07 Oct 2021 08:37:27,693 INFO : Copying experiment "Monitoring of histidine methylated Rpl3p" from folder /U of New South Wales - Wilkins Lab/Hpm1 histidine methylation of Rpl3 to /Panorama Public/2021/U of New South Wales Wilkins Lab - Hpm1 histidine methylation of Rpl3
07 Oct 2021 08:37:27,694 INFO : =======================================
07 Oct 2021 08:37:27,770 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
07 Oct 2021 08:37:27,770 INFO :
07 Oct 2021 08:37:27,770 INFO : Exporting experiment.
07 Oct 2021 08:37:31,745 INFO :
07 Oct 2021 08:37:31,745 INFO : Experiment export completed successfully.
07 Oct 2021 08:37:31,745 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
07 Oct 2021 08:37:31,773 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
07 Oct 2021 08:37:31,773 INFO :
07 Oct 2021 08:37:31,774 INFO : Importing experiment.
07 Oct 2021 08:37:31,778 INFO : Loading folder properties (folder type, settings and active modules)
07 Oct 2021 08:37:31,840 INFO : Done importing folder properties (folder type, settings and active modules)
07 Oct 2021 08:37:31,843 INFO : Loading etl definitions
07 Oct 2021 08:37:31,845 INFO : Loading wikis
07 Oct 2021 08:37:31,847 INFO : 0 wikis imported
07 Oct 2021 08:37:31,847 INFO : Done importing wikis
07 Oct 2021 08:37:31,848 INFO : Starting to copy files
07 Oct 2021 08:37:35,265 INFO : Copied 12 files
07 Oct 2021 08:37:35,265 INFO : Ensuring exp.data rows exist for imported files
07 Oct 2021 08:37:35,362 INFO : Starting Sample Type and Data Class import
07 Oct 2021 08:37:35,362 INFO : No types XAR file to process.
07 Oct 2021 08:37:35,363 INFO : Finished importing Sample Types and Data Classes
07 Oct 2021 08:37:35,366 INFO : Loading xar
07 Oct 2021 08:37:35,387 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9180:TargetedMS.ImportSkyZip'
07 Oct 2021 08:37:35,390 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9180:TargetedMS.ImportSkyZip.Core'
07 Oct 2021 08:37:35,393 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9180:TargetedMS.ImportSkyZip.Output'
07 Oct 2021 08:37:35,393 DEBUG: Protocol import complete
07 Oct 2021 08:37:35,395 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-9180:Monitoring+of+histidine+methylated+Rpl3p'
07 Oct 2021 08:37:35,395 DEBUG: Experiment/Run group import complete
07 Oct 2021 08:37:35,405 DEBUG: Protocol action set import complete
07 Oct 2021 08:37:35,421 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9180:TargetedMS.ImportSkyZip'
07 Oct 2021 08:37:35,433 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9180:35a0f786-092f-103a-b54f-fea6ddf5779e'
07 Oct 2021 08:37:35,438 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9180:35a0f6f5-092f-103a-b54f-fea6ddf5779e'
07 Oct 2021 08:37:35,439 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9180:TargetedMS.ImportSkyZip.Core'
07 Oct 2021 08:37:35,442 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9180:TargetedMS.ImportSkyZip.Output'
07 Oct 2021 08:37:35,443 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9180:35a0f78c-092f-103a-b54f-fea6ddf5779e'
07 Oct 2021 08:37:35,445 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20New%20South%20Wales%20Wilkins%20Lab%20-%20Hpm1%20histidine%20methylation%20of%20Rpl3_ab8f7224-09b0-103a-b54f-fea6ddf5779e/_temp__2021-10-07_08-37-26/export/xar/experiments_and_runs.xar.exploded/Run118881/Rpl3_LysC_071021/Rpl3_LysC.skyd into the system
07 Oct 2021 08:37:35,445 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20New%20South%20Wales%20Wilkins%20Lab%20-%20Hpm1%20histidine%20methylation%20of%20Rpl3_ab8f7224-09b0-103a-b54f-fea6ddf5779e/_temp__2021-10-07_08-37-26/export/xar/experiments_and_runs.xar.exploded/Run118881/Rpl3_LysC_071021/Rpl3_LysC.skyd into the system
07 Oct 2021 08:37:35,445 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20New%20South%20Wales%20Wilkins%20Lab%20-%20Hpm1%20histidine%20methylation%20of%20Rpl3_ab8f7224-09b0-103a-b54f-fea6ddf5779e/_temp__2021-10-07_08-37-26/export/xar/experiments_and_runs.xar.exploded/Run118881/Rpl3_LysC_071021.sky.zip into the system
07 Oct 2021 08:37:35,447 INFO : Starting import from Rpl3_LysC_071021.sky.zip
