24 Sep 2022 15:21:11,928 INFO : Copying experiment "Differential isotope labelling by amino acids (DILAC) reveals metabolic cross-feeding and phenotypic heterogeneity in a clonal cell population" from folder /Francis Crick Institute - Ralser Lab/20200918_MRM_combinations/Kamrad_et_al_13Cproteomics_metabolic_heterogeneity to /Panorama Public/2022/Francis Crick Institute Ralser Lab - Kamrad_et_al_13Cproteomics_metabolic_heterogeneity

24 Sep 2022 15:21:11,928 INFO : =======================================

24 Sep 2022 15:21:11,995 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'

24 Sep 2022 15:21:11,995 INFO : 

24 Sep 2022 15:21:11,995 INFO : Exporting experiment.

24 Sep 2022 15:23:37,240 INFO : Exporting files metadata.

24 Sep 2022 15:23:37,240 DEBUG: [/Francis Crick Institute - Ralser Lab/20200918_MRM_combinations/Kamrad_et_al_13Cproteomics_metabolic_heterogeneity]  Writing files metadata to /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis Crick Institute Ralser Lab - Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export

24 Sep 2022 15:23:37,303 DEBUG: [/Francis Crick Institute - Ralser Lab/20200918_MRM_combinations/Kamrad_et_al_13Cproteomics_metabolic_heterogeneity/Dataset2_lysine_colony_timecourse_gluC]  Writing files metadata to /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis Crick Institute Ralser Lab - Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/Dataset2_lysine_colony_timecourse_gluC

24 Sep 2022 15:23:37,345 DEBUG: [/Francis Crick Institute - Ralser Lab/20200918_MRM_combinations/Kamrad_et_al_13Cproteomics_metabolic_heterogeneity/ExtendedView_lysine_colony_timecourse_missedCleavage]  Writing files metadata to /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis Crick Institute Ralser Lab - Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/ExtendedView_lysine_colony_timecourse_missedCleavage

24 Sep 2022 15:23:37,379 DEBUG: [/Francis Crick Institute - Ralser Lab/20200918_MRM_combinations/Kamrad_et_al_13Cproteomics_metabolic_heterogeneity/ExtendedView_lysine_liquid_timecourse]  Writing files metadata to /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis Crick Institute Ralser Lab - Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/ExtendedView_lysine_liquid_timecourse

24 Sep 2022 15:23:37,405 DEBUG: [/Francis Crick Institute - Ralser Lab/20200918_MRM_combinations/Kamrad_et_al_13Cproteomics_metabolic_heterogeneity/ExtendedView_otherAA_colony_timecourse]  Writing files metadata to /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis Crick Institute Ralser Lab - Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/ExtendedView_otherAA_colony_timecourse

24 Sep 2022 15:23:37,446 INFO : 

24 Sep 2022 15:23:37,446 INFO : Experiment export completed successfully.

24 Sep 2022 15:23:37,446 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'

24 Sep 2022 15:23:37,486 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'

24 Sep 2022 15:23:37,486 INFO : 

24 Sep 2022 15:23:37,486 INFO : Importing experiment.

24 Sep 2022 15:23:37,488 DEBUG: [/Panorama Public/2022/Francis Crick Institute Ralser Lab - Kamrad_et_al_13Cproteomics_metabolic_heterogeneity] Importing folder properties from: /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis Crick Institute Ralser Lab - Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export

24 Sep 2022 15:23:37,490 INFO : Loading folder properties (folder type, settings and active modules)

24 Sep 2022 15:23:37,490 DEBUG: [/Panorama Public/2022/Francis Crick Institute Ralser Lab - Kamrad_et_al_13Cproteomics_metabolic_heterogeneity] Folder type: Targeted MS

24 Sep 2022 15:23:37,490 DEBUG: [/Panorama Public/2022/Francis Crick Institute Ralser Lab - Kamrad_et_al_13Cproteomics_metabolic_heterogeneity] Active modules: API, TargetedMS, Wiki, Announcements, Issues, MS2, PanoramaPublic, Query, Internal, FileContent, Experiment, Pipeline, Core, Search, Assay

24 Sep 2022 15:23:37,575 INFO : Done importing folder properties (folder type, settings and active modules)

24 Sep 2022 15:23:37,577 INFO : Loading container specific module properties

24 Sep 2022 15:23:37,589 INFO : Done importing container specific module properties

24 Sep 2022 15:23:37,592 INFO : Loading grid views

24 Sep 2022 15:23:37,600 INFO : 1 custom view imported

24 Sep 2022 15:23:37,601 INFO : Done importing grid views

24 Sep 2022 15:23:37,603 INFO : Loading etl definitions

24 Sep 2022 15:23:37,606 INFO : Loading wikis

24 Sep 2022 15:23:37,617 INFO : 1 wiki imported

24 Sep 2022 15:23:37,617 INFO : Done importing wikis

24 Sep 2022 15:23:37,617 INFO : Starting to copy files

24 Sep 2022 15:23:57,963 INFO : Copied 98 files

24 Sep 2022 15:23:57,963 INFO : Ensuring exp.data rows exist for imported files

24 Sep 2022 15:23:58,405 INFO : Starting Sample Type and Data Class import

24 Sep 2022 15:23:58,405 INFO : No types XAR file to process.

24 Sep 2022 15:23:58,405 INFO : Finished importing Sample Types and Data Classes

24 Sep 2022 15:23:58,407 INFO : Loading xar

24 Sep 2022 15:23:58,422 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-10743:TargetedMS.ImportSkyZip'

24 Sep 2022 15:23:58,424 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-10743:TargetedMS.ImportSkyZip.Core'

24 Sep 2022 15:23:58,426 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-10743:TargetedMS.ImportSkyZip.Output'

24 Sep 2022 15:23:58,426 DEBUG: Protocol import complete

24 Sep 2022 15:23:58,428 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-10743:Differential+isotope+labelling+by+amino+acids+%28DILAC%29+reveals+metabolic+cross-feeding+and+phenotypic+heterogeneity+in+a+clonal+cell+population'

24 Sep 2022 15:23:58,428 DEBUG: Experiment/Run group import complete

24 Sep 2022 15:23:58,437 DEBUG: Protocol action set import complete

24 Sep 2022 15:23:58,439 INFO : Done importing xar

24 Sep 2022 15:23:58,440 INFO : Loading pages and webpart properties

24 Sep 2022 15:23:58,520 INFO : Done importing 4 page(s) with 7 webpart(s)

24 Sep 2022 15:23:58,522 INFO : Starting Sample Status Data import

24 Sep 2022 15:23:58,522 INFO : No sample types XAR file to process.

24 Sep 2022 15:23:58,522 INFO : Finished importing Sample Status Data

24 Sep 2022 15:23:58,527 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType

24 Sep 2022 15:23:58,531 INFO : A row containing [Description: 'null', Color: '800000', Name: 'Reagent Change'] values already exists. Skipping

24 Sep 2022 15:23:58,531 INFO : A row containing [Description: 'null', Color: 'FF0000', Name: 'Instrumentation Change'] values already exists. Skipping

24 Sep 2022 15:23:58,532 INFO : A row containing [Description: 'null', Color: '0000FF', Name: 'Technician Change'] values already exists. Skipping

24 Sep 2022 15:23:58,532 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType

24 Sep 2022 15:23:58,533 INFO : Loading subfolders and container tabs

24 Sep 2022 15:23:58,583 INFO : New folder created with inherited permissions: /Panorama Public/2022/Francis Crick Institute Ralser Lab - Kamrad_et_al_13Cproteomics_metabolic_heterogeneity/Dataset2_lysine_colony_timecourse_gluC

24 Sep 2022 15:23:58,583 INFO : Loading folder archive for Dataset2_lysine_colony_timecourse_gluC

24 Sep 2022 15:23:58,583 DEBUG: [/Panorama Public/2022/Francis Crick Institute Ralser Lab - Kamrad_et_al_13Cproteomics_metabolic_heterogeneity/Dataset2_lysine_colony_timecourse_gluC] Importing folder properties from: /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis Crick Institute Ralser Lab - Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/Dataset2_lysine_colony_timecourse_gluC

