13 Sep 2021 14:55:23,193 INFO : Copying experiment "SARS-CoV2 Immunocomplex by LC-MS/MS on vaccinated cohort" from folder /University College London  - BMSC/Immunocovidome assay to /Panorama Public/2021/University College London BMSC - Immunocovidome assay
13 Sep 2021 14:55:23,193 INFO : =======================================
13 Sep 2021 14:55:23,285 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
13 Sep 2021 14:55:23,285 INFO : 
13 Sep 2021 14:55:23,285 INFO : Exporting experiment.
13 Sep 2021 14:55:41,571 INFO : 
13 Sep 2021 14:55:41,571 INFO : Experiment export completed successfully.
13 Sep 2021 14:55:41,571 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
13 Sep 2021 14:55:41,616 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
13 Sep 2021 14:55:41,616 INFO : 
13 Sep 2021 14:55:41,616 INFO : Importing experiment.
13 Sep 2021 14:55:41,659 INFO : Loading folder properties (folder type, settings and active modules)
13 Sep 2021 14:55:41,740 INFO : Done importing folder properties (folder type, settings and active modules)
13 Sep 2021 14:55:41,744 INFO : Loading etl definitions
13 Sep 2021 14:55:41,749 INFO : Loading wikis
13 Sep 2021 14:55:41,753 INFO : 0 wikis imported
13 Sep 2021 14:55:41,753 INFO : Done importing wikis
13 Sep 2021 14:55:41,753 INFO : Starting to copy files
13 Sep 2021 14:55:44,045 INFO : Copied 820 files
13 Sep 2021 14:55:44,045 INFO : Ensuring exp.data rows exist for imported files
13 Sep 2021 14:55:46,995 INFO : Starting Sample Type and Data Class import
13 Sep 2021 14:55:46,996 INFO : No types XAR file to process.
13 Sep 2021 14:55:46,996 INFO : Finished importing Sample Types and Data Classes
13 Sep 2021 14:55:46,998 INFO : Loading xar
13 Sep 2021 14:55:47,255 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9079:TargetedMS.ImportSkyZip'
13 Sep 2021 14:55:47,258 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9079:TargetedMS.ImportSkyZip.Core'
13 Sep 2021 14:55:47,260 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9079:TargetedMS.ImportSkyZip.Output'
13 Sep 2021 14:55:47,260 DEBUG: Protocol import complete
13 Sep 2021 14:55:47,263 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-9079:SARS-CoV2+Immunocomplex+by+LC-MS%2FMS+on+vaccinated+cohort'
13 Sep 2021 14:55:47,263 DEBUG: Experiment/Run group import complete
13 Sep 2021 14:55:47,273 DEBUG: Protocol action set import complete
13 Sep 2021 14:55:47,288 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9079:TargetedMS.ImportSkyZip'
13 Sep 2021 14:55:47,301 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9079:3a08f6a3-f5e5-1039-b54f-fea6ddf5779e'
13 Sep 2021 14:55:47,306 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9079:3a08f694-f5e5-1039-b54f-fea6ddf5779e'
13 Sep 2021 14:55:47,306 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9079:TargetedMS.ImportSkyZip.Core'
13 Sep 2021 14:55:47,309 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9079:TargetedMS.ImportSkyZip.Output'
13 Sep 2021 14:55:47,311 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9079:3a08f710-f5e5-1039-b54f-fea6ddf5779e'
13 Sep 2021 14:55:47,318 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9079:TargetedMS.ImportSkyZip'
13 Sep 2021 14:55:47,322 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9079:3a08f22d-f5e5-1039-b54f-fea6ddf5779e'
13 Sep 2021 14:55:47,327 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9079:3a08f21e-f5e5-1039-b54f-fea6ddf5779e'
13 Sep 2021 14:55:47,327 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9079:TargetedMS.ImportSkyZip.Core'
13 Sep 2021 14:55:47,329 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9079:TargetedMS.ImportSkyZip.Output'
13 Sep 2021 14:55:47,329 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9079:3a08f2b2-f5e5-1039-b54f-fea6ddf5779e'
13 Sep 2021 14:55:47,341 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9079:TargetedMS.ImportSkyZip'
13 Sep 2021 14:55:47,347 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9079:3a08f8c8-f5e5-1039-b54f-fea6ddf5779e'
13 Sep 2021 14:55:47,351 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9079:3a08f8ba-f5e5-1039-b54f-fea6ddf5779e'
13 Sep 2021 14:55:47,351 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9079:TargetedMS.ImportSkyZip.Core'
13 Sep 2021 14:55:47,353 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9079:TargetedMS.ImportSkyZip.Output'
13 Sep 2021 14:55:47,353 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9079:3a08f915-f5e5-1039-b54f-fea6ddf5779e'