07 Oct 2021 08:37:35,452 INFO : Starting to import Skyline document from Rpl3_LysC_071021.sky.zip
07 Oct 2021 08:37:35,452 INFO : Expanding Rpl3_LysC.skyd
07 Oct 2021 08:37:35,455 INFO : Expanding Rpl3_LysC.sky.view
07 Oct 2021 08:37:35,456 INFO : Expanding Rpl3_LysC.sky
07 Oct 2021 08:37:35,465 INFO : 3% Done
07 Oct 2021 08:37:35,470 DEBUG: Starting to load chromatogram headers
07 Oct 2021 08:37:35,471 DEBUG: Done loading chromatogram headers
07 Oct 2021 08:37:35,509 INFO : Inserting RL3
07 Oct 2021 08:37:35,513 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M - 867.5271, THRGLRK, 1
07 Oct 2021 08:37:35,513 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M - 867.5271, THRGLRK, 1
07 Oct 2021 08:37:35,513 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M+1 - 868.5298, THRGLRK, 1
07 Oct 2021 08:37:35,513 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M+1 - 868.5298, THRGLRK, 1
07 Oct 2021 08:37:35,513 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M+2 - 869.5322, THRGLRK, 1
07 Oct 2021 08:37:35,513 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M+2 - 869.5322, THRGLRK, 1
07 Oct 2021 08:37:35,514 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b2 - 239.1139+, THRGLRK, 1
07 Oct 2021 08:37:35,514 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b2 - 239.1139+, THRGLRK, 1
07 Oct 2021 08:37:35,514 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b3 - 395.2150+, THRGLRK, 1
07 Oct 2021 08:37:35,514 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b3 - 395.2150+, THRGLRK, 1
07 Oct 2021 08:37:35,514 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b4 - 452.2364+, THRGLRK, 1
07 Oct 2021 08:37:35,514 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b4 - 452.2364+, THRGLRK, 1
07 Oct 2021 08:37:35,515 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b5 - 565.3205+, THRGLRK, 1
07 Oct 2021 08:37:35,515 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b5 - 565.3205+, THRGLRK, 1
07 Oct 2021 08:37:35,515 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b6 - 721.4216+, THRGLRK, 1
07 Oct 2021 08:37:35,515 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b6 - 721.4216+, THRGLRK, 1
07 Oct 2021 08:37:35,515 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition y6 - 766.4795+, THRGLRK, 1
07 Oct 2021 08:37:35,515 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition y6 - 766.4795+, THRGLRK, 1
07 Oct 2021 08:37:35,515 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition y5 - 629.4206+, THRGLRK, 1
07 Oct 2021 08:37:35,515 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition y5 - 629.4206+, THRGLRK, 1
07 Oct 2021 08:37:35,515 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition y4 - 473.3194+, THRGLRK, 1
07 Oct 2021 08:37:35,516 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition y4 - 473.3194+, THRGLRK, 1
07 Oct 2021 08:37:35,516 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition y3 - 416.2980+, THRGLRK, 1
07 Oct 2021 08:37:35,516 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition y3 - 416.2980+, THRGLRK, 1
07 Oct 2021 08:37:35,517 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M - 434.2672, THRGLRK, 2
07 Oct 2021 08:37:35,517 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M - 434.2672, THRGLRK, 2
07 Oct 2021 08:37:35,517 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M+1 - 434.7685, THRGLRK, 2
07 Oct 2021 08:37:35,517 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M+1 - 434.7685, THRGLRK, 2
07 Oct 2021 08:37:35,517 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M+2 - 435.2698, THRGLRK, 2
07 Oct 2021 08:37:35,518 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M+2 - 435.2698, THRGLRK, 2
07 Oct 2021 08:37:35,518 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b2 - 239.1139+, THRGLRK, 2
07 Oct 2021 08:37:35,518 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b2 - 239.1139+, THRGLRK, 2
07 Oct 2021 08:37:35,518 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b3 - 395.2150+, THRGLRK, 2
07 Oct 2021 08:37:35,518 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b3 - 395.2150+, THRGLRK, 2
