13 Apr 2021 15:21:29,576 INFO : Copying experiment "Quantitation of frataxin-related proteins in I151F mice" from folder /University of Lleida - Biochemistry of Oxidative Stress/Mouse/I151F characterization to /Panorama Public/2021/University of Lleida Biochemistry of Oxidative Stress - I151F characterization
13 Apr 2021 15:21:29,577 INFO : =======================================
13 Apr 2021 15:24:15,137 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
13 Apr 2021 15:24:15,137 INFO : 
13 Apr 2021 15:24:15,137 INFO : Exporting experiment.
13 Apr 2021 15:27:36,313 INFO : 
13 Apr 2021 15:27:36,313 INFO : Experiment export completed successfully.
13 Apr 2021 15:27:36,313 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
13 Apr 2021 15:27:36,354 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
13 Apr 2021 15:27:36,355 INFO : 
13 Apr 2021 15:27:36,355 INFO : Importing experiment.
13 Apr 2021 15:27:36,385 INFO : Loading folder properties (folder type, settings and active modules)
13 Apr 2021 15:27:36,499 INFO : Done importing folder properties (folder type, settings and active modules)
13 Apr 2021 15:27:36,504 INFO : Loading grid views
13 Apr 2021 15:27:36,515 INFO : 1 custom view imported
13 Apr 2021 15:27:36,515 INFO : Done importing grid views
13 Apr 2021 15:27:36,519 INFO : Loading etl definitions
13 Apr 2021 15:27:36,524 INFO : Loading wikis
13 Apr 2021 15:27:36,527 INFO : 0 wikis imported
13 Apr 2021 15:27:36,527 INFO : Done importing wikis
13 Apr 2021 15:27:36,528 INFO : Starting to copy files
13 Apr 2021 15:28:22,959 INFO : Copied 18 files
13 Apr 2021 15:28:22,959 INFO : Ensuring exp.data rows exist for imported files
13 Apr 2021 15:28:23,164 INFO : Starting Sample Type and Data Class import
13 Apr 2021 15:28:23,165 INFO : No types XAR file to process.
13 Apr 2021 15:28:23,165 INFO : Finished importing Sample Types and Data Classes
13 Apr 2021 15:28:23,167 INFO : Loading xar
13 Apr 2021 15:28:28,125 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8405:TargetedMS.ImportSkyZip'
13 Apr 2021 15:28:28,129 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8405:TargetedMS.ImportSkyZip.Core'
13 Apr 2021 15:28:28,132 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8405:TargetedMS.ImportSkyZip.Output'
13 Apr 2021 15:28:28,132 DEBUG: Protocol import complete
13 Apr 2021 15:28:28,135 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-8405:Quantitation+of+frataxin-related+proteins+in+I151F+mice'
