27 Jul 2021 21:35:01,747 INFO : Copying experiment "Profiling Tryptophan Catabolites of Human Gut Microbiota and Acute-Phase Protein Levels in Neonatal Dried Blood Specimens" from folder /U of Masaryk - RECETOX/Aust Benesova et al. under review Supplementary to /Panorama Public/2021/U of Masaryk RECETOX - Aust Benesova et al.

27 Jul 2021 21:35:01,747 INFO : =======================================

27 Jul 2021 21:35:01,796 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'

27 Jul 2021 21:35:01,796 INFO : 

27 Jul 2021 21:35:01,796 INFO : Exporting experiment.

27 Jul 2021 21:37:40,382 INFO : 

27 Jul 2021 21:37:40,382 INFO : Experiment export completed successfully.

27 Jul 2021 21:37:40,382 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'

27 Jul 2021 21:37:40,418 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'

27 Jul 2021 21:37:40,418 INFO : 

27 Jul 2021 21:37:40,418 INFO : Importing experiment.

27 Jul 2021 21:37:40,452 INFO : Loading folder properties (folder type, settings and active modules)

27 Jul 2021 21:37:40,512 INFO : Done importing folder properties (folder type, settings and active modules)

27 Jul 2021 21:37:40,515 INFO : Loading etl definitions

27 Jul 2021 21:37:40,519 INFO : Loading wikis

27 Jul 2021 21:37:40,521 INFO : 0 wikis imported

27 Jul 2021 21:37:40,521 INFO : Done importing wikis

27 Jul 2021 21:37:40,521 INFO : Starting to copy files

27 Jul 2021 21:37:54,508 INFO : Copied 652 files

27 Jul 2021 21:37:54,508 INFO : Ensuring exp.data rows exist for imported files

27 Jul 2021 21:37:56,838 INFO : Starting Sample Type and Data Class import

27 Jul 2021 21:37:56,839 INFO : No types XAR file to process.

27 Jul 2021 21:37:56,839 INFO : Finished importing Sample Types and Data Classes

27 Jul 2021 21:37:56,841 INFO : Loading xar

27 Jul 2021 21:37:58,025 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8899:TargetedMS.ImportSkyZip'

27 Jul 2021 21:37:58,028 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8899:TargetedMS.ImportSkyZip.Core'

27 Jul 2021 21:37:58,030 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8899:TargetedMS.ImportSkyZip.Output'

27 Jul 2021 21:37:58,030 DEBUG: Protocol import complete

27 Jul 2021 21:37:58,032 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-8899:Profiling+Tryptophan+Catabolites+of+Human+Gut+Microbiota+and+Acute-Phase+Protein+Levels+in+Neonatal+Dried+Blood+Specimens'