07 Oct 2021 08:37:35,518 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b4 - 452.2364+, THRGLRK, 2
07 Oct 2021 08:37:35,518 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b4 - 452.2364+, THRGLRK, 2
07 Oct 2021 08:37:35,519 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b5 - 565.3205+, THRGLRK, 2
07 Oct 2021 08:37:35,519 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b5 - 565.3205+, THRGLRK, 2
07 Oct 2021 08:37:35,519 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b6 - 721.4216+, THRGLRK, 2
07 Oct 2021 08:37:35,519 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b6 - 721.4216+, THRGLRK, 2
07 Oct 2021 08:37:35,519 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b2 - 120.0606++, THRGLRK, 2
07 Oct 2021 08:37:35,519 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b2 - 120.0606++, THRGLRK, 2
07 Oct 2021 08:37:35,520 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b3 - 198.1111++, THRGLRK, 2
07 Oct 2021 08:37:35,520 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b3 - 198.1111++, THRGLRK, 2
07 Oct 2021 08:37:35,520 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b4 - 226.6219++, THRGLRK, 2
07 Oct 2021 08:37:35,520 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b4 - 226.6219++, THRGLRK, 2
07 Oct 2021 08:37:35,520 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b5 - 283.1639++, THRGLRK, 2
07 Oct 2021 08:37:35,520 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b5 - 283.1639++, THRGLRK, 2
07 Oct 2021 08:37:35,520 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b6 - 361.2144++, THRGLRK, 2
07 Oct 2021 08:37:35,521 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b6 - 361.2144++, THRGLRK, 2
07 Oct 2021 08:37:35,521 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition y6 - 766.4795+, THRGLRK, 2
07 Oct 2021 08:37:35,521 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition y6 - 766.4795+, THRGLRK, 2
07 Oct 2021 08:37:35,521 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition y6 - 383.7434++, THRGLRK, 2
07 Oct 2021 08:37:35,522 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition y6 - 383.7434++, THRGLRK, 2
07 Oct 2021 08:37:35,523 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M - 289.8472, THRGLRK, 3
07 Oct 2021 08:37:35,523 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M - 289.8472, THRGLRK, 3
07 Oct 2021 08:37:35,523 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M+2 - 290.5156, THRGLRK, 3
07 Oct 2021 08:37:35,524 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M+2 - 290.5156, THRGLRK, 3
07 Oct 2021 08:37:35,524 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b2 - 239.1139+, THRGLRK, 3
07 Oct 2021 08:37:35,524 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b2 - 239.1139+, THRGLRK, 3
07 Oct 2021 08:37:35,524 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b3 - 395.2150+, THRGLRK, 3
07 Oct 2021 08:37:35,524 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b3 - 395.2150+, THRGLRK, 3
07 Oct 2021 08:37:35,524 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b4 - 452.2364+, THRGLRK, 3
07 Oct 2021 08:37:35,525 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b4 - 452.2364+, THRGLRK, 3
07 Oct 2021 08:37:35,525 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b5 - 565.3205+, THRGLRK, 3
07 Oct 2021 08:37:35,525 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b5 - 565.3205+, THRGLRK, 3
07 Oct 2021 08:37:35,525 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b6 - 721.4216+, THRGLRK, 3
07 Oct 2021 08:37:35,525 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b6 - 721.4216+, THRGLRK, 3
07 Oct 2021 08:37:35,525 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b2 - 120.0606++, THRGLRK, 3
07 Oct 2021 08:37:35,526 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b2 - 120.0606++, THRGLRK, 3
07 Oct 2021 08:37:35,526 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b3 - 198.1111++, THRGLRK, 3
07 Oct 2021 08:37:35,526 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b3 - 198.1111++, THRGLRK, 3
07 Oct 2021 08:37:35,526 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b4 - 226.6219++, THRGLRK, 3