24 Sep 2022 15:23:58,585 INFO : Loading folder properties (folder type, settings and active modules)

24 Sep 2022 15:23:58,585 DEBUG: [/Panorama Public/2022/Francis Crick Institute Ralser Lab - Kamrad_et_al_13Cproteomics_metabolic_heterogeneity/Dataset2_lysine_colony_timecourse_gluC] Folder type: Targeted MS

24 Sep 2022 15:23:58,585 DEBUG: [/Panorama Public/2022/Francis Crick Institute Ralser Lab - Kamrad_et_al_13Cproteomics_metabolic_heterogeneity/Dataset2_lysine_colony_timecourse_gluC] Active modules: API, TargetedMS, Wiki, Announcements, Issues, MS2, PanoramaPublic, Query, Internal, FileContent, Experiment, Pipeline, Core, Search, Assay

24 Sep 2022 15:23:58,646 INFO : Done importing folder properties (folder type, settings and active modules)

24 Sep 2022 15:23:58,647 INFO : Loading container specific module properties

24 Sep 2022 15:23:58,658 INFO : Done importing container specific module properties

24 Sep 2022 15:23:58,659 INFO : Loading etl definitions

24 Sep 2022 15:23:58,660 INFO : Loading wikis

24 Sep 2022 15:23:58,661 INFO : 0 wikis imported

24 Sep 2022 15:23:58,662 INFO : Done importing wikis

24 Sep 2022 15:23:58,662 INFO : Starting to copy files

24 Sep 2022 15:24:16,710 INFO : Copied 70 files

24 Sep 2022 15:24:16,710 INFO : Ensuring exp.data rows exist for imported files

24 Sep 2022 15:24:17,016 INFO : Starting Sample Type and Data Class import

24 Sep 2022 15:24:17,016 INFO : No types XAR file to process.

24 Sep 2022 15:24:17,016 INFO : Finished importing Sample Types and Data Classes

24 Sep 2022 15:24:17,018 INFO : Loading xar

24 Sep 2022 15:24:17,155 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-10744:TargetedMS.ImportSkyZip'

24 Sep 2022 15:24:17,157 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-10744:TargetedMS.ImportSkyZip.Core'

24 Sep 2022 15:24:17,158 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-10744:TargetedMS.ImportSkyZip.Output'

24 Sep 2022 15:24:17,158 DEBUG: Protocol import complete

24 Sep 2022 15:24:17,167 DEBUG: Protocol action set import complete

24 Sep 2022 15:24:17,174 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-10744:TargetedMS.ImportSkyZip'

24 Sep 2022 15:24:17,180 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-10744:a98d1453-05cb-103b-adec-fea6ddf58494'

24 Sep 2022 15:24:17,184 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-10744:a98d1440-05cb-103b-adec-fea6ddf58494'

24 Sep 2022 15:24:17,184 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-10744:TargetedMS.ImportSkyZip.Core'

24 Sep 2022 15:24:17,186 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-10744:TargetedMS.ImportSkyZip.Output'

24 Sep 2022 15:24:17,187 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-10744:a98d1460-05cb-103b-adec-fea6ddf58494'

24 Sep 2022 15:24:17,190 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-10744:TargetedMS.ImportSkyZip'

24 Sep 2022 15:24:17,194 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-10744:566df468-1bbe-103b-adec-fea6ddf58494'

24 Sep 2022 15:24:17,197 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-10744:566df431-1bbe-103b-adec-fea6ddf58494'

24 Sep 2022 15:24:17,197 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-10744:TargetedMS.ImportSkyZip.Core'

24 Sep 2022 15:24:17,199 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-10744:TargetedMS.ImportSkyZip.Output'

24 Sep 2022 15:24:17,200 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-10744:566df4a9-1bbe-103b-adec-fea6ddf58494'

24 Sep 2022 15:24:17,203 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis%20Crick%20Institute%20Ralser%20Lab%20-%20Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/Dataset2_lysine_colony_timecourse_gluC/xar/experiments_and_runs.xar.exploded/Run141453/20210602_KgluC_labelMod_permut_2022-08-24_12-17-54/20210602_KgluC_labelMod_permut.skyd into the system

24 Sep 2022 15:24:17,204 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis%20Crick%20Institute%20Ralser%20Lab%20-%20Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/Dataset2_lysine_colony_timecourse_gluC/xar/experiments_and_runs.xar.exploded/Run141453/20210602_KgluC_labelMod_permut_2022-08-24_12-17-54/20210602_KgluC_labelMod_permut.skyd into the system

24 Sep 2022 15:24:17,204 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis%20Crick%20Institute%20Ralser%20Lab%20-%20Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/Dataset2_lysine_colony_timecourse_gluC/xar/experiments_and_runs.xar.exploded/Run141453/20210602_KgluC_labelMod_permut_2022-08-24_12-17-54.sky.zip into the system

24 Sep 2022 15:24:17,205 INFO : Starting import from 20210602_KgluC_labelMod_permut_2022-08-24_12-17-54.sky.zip

24 Sep 2022 15:24:17,208 INFO : Starting to import Skyline document from 20210602_KgluC_labelMod_permut_2022-08-24_12-17-54.sky.zip

24 Sep 2022 15:24:17,210 INFO : Expanding 20210602_KgluC_labelMod_permut.skyd

24 Sep 2022 15:24:17,265 INFO : Expanding 20210602_KgluC_labelMod_permut.sky.view

24 Sep 2022 15:24:17,266 INFO : Expanding 20210602_KgluC_labelMod_permut.sky

24 Sep 2022 15:24:17,286 INFO : 1% Done

24 Sep 2022 15:24:17,354 DEBUG: Starting to load chromatogram headers

24 Sep 2022 15:24:17,355 DEBUG: Done loading chromatogram headers

24 Sep 2022 15:24:17,574 INFO : Inserting peptides1

24 Sep 2022 15:24:17,625 INFO : 20% Done

24 Sep 2022 15:24:17,916 DEBUG: Total peptides inserted: 1

24 Sep 2022 15:24:17,916 INFO : Inserting peptides2

24 Sep 2022 15:24:17,940 INFO : 28% Done

24 Sep 2022 15:24:18,083 DEBUG: Total peptides inserted: 1

24 Sep 2022 15:24:18,083 INFO : Inserting peptides3

24 Sep 2022 15:24:18,138 INFO : 54% Done

24 Sep 2022 15:24:18,470 DEBUG: Total peptides inserted: 1

24 Sep 2022 15:24:18,470 INFO : Inserting peptides5

24 Sep 2022 15:24:18,507 INFO : 71% Done

24 Sep 2022 15:24:18,830 INFO : 98% Done

24 Sep 2022 15:24:19,217 DEBUG: Total peptides inserted: 2

24 Sep 2022 15:24:19,219 INFO : Done parsing Skyline document.

24 Sep 2022 15:24:19,221 INFO : Creating and populating temp tables for Proportion values

24 Sep 2022 15:24:19,263 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

24 Sep 2022 15:24:19,283 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

24 Sep 2022 15:24:19,286 INFO : Cleaning up temp tables

24 Sep 2022 15:24:19,531 INFO : Completed import of Skyline document from 20210602_KgluC_labelMod_permut_2022-08-24_12-17-54.sky.zip

24 Sep 2022 15:24:19,534 INFO : 100% Done

24 Sep 2022 15:24:19,539 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis%20Crick%20Institute%20Ralser%20Lab%20-%20Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/Dataset2_lysine_colony_timecourse_gluC/xar/experiments_and_runs.xar.exploded/Run141453/20210602_KgluC_labelMod_permut_2022-08-24_12-17-54.sky.zip into the system

24 Sep 2022 15:24:19,539 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis%20Crick%20Institute%20Ralser%20Lab%20-%20Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/Dataset2_lysine_colony_timecourse_gluC/xar/experiments_and_runs.xar.exploded/Run143040/20220906_KgluC_3lysine_2022-09-21_10-33-32/20220906_KgluC_3lysine.skyd into the system

24 Sep 2022 15:24:19,539 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis%20Crick%20Institute%20Ralser%20Lab%20-%20Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/Dataset2_lysine_colony_timecourse_gluC/xar/experiments_and_runs.xar.exploded/Run143040/20220906_KgluC_3lysine_2022-09-21_10-33-32/20220906_KgluC_3lysine.skyd into the system