13 Apr 2021 15:28:28,135 DEBUG: Experiment/Run group import complete
13 Apr 2021 15:28:28,155 DEBUG: Protocol action set import complete
13 Apr 2021 15:28:28,170 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8405:TargetedMS.ImportSkyZip'
13 Apr 2021 15:28:28,181 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8405:8a1bfbe0-58d5-1039-9674-3013bb9b91fd'
13 Apr 2021 15:28:28,187 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8405:9f3cdf77-58c8-1039-9674-3013bb9b91fd'
13 Apr 2021 15:28:28,187 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8405:TargetedMS.ImportSkyZip.Core'
13 Apr 2021 15:28:28,190 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8405:TargetedMS.ImportSkyZip.Output'
13 Apr 2021 15:28:28,192 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8405:8a1bfc9c-58d5-1039-9674-3013bb9b91fd'
13 Apr 2021 15:28:28,199 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8405:TargetedMS.ImportSkyZip'
13 Apr 2021 15:28:28,205 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8405:3dc9674e-5a5a-1039-9674-3013bb9b91fd'
13 Apr 2021 15:28:28,209 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8405:3dc966e3-5a5a-1039-9674-3013bb9b91fd'
13 Apr 2021 15:28:28,209 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8405:TargetedMS.ImportSkyZip.Core'
13 Apr 2021 15:28:28,212 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8405:TargetedMS.ImportSkyZip.Output'
13 Apr 2021 15:28:28,212 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8405:3dc9687f-5a5a-1039-9674-3013bb9b91fd'
13 Apr 2021 15:28:28,220 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8405:TargetedMS.ImportSkyZip'
13 Apr 2021 15:28:28,221 WARN : Unrecognized CpasType 'urn:lsid:uw.edu:.Folder-8264:' loaded for Data object.
13 Apr 2021 15:28:28,226 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8405:16669963-58b9-1039-9674-3013bb9b91fd'
13 Apr 2021 15:28:28,226 WARN : Unrecognized CpasType 'urn:lsid:uw.edu:.Folder-8264:' loaded for Data object.
13 Apr 2021 15:28:28,230 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8405:166698bb-58b9-1039-9674-3013bb9b91fd'
13 Apr 2021 15:28:28,230 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8405:TargetedMS.ImportSkyZip.Core'
13 Apr 2021 15:28:28,231 WARN : Unrecognized CpasType 'urn:lsid:uw.edu:.Folder-8264:' loaded for Data object.
13 Apr 2021 15:28:28,232 WARN : Unrecognized CpasType 'urn:lsid:uw.edu:.Folder-8264:' loaded for Data object.
13 Apr 2021 15:28:28,233 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8405:TargetedMS.ImportSkyZip.Output'
13 Apr 2021 15:28:28,233 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8405:16669b0d-58b9-1039-9674-3013bb9b91fd'
13 Apr 2021 15:28:28,234 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/University%20of%20Lleida%20Biochemistry%20of%20Oxidative%20Stress%20-%20I151F%20characterization_b626da87-7ed2-1039-a447-fea6ddf5a122/_temp__2021-04-13_15-21-28/export/xar/experiments_and_runs.xar.exploded/Run102340/MRM%20Cerebelum_2021-02-24_13-23-28/MRM%20Cerebelum.skyd into the system
13 Apr 2021 15:28:28,235 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/University%20of%20Lleida%20Biochemistry%20of%20Oxidative%20Stress%20-%20I151F%20characterization_b626da87-7ed2-1039-a447-fea6ddf5a122/_temp__2021-04-13_15-21-28/export/xar/experiments_and_runs.xar.exploded/Run102340/MRM%20Cerebelum_2021-02-24_13-23-28/MRM%20Cerebelum.skyd into the system
13 Apr 2021 15:28:28,235 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/University%20of%20Lleida%20Biochemistry%20of%20Oxidative%20Stress%20-%20I151F%20characterization_b626da87-7ed2-1039-a447-fea6ddf5a122/_temp__2021-04-13_15-21-28/export/xar/experiments_and_runs.xar.exploded/Run102340/MRM%20Cerebelum_2021-02-24_13-23-28.sky.zip into the system
13 Apr 2021 15:28:28,236 INFO : Starting import from MRM Cerebelum_2021-02-24_13-23-28.sky.zip
13 Apr 2021 15:28:28,240 INFO : Starting to import Skyline document from MRM Cerebelum_2021-02-24_13-23-28.sky.zip
13 Apr 2021 15:28:28,242 INFO : Expanding Mouse.protdb
13 Apr 2021 15:28:32,090 INFO : Expanding MRM Cerebelum.skyd
13 Apr 2021 15:28:32,142 INFO : Expanding MRM Cerebelum.sky.view
13 Apr 2021 15:28:32,142 INFO : Expanding MRM Cerebelum.sky
13 Apr 2021 15:28:32,173 INFO : 1% Done
13 Apr 2021 15:28:32,290 DEBUG: Starting to load chromatogram headers
13 Apr 2021 15:28:32,299 DEBUG: Done loading chromatogram headers