07 Oct 2021 08:37:35,526 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b4 - 226.6219++, THRGLRK, 3
07 Oct 2021 08:37:35,526 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b5 - 283.1639++, THRGLRK, 3
07 Oct 2021 08:37:35,526 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b5 - 283.1639++, THRGLRK, 3
07 Oct 2021 08:37:35,527 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b6 - 361.2144++, THRGLRK, 3
07 Oct 2021 08:37:35,527 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b6 - 361.2144++, THRGLRK, 3
07 Oct 2021 08:37:35,527 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition y6 - 766.4795+, THRGLRK, 3
07 Oct 2021 08:37:35,527 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition y6 - 766.4795+, THRGLRK, 3
07 Oct 2021 08:37:35,528 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition y6 - 383.7434++, THRGLRK, 3
07 Oct 2021 08:37:35,528 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition y6 - 383.7434++, THRGLRK, 3
07 Oct 2021 08:37:35,529 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M - 217.6372, THRGLRK, 4
07 Oct 2021 08:37:35,529 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M - 217.6372, THRGLRK, 4
07 Oct 2021 08:37:35,530 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M+1 - 217.8879, THRGLRK, 4
07 Oct 2021 08:37:35,530 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M+1 - 217.8879, THRGLRK, 4
07 Oct 2021 08:37:35,530 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M+2 - 218.1385, THRGLRK, 4
07 Oct 2021 08:37:35,530 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M+2 - 218.1385, THRGLRK, 4
07 Oct 2021 08:37:35,530 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b2 - 239.1139+, THRGLRK, 4
07 Oct 2021 08:37:35,530 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b2 - 239.1139+, THRGLRK, 4
07 Oct 2021 08:37:35,531 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b3 - 395.2150+, THRGLRK, 4
07 Oct 2021 08:37:35,531 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b3 - 395.2150+, THRGLRK, 4
07 Oct 2021 08:37:35,531 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b4 - 452.2364+, THRGLRK, 4
07 Oct 2021 08:37:35,531 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b4 - 452.2364+, THRGLRK, 4
07 Oct 2021 08:37:35,531 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b5 - 565.3205+, THRGLRK, 4
07 Oct 2021 08:37:35,531 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b5 - 565.3205+, THRGLRK, 4
07 Oct 2021 08:37:35,532 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b6 - 721.4216+, THRGLRK, 4
07 Oct 2021 08:37:35,532 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b6 - 721.4216+, THRGLRK, 4
07 Oct 2021 08:37:35,532 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b2 - 120.0606++, THRGLRK, 4
07 Oct 2021 08:37:35,532 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b2 - 120.0606++, THRGLRK, 4
07 Oct 2021 08:37:35,532 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b3 - 198.1111++, THRGLRK, 4
07 Oct 2021 08:37:35,532 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b3 - 198.1111++, THRGLRK, 4
07 Oct 2021 08:37:35,532 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b4 - 226.6219++, THRGLRK, 4
07 Oct 2021 08:37:35,533 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b4 - 226.6219++, THRGLRK, 4
07 Oct 2021 08:37:35,533 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b5 - 283.1639++, THRGLRK, 4
07 Oct 2021 08:37:35,533 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b5 - 283.1639++, THRGLRK, 4
07 Oct 2021 08:37:35,533 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b6 - 361.2144++, THRGLRK, 4
07 Oct 2021 08:37:35,533 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b6 - 361.2144++, THRGLRK, 4
07 Oct 2021 08:37:35,533 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition y6 - 766.4795+, THRGLRK, 4
07 Oct 2021 08:37:35,533 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition y6 - 766.4795+, THRGLRK, 4
07 Oct 2021 08:37:35,534 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition y6 - 383.7434++, THRGLRK, 4
07 Oct 2021 08:37:35,534 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition y6 - 383.7434++, THRGLRK, 4