24 Sep 2022 15:24:19,539 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis%20Crick%20Institute%20Ralser%20Lab%20-%20Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/Dataset2_lysine_colony_timecourse_gluC/xar/experiments_and_runs.xar.exploded/Run143040/20220906_KgluC_3lysine_2022-09-21_10-33-32.sky.zip into the system

24 Sep 2022 15:24:19,541 INFO : Starting import from 20220906_KgluC_3lysine_2022-09-21_10-33-32.sky.zip

24 Sep 2022 15:24:19,543 INFO : Starting to import Skyline document from 20220906_KgluC_3lysine_2022-09-21_10-33-32.sky.zip

24 Sep 2022 15:24:19,544 INFO : Expanding 20220906_KgluC_3lysine.skyd

24 Sep 2022 15:24:19,554 INFO : Expanding 20220906_KgluC_3lysine.sky.view

24 Sep 2022 15:24:19,554 INFO : Expanding 20220906_KgluC_3lysine.sky

24 Sep 2022 15:24:19,562 INFO : 2% Done

24 Sep 2022 15:24:19,572 DEBUG: Starting to load chromatogram headers

24 Sep 2022 15:24:19,572 DEBUG: Done loading chromatogram headers

24 Sep 2022 15:24:19,773 INFO : Inserting P00560

24 Sep 2022 15:24:19,784 INFO : 14% Done

24 Sep 2022 15:24:19,839 DEBUG: Total peptides inserted: 1

24 Sep 2022 15:24:19,842 INFO : 15% Done

24 Sep 2022 15:24:19,842 INFO : Inserting P06169

24 Sep 2022 15:24:19,853 INFO : 30% Done

24 Sep 2022 15:24:19,915 DEBUG: Total peptides inserted: 1

24 Sep 2022 15:24:19,915 INFO : Inserting P00330

24 Sep 2022 15:24:19,929 INFO : 48% Done

24 Sep 2022 15:24:19,996 DEBUG: Total peptides inserted: 1

24 Sep 2022 15:24:19,996 INFO : Inserting P02994

24 Sep 2022 15:24:20,009 INFO : 66% Done

24 Sep 2022 15:24:20,081 DEBUG: Total peptides inserted: 1

24 Sep 2022 15:24:20,081 INFO : Inserting P15703

24 Sep 2022 15:24:20,094 INFO : 82% Done

24 Sep 2022 15:24:20,163 DEBUG: Total peptides inserted: 1

24 Sep 2022 15:24:20,163 INFO : Inserting P14540

24 Sep 2022 15:24:20,175 INFO : 98% Done

24 Sep 2022 15:24:20,244 DEBUG: Total peptides inserted: 1

24 Sep 2022 15:24:20,246 INFO : Done parsing Skyline document.

24 Sep 2022 15:24:20,247 INFO : Creating and populating temp tables for Proportion values

24 Sep 2022 15:24:20,287 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

24 Sep 2022 15:24:20,291 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

24 Sep 2022 15:24:20,292 INFO : Cleaning up temp tables

24 Sep 2022 15:24:20,486 INFO : Completed import of Skyline document from 20220906_KgluC_3lysine_2022-09-21_10-33-32.sky.zip

24 Sep 2022 15:24:20,490 INFO : 100% Done

24 Sep 2022 15:24:20,493 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis%20Crick%20Institute%20Ralser%20Lab%20-%20Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/Dataset2_lysine_colony_timecourse_gluC/xar/experiments_and_runs.xar.exploded/Run143040/20220906_KgluC_3lysine_2022-09-21_10-33-32.sky.zip into the system

24 Sep 2022 15:24:20,504 INFO : Done importing xar

24 Sep 2022 15:24:20,505 INFO : Loading pages and webpart properties

24 Sep 2022 15:24:20,580 INFO : Done importing 4 page(s) with 7 webpart(s)

24 Sep 2022 15:24:20,581 INFO : Starting Sample Status Data import

24 Sep 2022 15:24:20,581 INFO : No sample types XAR file to process.

24 Sep 2022 15:24:20,581 INFO : Finished importing Sample Status Data

24 Sep 2022 15:24:20,586 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType

24 Sep 2022 15:24:20,588 INFO : A row containing [Description: 'null', Color: '800000', Name: 'Reagent Change'] values already exists. Skipping

24 Sep 2022 15:24:20,588 INFO : A row containing [Description: 'null', Color: 'FF0000', Name: 'Instrumentation Change'] values already exists. Skipping

24 Sep 2022 15:24:20,589 INFO : A row containing [Description: 'null', Color: '0000FF', Name: 'Technician Change'] values already exists. Skipping

24 Sep 2022 15:24:20,589 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType

24 Sep 2022 15:24:20,589 INFO : Done importing folder archive for Dataset2_lysine_colony_timecourse_gluC

24 Sep 2022 15:24:20,635 INFO : New folder created with inherited permissions: /Panorama Public/2022/Francis Crick Institute Ralser Lab - Kamrad_et_al_13Cproteomics_metabolic_heterogeneity/ExtendedView_lysine_colony_timecourse_missedCleavage

24 Sep 2022 15:24:20,635 INFO : Loading folder archive for ExtendedView_lysine_colony_timecourse_missedCleavage

24 Sep 2022 15:24:20,636 DEBUG: [/Panorama Public/2022/Francis Crick Institute Ralser Lab - Kamrad_et_al_13Cproteomics_metabolic_heterogeneity/ExtendedView_lysine_colony_timecourse_missedCleavage] Importing folder properties from: /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis Crick Institute Ralser Lab - Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/ExtendedView_lysine_colony_timecourse_missedCleavage

24 Sep 2022 15:24:20,637 INFO : Loading folder properties (folder type, settings and active modules)

24 Sep 2022 15:24:20,637 DEBUG: [/Panorama Public/2022/Francis Crick Institute Ralser Lab - Kamrad_et_al_13Cproteomics_metabolic_heterogeneity/ExtendedView_lysine_colony_timecourse_missedCleavage] Folder type: Targeted MS

24 Sep 2022 15:24:20,637 DEBUG: [/Panorama Public/2022/Francis Crick Institute Ralser Lab - Kamrad_et_al_13Cproteomics_metabolic_heterogeneity/ExtendedView_lysine_colony_timecourse_missedCleavage] Active modules: API, TargetedMS, Wiki, Announcements, Issues, MS2, PanoramaPublic, Query, Internal, FileContent, Experiment, Pipeline, Core, Search, Assay

24 Sep 2022 15:24:20,697 INFO : Done importing folder properties (folder type, settings and active modules)

24 Sep 2022 15:24:20,699 INFO : Loading container specific module properties

24 Sep 2022 15:24:20,709 INFO : Done importing container specific module properties

24 Sep 2022 15:24:20,710 INFO : Loading etl definitions

24 Sep 2022 15:24:20,712 INFO : Loading wikis

24 Sep 2022 15:24:20,713 INFO : 0 wikis imported

24 Sep 2022 15:24:20,713 INFO : Done importing wikis

24 Sep 2022 15:24:20,713 INFO : Starting to copy files

24 Sep 2022 15:24:51,695 INFO : Copied 55 files

24 Sep 2022 15:24:51,695 INFO : Ensuring exp.data rows exist for imported files

24 Sep 2022 15:24:51,937 INFO : Starting Sample Type and Data Class import

24 Sep 2022 15:24:51,938 INFO : No types XAR file to process.

24 Sep 2022 15:24:51,938 INFO : Finished importing Sample Types and Data Classes

24 Sep 2022 15:24:51,939 INFO : Loading xar

24 Sep 2022 15:24:52,047 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-10745:TargetedMS.ImportSkyZip'

24 Sep 2022 15:24:52,049 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-10745:TargetedMS.ImportSkyZip.Core'

24 Sep 2022 15:24:52,050 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-10745:TargetedMS.ImportSkyZip.Output'

24 Sep 2022 15:24:52,050 DEBUG: Protocol import complete

24 Sep 2022 15:24:52,058 DEBUG: Protocol action set import complete

24 Sep 2022 15:24:52,064 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-10745:TargetedMS.ImportSkyZip'

24 Sep 2022 15:24:52,070 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-10745:c18bf623-05e5-103b-adec-fea6ddf58494'