13 Sep 2021 14:55:47,357 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/University%20College%20London%20BMSC%20-%20Immunocovidome%20assay_1fefff18-f70b-1039-b54f-fea6ddf5779e/_temp__2021-09-13_14-55-22/export/xar/experiments_and_runs.xar.exploded/Run117309/Immunocovidome%20Delta_2021-09-12_12-04-22/Immunocovidome%20Delta.skyd into the system
13 Sep 2021 14:55:47,358 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/University%20College%20London%20BMSC%20-%20Immunocovidome%20assay_1fefff18-f70b-1039-b54f-fea6ddf5779e/_temp__2021-09-13_14-55-22/export/xar/experiments_and_runs.xar.exploded/Run117309/Immunocovidome%20Delta_2021-09-12_12-04-22/Immunocovidome%20Delta.skyd into the system
13 Sep 2021 14:55:47,358 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/University%20College%20London%20BMSC%20-%20Immunocovidome%20assay_1fefff18-f70b-1039-b54f-fea6ddf5779e/_temp__2021-09-13_14-55-22/export/xar/experiments_and_runs.xar.exploded/Run117309/Immunocovidome%20Delta_2021-09-12_12-04-22.sky.zip into the system
13 Sep 2021 14:55:47,360 INFO : Starting import from Immunocovidome Delta_2021-09-12_12-04-22.sky.zip
13 Sep 2021 14:55:47,366 INFO : Starting to import Skyline document from Immunocovidome Delta_2021-09-12_12-04-22.sky.zip
13 Sep 2021 14:55:47,367 INFO : Expanding Immunocovidome Delta.skyd
13 Sep 2021 14:55:47,409 INFO : Expanding Immunocovidome Delta.sky.view
13 Sep 2021 14:55:47,409 INFO : Expanding Immunocovidome Delta.sky
13 Sep 2021 14:55:47,443 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22
13 Sep 2021 14:55:47,459 INFO : 1% Done
13 Sep 2021 14:55:47,493 DEBUG: Starting to load chromatogram headers
13 Sep 2021 14:55:47,506 DEBUG: Done loading chromatogram headers
13 Sep 2021 14:55:47,750 INFO : Inserting A2AP_LGN
13 Sep 2021 14:55:47,766 INFO : 4% Done
13 Sep 2021 14:55:47,919 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:47,919 INFO : Inserting A2M_FEV
13 Sep 2021 14:55:47,930 INFO : 6% Done
13 Sep 2021 14:55:48,084 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:48,084 INFO : Inserting AACT_LIN
13 Sep 2021 14:55:48,095 INFO : 9% Done
13 Sep 2021 14:55:48,249 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:48,249 INFO : Inserting AGT_DPT
13 Sep 2021 14:55:48,260 INFO : 11% Done
13 Sep 2021 14:55:48,401 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:48,402 INFO : Inserting APOC3_DAL
13 Sep 2021 14:55:48,410 INFO : 14% Done
13 Sep 2021 14:55:48,546 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:48,546 INFO : Inserting C4b_VGD
13 Sep 2021 14:55:48,558 INFO : 17% Done
13 Sep 2021 14:55:48,680 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:48,680 INFO : Inserting C4BPA_YTC
13 Sep 2021 14:55:48,691 INFO : 19% Done
13 Sep 2021 14:55:48,853 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:48,853 INFO : Inserting C5b_VFQ
13 Sep 2021 14:55:48,862 INFO : 22% Done
13 Sep 2021 14:55:48,981 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:48,981 INFO : Inserting C8A_MES
13 Sep 2021 14:55:48,991 INFO : 23% Done
13 Sep 2021 14:55:49,144 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:49,145 INFO : Inserting C8G_SLP
13 Sep 2021 14:55:49,154 INFO : 25% Done
13 Sep 2021 14:55:49,294 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:49,294 INFO : Inserting C9_LSP
13 Sep 2021 14:55:49,304 INFO : 27% Done
13 Sep 2021 14:55:49,411 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:49,411 INFO : Inserting CFBb_DIS
13 Sep 2021 14:55:49,420 INFO : 29% Done
13 Sep 2021 14:55:49,568 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:49,568 INFO : Inserting GSN_AVE
13 Sep 2021 14:55:49,578 INFO : 32% Done
13 Sep 2021 14:55:49,700 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:49,700 INFO : Inserting ITIH1_VTY
13 Sep 2021 14:55:49,708 INFO : 34% Done
13 Sep 2021 14:55:49,855 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:49,855 INFO : Inserting PON1_IFF
13 Sep 2021 14:55:49,864 INFO : 36% Done
13 Sep 2021 14:55:49,971 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:49,971 INFO : Inserting RAP1AB_LVV
13 Sep 2021 14:55:49,980 INFO : 39% Done
13 Sep 2021 14:55:50,097 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:50,097 INFO : Inserting SERPIND1_TLE
13 Sep 2021 14:55:50,106 INFO : 41% Done
13 Sep 2021 14:55:50,250 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:50,250 INFO : Inserting C3_AED
13 Sep 2021 14:55:50,259 INFO : 43% Done