27 Jul 2021 21:37:58,032 DEBUG: Experiment/Run group import complete

27 Jul 2021 21:37:58,042 DEBUG: Protocol action set import complete

27 Jul 2021 21:37:58,054 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8899:TargetedMS.ImportSkyZip'

27 Jul 2021 21:37:58,065 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8899:0c8a77b8-cf92-1039-b76f-fea6ddf5767a'

27 Jul 2021 21:37:58,069 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8899:0c8a77c7-cf92-1039-b76f-fea6ddf5767a'

27 Jul 2021 21:37:58,069 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8899:TargetedMS.ImportSkyZip.Core'

27 Jul 2021 21:37:58,072 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8899:TargetedMS.ImportSkyZip.Output'

27 Jul 2021 21:37:58,074 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8899:0c8a77f0-cf92-1039-b76f-fea6ddf5767a'

27 Jul 2021 21:37:58,080 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8899:TargetedMS.ImportSkyZip'

27 Jul 2021 21:37:58,084 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8899:751d01da-cfa5-1039-b76f-fea6ddf5767a'

27 Jul 2021 21:37:58,087 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8899:751d0204-cfa5-1039-b76f-fea6ddf5767a'

27 Jul 2021 21:37:58,087 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8899:TargetedMS.ImportSkyZip.Core'

27 Jul 2021 21:37:58,089 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8899:TargetedMS.ImportSkyZip.Output'

27 Jul 2021 21:37:58,089 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8899:751d02ab-cfa5-1039-b76f-fea6ddf5767a'

27 Jul 2021 21:37:58,095 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8899:TargetedMS.ImportSkyZip'

27 Jul 2021 21:37:58,099 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8899:f2bf7993-cfa8-1039-b76f-fea6ddf5767a'

27 Jul 2021 21:37:58,102 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8899:f2bf79c6-cfa8-1039-b76f-fea6ddf5767a'

27 Jul 2021 21:37:58,102 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8899:TargetedMS.ImportSkyZip.Core'

27 Jul 2021 21:37:58,104 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8899:TargetedMS.ImportSkyZip.Output'

27 Jul 2021 21:37:58,104 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8899:f2bf79de-cfa8-1039-b76f-fea6ddf5767a'

27 Jul 2021 21:37:58,110 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8899:TargetedMS.ImportSkyZip'

27 Jul 2021 21:37:58,114 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8899:925ffd4e-cfaa-1039-b76f-fea6ddf5767a'

27 Jul 2021 21:37:58,117 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8899:925ffd5d-cfaa-1039-b76f-fea6ddf5767a'

27 Jul 2021 21:37:58,117 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8899:TargetedMS.ImportSkyZip.Core'

27 Jul 2021 21:37:58,118 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8899:TargetedMS.ImportSkyZip.Output'

27 Jul 2021 21:37:58,119 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8899:925ffd87-cfaa-1039-b76f-fea6ddf5767a'

27 Jul 2021 21:37:58,124 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8899:TargetedMS.ImportSkyZip'

27 Jul 2021 21:37:58,128 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8899:caa22804-d0f1-1039-99d4-fea6ddf51ea2'

27 Jul 2021 21:37:58,131 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8899:caa227f5-d0f1-1039-99d4-fea6ddf51ea2'

27 Jul 2021 21:37:58,131 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8899:TargetedMS.ImportSkyZip.Core'

27 Jul 2021 21:37:58,133 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8899:TargetedMS.ImportSkyZip.Output'

27 Jul 2021 21:37:58,133 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8899:caa22813-d0f1-1039-99d4-fea6ddf51ea2'

27 Jul 2021 21:37:58,135 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Masaryk%20RECETOX%20-%20Aust%20Benesova%20et%20al._b81744be-d18a-1039-99d4-fea6ddf51ea2/_temp__2021-07-27_21-35/export/xar/experiments_and_runs.xar.exploded/Run114358/APP%20quantification%20in%20DBS%20cohort%20samples.sky.zip into the system

27 Jul 2021 21:37:58,136 INFO : Starting import from APP quantification in DBS cohort samples.sky.zip

27 Jul 2021 21:37:58,139 INFO : Starting to import Skyline document from APP quantification in DBS cohort samples.sky.zip