07 Oct 2021 08:37:35,538 INFO : 51% Done
07 Oct 2021 08:37:35,623 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M - 881.5428, TH[+14.0]RGLRK, 1
07 Oct 2021 08:37:35,623 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M - 881.5428, TH[+14.0]RGLRK, 1
07 Oct 2021 08:37:35,623 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M+1 - 882.5454, TH[+14.0]RGLRK, 1
07 Oct 2021 08:37:35,623 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M+1 - 882.5454, TH[+14.0]RGLRK, 1
07 Oct 2021 08:37:35,623 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M+2 - 883.5479, TH[+14.0]RGLRK, 1
07 Oct 2021 08:37:35,623 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M+2 - 883.5479, TH[+14.0]RGLRK, 1
07 Oct 2021 08:37:35,623 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b3 - 409.2306+, TH[+14.0]RGLRK, 1
07 Oct 2021 08:37:35,624 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b3 - 409.2306+, TH[+14.0]RGLRK, 1
07 Oct 2021 08:37:35,624 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b4 - 466.2521+, TH[+14.0]RGLRK, 1
07 Oct 2021 08:37:35,624 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b4 - 466.2521+, TH[+14.0]RGLRK, 1
07 Oct 2021 08:37:35,624 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b5 - 579.3362+, TH[+14.0]RGLRK, 1
07 Oct 2021 08:37:35,624 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition b5 - 579.3362+, TH[+14.0]RGLRK, 1
07 Oct 2021 08:37:35,624 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition y6 - 780.4951+, TH[+14.0]RGLRK, 1
07 Oct 2021 08:37:35,624 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition y6 - 780.4951+, TH[+14.0]RGLRK, 1
07 Oct 2021 08:37:35,624 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition y5 - 629.4206+, TH[+14.0]RGLRK, 1
07 Oct 2021 08:37:35,624 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition y5 - 629.4206+, TH[+14.0]RGLRK, 1
07 Oct 2021 08:37:35,624 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition y4 - 473.3194+, TH[+14.0]RGLRK, 1
07 Oct 2021 08:37:35,625 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition y4 - 473.3194+, TH[+14.0]RGLRK, 1
07 Oct 2021 08:37:35,625 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition y3 - 416.2980+, TH[+14.0]RGLRK, 1
07 Oct 2021 08:37:35,625 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition y3 - 416.2980+, TH[+14.0]RGLRK, 1
07 Oct 2021 08:37:35,626 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M - 441.2750, TH[+14.0]RGLRK, 2
07 Oct 2021 08:37:35,626 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M - 441.2750, TH[+14.0]RGLRK, 2
07 Oct 2021 08:37:35,626 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M+1 - 441.7764, TH[+14.0]RGLRK, 2
07 Oct 2021 08:37:35,626 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M+1 - 441.7764, TH[+14.0]RGLRK, 2
07 Oct 2021 08:37:35,626 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M+2 - 442.2776, TH[+14.0]RGLRK, 2
07 Oct 2021 08:37:35,626 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M+2 - 442.2776, TH[+14.0]RGLRK, 2
07 Oct 2021 08:37:35,629 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M - 294.5191, TH[+14.0]RGLRK, 3
07 Oct 2021 08:37:35,629 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M - 294.5191, TH[+14.0]RGLRK, 3
07 Oct 2021 08:37:35,629 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M+1 - 294.8533, TH[+14.0]RGLRK, 3
07 Oct 2021 08:37:35,629 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M+1 - 294.8533, TH[+14.0]RGLRK, 3
07 Oct 2021 08:37:35,629 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M+2 - 295.1875, TH[+14.0]RGLRK, 3
07 Oct 2021 08:37:35,629 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M+2 - 295.1875, TH[+14.0]RGLRK, 3
07 Oct 2021 08:37:35,632 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_WT_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M+2 - 221.6424, TH[+14.0]RGLRK, 4
07 Oct 2021 08:37:35,632 WARN : Unable to find a matching chromatogram for file path C:\Users\Lab\Downloads\12022021_Rpl3-Me_Hpm1_B2_LysC_5uL_targeted.raw. SKYD file may be out of sync with primary Skyline document. Transition M+2 - 221.6424, TH[+14.0]RGLRK, 4