24 Sep 2022 15:24:52,073 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-10745:c18bf60e-05e5-103b-adec-fea6ddf58494'

24 Sep 2022 15:24:52,073 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-10745:TargetedMS.ImportSkyZip.Core'

24 Sep 2022 15:24:52,076 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-10745:TargetedMS.ImportSkyZip.Output'

24 Sep 2022 15:24:52,076 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-10745:c18bf653-05e5-103b-adec-fea6ddf58494'

24 Sep 2022 15:24:52,078 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis%20Crick%20Institute%20Ralser%20Lab%20-%20Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/ExtendedView_lysine_colony_timecourse_missedCleavage/xar/experiments_and_runs.xar.exploded/Run141463/20210810_K_missedCleavage_2022-08-24_15-23-40/20210810_K_missedCleavage.skyd into the system

24 Sep 2022 15:24:52,078 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis%20Crick%20Institute%20Ralser%20Lab%20-%20Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/ExtendedView_lysine_colony_timecourse_missedCleavage/xar/experiments_and_runs.xar.exploded/Run141463/20210810_K_missedCleavage_2022-08-24_15-23-40/20210810_K_missedCleavage.skyd into the system

24 Sep 2022 15:24:52,078 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis%20Crick%20Institute%20Ralser%20Lab%20-%20Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/ExtendedView_lysine_colony_timecourse_missedCleavage/xar/experiments_and_runs.xar.exploded/Run141463/20210810_K_missedCleavage_2022-08-24_15-23-40.sky.zip into the system

24 Sep 2022 15:24:52,079 INFO : Starting import from 20210810_K_missedCleavage_2022-08-24_15-23-40.sky.zip

24 Sep 2022 15:24:52,082 INFO : Starting to import Skyline document from 20210810_K_missedCleavage_2022-08-24_15-23-40.sky.zip

24 Sep 2022 15:24:52,084 INFO : Expanding 20210810_K_missedCleavage.skyd

24 Sep 2022 15:24:52,131 INFO : Expanding 20210810_K_missedCleavage.sky.view

24 Sep 2022 15:24:52,131 INFO : Expanding 20210810_K_missedCleavage.sky

24 Sep 2022 15:24:52,144 INFO : 2% Done

24 Sep 2022 15:24:52,194 DEBUG: Starting to load chromatogram headers

24 Sep 2022 15:24:52,194 DEBUG: Done loading chromatogram headers

24 Sep 2022 15:24:52,424 INFO : Inserting peptides2

24 Sep 2022 15:24:52,501 INFO : 33% Done

24 Sep 2022 15:24:52,777 DEBUG: Total peptides inserted: 1

24 Sep 2022 15:24:52,777 INFO : Inserting peptides6

24 Sep 2022 15:24:52,858 INFO : 68% Done

24 Sep 2022 15:24:53,166 DEBUG: Total peptides inserted: 1

24 Sep 2022 15:24:53,166 INFO : Inserting peptides7

24 Sep 2022 15:24:53,244 INFO : 98% Done

24 Sep 2022 15:24:53,572 DEBUG: Total peptides inserted: 1

24 Sep 2022 15:24:53,574 INFO : Done parsing Skyline document.

24 Sep 2022 15:24:53,576 INFO : Creating and populating temp tables for Proportion values

24 Sep 2022 15:24:53,621 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

24 Sep 2022 15:24:53,635 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

24 Sep 2022 15:24:53,638 INFO : Cleaning up temp tables

24 Sep 2022 15:24:53,860 INFO : Completed import of Skyline document from 20210810_K_missedCleavage_2022-08-24_15-23-40.sky.zip

24 Sep 2022 15:24:53,863 INFO : 100% Done

24 Sep 2022 15:24:53,869 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis%20Crick%20Institute%20Ralser%20Lab%20-%20Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/ExtendedView_lysine_colony_timecourse_missedCleavage/xar/experiments_and_runs.xar.exploded/Run141463/20210810_K_missedCleavage_2022-08-24_15-23-40.sky.zip into the system

24 Sep 2022 15:24:53,875 INFO : Done importing xar

24 Sep 2022 15:24:53,876 INFO : Loading pages and webpart properties

24 Sep 2022 15:24:53,956 INFO : Done importing 4 page(s) with 7 webpart(s)

24 Sep 2022 15:24:53,958 INFO : Starting Sample Status Data import

24 Sep 2022 15:24:53,958 INFO : No sample types XAR file to process.

24 Sep 2022 15:24:53,958 INFO : Finished importing Sample Status Data

24 Sep 2022 15:24:53,963 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType

24 Sep 2022 15:24:53,966 INFO : A row containing [Description: 'null', Color: '800000', Name: 'Reagent Change'] values already exists. Skipping

24 Sep 2022 15:24:53,967 INFO : A row containing [Description: 'null', Color: 'FF0000', Name: 'Instrumentation Change'] values already exists. Skipping

24 Sep 2022 15:24:53,967 INFO : A row containing [Description: 'null', Color: '0000FF', Name: 'Technician Change'] values already exists. Skipping

24 Sep 2022 15:24:53,967 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType

24 Sep 2022 15:24:53,967 INFO : Done importing folder archive for ExtendedView_lysine_colony_timecourse_missedCleavage

24 Sep 2022 15:24:54,022 INFO : New folder created with inherited permissions: /Panorama Public/2022/Francis Crick Institute Ralser Lab - Kamrad_et_al_13Cproteomics_metabolic_heterogeneity/ExtendedView_lysine_liquid_timecourse

24 Sep 2022 15:24:54,022 INFO : Loading folder archive for ExtendedView_lysine_liquid_timecourse

24 Sep 2022 15:24:54,022 DEBUG: [/Panorama Public/2022/Francis Crick Institute Ralser Lab - Kamrad_et_al_13Cproteomics_metabolic_heterogeneity/ExtendedView_lysine_liquid_timecourse] Importing folder properties from: /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis Crick Institute Ralser Lab - Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/ExtendedView_lysine_liquid_timecourse

24 Sep 2022 15:24:54,024 INFO : Loading folder properties (folder type, settings and active modules)

24 Sep 2022 15:24:54,024 DEBUG: [/Panorama Public/2022/Francis Crick Institute Ralser Lab - Kamrad_et_al_13Cproteomics_metabolic_heterogeneity/ExtendedView_lysine_liquid_timecourse] Folder type: Targeted MS

24 Sep 2022 15:24:54,024 DEBUG: [/Panorama Public/2022/Francis Crick Institute Ralser Lab - Kamrad_et_al_13Cproteomics_metabolic_heterogeneity/ExtendedView_lysine_liquid_timecourse] Active modules: API, TargetedMS, Wiki, Announcements, Issues, MS2, PanoramaPublic, Query, Internal, FileContent, Experiment, Pipeline, Core, Search, Assay

24 Sep 2022 15:24:54,099 INFO : Done importing folder properties (folder type, settings and active modules)

24 Sep 2022 15:24:54,101 INFO : Loading container specific module properties

24 Sep 2022 15:24:54,111 INFO : Done importing container specific module properties

24 Sep 2022 15:24:54,112 INFO : Loading etl definitions

24 Sep 2022 15:24:54,113 INFO : Loading wikis

24 Sep 2022 15:24:54,115 INFO : 0 wikis imported

24 Sep 2022 15:24:54,115 INFO : Done importing wikis

24 Sep 2022 15:24:54,115 INFO : Starting to copy files

24 Sep 2022 15:25:00,774 INFO : Copied 44 files

24 Sep 2022 15:25:00,774 INFO : Ensuring exp.data rows exist for imported files

24 Sep 2022 15:25:00,975 INFO : Starting Sample Type and Data Class import

24 Sep 2022 15:25:00,975 INFO : No types XAR file to process.

24 Sep 2022 15:25:00,975 INFO : Finished importing Sample Types and Data Classes

24 Sep 2022 15:25:00,977 INFO : Loading xar

24 Sep 2022 15:25:01,047 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-10746:TargetedMS.ImportSkyZip'

24 Sep 2022 15:25:01,049 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-10746:TargetedMS.ImportSkyZip.Core'

24 Sep 2022 15:25:01,050 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-10746:TargetedMS.ImportSkyZip.Output'

24 Sep 2022 15:25:01,050 DEBUG: Protocol import complete

24 Sep 2022 15:25:01,058 DEBUG: Protocol action set import complete

24 Sep 2022 15:25:01,063 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-10746:TargetedMS.ImportSkyZip'

24 Sep 2022 15:25:01,068 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-10746:b6e45fce-05d1-103b-adec-fea6ddf58494'