13 Sep 2021 14:55:50,368 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:50,368 INFO : Inserting APOA1_LSP
13 Sep 2021 14:55:50,378 INFO : 46% Done
13 Sep 2021 14:55:50,481 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:50,481 INFO : Inserting APOE_AAT
13 Sep 2021 14:55:50,491 INFO : 49% Done
13 Sep 2021 14:55:50,604 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:50,605 INFO : Inserting TTHY_GSP
13 Sep 2021 14:55:50,614 INFO : 51% Done
13 Sep 2021 14:55:50,732 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:50,732 INFO : Inserting VTN_FED
13 Sep 2021 14:55:50,741 INFO : 54% Done
13 Sep 2021 14:55:50,858 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:50,859 INFO : Inserting Common
13 Sep 2021 14:55:50,867 INFO : 56% Done
13 Sep 2021 14:55:50,980 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:50,980 INFO : Inserting IgG1
13 Sep 2021 14:55:50,990 INFO : 59% Done
13 Sep 2021 14:55:51,093 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:51,094 INFO : Inserting IgG2
13 Sep 2021 14:55:51,103 INFO : 62% Done
13 Sep 2021 14:55:51,208 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:51,208 INFO : Inserting IgG3
13 Sep 2021 14:55:51,217 INFO : 64% Done
13 Sep 2021 14:55:51,348 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:51,348 INFO : Inserting IgG4
13 Sep 2021 14:55:51,357 INFO : 67% Done
13 Sep 2021 14:55:51,466 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:51,466 INFO : Inserting IgA1
13 Sep 2021 14:55:51,475 INFO : 69% Done
13 Sep 2021 14:55:51,597 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:51,597 INFO : Inserting IgM
13 Sep 2021 14:55:51,607 INFO : 72% Done
13 Sep 2021 14:55:51,711 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:51,711 INFO : Inserting Kappa
13 Sep 2021 14:55:51,720 INFO : 74% Done
13 Sep 2021 14:55:51,845 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:51,845 INFO : Inserting Lambda
13 Sep 2021 14:55:51,854 INFO : 76% Done
13 Sep 2021 14:55:51,957 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:51,962 INFO : Inserting Myo
13 Sep 2021 14:55:51,972 INFO : 79% Done
13 Sep 2021 14:55:52,076 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:52,080 INFO : Inserting Spike
13 Sep 2021 14:55:52,089 INFO : 81% Done
13 Sep 2021 14:55:52,201 INFO : 84% Done
13 Sep 2021 14:55:52,313 INFO : 87% Done
13 Sep 2021 14:55:52,426 INFO : 88% Done
13 Sep 2021 14:55:52,549 DEBUG: Total peptides inserted: 4
13 Sep 2021 14:55:52,554 INFO : Inserting C1QA_SLG
13 Sep 2021 14:55:52,563 INFO : 90% Done
13 Sep 2021 14:55:52,706 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:52,710 INFO : Inserting C1QC_FQS
13 Sep 2021 14:55:52,720 INFO : 93% Done
13 Sep 2021 14:55:52,842 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:52,846 INFO : Inserting C1QB_GNL
13 Sep 2021 14:55:52,857 INFO : 95% Done
13 Sep 2021 14:55:52,985 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:52,989 INFO : Inserting ALB_LVN
13 Sep 2021 14:55:52,997 INFO : 98% Done
13 Sep 2021 14:55:53,103 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:53,104 INFO : Done parsing Skyline document.
13 Sep 2021 14:55:53,105 INFO : Creating and populating temp tables for Proportion values
13 Sep 2021 14:55:53,182 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
13 Sep 2021 14:55:53,573 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
13 Sep 2021 14:55:53,859 INFO : Cleaning up temp tables
13 Sep 2021 14:55:54,117 INFO : Completed import of Skyline document from Immunocovidome Delta_2021-09-12_12-04-22.sky.zip
13 Sep 2021 14:55:54,120 INFO : 100% Done
13 Sep 2021 14:55:54,129 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/University%20College%20London%20BMSC%20-%20Immunocovidome%20assay_1fefff18-f70b-1039-b54f-fea6ddf5779e/_temp__2021-09-13_14-55-22/export/xar/experiments_and_runs.xar.exploded/Run117309/Immunocovidome%20Delta_2021-09-12_12-04-22.sky.zip into the system
13 Sep 2021 14:55:54,129 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/University%20College%20London%20BMSC%20-%20Immunocovidome%20assay_1fefff18-f70b-1039-b54f-fea6ddf5779e/_temp__2021-09-13_14-55-22/export/xar/experiments_and_runs.xar.exploded/Run117308/Immunocovidome%20study%20WKS_2021-09-12_12-02-52/Immunocovidome%20study%20WKS.skyd into the system
13 Sep 2021 14:55:54,129 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/University%20College%20London%20BMSC%20-%20Immunocovidome%20assay_1fefff18-f70b-1039-b54f-fea6ddf5779e/_temp__2021-09-13_14-55-22/export/xar/experiments_and_runs.xar.exploded/Run117308/Immunocovidome%20study%20WKS_2021-09-12_12-02-52/Immunocovidome%20study%20WKS.skyd into the system