27 Jul 2021 21:37:58,146 INFO : Expanding APP quantification in DBS cohort samples.skyd

27 Jul 2021 21:37:58,286 INFO : Expanding APP quantification in DBS cohort samples.sky.view

27 Jul 2021 21:37:58,287 INFO : Expanding APP quantification in DBS cohort samples.sky

27 Jul 2021 21:37:58,307 INFO : 2% Done

27 Jul 2021 21:37:58,415 DEBUG: Starting to load chromatogram headers

27 Jul 2021 21:37:58,420 DEBUG: Done loading chromatogram headers

27 Jul 2021 21:37:58,555 INFO : Inserting P01009

27 Jul 2021 21:37:58,570 INFO : 11% Done

27 Jul 2021 21:37:58,809 DEBUG: Total peptides inserted: 1

27 Jul 2021 21:37:58,810 INFO : Inserting P02741

27 Jul 2021 21:37:58,821 INFO : 19% Done

27 Jul 2021 21:37:59,045 DEBUG: Total peptides inserted: 1

27 Jul 2021 21:37:59,045 INFO : Inserting P02763

27 Jul 2021 21:37:59,060 INFO : 25% Done

27 Jul 2021 21:37:59,284 DEBUG: Total peptides inserted: 1

27 Jul 2021 21:37:59,285 INFO : Inserting P0DJI8

27 Jul 2021 21:37:59,305 INFO : 35% Done

27 Jul 2021 21:37:59,575 DEBUG: Total peptides inserted: 1

27 Jul 2021 21:37:59,575 INFO : Inserting P0DJI9

27 Jul 2021 21:37:59,586 INFO : 43% Done

27 Jul 2021 21:37:59,821 INFO : 53% Done

27 Jul 2021 21:38:00,079 INFO : 61% Done

27 Jul 2021 21:38:00,290 DEBUG: Total peptides inserted: 3

27 Jul 2021 21:38:00,290 INFO : Inserting P0DJI8/9

27 Jul 2021 21:38:00,301 INFO : 69% Done

27 Jul 2021 21:38:00,512 DEBUG: Total peptides inserted: 1

27 Jul 2021 21:38:00,512 INFO : Inserting P19652

27 Jul 2021 21:38:00,524 INFO : 75% Done

27 Jul 2021 21:38:00,742 INFO : 83% Done

27 Jul 2021 21:38:00,945 DEBUG: Total peptides inserted: 2

27 Jul 2021 21:38:00,945 INFO : Inserting P35542

27 Jul 2021 21:38:00,956 INFO : 91% Done

27 Jul 2021 21:38:01,175 INFO : 98% Done

27 Jul 2021 21:38:01,384 DEBUG: Total peptides inserted: 2

27 Jul 2021 21:38:01,385 INFO : Done parsing Skyline document.

27 Jul 2021 21:38:01,386 INFO : Creating and populating temp tables for Proportion values

27 Jul 2021 21:38:01,415 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

27 Jul 2021 21:38:01,540 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

27 Jul 2021 21:38:01,584 INFO : Cleaning up temp tables

27 Jul 2021 21:38:01,858 INFO : Completed import of Skyline document from APP quantification in DBS cohort samples.sky.zip

27 Jul 2021 21:38:01,861 INFO : 100% Done

27 Jul 2021 21:38:01,866 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Masaryk%20RECETOX%20-%20Aust%20Benesova%20et%20al._b81744be-d18a-1039-99d4-fea6ddf51ea2/_temp__2021-07-27_21-35/export/xar/experiments_and_runs.xar.exploded/Run114358/APP%20quantification%20in%20DBS%20cohort%20samples.sky.zip into the system

27 Jul 2021 21:38:01,866 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Masaryk%20RECETOX%20-%20Aust%20Benesova%20et%20al._b81744be-d18a-1039-99d4-fea6ddf51ea2/_temp__2021-07-27_21-35/export/xar/experiments_and_runs.xar.exploded/Run114358/APP%20quantification%20in%20DBS%20cohort%20samples/APP%20quantification%20in%20DBS%20cohort%20samples.skyd into the system

27 Jul 2021 21:38:01,867 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Masaryk%20RECETOX%20-%20Aust%20Benesova%20et%20al._b81744be-d18a-1039-99d4-fea6ddf51ea2/_temp__2021-07-27_21-35/export/xar/experiments_and_runs.xar.exploded/Run114358/APP%20quantification%20in%20DBS%20cohort%20samples/APP%20quantification%20in%20DBS%20cohort%20samples.skyd into the system

27 Jul 2021 21:38:01,867 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Masaryk%20RECETOX%20-%20Aust%20Benesova%20et%20al._b81744be-d18a-1039-99d4-fea6ddf51ea2/_temp__2021-07-27_21-35/export/xar/experiments_and_runs.xar.exploded/Run114362/TRP%20metabolites%20quantification%20in%20DBS%20cohort%20samples,%20measurement%201.sky.zip into the system

27 Jul 2021 21:38:01,868 INFO : Starting import from TRP metabolites quantification in DBS cohort samples, measurement 1.sky.zip

27 Jul 2021 21:38:01,870 INFO : Starting to import Skyline document from TRP metabolites quantification in DBS cohort samples, measurement 1.sky.zip

27 Jul 2021 21:38:01,876 INFO : Expanding TRP metabolites quantification in DBS cohort samples, measurement 1.skyd

27 Jul 2021 21:38:02,021 INFO : Expanding TRP metabolites quantification in DBS cohort samples, measurement 1.sky.view

27 Jul 2021 21:38:02,021 INFO : Expanding TRP metabolites quantification in DBS cohort samples, measurement 1.sky

27 Jul 2021 21:38:02,035 INFO : 3% Done

27 Jul 2021 21:38:02,149 DEBUG: Starting to load chromatogram headers

27 Jul 2021 21:38:02,154 DEBUG: Done loading chromatogram headers

27 Jul 2021 21:38:02,277 INFO : Inserting ANTHRANILATE

27 Jul 2021 21:38:02,284 INFO : 9% Done

27 Jul 2021 21:38:02,340 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:02,340 INFO : Inserting ANTHRANILATE[13C6]