24 Sep 2022 15:25:01,071 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-10746:b6e45f82-05d1-103b-adec-fea6ddf58494'

24 Sep 2022 15:25:01,071 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-10746:TargetedMS.ImportSkyZip.Core'

24 Sep 2022 15:25:01,073 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-10746:TargetedMS.ImportSkyZip.Output'

24 Sep 2022 15:25:01,074 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-10746:b6e46017-05d1-103b-adec-fea6ddf58494'

24 Sep 2022 15:25:01,075 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis%20Crick%20Institute%20Ralser%20Lab%20-%20Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/ExtendedView_lysine_liquid_timecourse/xar/experiments_and_runs.xar.exploded/Run141458/20210923_K_missedCleavage_2022-08-24_12-59-30/20210923_K_missedCleavage.skyd into the system

24 Sep 2022 15:25:01,076 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis%20Crick%20Institute%20Ralser%20Lab%20-%20Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/ExtendedView_lysine_liquid_timecourse/xar/experiments_and_runs.xar.exploded/Run141458/20210923_K_missedCleavage_2022-08-24_12-59-30/20210923_K_missedCleavage.skyd into the system

24 Sep 2022 15:25:01,076 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis%20Crick%20Institute%20Ralser%20Lab%20-%20Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/ExtendedView_lysine_liquid_timecourse/xar/experiments_and_runs.xar.exploded/Run141458/20210923_K_missedCleavage_2022-08-24_12-59-30.sky.zip into the system

24 Sep 2022 15:25:01,078 INFO : Starting import from 20210923_K_missedCleavage_2022-08-24_12-59-30.sky.zip

24 Sep 2022 15:25:01,082 INFO : Starting to import Skyline document from 20210923_K_missedCleavage_2022-08-24_12-59-30.sky.zip

24 Sep 2022 15:25:01,083 INFO : Expanding 20210923_K_missedCleavage.skyd

24 Sep 2022 15:25:01,121 INFO : Expanding 20210923_K_missedCleavage.sky.view

24 Sep 2022 15:25:01,121 INFO : Expanding 20210923_K_missedCleavage.sky

24 Sep 2022 15:25:01,131 INFO : 2% Done

24 Sep 2022 15:25:01,202 DEBUG: Starting to load chromatogram headers

24 Sep 2022 15:25:01,203 DEBUG: Done loading chromatogram headers

24 Sep 2022 15:25:01,436 INFO : Inserting peptides2

24 Sep 2022 15:25:01,479 INFO : 35% Done

24 Sep 2022 15:25:01,688 DEBUG: Total peptides inserted: 1

24 Sep 2022 15:25:01,688 INFO : Inserting peptides7

24 Sep 2022 15:25:01,733 INFO : 68% Done

24 Sep 2022 15:25:02,005 DEBUG: Total peptides inserted: 1

24 Sep 2022 15:25:02,005 INFO : Inserting peptides1

24 Sep 2022 15:25:02,044 INFO : 98% Done

24 Sep 2022 15:25:02,283 DEBUG: Total peptides inserted: 1

24 Sep 2022 15:25:02,284 INFO : Done parsing Skyline document.

24 Sep 2022 15:25:02,286 INFO : Creating and populating temp tables for Proportion values

24 Sep 2022 15:25:02,326 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

24 Sep 2022 15:25:02,336 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

24 Sep 2022 15:25:02,338 INFO : Cleaning up temp tables

24 Sep 2022 15:25:02,545 INFO : Completed import of Skyline document from 20210923_K_missedCleavage_2022-08-24_12-59-30.sky.zip

24 Sep 2022 15:25:02,548 INFO : 100% Done

24 Sep 2022 15:25:02,552 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis%20Crick%20Institute%20Ralser%20Lab%20-%20Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/ExtendedView_lysine_liquid_timecourse/xar/experiments_and_runs.xar.exploded/Run141458/20210923_K_missedCleavage_2022-08-24_12-59-30.sky.zip into the system

24 Sep 2022 15:25:02,558 INFO : Done importing xar

24 Sep 2022 15:25:02,559 INFO : Loading pages and webpart properties

24 Sep 2022 15:25:02,643 INFO : Done importing 4 page(s) with 7 webpart(s)

24 Sep 2022 15:25:02,645 INFO : Starting Sample Status Data import

24 Sep 2022 15:25:02,645 INFO : No sample types XAR file to process.

24 Sep 2022 15:25:02,645 INFO : Finished importing Sample Status Data

24 Sep 2022 15:25:02,651 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType

24 Sep 2022 15:25:02,654 INFO : A row containing [Description: 'null', Color: '800000', Name: 'Reagent Change'] values already exists. Skipping

24 Sep 2022 15:25:02,655 INFO : A row containing [Description: 'null', Color: 'FF0000', Name: 'Instrumentation Change'] values already exists. Skipping

24 Sep 2022 15:25:02,655 INFO : A row containing [Description: 'null', Color: '0000FF', Name: 'Technician Change'] values already exists. Skipping

24 Sep 2022 15:25:02,655 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType

24 Sep 2022 15:25:02,655 INFO : Done importing folder archive for ExtendedView_lysine_liquid_timecourse

24 Sep 2022 15:25:02,709 INFO : New folder created with inherited permissions: /Panorama Public/2022/Francis Crick Institute Ralser Lab - Kamrad_et_al_13Cproteomics_metabolic_heterogeneity/ExtendedView_otherAA_colony_timecourse

24 Sep 2022 15:25:02,709 INFO : Loading folder archive for ExtendedView_otherAA_colony_timecourse

24 Sep 2022 15:25:02,709 DEBUG: [/Panorama Public/2022/Francis Crick Institute Ralser Lab - Kamrad_et_al_13Cproteomics_metabolic_heterogeneity/ExtendedView_otherAA_colony_timecourse] Importing folder properties from: /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis Crick Institute Ralser Lab - Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/ExtendedView_otherAA_colony_timecourse

24 Sep 2022 15:25:02,711 INFO : Loading folder properties (folder type, settings and active modules)

24 Sep 2022 15:25:02,711 DEBUG: [/Panorama Public/2022/Francis Crick Institute Ralser Lab - Kamrad_et_al_13Cproteomics_metabolic_heterogeneity/ExtendedView_otherAA_colony_timecourse] Folder type: Targeted MS

24 Sep 2022 15:25:02,711 DEBUG: [/Panorama Public/2022/Francis Crick Institute Ralser Lab - Kamrad_et_al_13Cproteomics_metabolic_heterogeneity/ExtendedView_otherAA_colony_timecourse] Active modules: API, TargetedMS, Wiki, Announcements, Issues, MS2, PanoramaPublic, Query, Internal, FileContent, Experiment, Pipeline, Core, Search, Assay