13 Apr 2021 15:28:32,375 INFO : Inserting sp|Q9CZU6|CISY_MOUSE
13 Apr 2021 15:28:32,386 INFO : 3% Done
13 Apr 2021 15:28:32,486 INFO : 5% Done
13 Apr 2021 15:28:32,561 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:32,561 INFO : Inserting sp|Q99KI0|ACON_MOUSE
13 Apr 2021 15:28:32,568 INFO : 8% Done
13 Apr 2021 15:28:32,647 INFO : 10% Done
13 Apr 2021 15:28:32,707 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:32,708 INFO : Inserting sp|Q03265|ATPA_MOUSE
13 Apr 2021 15:28:32,713 INFO : 12% Done
13 Apr 2021 15:28:32,793 INFO : 14% Done
13 Apr 2021 15:28:32,888 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:32,888 INFO : Inserting sp|P56480|ATPB_MOUSE
13 Apr 2021 15:28:32,896 INFO : 17% Done
13 Apr 2021 15:28:32,997 INFO : 19% Done
13 Apr 2021 15:28:33,093 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:33,093 INFO : Inserting sp|Q9CQA3|SDHB_MOUSE
13 Apr 2021 15:28:33,105 INFO : 21% Done
13 Apr 2021 15:28:33,196 INFO : 23% Done
13 Apr 2021 15:28:33,272 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:33,273 INFO : 24% Done
13 Apr 2021 15:28:33,274 INFO : Inserting sp|P17183|ENOG_MOUSE
13 Apr 2021 15:28:33,279 INFO : 25% Done
13 Apr 2021 15:28:33,356 INFO : 27% Done
13 Apr 2021 15:28:33,427 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:33,427 INFO : Inserting sp|P17182|ENOA_MOUSE
13 Apr 2021 15:28:33,434 INFO : 29% Done
13 Apr 2021 15:28:33,516 INFO : 32% Done
13 Apr 2021 15:28:33,593 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:33,593 INFO : Inserting sp|P62897|CYC_MOUSE
13 Apr 2021 15:28:33,600 INFO : 34% Done
13 Apr 2021 15:28:33,678 INFO : 36% Done
13 Apr 2021 15:28:33,768 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:33,769 INFO : Inserting sp|Q9D0M3|CY1_MOUSE
13 Apr 2021 15:28:33,779 INFO : 39% Done
13 Apr 2021 15:28:33,868 INFO : 41% Done
13 Apr 2021 15:28:33,968 INFO : 43% Done
13 Apr 2021 15:28:34,066 DEBUG: Total peptides inserted: 3
13 Apr 2021 15:28:34,067 INFO : Inserting sp|P00405|COX2_MOUSE
13 Apr 2021 15:28:34,077 INFO : 46% Done
13 Apr 2021 15:28:34,163 DEBUG: Total peptides inserted: 1
13 Apr 2021 15:28:34,164 INFO : Inserting sp|Q9DB77|QCR2_MOUSE
13 Apr 2021 15:28:34,171 INFO : 48% Done
13 Apr 2021 15:28:34,256 INFO : 50% Done
13 Apr 2021 15:28:34,389 INFO : 53% Done
13 Apr 2021 15:28:34,501 DEBUG: Total peptides inserted: 3
13 Apr 2021 15:28:34,502 INFO : Inserting sp|Q8K2B3|SDHA_MOUSE
13 Apr 2021 15:28:34,509 INFO : 55% Done
13 Apr 2021 15:28:34,609 DEBUG: Total peptides inserted: 1
13 Apr 2021 15:28:34,609 INFO : Inserting sp|P08228|SODC_MOUSE
13 Apr 2021 15:28:34,620 INFO : 57% Done
13 Apr 2021 15:28:34,713 INFO : 60% Done
13 Apr 2021 15:28:34,785 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:34,785 INFO : Inserting sp|P09671|SODM_MOUSE
13 Apr 2021 15:28:34,793 INFO : 62% Done
13 Apr 2021 15:28:34,872 INFO : 64% Done
13 Apr 2021 15:28:34,986 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:34,986 INFO : Inserting sp|O08749|DLDH_MOUSE
13 Apr 2021 15:28:34,997 INFO : 67% Done
13 Apr 2021 15:28:35,093 INFO : 69% Done
13 Apr 2021 15:28:35,182 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:35,183 INFO : Inserting sp|Q8BMF4|ODP2_MOUSE
13 Apr 2021 15:28:35,190 INFO : 71% Done
13 Apr 2021 15:28:35,267 INFO : 74% Done
13 Apr 2021 15:28:35,337 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:35,337 INFO : Inserting sp|P35486|ODPA_MOUSE
13 Apr 2021 15:28:35,344 INFO : 75% Done
13 Apr 2021 15:28:35,423 INFO : 77% Done
13 Apr 2021 15:28:35,498 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:35,498 INFO : Inserting sp|P52480|KPYM_MOUSE
13 Apr 2021 15:28:35,505 INFO : 79% Done
13 Apr 2021 15:28:35,632 INFO : 82% Done
13 Apr 2021 15:28:35,712 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:35,712 INFO : Inserting sp|P16858|G3P_MOUSE
13 Apr 2021 15:28:35,719 INFO : 84% Done
13 Apr 2021 15:28:35,798 INFO : 86% Done
13 Apr 2021 15:28:35,882 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:35,882 INFO : Inserting Actins
13 Apr 2021 15:28:35,888 INFO : 89% Done
13 Apr 2021 15:28:35,975 INFO : 91% Done
13 Apr 2021 15:28:36,050 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:36,050 INFO : Inserting sp|P38647|GRP75_MOUSE
13 Apr 2021 15:28:36,057 INFO : 93% Done
13 Apr 2021 15:28:36,140 INFO : 96% Done
13 Apr 2021 15:28:36,213 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:36,213 INFO : Inserting sp|P63038|CH60_MOUSE