13 Sep 2021 14:55:54,129 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/University%20College%20London%20BMSC%20-%20Immunocovidome%20assay_1fefff18-f70b-1039-b54f-fea6ddf5779e/_temp__2021-09-13_14-55-22/export/xar/experiments_and_runs.xar.exploded/Run117308/Immunocovidome%20study%20WKS_2021-09-12_12-02-52.sky.zip into the system
13 Sep 2021 14:55:54,130 INFO : Starting import from Immunocovidome study WKS_2021-09-12_12-02-52.sky.zip
13 Sep 2021 14:55:54,133 INFO : Starting to import Skyline document from Immunocovidome study WKS_2021-09-12_12-02-52.sky.zip
13 Sep 2021 14:55:54,137 INFO : Expanding Immunocovidome study WKS.skyd
13 Sep 2021 14:55:54,221 INFO : Expanding Immunocovidome study WKS.sky.view
13 Sep 2021 14:55:54,221 INFO : Expanding Immunocovidome study WKS.sky
13 Sep 2021 14:55:54,276 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22
13 Sep 2021 14:55:54,287 INFO : 1% Done
13 Sep 2021 14:55:54,362 DEBUG: Starting to load chromatogram headers
13 Sep 2021 14:55:54,383 DEBUG: Done loading chromatogram headers
13 Sep 2021 14:55:54,778 INFO : Inserting A2AP_LGN
13 Sep 2021 14:55:54,792 INFO : 4% Done
13 Sep 2021 14:55:54,990 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:54,990 INFO : Inserting A2M_FEV
13 Sep 2021 14:55:55,003 INFO : 6% Done
13 Sep 2021 14:55:55,201 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:55,201 INFO : Inserting AACT_LIN
13 Sep 2021 14:55:55,215 INFO : 9% Done
13 Sep 2021 14:55:55,420 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:55,420 INFO : Inserting AGT_DPT
13 Sep 2021 14:55:55,434 INFO : 11% Done
13 Sep 2021 14:55:55,631 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:55,631 INFO : Inserting APOC3_DAL
13 Sep 2021 14:55:55,645 INFO : 14% Done
13 Sep 2021 14:55:55,834 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:55,834 INFO : Inserting C4b_VGD
13 Sep 2021 14:55:55,848 INFO : 16% Done
13 Sep 2021 14:55:56,035 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:56,035 INFO : Inserting C4BPA_YTC
13 Sep 2021 14:55:56,049 INFO : 19% Done
13 Sep 2021 14:55:56,244 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:56,244 INFO : Inserting C5b_VFQ
13 Sep 2021 14:55:56,258 INFO : 21% Done
13 Sep 2021 14:55:56,453 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:56,453 INFO : Inserting C8A_MES
13 Sep 2021 14:55:56,466 INFO : 23% Done
13 Sep 2021 14:55:56,706 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:56,706 INFO : Inserting C8G_SLP
13 Sep 2021 14:55:56,723 INFO : 25% Done
13 Sep 2021 14:55:56,938 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:56,938 INFO : Inserting C9_LSP
13 Sep 2021 14:55:56,955 INFO : 27% Done
13 Sep 2021 14:55:57,139 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:57,140 INFO : Inserting CFBb_DIS
13 Sep 2021 14:55:57,154 INFO : 30% Done
13 Sep 2021 14:55:57,424 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:57,425 INFO : Inserting GSN_AVE
13 Sep 2021 14:55:57,439 INFO : 32% Done
13 Sep 2021 14:55:57,646 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:57,646 INFO : Inserting ITIH1_VTY
13 Sep 2021 14:55:57,667 INFO : 34% Done
13 Sep 2021 14:55:57,901 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:57,904 INFO : 35% Done
13 Sep 2021 14:55:57,904 INFO : Inserting PON1_IFF
13 Sep 2021 14:55:57,918 INFO : 37% Done
13 Sep 2021 14:55:58,094 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:58,094 INFO : Inserting RAP1AB_LVV
13 Sep 2021 14:55:58,108 INFO : 39% Done
13 Sep 2021 14:55:58,306 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:58,306 INFO : Inserting SERPIND1_TLE
13 Sep 2021 14:55:58,320 INFO : 42% Done
13 Sep 2021 14:55:58,528 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:58,528 INFO : Inserting C3_AED
13 Sep 2021 14:55:58,544 INFO : 44% Done
13 Sep 2021 14:55:58,730 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:58,730 INFO : Inserting APOA1_LSP
13 Sep 2021 14:55:58,743 INFO : 47% Done
13 Sep 2021 14:55:58,918 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:58,919 INFO : Inserting APOE_AAT
13 Sep 2021 14:55:58,934 INFO : 49% Done
13 Sep 2021 14:55:59,127 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:59,127 INFO : Inserting TTHY_GSP
13 Sep 2021 14:55:59,142 INFO : 52% Done
13 Sep 2021 14:55:59,333 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:59,333 INFO : Inserting VTN_FED