07 Oct 2021 08:37:35,636 INFO : 98% Done
07 Oct 2021 08:37:35,711 DEBUG: Total peptides inserted: 2
07 Oct 2021 08:37:35,711 INFO : Done parsing Skyline document.
07 Oct 2021 08:37:35,712 INFO : Creating and populating temp tables for Proportion values
07 Oct 2021 08:37:35,723 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
07 Oct 2021 08:37:35,724 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
07 Oct 2021 08:37:35,724 INFO : Cleaning up temp tables
07 Oct 2021 08:37:35,955 INFO : Completed import of Skyline document from Rpl3_LysC_071021.sky.zip
07 Oct 2021 08:37:35,958 INFO : 100% Done
07 Oct 2021 08:37:35,961 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20New%20South%20Wales%20Wilkins%20Lab%20-%20Hpm1%20histidine%20methylation%20of%20Rpl3_ab8f7224-09b0-103a-b54f-fea6ddf5779e/_temp__2021-10-07_08-37-26/export/xar/experiments_and_runs.xar.exploded/Run118881/Rpl3_LysC_071021.sky.zip into the system
07 Oct 2021 08:37:35,967 INFO : Done importing xar
07 Oct 2021 08:37:35,969 INFO : Loading pages and webpart properties
07 Oct 2021 08:37:36,037 INFO : Done importing pages and webpart properties
07 Oct 2021 08:37:36,040 INFO :
07 Oct 2021 08:37:36,040 INFO : Experiment import completed successfully.
07 Oct 2021 08:37:36,040 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
07 Oct 2021 08:37:36,065 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
07 Oct 2021 08:37:36,065 INFO :
07 Oct 2021 08:37:36,066 INFO : Finishing up experiment copy.
07 Oct 2021 08:37:36,067 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
07 Oct 2021 08:37:36,068 INFO : Assigning a ProteomeXchange ID.
07 Oct 2021 08:37:36,716 INFO : Assigning a DOI.
07 Oct 2021 08:37:39,438 INFO : Assigned DOI: 10.6069/pey5-p907
07 Oct 2021 08:37:39,442 INFO : Updating access URL to point to the new copy of the data.
07 Oct 2021 08:37:39,447 INFO : Setting the 'copied' timestamp and journalExperimentId on the JournalExperiment table.
07 Oct 2021 08:37:39,448 INFO : Removing copy permissions given to journal.
07 Oct 2021 08:37:39,456 INFO : Adding read permissions to all users that are folder admins in the source container.
07 Oct 2021 08:37:39,464 INFO : Setting the TargetedMS folder type to 'Experimental Data'
07 Oct 2021 08:37:39,470 INFO : Updating the 'Raw Data' tab configuration
07 Oct 2021 08:37:39,473 INFO : Updating dataFileUrls for run Rpl3_LysC_071021.sky.zip; targetedms run ID 121768
07 Oct 2021 08:37:39,473 INFO : Updating dataFileUrl...
07 Oct 2021 08:37:39,473 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20New%20South%20Wales%20Wilkins%20Lab%20-%20Hpm1%20histidine%20methylation%20of%20Rpl3_ab8f7224-09b0-103a-b54f-fea6ddf5779e/_temp__2021-10-07_08-37-26/export/xar/experiments_and_runs.xar.exploded/Run118881/Rpl3_LysC_071021/Rpl3_LysC.skyd
07 Oct 2021 08:37:39,473 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/U%20of%20New%20South%20Wales%20Wilkins%20Lab%20-%20Hpm1%20histidine%20methylation%20of%20Rpl3/@files/Rpl3_LysC_071021/Rpl3_LysC.skyd
07 Oct 2021 08:37:39,475 INFO : Updating dataFileUrl...
07 Oct 2021 08:37:39,476 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20New%20South%20Wales%20Wilkins%20Lab%20-%20Hpm1%20histidine%20methylation%20of%20Rpl3_ab8f7224-09b0-103a-b54f-fea6ddf5779e/_temp__2021-10-07_08-37-26/export/xar/experiments_and_runs.xar.exploded/Run118881/Rpl3_LysC_071021.sky.zip
07 Oct 2021 08:37:39,476 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/U%20of%20New%20South%20Wales%20Wilkins%20Lab%20-%20Hpm1%20histidine%20methylation%20of%20Rpl3/@files/Rpl3_LysC_071021.sky.zip
07 Oct 2021 08:37:39,478 INFO : Making folder public.
07 Oct 2021 08:37:39,485 INFO : Hiding the Data Pipeline tab.
07 Oct 2021 08:37:39,596 INFO : Emailing submitter.
07 Oct 2021 08:37:39,757 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'