13 Apr 2021 15:28:36,219 INFO : 98% Done
13 Apr 2021 15:28:36,289 DEBUG: Total peptides inserted: 1
13 Apr 2021 15:28:36,290 INFO : Done parsing Skyline document.
13 Apr 2021 15:28:36,291 INFO : Creating and populating temp tables for Proportion values
13 Apr 2021 15:28:36,321 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
13 Apr 2021 15:28:36,464 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
13 Apr 2021 15:28:36,514 INFO : Cleaning up temp tables
13 Apr 2021 15:28:36,917 INFO : Completed import of Skyline document from MRM Cerebelum_2021-02-24_13-23-28.sky.zip
13 Apr 2021 15:28:36,923 INFO : 100% Done
13 Apr 2021 15:28:36,932 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/University%20of%20Lleida%20Biochemistry%20of%20Oxidative%20Stress%20-%20I151F%20characterization_b626da87-7ed2-1039-a447-fea6ddf5a122/_temp__2021-04-13_15-21-28/export/xar/experiments_and_runs.xar.exploded/Run102340/MRM%20Cerebelum_2021-02-24_13-23-28.sky.zip into the system
13 Apr 2021 15:28:36,932 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/University%20of%20Lleida%20Biochemistry%20of%20Oxidative%20Stress%20-%20I151F%20characterization_b626da87-7ed2-1039-a447-fea6ddf5a122/_temp__2021-04-13_15-21-28/export/xar/experiments_and_runs.xar.exploded/Run102521/MRM%20Heart_2021-02-26_13-08-25/MRM%20Heart.skyd into the system
13 Apr 2021 15:28:36,933 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/University%20of%20Lleida%20Biochemistry%20of%20Oxidative%20Stress%20-%20I151F%20characterization_b626da87-7ed2-1039-a447-fea6ddf5a122/_temp__2021-04-13_15-21-28/export/xar/experiments_and_runs.xar.exploded/Run102521/MRM%20Heart_2021-02-26_13-08-25/MRM%20Heart.skyd into the system
13 Apr 2021 15:28:36,933 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/University%20of%20Lleida%20Biochemistry%20of%20Oxidative%20Stress%20-%20I151F%20characterization_b626da87-7ed2-1039-a447-fea6ddf5a122/_temp__2021-04-13_15-21-28/export/xar/experiments_and_runs.xar.exploded/Run102521/MRM%20Heart_2021-02-26_13-08-25.sky.zip into the system
13 Apr 2021 15:28:36,935 INFO : Starting import from MRM Heart_2021-02-26_13-08-25.sky.zip
13 Apr 2021 15:28:36,938 INFO : Starting to import Skyline document from MRM Heart_2021-02-26_13-08-25.sky.zip
13 Apr 2021 15:28:36,943 INFO : Expanding Mouse.protdb
13 Apr 2021 15:28:41,001 INFO : Expanding MRM Heart.skyd
13 Apr 2021 15:28:41,054 INFO : Expanding MRM Heart.sky.view
13 Apr 2021 15:28:41,055 INFO : Expanding MRM Heart.sky
13 Apr 2021 15:28:41,079 INFO : 1% Done
13 Apr 2021 15:28:41,127 DEBUG: Starting to load chromatogram headers
13 Apr 2021 15:28:41,132 DEBUG: Done loading chromatogram headers
13 Apr 2021 15:28:41,264 INFO : Inserting sp|Q9CZU6|CISY_MOUSE
13 Apr 2021 15:28:41,276 INFO : 3% Done
13 Apr 2021 15:28:41,358 INFO : 6% Done
13 Apr 2021 15:28:41,420 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:41,420 INFO : Inserting sp|Q99KI0|ACON_MOUSE
13 Apr 2021 15:28:41,426 INFO : 8% Done
13 Apr 2021 15:28:41,492 INFO : 10% Done
13 Apr 2021 15:28:41,554 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:41,555 INFO : Inserting sp|Q03265|ATPA_MOUSE
13 Apr 2021 15:28:41,565 INFO : 12% Done
13 Apr 2021 15:28:41,637 INFO : 14% Done
13 Apr 2021 15:28:41,697 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:41,697 INFO : Inserting sp|P56480|ATPB_MOUSE
13 Apr 2021 15:28:41,704 INFO : 17% Done
13 Apr 2021 15:28:41,797 INFO : 19% Done
13 Apr 2021 15:28:41,873 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:41,873 INFO : Inserting sp|Q9CQA3|SDHB_MOUSE
13 Apr 2021 15:28:41,880 INFO : 21% Done
13 Apr 2021 15:28:42,005 INFO : 24% Done
13 Apr 2021 15:28:42,084 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:42,084 INFO : Inserting sp|P21550|ENOB_MOUSE
13 Apr 2021 15:28:42,091 INFO : 25% Done
13 Apr 2021 15:28:42,158 DEBUG: Total peptides inserted: 1
13 Apr 2021 15:28:42,158 INFO : Inserting sp|P17182|ENOA_MOUSE
13 Apr 2021 15:28:42,164 INFO : 27% Done
13 Apr 2021 15:28:42,240 INFO : 30% Done
13 Apr 2021 15:28:42,316 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:42,316 INFO : Inserting sp|P62897|CYC_MOUSE
13 Apr 2021 15:28:42,328 INFO : 32% Done
13 Apr 2021 15:28:42,411 INFO : 34% Done