13 Sep 2021 14:55:59,347 INFO : 54% Done
13 Sep 2021 14:55:59,529 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:59,529 INFO : Inserting Common
13 Sep 2021 14:55:59,543 INFO : 57% Done
13 Sep 2021 14:55:59,726 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:59,726 INFO : Inserting IgG1
13 Sep 2021 14:55:59,740 INFO : 59% Done
13 Sep 2021 14:55:59,924 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:55:59,924 INFO : Inserting IgG2
13 Sep 2021 14:55:59,939 INFO : 62% Done
13 Sep 2021 14:56:00,126 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:00,126 INFO : Inserting IgG3
13 Sep 2021 14:56:00,149 INFO : 64% Done
13 Sep 2021 14:56:00,375 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:00,375 INFO : Inserting IgG4
13 Sep 2021 14:56:00,390 INFO : 67% Done
13 Sep 2021 14:56:00,636 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:00,636 INFO : Inserting IgA1
13 Sep 2021 14:56:00,669 INFO : 69% Done
13 Sep 2021 14:56:00,889 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:00,889 INFO : Inserting IgM
13 Sep 2021 14:56:00,903 INFO : 72% Done
13 Sep 2021 14:56:01,136 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:01,136 INFO : Inserting Kappa
13 Sep 2021 14:56:01,150 INFO : 74% Done
13 Sep 2021 14:56:01,381 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:01,381 INFO : Inserting Lambda
13 Sep 2021 14:56:01,395 INFO : 76% Done
13 Sep 2021 14:56:01,630 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:01,634 INFO : Inserting Myo
13 Sep 2021 14:56:01,647 INFO : 78% Done
13 Sep 2021 14:56:01,885 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:01,889 INFO : Inserting Spike
13 Sep 2021 14:56:01,902 INFO : 81% Done
13 Sep 2021 14:56:02,150 INFO : 83% Done
13 Sep 2021 14:56:02,398 INFO : 86% Done
13 Sep 2021 14:56:02,644 INFO : 88% Done
13 Sep 2021 14:56:02,897 DEBUG: Total peptides inserted: 4
13 Sep 2021 14:56:02,901 INFO : Inserting C1QA_SLG
13 Sep 2021 14:56:02,914 INFO : 91% Done
13 Sep 2021 14:56:03,182 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:03,186 INFO : Inserting C1QC_FQS
13 Sep 2021 14:56:03,202 INFO : 93% Done
13 Sep 2021 14:56:03,421 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:03,424 INFO : Inserting C1QB_GNL
13 Sep 2021 14:56:03,438 INFO : 96% Done
13 Sep 2021 14:56:03,627 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:03,630 INFO : Inserting ALB_LVN
13 Sep 2021 14:56:03,643 INFO : 98% Done
13 Sep 2021 14:56:03,827 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:03,828 INFO : Done parsing Skyline document.
13 Sep 2021 14:56:03,830 INFO : Creating and populating temp tables for Proportion values
13 Sep 2021 14:56:03,950 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
13 Sep 2021 14:56:04,600 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
13 Sep 2021 14:56:05,126 INFO : Cleaning up temp tables
13 Sep 2021 14:56:05,367 INFO : Completed import of Skyline document from Immunocovidome study WKS_2021-09-12_12-02-52.sky.zip
13 Sep 2021 14:56:05,370 INFO : 100% Done
13 Sep 2021 14:56:05,374 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/University%20College%20London%20BMSC%20-%20Immunocovidome%20assay_1fefff18-f70b-1039-b54f-fea6ddf5779e/_temp__2021-09-13_14-55-22/export/xar/experiments_and_runs.xar.exploded/Run117308/Immunocovidome%20study%20WKS_2021-09-12_12-02-52.sky.zip into the system
13 Sep 2021 14:56:05,374 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/University%20College%20London%20BMSC%20-%20Immunocovidome%20assay_1fefff18-f70b-1039-b54f-fea6ddf5779e/_temp__2021-09-13_14-55-22/export/xar/experiments_and_runs.xar.exploded/Run117310/Immunocovidome%20curve%20and%20repeats_2021-09-12_12-05-04/Immunocovidome%20curve%20and%20repeats.skyd into the system
13 Sep 2021 14:56:05,374 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/University%20College%20London%20BMSC%20-%20Immunocovidome%20assay_1fefff18-f70b-1039-b54f-fea6ddf5779e/_temp__2021-09-13_14-55-22/export/xar/experiments_and_runs.xar.exploded/Run117310/Immunocovidome%20curve%20and%20repeats_2021-09-12_12-05-04/Immunocovidome%20curve%20and%20repeats.skyd into the system
13 Sep 2021 14:56:05,374 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/University%20College%20London%20BMSC%20-%20Immunocovidome%20assay_1fefff18-f70b-1039-b54f-fea6ddf5779e/_temp__2021-09-13_14-55-22/export/xar/experiments_and_runs.xar.exploded/Run117310/Immunocovidome%20curve%20and%20repeats_2021-09-12_12-05-04.sky.zip into the system