24 Sep 2022 15:25:02,783 INFO : Done importing folder properties (folder type, settings and active modules)

24 Sep 2022 15:25:02,785 INFO : Loading container specific module properties

24 Sep 2022 15:25:02,796 INFO : Done importing container specific module properties

24 Sep 2022 15:25:02,798 INFO : Loading grid views

24 Sep 2022 15:25:02,802 INFO : 1 custom view imported

24 Sep 2022 15:25:02,802 INFO : Done importing grid views

24 Sep 2022 15:25:02,804 INFO : Loading etl definitions

24 Sep 2022 15:25:02,805 INFO : Loading wikis

24 Sep 2022 15:25:02,806 INFO : 0 wikis imported

24 Sep 2022 15:25:02,806 INFO : Done importing wikis

24 Sep 2022 15:25:02,806 INFO : Starting to copy files

24 Sep 2022 15:25:54,394 INFO : Copied 90 files

24 Sep 2022 15:25:54,394 INFO : Ensuring exp.data rows exist for imported files

24 Sep 2022 15:25:54,788 INFO : Starting Sample Type and Data Class import

24 Sep 2022 15:25:54,788 INFO : No types XAR file to process.

24 Sep 2022 15:25:54,788 INFO : Finished importing Sample Types and Data Classes

24 Sep 2022 15:25:54,789 INFO : Loading xar

24 Sep 2022 15:25:54,943 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-10747:TargetedMS.ImportSkyZip'

24 Sep 2022 15:25:54,945 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-10747:TargetedMS.ImportSkyZip.Core'

24 Sep 2022 15:25:54,947 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-10747:TargetedMS.ImportSkyZip.Output'

24 Sep 2022 15:25:54,947 DEBUG: Protocol import complete

24 Sep 2022 15:25:54,956 DEBUG: Protocol action set import complete

24 Sep 2022 15:25:54,962 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-10747:TargetedMS.ImportSkyZip'

24 Sep 2022 15:25:54,968 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-10747:72211b3b-075f-103b-adec-fea6ddf58494'

24 Sep 2022 15:25:54,971 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-10747:72211b24-075f-103b-adec-fea6ddf58494'

24 Sep 2022 15:25:54,971 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-10747:TargetedMS.ImportSkyZip.Core'

24 Sep 2022 15:25:54,974 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-10747:TargetedMS.ImportSkyZip.Output'

24 Sep 2022 15:25:54,974 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-10747:72211b52-075f-103b-adec-fea6ddf58494'

24 Sep 2022 15:25:54,978 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-10747:TargetedMS.ImportSkyZip'

24 Sep 2022 15:25:54,981 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-10747:d9fcfadb-077d-103b-adec-fea6ddf58494'

24 Sep 2022 15:25:54,986 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-10747:d9fcfacc-077d-103b-adec-fea6ddf58494'

24 Sep 2022 15:25:54,986 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-10747:TargetedMS.ImportSkyZip.Core'

24 Sep 2022 15:25:54,987 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-10747:TargetedMS.ImportSkyZip.Output'

24 Sep 2022 15:25:54,988 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-10747:d9fcfaed-077d-103b-adec-fea6ddf58494'

24 Sep 2022 15:25:54,991 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-10747:TargetedMS.ImportSkyZip'

24 Sep 2022 15:25:54,995 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-10747:d9fd0b8e-077d-103b-adec-fea6ddf58494'

24 Sep 2022 15:25:54,998 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-10747:d9fd0b75-077d-103b-adec-fea6ddf58494'

24 Sep 2022 15:25:54,998 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-10747:TargetedMS.ImportSkyZip.Core'

24 Sep 2022 15:25:54,999 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-10747:TargetedMS.ImportSkyZip.Output'

24 Sep 2022 15:25:55,000 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-10747:d9fd0ba9-077d-103b-adec-fea6ddf58494'

24 Sep 2022 15:25:55,001 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis%20Crick%20Institute%20Ralser%20Lab%20-%20Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/ExtendedView_otherAA_colony_timecourse/xar/experiments_and_runs.xar.exploded/Run141527/20220825_N_2022-08-26_12-34-34/20220825_N.skyd into the system

24 Sep 2022 15:25:55,001 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis%20Crick%20Institute%20Ralser%20Lab%20-%20Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/ExtendedView_otherAA_colony_timecourse/xar/experiments_and_runs.xar.exploded/Run141527/20220825_N_2022-08-26_12-34-34/20220825_N.skyd into the system

24 Sep 2022 15:25:55,001 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis%20Crick%20Institute%20Ralser%20Lab%20-%20Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/ExtendedView_otherAA_colony_timecourse/xar/experiments_and_runs.xar.exploded/Run141527/20220825_N_2022-08-26_12-34-34.sky.zip into the system

24 Sep 2022 15:25:55,002 INFO : Starting import from 20220825_N_2022-08-26_12-34-34.sky.zip

24 Sep 2022 15:25:55,006 INFO : Starting to import Skyline document from 20220825_N_2022-08-26_12-34-34.sky.zip

24 Sep 2022 15:25:55,007 INFO : Expanding 20220825_N.skyd

24 Sep 2022 15:25:55,035 INFO : Expanding 20220825_N.sky.view

24 Sep 2022 15:25:55,036 INFO : Expanding 20220825_N.sky

24 Sep 2022 15:25:55,046 INFO : 1% Done

24 Sep 2022 15:25:55,076 DEBUG: Starting to load chromatogram headers

24 Sep 2022 15:25:55,077 DEBUG: Done loading chromatogram headers

24 Sep 2022 15:25:55,306 INFO : Inserting peptides1

24 Sep 2022 15:25:55,345 INFO : 26% Done

24 Sep 2022 15:25:55,524 DEBUG: Total peptides inserted: 1

24 Sep 2022 15:25:55,524 INFO : Inserting peptides2

24 Sep 2022 15:25:55,564 INFO : 50% Done

24 Sep 2022 15:25:55,734 DEBUG: Total peptides inserted: 1

24 Sep 2022 15:25:55,734 INFO : Inserting peptides3

24 Sep 2022 15:25:55,774 INFO : 74% Done

24 Sep 2022 15:25:55,912 DEBUG: Total peptides inserted: 1

24 Sep 2022 15:25:55,912 INFO : Inserting peptides4

24 Sep 2022 15:25:55,950 INFO : 98% Done

24 Sep 2022 15:25:56,086 DEBUG: Total peptides inserted: 1

24 Sep 2022 15:25:56,087 INFO : Done parsing Skyline document.

24 Sep 2022 15:25:56,088 INFO : Creating and populating temp tables for Proportion values

24 Sep 2022 15:25:56,127 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

24 Sep 2022 15:25:56,134 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

24 Sep 2022 15:25:56,136 INFO : Cleaning up temp tables

24 Sep 2022 15:25:56,375 INFO : Completed import of Skyline document from 20220825_N_2022-08-26_12-34-34.sky.zip

24 Sep 2022 15:25:56,378 INFO : 100% Done

24 Sep 2022 15:25:56,383 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis%20Crick%20Institute%20Ralser%20Lab%20-%20Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/ExtendedView_otherAA_colony_timecourse/xar/experiments_and_runs.xar.exploded/Run141527/20220825_N_2022-08-26_12-34-34.sky.zip into the system

24 Sep 2022 15:25:56,383 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis%20Crick%20Institute%20Ralser%20Lab%20-%20Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/ExtendedView_otherAA_colony_timecourse/xar/experiments_and_runs.xar.exploded/Run141534/20220824_F_2022-08-26_16-01-27/20220824_F.skyd into the system

24 Sep 2022 15:25:56,383 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis%20Crick%20Institute%20Ralser%20Lab%20-%20Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/ExtendedView_otherAA_colony_timecourse/xar/experiments_and_runs.xar.exploded/Run141534/20220824_F_2022-08-26_16-01-27/20220824_F.skyd into the system

24 Sep 2022 15:25:56,383 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis%20Crick%20Institute%20Ralser%20Lab%20-%20Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/ExtendedView_otherAA_colony_timecourse/xar/experiments_and_runs.xar.exploded/Run141534/20220824_F_2022-08-26_16-01-27.sky.zip into the system