13 Apr 2021 15:28:42,478 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:42,478 INFO : Inserting sp|Q9D0M3|CY1_MOUSE
13 Apr 2021 15:28:42,486 INFO : 37% Done
13 Apr 2021 15:28:42,556 INFO : 39% Done
13 Apr 2021 15:28:42,636 INFO : 41% Done
13 Apr 2021 15:28:42,722 DEBUG: Total peptides inserted: 3
13 Apr 2021 15:28:42,722 INFO : Inserting sp|P00405|COX2_MOUSE
13 Apr 2021 15:28:42,732 INFO : 44% Done
13 Apr 2021 15:28:42,848 INFO : 46% Done
13 Apr 2021 15:28:42,937 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:42,938 INFO : Inserting sp|Q9DB77|QCR2_MOUSE
13 Apr 2021 15:28:42,944 INFO : 48% Done
13 Apr 2021 15:28:43,020 INFO : 50% Done
13 Apr 2021 15:28:43,087 INFO : 53% Done
13 Apr 2021 15:28:43,148 DEBUG: Total peptides inserted: 3
13 Apr 2021 15:28:43,148 INFO : Inserting sp|Q8K2B3|SDHA_MOUSE
13 Apr 2021 15:28:43,154 INFO : 55% Done
13 Apr 2021 15:28:43,241 DEBUG: Total peptides inserted: 1
13 Apr 2021 15:28:43,241 INFO : Inserting sp|P08228|SODC_MOUSE
13 Apr 2021 15:28:43,250 INFO : 57% Done
13 Apr 2021 15:28:43,330 INFO : 60% Done
13 Apr 2021 15:28:43,396 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:43,396 INFO : Inserting sp|P09671|SODM_MOUSE
13 Apr 2021 15:28:43,402 INFO : 62% Done
13 Apr 2021 15:28:43,473 INFO : 64% Done
13 Apr 2021 15:28:43,537 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:43,537 INFO : Inserting sp|O08749|DLDH_MOUSE
13 Apr 2021 15:28:43,544 INFO : 67% Done
13 Apr 2021 15:28:43,614 INFO : 69% Done
13 Apr 2021 15:28:43,680 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:43,680 INFO : Inserting sp|Q8BMF4|ODP2_MOUSE
13 Apr 2021 15:28:43,687 INFO : 71% Done
13 Apr 2021 15:28:43,758 INFO : 74% Done
13 Apr 2021 15:28:43,840 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:43,840 INFO : Inserting sp|P35486|ODPA_MOUSE
13 Apr 2021 15:28:43,849 INFO : 75% Done
13 Apr 2021 15:28:43,943 INFO : 77% Done
13 Apr 2021 15:28:44,023 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:44,023 INFO : Inserting sp|P52480|KPYM_MOUSE
13 Apr 2021 15:28:44,031 INFO : 79% Done
13 Apr 2021 15:28:44,107 INFO : 82% Done
13 Apr 2021 15:28:44,190 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:44,190 INFO : Inserting sp|P16858|G3P_MOUSE
13 Apr 2021 15:28:44,197 INFO : 84% Done
13 Apr 2021 15:28:44,304 INFO : 86% Done
13 Apr 2021 15:28:44,379 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:44,380 INFO : Inserting Actins
13 Apr 2021 15:28:44,386 INFO : 89% Done
13 Apr 2021 15:28:44,469 INFO : 91% Done
13 Apr 2021 15:28:44,557 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:44,557 INFO : Inserting sp|P38647|GRP75_MOUSE
13 Apr 2021 15:28:44,566 INFO : 93% Done
13 Apr 2021 15:28:44,646 INFO : 96% Done
13 Apr 2021 15:28:44,730 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:44,730 INFO : Inserting sp|P63038|CH60_MOUSE
13 Apr 2021 15:28:44,740 INFO : 98% Done
13 Apr 2021 15:28:44,826 DEBUG: Total peptides inserted: 1
13 Apr 2021 15:28:44,826 INFO : Done parsing Skyline document.
13 Apr 2021 15:28:44,828 INFO : Creating and populating temp tables for Proportion values
13 Apr 2021 15:28:44,858 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
13 Apr 2021 15:28:45,000 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
13 Apr 2021 15:28:45,050 INFO : Cleaning up temp tables
13 Apr 2021 15:28:45,384 INFO : Completed import of Skyline document from MRM Heart_2021-02-26_13-08-25.sky.zip
13 Apr 2021 15:28:45,388 INFO : 100% Done
13 Apr 2021 15:28:45,396 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/University%20of%20Lleida%20Biochemistry%20of%20Oxidative%20Stress%20-%20I151F%20characterization_b626da87-7ed2-1039-a447-fea6ddf5a122/_temp__2021-04-13_15-21-28/export/xar/experiments_and_runs.xar.exploded/Run102521/MRM%20Heart_2021-02-26_13-08-25.sky.zip into the system
13 Apr 2021 15:28:45,396 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/University%20of%20Lleida%20Biochemistry%20of%20Oxidative%20Stress%20-%20I151F%20characterization_b626da87-7ed2-1039-a447-fea6ddf5a122/_temp__2021-04-13_15-21-28/export/xar/experiments_and_runs.xar.exploded/Run102531/MRM%20Brain.skyd into the system
13 Apr 2021 15:28:45,397 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/University%20of%20Lleida%20Biochemistry%20of%20Oxidative%20Stress%20-%20I151F%20characterization_b626da87-7ed2-1039-a447-fea6ddf5a122/_temp__2021-04-13_15-21-28/export/xar/experiments_and_runs.xar.exploded/Run102531/MRM%20Brain.skyd into the system