13 Sep 2021 14:56:05,375 INFO : Starting import from Immunocovidome curve and repeats_2021-09-12_12-05-04.sky.zip
13 Sep 2021 14:56:05,379 INFO : Starting to import Skyline document from Immunocovidome curve and repeats_2021-09-12_12-05-04.sky.zip
13 Sep 2021 14:56:05,380 INFO : Expanding Immunocovidome curve and repeats.skyd
13 Sep 2021 14:56:05,388 INFO : Expanding Immunocovidome curve and repeats.sky.view
13 Sep 2021 14:56:05,388 INFO : Expanding Immunocovidome curve and repeats.sky
13 Sep 2021 14:56:05,396 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22
13 Sep 2021 14:56:05,401 INFO : 2% Done
13 Sep 2021 14:56:05,409 DEBUG: Starting to load chromatogram headers
13 Sep 2021 14:56:05,411 DEBUG: Done loading chromatogram headers
13 Sep 2021 14:56:05,517 INFO : Inserting A2AP_LGN
13 Sep 2021 14:56:05,521 INFO : 4% Done
13 Sep 2021 14:56:05,545 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:05,545 INFO : Inserting A2M_FEV
13 Sep 2021 14:56:05,549 INFO : 6% Done
13 Sep 2021 14:56:05,576 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:05,576 INFO : Inserting AACT_LIN
13 Sep 2021 14:56:05,580 INFO : 9% Done
13 Sep 2021 14:56:05,603 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:05,603 INFO : Inserting AGT_DPT
13 Sep 2021 14:56:05,606 INFO : 11% Done
13 Sep 2021 14:56:05,629 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:05,629 INFO : Inserting APOC3_DAL
13 Sep 2021 14:56:05,632 INFO : 14% Done
13 Sep 2021 14:56:05,658 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:05,658 INFO : Inserting C4b_VGD
13 Sep 2021 14:56:05,661 INFO : 16% Done
13 Sep 2021 14:56:05,685 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:05,685 INFO : Inserting C4BPA_YTC
13 Sep 2021 14:56:05,688 INFO : 18% Done
13 Sep 2021 14:56:05,711 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:05,711 INFO : Inserting C5b_VFQ
13 Sep 2021 14:56:05,714 INFO : 21% Done
13 Sep 2021 14:56:05,740 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:05,740 INFO : Inserting C8A_MES
13 Sep 2021 14:56:05,743 INFO : 23% Done
13 Sep 2021 14:56:05,776 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:05,776 INFO : Inserting C8G_SLP
13 Sep 2021 14:56:05,780 INFO : 25% Done
13 Sep 2021 14:56:05,809 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:05,809 INFO : Inserting C9_LSP
13 Sep 2021 14:56:05,812 INFO : 27% Done
13 Sep 2021 14:56:05,834 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:05,834 INFO : Inserting CFBb_DIS
13 Sep 2021 14:56:05,837 INFO : 30% Done
13 Sep 2021 14:56:05,861 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:05,861 INFO : Inserting GSN_AVE
13 Sep 2021 14:56:05,864 INFO : 32% Done
13 Sep 2021 14:56:05,887 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:05,887 INFO : Inserting ITIH1_VTY
13 Sep 2021 14:56:05,890 INFO : 34% Done
13 Sep 2021 14:56:05,914 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:05,914 INFO : Inserting PON1_IFF
13 Sep 2021 14:56:05,917 INFO : 37% Done
13 Sep 2021 14:56:05,941 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:05,941 INFO : Inserting RAP1AB_LVV
13 Sep 2021 14:56:05,944 INFO : 40% Done
13 Sep 2021 14:56:05,967 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:05,967 INFO : Inserting SERPIND1_TLE
13 Sep 2021 14:56:05,970 INFO : 42% Done
13 Sep 2021 14:56:05,997 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:05,997 INFO : Inserting C3_AED
13 Sep 2021 14:56:06,000 INFO : 44% Done
13 Sep 2021 14:56:06,022 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:06,022 INFO : Inserting APOA1_LSP
13 Sep 2021 14:56:06,025 INFO : 47% Done
13 Sep 2021 14:56:06,044 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:06,044 INFO : Inserting APOE_AAT
13 Sep 2021 14:56:06,047 INFO : 49% Done
13 Sep 2021 14:56:06,068 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:06,068 INFO : Inserting TTHY_GSP
13 Sep 2021 14:56:06,071 INFO : 52% Done
13 Sep 2021 14:56:06,091 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:06,091 INFO : Inserting VTN_FED
13 Sep 2021 14:56:06,094 INFO : 54% Done
13 Sep 2021 14:56:06,116 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:06,116 INFO : Inserting Common
13 Sep 2021 14:56:06,119 INFO : 57% Done
13 Sep 2021 14:56:06,139 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:06,139 INFO : Inserting IgG1
13 Sep 2021 14:56:06,142 INFO : 59% Done
13 Sep 2021 14:56:06,161 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:06,161 INFO : Inserting IgG2