27 Jul 2021 21:38:02,346 INFO : 15% Done

27 Jul 2021 21:38:02,400 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:02,400 INFO : Inserting INDOLE-3-ACETAMIDE

27 Jul 2021 21:38:02,406 INFO : 20% Done

27 Jul 2021 21:38:02,461 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:02,461 INFO : Inserting INDOLE-3-ACETAMIDE[2H5][15N]

27 Jul 2021 21:38:02,471 INFO : 25% Done

27 Jul 2021 21:38:02,530 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:02,530 INFO : Inserting INDOLE-3-ACETATE

27 Jul 2021 21:38:02,535 INFO : 29% Done

27 Jul 2021 21:38:02,579 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:02,579 INFO : Inserting INDOLE-3-ACETATE[13C6]

27 Jul 2021 21:38:02,584 INFO : 33% Done

27 Jul 2021 21:38:02,628 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:02,628 INFO : Inserting INDOLE-3-ALDEHYDE

27 Jul 2021 21:38:02,638 INFO : 43% Done

27 Jul 2021 21:38:02,728 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:02,728 INFO : Inserting INDOLE-3-BUTYRIC ACID

27 Jul 2021 21:38:02,736 INFO : 48% Done

27 Jul 2021 21:38:02,792 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:02,792 INFO : Inserting INDOLE-3-LACTIC ACID

27 Jul 2021 21:38:02,800 INFO : 56% Done

27 Jul 2021 21:38:02,865 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:02,865 INFO : Inserting INDOLE-3-PROPIONIC ACID

27 Jul 2021 21:38:02,872 INFO : 61% Done

27 Jul 2021 21:38:02,928 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:02,928 INFO : Inserting L-KYNURENINE

27 Jul 2021 21:38:02,934 INFO : 67% Done

27 Jul 2021 21:38:02,989 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:02,989 INFO : Inserting L-KYNURENINE[2H5]

27 Jul 2021 21:38:02,997 INFO : 72% Done

27 Jul 2021 21:38:03,055 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:03,055 INFO : Inserting L-TRYPTOPHAN

27 Jul 2021 21:38:03,062 INFO : 77% Done

27 Jul 2021 21:38:03,118 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:03,118 INFO : Inserting L-TRYPTOPHAN[11C13][2N15]

27 Jul 2021 21:38:03,128 INFO : 86% Done

27 Jul 2021 21:38:03,210 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:03,210 INFO : Inserting METHYL INDOLE-3-ACETATE

27 Jul 2021 21:38:03,218 INFO : 91% Done

27 Jul 2021 21:38:03,275 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:03,275 INFO : Inserting N-ACETYLTRYPTOPHAN

27 Jul 2021 21:38:03,283 INFO : 98% Done

27 Jul 2021 21:38:03,349 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:03,350 INFO : Done parsing Skyline document.

27 Jul 2021 21:38:03,351 INFO : Creating and populating temp tables for Proportion values

27 Jul 2021 21:38:03,370 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

27 Jul 2021 21:38:03,461 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

27 Jul 2021 21:38:03,531 INFO : Cleaning up temp tables

27 Jul 2021 21:38:03,832 INFO : Completed import of Skyline document from TRP metabolites quantification in DBS cohort samples, measurement 1.sky.zip

27 Jul 2021 21:38:03,835 INFO : 100% Done

27 Jul 2021 21:38:03,838 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Masaryk%20RECETOX%20-%20Aust%20Benesova%20et%20al._b81744be-d18a-1039-99d4-fea6ddf51ea2/_temp__2021-07-27_21-35/export/xar/experiments_and_runs.xar.exploded/Run114362/TRP%20metabolites%20quantification%20in%20DBS%20cohort%20samples,%20measurement%201.sky.zip into the system