13 Apr 2021 15:28:45,397 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/University%20of%20Lleida%20Biochemistry%20of%20Oxidative%20Stress%20-%20I151F%20characterization_b626da87-7ed2-1039-a447-fea6ddf5a122/_temp__2021-04-13_15-21-28/export/xar/experiments_and_runs.xar.exploded/Run102531/MRM%20Brain_2021-02-24_11-23-27.sky.zip into the system
13 Apr 2021 15:28:45,399 INFO : Starting import from MRM Brain_2021-02-24_11-23-27.sky.zip
13 Apr 2021 15:28:45,402 INFO : Starting to import Skyline document from MRM Brain_2021-02-24_11-23-27.sky.zip
13 Apr 2021 15:28:45,402 INFO : Expanding Mouse.protdb
13 Apr 2021 15:28:49,440 INFO : Expanding MRM Brain.skyd
13 Apr 2021 15:28:49,500 INFO : Expanding MRM Brain.sky.view
13 Apr 2021 15:28:49,500 INFO : Expanding MRM Brain.sky
13 Apr 2021 15:28:49,525 INFO : 1% Done
13 Apr 2021 15:28:49,579 DEBUG: Starting to load chromatogram headers
13 Apr 2021 15:28:49,585 DEBUG: Done loading chromatogram headers
13 Apr 2021 15:28:49,692 INFO : Inserting sp|Q9CZU6|CISY_MOUSE
13 Apr 2021 15:28:49,699 INFO : 3% Done
13 Apr 2021 15:28:49,791 INFO : 5% Done
13 Apr 2021 15:28:49,862 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:49,862 INFO : Inserting sp|Q99KI0|ACON_MOUSE
13 Apr 2021 15:28:49,869 INFO : 7% Done
13 Apr 2021 15:28:49,941 INFO : 9% Done
13 Apr 2021 15:28:50,000 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:50,000 INFO : Inserting sp|Q03265|ATPA_MOUSE
13 Apr 2021 15:28:50,005 INFO : 11% Done
13 Apr 2021 15:28:50,080 INFO : 14% Done
13 Apr 2021 15:28:50,151 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:50,152 INFO : Inserting sp|P56480|ATPB_MOUSE
13 Apr 2021 15:28:50,157 INFO : 16% Done
13 Apr 2021 15:28:50,258 INFO : 18% Done
13 Apr 2021 15:28:50,346 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:50,346 INFO : Inserting sp|Q9CQA3|SDHB_MOUSE
13 Apr 2021 15:28:50,352 INFO : 20% Done
13 Apr 2021 15:28:50,438 INFO : 22% Done
13 Apr 2021 15:28:50,509 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:50,511 INFO : 23% Done
13 Apr 2021 15:28:50,511 INFO : Inserting sp|P17183|ENOG_MOUSE
13 Apr 2021 15:28:50,516 INFO : 25% Done
13 Apr 2021 15:28:50,591 INFO : 26% Done
13 Apr 2021 15:28:50,662 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:50,662 INFO : Inserting sp|P17182|ENOA_MOUSE
13 Apr 2021 15:28:50,667 INFO : 28% Done
13 Apr 2021 15:28:50,749 INFO : 30% Done
13 Apr 2021 15:28:50,819 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:50,819 INFO : Inserting sp|P62897|CYC_MOUSE
13 Apr 2021 15:28:50,824 INFO : 33% Done
13 Apr 2021 15:28:50,898 INFO : 35% Done
13 Apr 2021 15:28:50,968 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:50,968 INFO : Inserting sp|Q9D0M3|CY1_MOUSE
13 Apr 2021 15:28:50,974 INFO : 37% Done
13 Apr 2021 15:28:51,048 INFO : 39% Done
13 Apr 2021 15:28:51,123 INFO : 41% Done
13 Apr 2021 15:28:51,220 DEBUG: Total peptides inserted: 3
13 Apr 2021 15:28:51,220 INFO : Inserting sp|P00405|COX2_MOUSE
13 Apr 2021 15:28:51,230 INFO : 44% Done
13 Apr 2021 15:28:51,315 INFO : 46% Done
13 Apr 2021 15:28:51,401 INFO : 48% Done
13 Apr 2021 15:28:51,514 DEBUG: Total peptides inserted: 3
13 Apr 2021 15:28:51,514 INFO : Inserting sp|Q9DB77|QCR2_MOUSE
13 Apr 2021 15:28:51,520 INFO : 50% Done
13 Apr 2021 15:28:51,607 INFO : 52% Done
13 Apr 2021 15:28:51,686 INFO : 55% Done
13 Apr 2021 15:28:51,759 DEBUG: Total peptides inserted: 3
13 Apr 2021 15:28:51,759 INFO : Inserting sp|Q8K2B3|SDHA_MOUSE
13 Apr 2021 15:28:51,766 INFO : 57% Done
13 Apr 2021 15:28:51,838 DEBUG: Total peptides inserted: 1
13 Apr 2021 15:28:51,838 INFO : Inserting sp|P08228|SODC_MOUSE
13 Apr 2021 15:28:51,845 INFO : 59% Done
13 Apr 2021 15:28:51,925 INFO : 61% Done
13 Apr 2021 15:28:52,001 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:52,001 INFO : Inserting sp|P09671|SODM_MOUSE
13 Apr 2021 15:28:52,008 INFO : 64% Done
13 Apr 2021 15:28:52,093 INFO : 66% Done
13 Apr 2021 15:28:52,169 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:52,170 INFO : Inserting sp|O08749|DLDH_MOUSE
13 Apr 2021 15:28:52,177 INFO : 68% Done
13 Apr 2021 15:28:52,260 INFO : 70% Done
