03,498 INFO : 80% Done
23 Aug 2022 14:39:03,511 DEBUG: Total peptides inserted: 2
23 Aug 2022 14:39:03,511 INFO : Inserting sp|Q43691|IACX2_WHEAT_CMX2
23 Aug 2022 14:39:03,519 INFO : 82% Done
23 Aug 2022 14:39:03,538 INFO : 84% Done
23 Aug 2022 14:39:03,551 DEBUG: Total peptides inserted: 2
23 Aug 2022 14:39:03,552 INFO : Inserting sp|P16347|IAAS_WHEAT_WASI
23 Aug 2022 14:39:03,559 INFO : 86% Done
23 Aug 2022 14:39:03,580 INFO : 87% Done
23 Aug 2022 14:39:03,597 DEBUG: Total peptides inserted: 2
23 Aug 2022 14:39:03,597 INFO : Inserting sp|P83207|ICIW2_WHEAT_WCI
23 Aug 2022 14:39:03,606 INFO : 89% Done
23 Aug 2022 14:39:03,631 INFO : 91% Done
23 Aug 2022 14:39:03,663 INFO : 93% Done
23 Aug 2022 14:39:03,681 DEBUG: Total peptides inserted: 3
23 Aug 2022 14:39:03,681 INFO : Inserting WTI
23 Aug 2022 14:39:03,692 INFO : 95% Done
23 Aug 2022 14:39:03,721 INFO : 96% Done
23 Aug 2022 14:39:03,745 INFO : 98% Done
23 Aug 2022 14:39:03,761 DEBUG: Total peptides inserted: 3
23 Aug 2022 14:39:03,762 INFO : Done parsing Skyline document.
23 Aug 2022 14:39:03,912 INFO : Creating and populating temp tables for Proportion values
23 Aug 2022 14:39:03,963 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
23 Aug 2022 14:39:04,013 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
23 Aug 2022 14:39:04,046 INFO : Cleaning up temp tables
23 Aug 2022 14:39:04,261 INFO : Completed import of Skyline document from 20220517_CRISPR_TEP_T_Orbitrap_MQ_Skyline_fuerPanorama_2022-05-17_17-53-29.sky.zip
23 Aug 2022 14:39:04,263 INFO : 100% Done
23 Aug 2022 14:39:04,267 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KIT%20Food%20Chemistry%20-%20Absolute%20and%20relative%20quantititation%20of%20ATIs%20in%20modified%20wheat_767936d0-0557-103b-adec-fea6ddf58494/_temp__2022-08-23_14-35-09/export/subfolders/Relative%20quantitation%20using%20Skyline/xar/experiments_and_runs.xar.exploded/Run135971/20220517_CRISPR_TEP_T_Orbitrap_MQ_Skyline_fuerPanorama_2022-05-17_17-53-29.sky.zip into the system
23 Aug 2022 14:39:04,274 INFO : Done importing xar
23 Aug 2022 14:39:04,275 INFO : Loading pages and webpart properties
23 Aug 2022 14:39:04,352 INFO : Done importing 4 page(s) with 7 webpart(s)
23 Aug 2022 14:39:04,354 INFO : Starting Sample Status Data import
23 Aug 2022 14:39:04,354 INFO : No sample types XAR file to process.
23 Aug 2022 14:39:04,354 INFO : Finished importing Sample Status Data
23 Aug 2022 14:39:04,359 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
23 Aug 2022 14:39:04,362 INFO : A row containing [Description: 'null', Color: '800000', Name: 'Reagent Change'] values already exists. Skipping
23 Aug 2022 14:39:04,363 INFO : A row containing [Description: 'null', Color: 'FF0000', Name: 'Instrumentation Change'] values already exists. Skipping
23 Aug 2022 14:39:04,363 INFO : A row containing [Description: 'null', Color: '0000FF', Name: 'Technician Change'] values already exists. Skipping
23 Aug 2022 14:39:04,363 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
23 Aug 2022 14:39:04,363 INFO : Done importing folder archive for Relative quantitation using Skyline
23 Aug 2022 14:39:04,363 INFO : Done importing subfolders and container tabs
23 Aug 2022 14:39:04,363 INFO : Importing files metadata.
23 Aug 2022 14:39:04,363 DEBUG: [/Panorama Public/2022/KIT Food Chemistry - Absolute and relative quantititation of ATIs in modified wheat] Reading files metadata from /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KIT Food Chemistry - Absolute and relative quantititation of ATIs in modified wheat_767936d0-0557-103b-adec-fea6ddf58494/_temp__2022-08-23_14-35-09/export
23 Aug 2022 14:39:04,364 DEBUG: [/Panorama Public/2022/KIT Food Chemistry - Absolute and relative quantititation of ATIs in modified wheat/Absolute quantitation] Reading files metadata from /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KIT Food Chemistry - Absolute and relative quantititation of ATIs in modified wheat_767936d0-0557-103b-adec-fea6ddf58494/_temp__2022-08-23_14-35-09/export/subfolders/Absolute quantitation
23 Aug 2022 14:39:04,365 DEBUG: [/Panorama Public/2022/KIT Food Chemistry - Absolute and relative quantititation of ATIs in modified wheat/Relative quantitation using Skyline] Reading files metadata from /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KIT Food Chemistry - Absolute and relative quantititation of ATIs in modified wheat_767936d0-0557-103b-adec-fea6ddf58494/_temp__2022-08-23_14-35-09/export/subfolders/Relative quantitation using Skyline