13 Sep 2021 14:56:06,165 INFO : 61% Done
13 Sep 2021 14:56:06,183 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:06,183 INFO : Inserting IgG3
13 Sep 2021 14:56:06,186 INFO : 64% Done
13 Sep 2021 14:56:06,207 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:06,207 INFO : Inserting IgG4
13 Sep 2021 14:56:06,211 INFO : 67% Done
13 Sep 2021 14:56:06,230 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:06,230 INFO : Inserting IgA1
13 Sep 2021 14:56:06,234 INFO : 69% Done
13 Sep 2021 14:56:06,255 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:06,255 INFO : Inserting IgM
13 Sep 2021 14:56:06,258 INFO : 71% Done
13 Sep 2021 14:56:06,280 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:06,280 INFO : Inserting Kappa
13 Sep 2021 14:56:06,283 INFO : 74% Done
13 Sep 2021 14:56:06,304 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:06,304 INFO : Inserting Lambda
13 Sep 2021 14:56:06,307 INFO : 76% Done
13 Sep 2021 14:56:06,328 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:06,330 INFO : Inserting Myo
13 Sep 2021 14:56:06,334 INFO : 78% Done
13 Sep 2021 14:56:06,353 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:06,356 INFO : Inserting Spike
13 Sep 2021 14:56:06,359 INFO : 81% Done
13 Sep 2021 14:56:06,385 INFO : 83% Done
13 Sep 2021 14:56:06,414 INFO : 86% Done
13 Sep 2021 14:56:06,443 INFO : 88% Done
13 Sep 2021 14:56:06,471 DEBUG: Total peptides inserted: 4
13 Sep 2021 14:56:06,475 INFO : Inserting C1QA_SLG
13 Sep 2021 14:56:06,479 INFO : 91% Done
13 Sep 2021 14:56:06,511 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:06,515 INFO : Inserting C1QC_FQS
13 Sep 2021 14:56:06,520 INFO : 93% Done
13 Sep 2021 14:56:06,545 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:06,548 INFO : Inserting C1QB_GNL
13 Sep 2021 14:56:06,552 INFO : 95% Done
13 Sep 2021 14:56:06,574 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:06,577 INFO : 96% Done
13 Sep 2021 14:56:06,580 INFO : Inserting ALB_LVN
13 Sep 2021 14:56:06,585 INFO : 98% Done
13 Sep 2021 14:56:06,608 DEBUG: Total peptides inserted: 1
13 Sep 2021 14:56:06,609 INFO : Done parsing Skyline document.
13 Sep 2021 14:56:06,610 INFO : Creating and populating temp tables for Proportion values
13 Sep 2021 14:56:06,631 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
13 Sep 2021 14:56:06,698 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
13 Sep 2021 14:56:06,748 INFO : Cleaning up temp tables
13 Sep 2021 14:56:06,986 INFO : Completed import of Skyline document from Immunocovidome curve and repeats_2021-09-12_12-05-04.sky.zip
13 Sep 2021 14:56:06,992 INFO : 100% Done
13 Sep 2021 14:56:06,996 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/University%20College%20London%20BMSC%20-%20Immunocovidome%20assay_1fefff18-f70b-1039-b54f-fea6ddf5779e/_temp__2021-09-13_14-55-22/export/xar/experiments_and_runs.xar.exploded/Run117310/Immunocovidome%20curve%20and%20repeats_2021-09-12_12-05-04.sky.zip into the system
13 Sep 2021 14:56:07,011 INFO : Done importing xar
13 Sep 2021 14:56:07,014 INFO : Loading pages and webpart properties
13 Sep 2021 14:56:07,128 INFO : Done importing pages and webpart properties
13 Sep 2021 14:56:07,129 INFO : 
13 Sep 2021 14:56:07,129 INFO : Experiment import completed successfully.
13 Sep 2021 14:56:07,129 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
13 Sep 2021 14:56:07,181 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
13 Sep 2021 14:56:07,181 INFO : 
13 Sep 2021 14:56:07,181 INFO : Finishing up experiment copy.
13 Sep 2021 14:56:07,183 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
13 Sep 2021 14:56:07,185 INFO : Assigning a ProteomeXchange ID.
13 Sep 2021 14:56:07,674 INFO : Assigning a DOI.
13 Sep 2021 14:56:10,087 INFO : Assigned DOI: 10.6069/36r1-3z82
13 Sep 2021 14:56:10,093 INFO : Updating access URL to point to the new copy of the data.
13 Sep 2021 14:56:10,105 INFO : Setting the 'copied' timestamp and journalExperimentId on the JournalExperiment table.
13 Sep 2021 14:56:10,108 INFO : Removing copy permissions given to journal.
13 Sep 2021 14:56:10,121 INFO : Adding read permissions to all users that are folder admins in the source container.
13 Sep 2021 14:56:10,133 INFO : Setting the TargetedMS folder type to 'Experimental Data'
13 Sep 2021 14:56:10,141 INFO : Updating the 'Raw Data' tab configuration
13 Sep 2021 14:56:10,149 INFO : Updating dataFileUrls for run Immunocovidome Delta_2021-09-12_12-04-22.sky.zip; targetedms run ID 120196