13 Apr 2021 15:28:52,333 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:52,333 INFO : Inserting sp|Q8BMF4|ODP2_MOUSE
13 Apr 2021 15:28:52,339 INFO : 72% Done
13 Apr 2021 15:28:52,414 INFO : 74% Done
13 Apr 2021 15:28:52,488 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:52,488 INFO : Inserting sp|P35486|ODPA_MOUSE
13 Apr 2021 15:28:52,495 INFO : 76% Done
13 Apr 2021 15:28:52,573 INFO : 78% Done
13 Apr 2021 15:28:52,643 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:52,643 INFO : Inserting sp|P52480|KPYM_MOUSE
13 Apr 2021 15:28:52,650 INFO : 80% Done
13 Apr 2021 15:28:52,727 INFO : 83% Done
13 Apr 2021 15:28:52,800 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:52,800 INFO : Inserting sp|P16858|G3P_MOUSE
13 Apr 2021 15:28:52,807 INFO : 85% Done
13 Apr 2021 15:28:52,886 INFO : 87% Done
13 Apr 2021 15:28:52,959 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:52,959 INFO : Inserting Actins
13 Apr 2021 15:28:52,966 INFO : 89% Done
13 Apr 2021 15:28:53,046 INFO : 91% Done
13 Apr 2021 15:28:53,121 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:53,121 INFO : Inserting sp|P38647|GRP75_MOUSE
13 Apr 2021 15:28:53,128 INFO : 94% Done
13 Apr 2021 15:28:53,205 INFO : 96% Done
13 Apr 2021 15:28:53,275 DEBUG: Total peptides inserted: 2
13 Apr 2021 15:28:53,275 INFO : Inserting sp|P63038|CH60_MOUSE
13 Apr 2021 15:28:53,281 INFO : 98% Done
13 Apr 2021 15:28:53,353 DEBUG: Total peptides inserted: 1
13 Apr 2021 15:28:53,354 INFO : Done parsing Skyline document.
13 Apr 2021 15:28:53,354 INFO : Creating and populating temp tables for Proportion values
13 Apr 2021 15:28:53,387 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
13 Apr 2021 15:28:53,552 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
13 Apr 2021 15:28:53,610 INFO : Cleaning up temp tables
13 Apr 2021 15:28:53,970 INFO : Completed import of Skyline document from MRM Brain_2021-02-24_11-23-27.sky.zip
13 Apr 2021 15:28:53,974 INFO : 100% Done
13 Apr 2021 15:28:53,981 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/University%20of%20Lleida%20Biochemistry%20of%20Oxidative%20Stress%20-%20I151F%20characterization_b626da87-7ed2-1039-a447-fea6ddf5a122/_temp__2021-04-13_15-21-28/export/xar/experiments_and_runs.xar.exploded/Run102531/MRM%20Brain_2021-02-24_11-23-27.sky.zip into the system
13 Apr 2021 15:28:53,998 INFO : Done importing xar
13 Apr 2021 15:28:54,001 INFO : Loading pages and webpart properties
13 Apr 2021 15:28:54,091 INFO : Done importing pages and webpart properties
13 Apr 2021 15:28:54,091 INFO : 
13 Apr 2021 15:28:54,091 INFO : Experiment import completed successfully.
13 Apr 2021 15:28:54,092 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
13 Apr 2021 15:28:54,145 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
13 Apr 2021 15:28:54,145 INFO : 
13 Apr 2021 15:28:54,145 INFO : Finishing up experiment copy.
13 Apr 2021 15:28:54,146 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
13 Apr 2021 15:28:54,152 INFO : Updating access URL to point to the new copy of the data.
13 Apr 2021 15:28:54,157 INFO : Setting the 'copied' timestamp and journalExperimentId on the JournalExperiment table.
13 Apr 2021 15:28:54,159 INFO : Removing copy permissions given to journal.
13 Apr 2021 15:28:54,160 INFO : Adding read permissions to all users that are folder admins in the source container.
13 Apr 2021 15:28:54,171 INFO : Setting the TargetedMS folder type to 'Experimental Data'
13 Apr 2021 15:28:54,179 INFO : Updating the 'Raw Data' tab configuration
13 Apr 2021 15:28:54,185 INFO : Updating dataFileUrls for run MRM Cerebelum_2021-02-24_13-23-28.sky.zip; targetedms run ID 108081
13 Apr 2021 15:28:54,185 INFO : Updating dataFileUrl...
13 Apr 2021 15:28:54,185 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/University%20of%20Lleida%20Biochemistry%20of%20Oxidative%20Stress%20-%20I151F%20characterization_b626da87-7ed2-1039-a447-fea6ddf5a122/_temp__2021-04-13_15-21-28/export/xar/experiments_and_runs.xar.exploded/Run102340/MRM%20Cerebelum_2021-02-24_13-23-28.sky.zip
13 Apr 2021 15:28:54,186 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/University%20of%20Lleida%20Biochemistry%20of%20Oxidative%20Stress%20-%20I151F%20characterization/@files/MRM%20Cerebelum_2021-02-24_13-23-28.sky.zip