27 Jul 2021 21:38:03,838 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Masaryk%20RECETOX%20-%20Aust%20Benesova%20et%20al._b81744be-d18a-1039-99d4-fea6ddf51ea2/_temp__2021-07-27_21-35/export/xar/experiments_and_runs.xar.exploded/Run114362/TRP%20metabolites%20quantification%20in%20DBS%20cohort%20samples,%20measurement%201/TRP%20metabolites%20quantification%20in%20DBS%20cohort%20samples,%20measurement%201.skyd into the system

27 Jul 2021 21:38:03,838 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Masaryk%20RECETOX%20-%20Aust%20Benesova%20et%20al._b81744be-d18a-1039-99d4-fea6ddf51ea2/_temp__2021-07-27_21-35/export/xar/experiments_and_runs.xar.exploded/Run114362/TRP%20metabolites%20quantification%20in%20DBS%20cohort%20samples,%20measurement%201/TRP%20metabolites%20quantification%20in%20DBS%20cohort%20samples,%20measurement%201.skyd into the system

27 Jul 2021 21:38:03,838 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Masaryk%20RECETOX%20-%20Aust%20Benesova%20et%20al._b81744be-d18a-1039-99d4-fea6ddf51ea2/_temp__2021-07-27_21-35/export/xar/experiments_and_runs.xar.exploded/Run114364/TRP%20metabolites%20quantification%20in%20DBS%20cohort%20samples,%20measurement%202.sky.zip into the system

27 Jul 2021 21:38:03,839 INFO : Starting import from TRP metabolites quantification in DBS cohort samples, measurement 2.sky.zip

27 Jul 2021 21:38:03,841 INFO : Starting to import Skyline document from TRP metabolites quantification in DBS cohort samples, measurement 2.sky.zip

27 Jul 2021 21:38:03,847 INFO : Expanding TRP metabolites quantification in DBS cohort samples, measurement 2.skyd

27 Jul 2021 21:38:03,981 INFO : Expanding TRP metabolites quantification in DBS cohort samples, measurement 2.sky.view

27 Jul 2021 21:38:03,982 INFO : Expanding TRP metabolites quantification in DBS cohort samples, measurement 2.sky

27 Jul 2021 21:38:03,994 INFO : 4% Done

27 Jul 2021 21:38:04,108 DEBUG: Starting to load chromatogram headers

27 Jul 2021 21:38:04,112 DEBUG: Done loading chromatogram headers

27 Jul 2021 21:38:04,235 INFO : Inserting ANTHRANILATE

27 Jul 2021 21:38:04,241 INFO : 11% Done

27 Jul 2021 21:38:04,296 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:04,296 INFO : Inserting ANTHRANILATE[13C6]

27 Jul 2021 21:38:04,302 INFO : 17% Done

27 Jul 2021 21:38:04,355 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:04,355 INFO : Inserting INDOLE-3-ACETAMIDE

27 Jul 2021 21:38:04,362 INFO : 23% Done

27 Jul 2021 21:38:04,415 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:04,415 INFO : Inserting INDOLE-3-ACETAMIDE[2H5][15N]

27 Jul 2021 21:38:04,422 INFO : 28% Done

27 Jul 2021 21:38:04,476 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:04,476 INFO : Inserting INDOLE-3-ACETATE

27 Jul 2021 21:38:04,480 INFO : 32% Done

27 Jul 2021 21:38:04,524 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:04,524 INFO : Inserting INDOLE-3-ALDEHYDE

27 Jul 2021 21:38:04,533 INFO : 43% Done

27 Jul 2021 21:38:04,623 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:04,624 INFO : Inserting INDOLE-3-BUTYRIC ACID

27 Jul 2021 21:38:04,631 INFO : 49% Done

27 Jul 2021 21:38:04,689 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:04,689 INFO : Inserting INDOLE-3-LACTIC ACID

27 Jul 2021 21:38:04,697 INFO : 57% Done

27 Jul 2021 21:38:04,764 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:04,765 INFO : Inserting INDOLE-3-PROPIONIC ACID

27 Jul 2021 21:38:04,772 INFO : 63% Done

27 Jul 2021 21:38:04,830 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:04,830 INFO : Inserting L-KYNURENINE

27 Jul 2021 21:38:04,836 INFO : 69% Done

27 Jul 2021 21:38:04,891 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:04,891 INFO : Inserting L-KYNURENINE[2H5]

27 Jul 2021 21:38:04,897 INFO : 74% Done

27 Jul 2021 21:38:04,951 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:04,951 INFO : Inserting L-TRYPTOPHAN

27 Jul 2021 21:38:04,958 INFO : 80% Done

27 Jul 2021 21:38:05,012 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:05,012 INFO : Inserting L-TRYPTOPHAN[11C13][2N15]