24 Sep 2022 15:25:56,385 INFO : Starting import from 20220824_F_2022-08-26_16-01-27.sky.zip

24 Sep 2022 15:25:56,388 INFO : Starting to import Skyline document from 20220824_F_2022-08-26_16-01-27.sky.zip

24 Sep 2022 15:25:56,389 INFO : Expanding 20220824_F.skyd

24 Sep 2022 15:25:56,410 INFO : Expanding 20220824_F.sky.view

24 Sep 2022 15:25:56,410 INFO : Expanding 20220824_F.sky

24 Sep 2022 15:25:56,419 INFO : 2% Done

24 Sep 2022 15:25:56,439 DEBUG: Starting to load chromatogram headers

24 Sep 2022 15:25:56,439 DEBUG: Done loading chromatogram headers

24 Sep 2022 15:25:56,651 INFO : Inserting peptides1

24 Sep 2022 15:25:56,685 INFO : 31% Done

24 Sep 2022 15:25:56,771 DEBUG: Total peptides inserted: 1

24 Sep 2022 15:25:56,772 INFO : Inserting peptides2

24 Sep 2022 15:25:56,800 INFO : 52% Done

24 Sep 2022 15:25:56,873 DEBUG: Total peptides inserted: 1

24 Sep 2022 15:25:56,873 INFO : Inserting peptides3

24 Sep 2022 15:25:56,912 INFO : 78% Done

24 Sep 2022 15:25:57,002 DEBUG: Total peptides inserted: 1

24 Sep 2022 15:25:57,002 INFO : Inserting peptides4

24 Sep 2022 15:25:57,028 INFO : 98% Done

24 Sep 2022 15:25:57,093 DEBUG: Total peptides inserted: 1

24 Sep 2022 15:25:57,096 INFO : Done parsing Skyline document.

24 Sep 2022 15:25:57,097 INFO : Creating and populating temp tables for Proportion values

24 Sep 2022 15:25:57,137 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

24 Sep 2022 15:25:57,144 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

24 Sep 2022 15:25:57,146 INFO : Cleaning up temp tables

24 Sep 2022 15:25:57,352 INFO : Completed import of Skyline document from 20220824_F_2022-08-26_16-01-27.sky.zip

24 Sep 2022 15:25:57,354 INFO : 100% Done

24 Sep 2022 15:25:57,358 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis%20Crick%20Institute%20Ralser%20Lab%20-%20Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/ExtendedView_otherAA_colony_timecourse/xar/experiments_and_runs.xar.exploded/Run141534/20220824_F_2022-08-26_16-01-27.sky.zip into the system

24 Sep 2022 15:25:57,358 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis%20Crick%20Institute%20Ralser%20Lab%20-%20Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/ExtendedView_otherAA_colony_timecourse/xar/experiments_and_runs.xar.exploded/Run141535/20220826_L_2022-08-26_16-07-34/20220826_L.skyd into the system

24 Sep 2022 15:25:57,359 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis%20Crick%20Institute%20Ralser%20Lab%20-%20Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/ExtendedView_otherAA_colony_timecourse/xar/experiments_and_runs.xar.exploded/Run141535/20220826_L_2022-08-26_16-07-34/20220826_L.skyd into the system

24 Sep 2022 15:25:57,359 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis%20Crick%20Institute%20Ralser%20Lab%20-%20Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/ExtendedView_otherAA_colony_timecourse/xar/experiments_and_runs.xar.exploded/Run141535/20220826_L_2022-08-26_16-07-34.sky.zip into the system

24 Sep 2022 15:25:57,360 INFO : Starting import from 20220826_L_2022-08-26_16-07-34.sky.zip

24 Sep 2022 15:25:57,362 INFO : Starting to import Skyline document from 20220826_L_2022-08-26_16-07-34.sky.zip

24 Sep 2022 15:25:57,364 INFO : Expanding 20220826_L.skyd

24 Sep 2022 15:25:57,395 INFO : Expanding 20220826_L.sky.view

24 Sep 2022 15:25:57,395 INFO : Expanding 20220826_L.sky

24 Sep 2022 15:25:57,408 INFO : 1% Done

24 Sep 2022 15:25:57,440 DEBUG: Starting to load chromatogram headers

24 Sep 2022 15:25:57,440 DEBUG: Done loading chromatogram headers

24 Sep 2022 15:25:57,653 INFO : Inserting peptides1

24 Sep 2022 15:25:57,688 INFO : 18% Done

24 Sep 2022 15:25:57,842 DEBUG: Total peptides inserted: 1

24 Sep 2022 15:25:57,842 INFO : Inserting peptides2

24 Sep 2022 15:25:57,880 INFO : 35% Done

24 Sep 2022 15:25:58,055 DEBUG: Total peptides inserted: 1

24 Sep 2022 15:25:58,055 INFO : Inserting peptides3

24 Sep 2022 15:25:58,082 INFO : 48% Done

24 Sep 2022 15:25:58,193 DEBUG: Total peptides inserted: 1

24 Sep 2022 15:25:58,194 INFO : Inserting peptides4

24 Sep 2022 15:25:58,226 INFO : 65% Done

24 Sep 2022 15:25:58,384 DEBUG: Total peptides inserted: 1

24 Sep 2022 15:25:58,384 INFO : Inserting peptides5

24 Sep 2022 15:25:58,421 INFO : 83% Done

24 Sep 2022 15:25:58,568 DEBUG: Total peptides inserted: 1

24 Sep 2022 15:25:58,568 INFO : Inserting peptides6

24 Sep 2022 15:25:58,594 INFO : 98% Done

24 Sep 2022 15:25:58,726 DEBUG: Total peptides inserted: 1

24 Sep 2022 15:25:58,728 INFO : Done parsing Skyline document.

24 Sep 2022 15:25:58,728 INFO : Creating and populating temp tables for Proportion values

24 Sep 2022 15:25:58,773 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

24 Sep 2022 15:25:58,785 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

24 Sep 2022 15:25:58,787 INFO : Cleaning up temp tables

24 Sep 2022 15:25:58,986 INFO : Completed import of Skyline document from 20220826_L_2022-08-26_16-07-34.sky.zip

24 Sep 2022 15:25:58,988 INFO : 100% Done

24 Sep 2022 15:25:58,992 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis%20Crick%20Institute%20Ralser%20Lab%20-%20Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/ExtendedView_otherAA_colony_timecourse/xar/experiments_and_runs.xar.exploded/Run141535/20220826_L_2022-08-26_16-07-34.sky.zip into the system

24 Sep 2022 15:25:59,005 INFO : Done importing xar

24 Sep 2022 15:25:59,006 INFO : Loading pages and webpart properties

24 Sep 2022 15:25:59,082 INFO : Done importing 4 page(s) with 7 webpart(s)

24 Sep 2022 15:25:59,083 INFO : Starting Sample Status Data import

24 Sep 2022 15:25:59,083 INFO : No sample types XAR file to process.

24 Sep 2022 15:25:59,083 INFO : Finished importing Sample Status Data

24 Sep 2022 15:25:59,088 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType

24 Sep 2022 15:25:59,089 INFO : A row containing [Description: 'null', Color: '800000', Name: 'Reagent Change'] values already exists. Skipping

24 Sep 2022 15:25:59,090 INFO : A row containing [Description: 'null', Color: 'FF0000', Name: 'Instrumentation Change'] values already exists. Skipping

24 Sep 2022 15:25:59,090 INFO : A row containing [Description: 'null', Color: '0000FF', Name: 'Technician Change'] values already exists. Skipping

24 Sep 2022 15:25:59,090 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType

24 Sep 2022 15:25:59,090 INFO : Done importing folder archive for ExtendedView_otherAA_colony_timecourse

24 Sep 2022 15:25:59,090 INFO : Done importing subfolders and container tabs

24 Sep 2022 15:25:59,090 INFO : Importing files metadata.

24 Sep 2022 15:25:59,090 DEBUG: [/Panorama Public/2022/Francis Crick Institute Ralser Lab - Kamrad_et_al_13Cproteomics_metabolic_heterogeneity]  Reading files metadata from /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis Crick Institute Ralser Lab - Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export

24 Sep 2022 15:25:59,091 DEBUG: [/Panorama Public/2022/Francis Crick Institute Ralser Lab - Kamrad_et_al_13Cproteomics_metabolic_heterogeneity/Dataset2_lysine_colony_timecourse_gluC]  Reading files metadata from /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis Crick Institute Ralser Lab - Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/Dataset2_lysine_colony_timecourse_gluC

24 Sep 2022 15:25:59,092 DEBUG: [/Panorama Public/2022/Francis Crick Institute Ralser Lab - Kamrad_et_al_13Cproteomics_metabolic_heterogeneity/ExtendedView_lysine_colony_timecourse_missedCleavage]  Reading files metadata from /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis Crick Institute Ralser Lab - Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/ExtendedView_lysine_colony_timecourse_missedCleavage

24 Sep 2022 15:25:59,092 DEBUG: [/Panorama Public/2022/Francis Crick Institute Ralser Lab - Kamrad_et_al_13Cproteomics_metabolic_heterogeneity/ExtendedView_lysine_liquid_timecourse]  Reading files metadata from /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis Crick Institute Ralser Lab - Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/ExtendedView_lysine_liquid_timecourse