23 Aug 2022 14:39:04,366 INFO :
23 Aug 2022 14:39:04,366 INFO : Experiment import completed successfully.
23 Aug 2022 14:39:04,366 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
23 Aug 2022 14:39:04,392 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
23 Aug 2022 14:39:04,392 INFO :
23 Aug 2022 14:39:04,392 INFO : Checking for library folders.
23 Aug 2022 14:39:04,397 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
23 Aug 2022 14:39:04,417 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
23 Aug 2022 14:39:04,417 INFO :
23 Aug 2022 14:39:04,417 INFO : Finishing up experiment copy.
23 Aug 2022 14:39:04,419 INFO : Adding runs imported in subfolders.
23 Aug 2022 14:39:04,427 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
23 Aug 2022 14:39:04,428 INFO : Setting version on new experiment to 1
23 Aug 2022 14:39:04,428 INFO : Assigning a DOI.
23 Aug 2022 14:39:05,358 INFO : Assigned DOI: 10.6069/yyz3-2249
23 Aug 2022 14:39:05,363 INFO : Updating access URL to point to the new copy of the data.
23 Aug 2022 14:39:05,367 INFO : Removing copy permissions given to Panorama Public
23 Aug 2022 14:39:05,377 INFO : Adding read permissions to all users that are folder admins in the source folder.
23 Aug 2022 14:39:05,383 INFO : Updating the 'Raw Data' tab configuration
23 Aug 2022 14:39:05,387 INFO : Updating dataFileUrls for run 20220517_Auswertung_CRISPR-CAS_Abic_IS_Vantage_fuerPanorama_2022-05-17_17-37-31.sky.zip; targetedms run ID 143367
23 Aug 2022 14:39:05,387 INFO : Updating dataFileUrl...
23 Aug 2022 14:39:05,387 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KIT%20Food%20Chemistry%20-%20Absolute%20and%20relative%20quantititation%20of%20ATIs%20in%20modified%20wheat_767936d0-0557-103b-adec-fea6ddf58494/_temp__2022-08-23_14-35-09/export/subfolders/Absolute%20quantitation/xar/experiments_and_runs.xar.exploded/Run135968/20220517_Auswertung_CRISPR-CAS_Abic_IS_Vantage_fuerPanorama_2022-05-17_17-37-31.sky.zip
23 Aug 2022 14:39:05,387 INFO : to: file:///data/labkey/files/Panorama%20Public/2022/KIT%20Food%20Chemistry%20-%20Absolute%20and%20relative%20quantititation%20of%20ATIs%20in%20modified%20wheat/Absolute%20quantitation/@files/20220517_Auswertung_CRISPR-CAS_Abic_IS_Vantage_fuerPanorama_2022-05-17_17-37-31.sky.zip
23 Aug 2022 14:39:05,389 INFO : Updating dataFileUrl...
23 Aug 2022 14:39:05,389 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KIT%20Food%20Chemistry%20-%20Absolute%20and%20relative%20quantititation%20of%20ATIs%20in%20modified%20wheat_767936d0-0557-103b-adec-fea6ddf58494/_temp__2022-08-23_14-35-09/export/subfolders/Absolute%20quantitation/xar/experiments_and_runs.xar.exploded/Run135968/20220517_Auswertung_CRISPR-CAS_Abic_IS_Vantage_fuerPanorama_2022-05-17_17-37-31/20220517_Auswertung_CRISPR-CAS_Abic_IS_Vantage_fuerPanorama.skyd
23 Aug 2022 14:39:05,389 INFO : to: file:///data/labkey/files/Panorama%20Public/2022/KIT%20Food%20Chemistry%20-%20Absolute%20and%20relative%20quantititation%20of%20ATIs%20in%20modified%20wheat/Absolute%20quantitation/@files/20220517_Auswertung_CRISPR-CAS_Abic_IS_Vantage_fuerPanorama_2022-05-17_17-37-31/20220517_Auswertung_CRISPR-CAS_Abic_IS_Vantage_fuerPanorama.skyd
23 Aug 2022 14:39:05,392 INFO : Updating dataFileUrls for run 20220517_CRISPR-Cas_totalProtein_SIDA_Absolute_13ATI_fuerPanorama_2022-05-17_17-45-00.sky.zip; targetedms run ID 143368