13 Apr 2021 15:28:54,188 INFO : Updating dataFileUrl...
13 Apr 2021 15:28:54,188 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/University%20of%20Lleida%20Biochemistry%20of%20Oxidative%20Stress%20-%20I151F%20characterization_b626da87-7ed2-1039-a447-fea6ddf5a122/_temp__2021-04-13_15-21-28/export/xar/experiments_and_runs.xar.exploded/Run102340/MRM%20Cerebelum_2021-02-24_13-23-28/MRM%20Cerebelum.skyd
13 Apr 2021 15:28:54,188 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/University%20of%20Lleida%20Biochemistry%20of%20Oxidative%20Stress%20-%20I151F%20characterization/@files/MRM%20Cerebelum_2021-02-24_13-23-28/MRM%20Cerebelum.skyd
13 Apr 2021 15:28:54,192 INFO : Updating dataFileUrls for run MRM Heart_2021-02-26_13-08-25.sky.zip; targetedms run ID 108082
13 Apr 2021 15:28:54,192 INFO : Updating dataFileUrl...
13 Apr 2021 15:28:54,192 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/University%20of%20Lleida%20Biochemistry%20of%20Oxidative%20Stress%20-%20I151F%20characterization_b626da87-7ed2-1039-a447-fea6ddf5a122/_temp__2021-04-13_15-21-28/export/xar/experiments_and_runs.xar.exploded/Run102521/MRM%20Heart_2021-02-26_13-08-25.sky.zip
13 Apr 2021 15:28:54,192 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/University%20of%20Lleida%20Biochemistry%20of%20Oxidative%20Stress%20-%20I151F%20characterization/@files/MRM%20Heart_2021-02-26_13-08-25.sky.zip
13 Apr 2021 15:28:54,194 INFO : Updating dataFileUrl...
13 Apr 2021 15:28:54,194 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/University%20of%20Lleida%20Biochemistry%20of%20Oxidative%20Stress%20-%20I151F%20characterization_b626da87-7ed2-1039-a447-fea6ddf5a122/_temp__2021-04-13_15-21-28/export/xar/experiments_and_runs.xar.exploded/Run102521/MRM%20Heart_2021-02-26_13-08-25/MRM%20Heart.skyd
13 Apr 2021 15:28:54,194 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/University%20of%20Lleida%20Biochemistry%20of%20Oxidative%20Stress%20-%20I151F%20characterization/@files/MRM%20Heart_2021-02-26_13-08-25/MRM%20Heart.skyd
13 Apr 2021 15:28:54,197 INFO : Updating dataFileUrls for run MRM Brain_2021-02-24_11-23-27.sky.zip; targetedms run ID 108083
13 Apr 2021 15:28:54,198 INFO : Adding ExpData for .skyd file
13 Apr 2021 15:28:54,198 INFO : Updating dataFileUrl...
13 Apr 2021 15:28:54,198 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/University%20of%20Lleida%20Biochemistry%20of%20Oxidative%20Stress%20-%20I151F%20characterization_b626da87-7ed2-1039-a447-fea6ddf5a122/_temp__2021-04-13_15-21-28/export/xar/experiments_and_runs.xar.exploded/Run102531/MRM%20Brain_2021-02-24_11-23-27.sky.zip
13 Apr 2021 15:28:54,198 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/University%20of%20Lleida%20Biochemistry%20of%20Oxidative%20Stress%20-%20I151F%20characterization/@files/MRM%20Brain_2021-02-24_11-23-27.sky.zip
13 Apr 2021 15:28:54,200 INFO : Updating dataFileUrl...
13 Apr 2021 15:28:54,200 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/University%20of%20Lleida%20Biochemistry%20of%20Oxidative%20Stress%20-%20I151F%20characterization_b626da87-7ed2-1039-a447-fea6ddf5a122/_temp__2021-04-13_15-21-28/export/xar/experiments_and_runs.xar.exploded/Run102531/MRM%20Brain.skyd
13 Apr 2021 15:28:54,200 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/University%20of%20Lleida%20Biochemistry%20of%20Oxidative%20Stress%20-%20I151F%20characterization/@files/MRM%20Brain_2021-02-24_11-23-27/MRM%20Brain.skyd
13 Apr 2021 15:28:54,202 INFO : Updating dataFileUrl...
13 Apr 2021 15:28:54,202 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/University%20of%20Lleida%20Biochemistry%20of%20Oxidative%20Stress%20-%20I151F%20characterization_b626da87-7ed2-1039-a447-fea6ddf5a122/_temp__2021-04-13_15-21-28/export/xar/experiments_and_runs.xar.exploded/Run102531/MRM%20Brain_2021-02-24_11-23-27/MRM%20Brain.skyd
13 Apr 2021 15:28:54,202 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/University%20of%20Lleida%20Biochemistry%20of%20Oxidative%20Stress%20-%20I151F%20characterization/@files/MRM%20Brain_2021-02-24_11-23-27/MRM%20Brain.skyd
13 Apr 2021 15:28:54,204 INFO : Making folder public.
13 Apr 2021 15:28:54,214 INFO : Hiding the Data Pipeline tab.
13 Apr 2021 15:28:54,339 INFO : Emailing submitter.
13 Apr 2021 15:28:54,488 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'