24 Sep 2022 15:25:59,093 DEBUG: [/Panorama Public/2022/Francis Crick Institute Ralser Lab - Kamrad_et_al_13Cproteomics_metabolic_heterogeneity/ExtendedView_otherAA_colony_timecourse]  Reading files metadata from /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis Crick Institute Ralser Lab - Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/ExtendedView_otherAA_colony_timecourse

24 Sep 2022 15:25:59,093 INFO : 

24 Sep 2022 15:25:59,093 INFO : Experiment import completed successfully.

24 Sep 2022 15:25:59,093 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'

24 Sep 2022 15:25:59,120 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'

24 Sep 2022 15:25:59,120 INFO : 

24 Sep 2022 15:25:59,120 INFO : Checking for library folders.

24 Sep 2022 15:25:59,125 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'

24 Sep 2022 15:25:59,149 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'

24 Sep 2022 15:25:59,149 INFO : 

24 Sep 2022 15:25:59,149 INFO : Finishing up experiment copy.

24 Sep 2022 15:25:59,151 INFO : Adding runs imported in subfolders.

24 Sep 2022 15:25:59,164 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.

24 Sep 2022 15:25:59,164 INFO : Setting version on new experiment to 1

24 Sep 2022 15:25:59,164 INFO : Assigning a ProteomeXchange ID.

24 Sep 2022 15:26:01,282 INFO : Assigning a DOI.

24 Sep 2022 15:26:02,603 INFO : Assigned DOI: 10.6069/s9b3-zz35

24 Sep 2022 15:26:02,608 INFO : Updating access URL to point to the new copy of the data.

24 Sep 2022 15:26:02,611 INFO : Removing copy permissions given to Panorama Public

24 Sep 2022 15:26:02,650 INFO : Adding read permissions to all users that are folder admins in the source folder.

24 Sep 2022 15:26:02,658 INFO : Updating the 'Raw Data' tab configuration

24 Sep 2022 15:26:02,663 INFO : Updating dataFileUrls for run 20210602_KgluC_labelMod_permut_2022-08-24_12-17-54.sky.zip; targetedms run ID 145102

24 Sep 2022 15:26:02,663 INFO : Updating dataFileUrl...

24 Sep 2022 15:26:02,663 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis%20Crick%20Institute%20Ralser%20Lab%20-%20Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/Dataset2_lysine_colony_timecourse_gluC/xar/experiments_and_runs.xar.exploded/Run141453/20210602_KgluC_labelMod_permut_2022-08-24_12-17-54.sky.zip

24 Sep 2022 15:26:02,663 INFO : to: file:///data/labkey/files/Panorama%20Public/2022/Francis%20Crick%20Institute%20Ralser%20Lab%20-%20Kamrad_et_al_13Cproteomics_metabolic_heterogeneity/Dataset2_lysine_colony_timecourse_gluC/@files/20210602_KgluC_labelMod_permut_2022-08-24_12-17-54.sky.zip

24 Sep 2022 15:26:02,665 INFO : Updating dataFileUrl...

24 Sep 2022 15:26:02,665 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis%20Crick%20Institute%20Ralser%20Lab%20-%20Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/Dataset2_lysine_colony_timecourse_gluC/xar/experiments_and_runs.xar.exploded/Run141453/20210602_KgluC_labelMod_permut_2022-08-24_12-17-54/20210602_KgluC_labelMod_permut.skyd

24 Sep 2022 15:26:02,665 INFO : to: file:///data/labkey/files/Panorama%20Public/2022/Francis%20Crick%20Institute%20Ralser%20Lab%20-%20Kamrad_et_al_13Cproteomics_metabolic_heterogeneity/Dataset2_lysine_colony_timecourse_gluC/@files/20210602_KgluC_labelMod_permut_2022-08-24_12-17-54/20210602_KgluC_labelMod_permut.skyd

24 Sep 2022 15:26:02,668 INFO : Updating dataFileUrls for run 20220906_KgluC_3lysine_2022-09-21_10-33-32.sky.zip; targetedms run ID 145103

24 Sep 2022 15:26:02,668 INFO : Updating dataFileUrl...

24 Sep 2022 15:26:02,668 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis%20Crick%20Institute%20Ralser%20Lab%20-%20Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/Dataset2_lysine_colony_timecourse_gluC/xar/experiments_and_runs.xar.exploded/Run143040/20220906_KgluC_3lysine_2022-09-21_10-33-32/20220906_KgluC_3lysine.skyd

24 Sep 2022 15:26:02,668 INFO : to: file:///data/labkey/files/Panorama%20Public/2022/Francis%20Crick%20Institute%20Ralser%20Lab%20-%20Kamrad_et_al_13Cproteomics_metabolic_heterogeneity/Dataset2_lysine_colony_timecourse_gluC/@files/20220906_KgluC_3lysine_2022-09-21_10-33-32/20220906_KgluC_3lysine.skyd

24 Sep 2022 15:26:02,670 INFO : Updating dataFileUrl...

24 Sep 2022 15:26:02,670 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis%20Crick%20Institute%20Ralser%20Lab%20-%20Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/Dataset2_lysine_colony_timecourse_gluC/xar/experiments_and_runs.xar.exploded/Run143040/20220906_KgluC_3lysine_2022-09-21_10-33-32.sky.zip

24 Sep 2022 15:26:02,670 INFO : to: file:///data/labkey/files/Panorama%20Public/2022/Francis%20Crick%20Institute%20Ralser%20Lab%20-%20Kamrad_et_al_13Cproteomics_metabolic_heterogeneity/Dataset2_lysine_colony_timecourse_gluC/@files/20220906_KgluC_3lysine_2022-09-21_10-33-32.sky.zip

24 Sep 2022 15:26:02,672 INFO : Updating dataFileUrls for run 20210810_K_missedCleavage_2022-08-24_15-23-40.sky.zip; targetedms run ID 145104

24 Sep 2022 15:26:02,672 INFO : Updating dataFileUrl...

24 Sep 2022 15:26:02,672 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Francis%20Crick%20Institute%20Ralser%20Lab%20-%20Kamrad_et_al_13Cproteomics_metabolic_heterogeneity_114cd58f-1e85-103b-adec-fea6ddf58494/_temp__2022-09-24_15-21-11/export/subfolders/ExtendedView_lysine_colony_timecourse_missedCleavage/xar/experiments_and_runs.xar.exploded/Run141463/20210810_K_missedCleavage_2022-08-24_15-23-40/20210810_K_missedCleavage.skyd

24 Sep 2022 15:26:02,672 INFO : to: file:///data/labkey/files/Panorama%20Public/2022/Francis%20Crick%20Institute%20Ralser%20Lab%20-%20Kamrad_et_al_13Cproteomics_metabolic_heterogeneity/ExtendedView_lysine_colony_timecourse_missedCleavage/@files/20210810_K_missedCleavage_2022-08-24_15-23-40/20210810_K_missedCleavage.skyd

24 Sep 2022 15:26:02,673 INFO : Updating dataFileUrl...

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24 Sep 2022 15:26:02,676 INFO : Updating dataFileUrls for run 20210923_K_missedCleavage_2022-08-24_12-59-30.sky.zip; targetedms run ID 145105

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24 Sep 2022 15:26:02,680 INFO : Updating dataFileUrls for run 20220825_N_2022-08-26_12-34-34.sky.zip; targetedms run ID 145106

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24 Sep 2022 15:26:02,684 INFO : Updating dataFileUrls for run 20220824_F_2022-08-26_16-01-27.sky.zip; targetedms run ID 145107

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24 Sep 2022 15:26:02,693 INFO : Creating a reviewer account.

24 Sep 2022 15:26:02,930 INFO : Created reviewer with email: User panorama+reviewer146@proteinms.net

24 Sep 2022 15:26:02,940 INFO : Hiding the Data Pipeline tab.

24 Sep 2022 15:26:02,961 INFO : Updating Submission. Setting copiedExperimentId to 1508

24 Sep 2022 15:26:03,041 INFO : Emailing submitter.

24 Sep 2022 15:26:03,160 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'