23 Aug 2022 14:39:05,392 INFO : Updating dataFileUrl...
23 Aug 2022 14:39:05,392 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KIT%20Food%20Chemistry%20-%20Absolute%20and%20relative%20quantititation%20of%20ATIs%20in%20modified%20wheat_767936d0-0557-103b-adec-fea6ddf58494/_temp__2022-08-23_14-35-09/export/subfolders/Absolute%20quantitation/xar/experiments_and_runs.xar.exploded/Run135969/20220517_CRISPR-Cas_totalProtein_SIDA_Absolute_13ATI_fuerPanorama_2022-05-17_17-45-00/20220517_CRISPR-Cas_totalProtein_SIDA_Absolute_13ATI_fuerPanorama.skyd
23 Aug 2022 14:39:05,392 INFO : to: file:///data/labkey/files/Panorama%20Public/2022/KIT%20Food%20Chemistry%20-%20Absolute%20and%20relative%20quantititation%20of%20ATIs%20in%20modified%20wheat/Absolute%20quantitation/@files/20220517_CRISPR-Cas_totalProtein_SIDA_Absolute_13ATI_fuerPanorama_2022-05-17_17-45-00/20220517_CRISPR-Cas_totalProtein_SIDA_Absolute_13ATI_fuerPanorama.skyd
23 Aug 2022 14:39:05,393 INFO : Updating dataFileUrl...
23 Aug 2022 14:39:05,393 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KIT%20Food%20Chemistry%20-%20Absolute%20and%20relative%20quantititation%20of%20ATIs%20in%20modified%20wheat_767936d0-0557-103b-adec-fea6ddf58494/_temp__2022-08-23_14-35-09/export/subfolders/Absolute%20quantitation/xar/experiments_and_runs.xar.exploded/Run135969/20220517_CRISPR-Cas_totalProtein_SIDA_Absolute_13ATI_fuerPanorama_2022-05-17_17-45-00.sky.zip
23 Aug 2022 14:39:05,393 INFO : to: file:///data/labkey/files/Panorama%20Public/2022/KIT%20Food%20Chemistry%20-%20Absolute%20and%20relative%20quantititation%20of%20ATIs%20in%20modified%20wheat/Absolute%20quantitation/@files/20220517_CRISPR-Cas_totalProtein_SIDA_Absolute_13ATI_fuerPanorama_2022-05-17_17-45-00.sky.zip
23 Aug 2022 14:39:05,396 INFO : Updating dataFileUrls for run 20220517_CRISPR_TEP_T_Orbitrap_MQ_Skyline_fuerPanorama_2022-05-17_17-53-29.sky.zip; targetedms run ID 143369
23 Aug 2022 14:39:05,396 INFO : Updating dataFileUrl...
23 Aug 2022 14:39:05,396 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KIT%20Food%20Chemistry%20-%20Absolute%20and%20relative%20quantititation%20of%20ATIs%20in%20modified%20wheat_767936d0-0557-103b-adec-fea6ddf58494/_temp__2022-08-23_14-35-09/export/subfolders/Relative%20quantitation%20using%20Skyline/xar/experiments_and_runs.xar.exploded/Run135971/20220517_CRISPR_TEP_T_Orbitrap_MQ_Skyline_fuerPanorama_2022-05-17_17-53-29.sky.zip
23 Aug 2022 14:39:05,396 INFO : to: file:///data/labkey/files/Panorama%20Public/2022/KIT%20Food%20Chemistry%20-%20Absolute%20and%20relative%20quantititation%20of%20ATIs%20in%20modified%20wheat/Relative%20quantitation%20using%20Skyline/@files/20220517_CRISPR_TEP_T_Orbitrap_MQ_Skyline_fuerPanorama_2022-05-17_17-53-29.sky.zip
23 Aug 2022 14:39:05,397 INFO : Updating dataFileUrl...
23 Aug 2022 14:39:05,397 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/KIT%20Food%20Chemistry%20-%20Absolute%20and%20relative%20quantititation%20of%20ATIs%20in%20modified%20wheat_767936d0-0557-103b-adec-fea6ddf58494/_temp__2022-08-23_14-35-09/export/subfolders/Relative%20quantitation%20using%20Skyline/xar/experiments_and_runs.xar.exploded/Run135971/20220517_CRISPR_TEP_T_Orbitrap_MQ_Skyline_fuerPanorama_2022-05-17_17-53-29/20220517_CRISPR_TEP_T_Orbitrap_MQ_Skyline_fuerPanorama.skyd
23 Aug 2022 14:39:05,397 INFO : to: file:///data/labkey/files/Panorama%20Public/2022/KIT%20Food%20Chemistry%20-%20Absolute%20and%20relative%20quantititation%20of%20ATIs%20in%20modified%20wheat/Relative%20quantitation%20using%20Skyline/@files/20220517_CRISPR_TEP_T_Orbitrap_MQ_Skyline_fuerPanorama_2022-05-17_17-53-29/20220517_CRISPR_TEP_T_Orbitrap_MQ_Skyline_fuerPanorama.skyd
23 Aug 2022 14:39:05,406 INFO : Making folder public.
23 Aug 2022 14:39:05,412 INFO : Hiding the Data Pipeline tab.
23 Aug 2022 14:39:05,425 INFO : Updating Submission. Setting copiedExperimentId to 1491
23 Aug 2022 14:39:05,483 INFO : Emailing submitter.
23 Aug 2022 14:39:05,564 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'