13 Sep 2021 14:56:10,149 INFO : Updating dataFileUrl...
13 Sep 2021 14:56:10,149 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/University%20College%20London%20BMSC%20-%20Immunocovidome%20assay_1fefff18-f70b-1039-b54f-fea6ddf5779e/_temp__2021-09-13_14-55-22/export/xar/experiments_and_runs.xar.exploded/Run117309/Immunocovidome%20Delta_2021-09-12_12-04-22/Immunocovidome%20Delta.skyd
13 Sep 2021 14:56:10,149 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/University%20College%20London%20BMSC%20-%20Immunocovidome%20assay/@files/Immunocovidome%20Delta_2021-09-12_12-04-22/Immunocovidome%20Delta.skyd
13 Sep 2021 14:56:10,152 INFO : Updating dataFileUrl...
13 Sep 2021 14:56:10,152 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/University%20College%20London%20BMSC%20-%20Immunocovidome%20assay_1fefff18-f70b-1039-b54f-fea6ddf5779e/_temp__2021-09-13_14-55-22/export/xar/experiments_and_runs.xar.exploded/Run117309/Immunocovidome%20Delta_2021-09-12_12-04-22.sky.zip
13 Sep 2021 14:56:10,153 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/University%20College%20London%20BMSC%20-%20Immunocovidome%20assay/@files/Immunocovidome%20Delta_2021-09-12_12-04-22.sky.zip
13 Sep 2021 14:56:10,158 INFO : Updating dataFileUrls for run Immunocovidome study WKS_2021-09-12_12-02-52.sky.zip; targetedms run ID 120197
13 Sep 2021 14:56:10,158 INFO : Updating dataFileUrl...
13 Sep 2021 14:56:10,158 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/University%20College%20London%20BMSC%20-%20Immunocovidome%20assay_1fefff18-f70b-1039-b54f-fea6ddf5779e/_temp__2021-09-13_14-55-22/export/xar/experiments_and_runs.xar.exploded/Run117308/Immunocovidome%20study%20WKS_2021-09-12_12-02-52/Immunocovidome%20study%20WKS.skyd
13 Sep 2021 14:56:10,158 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/University%20College%20London%20BMSC%20-%20Immunocovidome%20assay/@files/Immunocovidome%20study%20WKS_2021-09-12_12-02-52/Immunocovidome%20study%20WKS.skyd
13 Sep 2021 14:56:10,160 INFO : Updating dataFileUrl...
13 Sep 2021 14:56:10,160 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/University%20College%20London%20BMSC%20-%20Immunocovidome%20assay_1fefff18-f70b-1039-b54f-fea6ddf5779e/_temp__2021-09-13_14-55-22/export/xar/experiments_and_runs.xar.exploded/Run117308/Immunocovidome%20study%20WKS_2021-09-12_12-02-52.sky.zip
13 Sep 2021 14:56:10,160 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/University%20College%20London%20BMSC%20-%20Immunocovidome%20assay/@files/Immunocovidome%20study%20WKS_2021-09-12_12-02-52.sky.zip
13 Sep 2021 14:56:10,164 INFO : Updating dataFileUrls for run Immunocovidome curve and repeats_2021-09-12_12-05-04.sky.zip; targetedms run ID 120198
13 Sep 2021 14:56:10,164 INFO : Updating dataFileUrl...
13 Sep 2021 14:56:10,164 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/University%20College%20London%20BMSC%20-%20Immunocovidome%20assay_1fefff18-f70b-1039-b54f-fea6ddf5779e/_temp__2021-09-13_14-55-22/export/xar/experiments_and_runs.xar.exploded/Run117310/Immunocovidome%20curve%20and%20repeats_2021-09-12_12-05-04/Immunocovidome%20curve%20and%20repeats.skyd
13 Sep 2021 14:56:10,164 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/University%20College%20London%20BMSC%20-%20Immunocovidome%20assay/@files/Immunocovidome%20curve%20and%20repeats_2021-09-12_12-05-04/Immunocovidome%20curve%20and%20repeats.skyd
13 Sep 2021 14:56:10,165 INFO : Updating dataFileUrl...
13 Sep 2021 14:56:10,165 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/University%20College%20London%20BMSC%20-%20Immunocovidome%20assay_1fefff18-f70b-1039-b54f-fea6ddf5779e/_temp__2021-09-13_14-55-22/export/xar/experiments_and_runs.xar.exploded/Run117310/Immunocovidome%20curve%20and%20repeats_2021-09-12_12-05-04.sky.zip
13 Sep 2021 14:56:10,166 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/University%20College%20London%20BMSC%20-%20Immunocovidome%20assay/@files/Immunocovidome%20curve%20and%20repeats_2021-09-12_12-05-04.sky.zip
13 Sep 2021 14:56:10,171 INFO : Creating a reviewer account.
13 Sep 2021 14:56:10,407 INFO : Created reviewer with email: User panorama+reviewer66@proteinms.net
13 Sep 2021 14:56:10,415 INFO : Hiding the Data Pipeline tab.
13 Sep 2021 14:56:10,694 INFO : Emailing submitter.
13 Sep 2021 14:56:10,894 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'