27 Jul 2021 21:38:05,019 INFO : 86% Done

27 Jul 2021 21:38:05,073 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:05,073 INFO : Inserting N-ACETYLTRYPTOPHAN

27 Jul 2021 21:38:05,081 INFO : 94% Done

27 Jul 2021 21:38:05,146 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:05,146 INFO : Inserting INDOL-3-ACETIC ACID (13C6)

27 Jul 2021 21:38:05,152 INFO : 98% Done

27 Jul 2021 21:38:05,197 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:05,197 INFO : Done parsing Skyline document.

27 Jul 2021 21:38:05,198 INFO : Creating and populating temp tables for Proportion values

27 Jul 2021 21:38:05,217 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

27 Jul 2021 21:38:05,304 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

27 Jul 2021 21:38:05,369 INFO : Cleaning up temp tables

27 Jul 2021 21:38:05,638 INFO : Completed import of Skyline document from TRP metabolites quantification in DBS cohort samples, measurement 2.sky.zip

27 Jul 2021 21:38:05,641 INFO : 100% Done

27 Jul 2021 21:38:05,644 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Masaryk%20RECETOX%20-%20Aust%20Benesova%20et%20al._b81744be-d18a-1039-99d4-fea6ddf51ea2/_temp__2021-07-27_21-35/export/xar/experiments_and_runs.xar.exploded/Run114364/TRP%20metabolites%20quantification%20in%20DBS%20cohort%20samples,%20measurement%202.sky.zip into the system

27 Jul 2021 21:38:05,644 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Masaryk%20RECETOX%20-%20Aust%20Benesova%20et%20al._b81744be-d18a-1039-99d4-fea6ddf51ea2/_temp__2021-07-27_21-35/export/xar/experiments_and_runs.xar.exploded/Run114364/TRP%20metabolites%20quantification%20in%20DBS%20cohort%20samples,%20measurement%202/TRP%20metabolites%20quantification%20in%20DBS%20cohort%20samples,%20measurement%202.skyd into the system

27 Jul 2021 21:38:05,644 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Masaryk%20RECETOX%20-%20Aust%20Benesova%20et%20al._b81744be-d18a-1039-99d4-fea6ddf51ea2/_temp__2021-07-27_21-35/export/xar/experiments_and_runs.xar.exploded/Run114364/TRP%20metabolites%20quantification%20in%20DBS%20cohort%20samples,%20measurement%202/TRP%20metabolites%20quantification%20in%20DBS%20cohort%20samples,%20measurement%202.skyd into the system

27 Jul 2021 21:38:05,644 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Masaryk%20RECETOX%20-%20Aust%20Benesova%20et%20al._b81744be-d18a-1039-99d4-fea6ddf51ea2/_temp__2021-07-27_21-35/export/xar/experiments_and_runs.xar.exploded/Run114365/TRP%20metabolites%20quantification%20in%20DBS%20cohort%20samples,%20measurement%203.sky.zip into the system

27 Jul 2021 21:38:05,645 INFO : Starting import from TRP metabolites quantification in DBS cohort samples, measurement 3.sky.zip

27 Jul 2021 21:38:05,647 INFO : Starting to import Skyline document from TRP metabolites quantification in DBS cohort samples, measurement 3.sky.zip

27 Jul 2021 21:38:05,653 INFO : Expanding TRP metabolites quantification in DBS cohort samples, measurement 3.skyd

27 Jul 2021 21:38:05,790 INFO : Expanding TRP metabolites quantification in DBS cohort samples, measurement 3.sky.view

27 Jul 2021 21:38:05,791 INFO : Expanding TRP metabolites quantification in DBS cohort samples, measurement 3.sky

27 Jul 2021 21:38:05,804 INFO : 4% Done

27 Jul 2021 21:38:05,931 DEBUG: Starting to load chromatogram headers

27 Jul 2021 21:38:05,935 DEBUG: Done loading chromatogram headers

27 Jul 2021 21:38:06,065 INFO : Inserting ANTHRANILATE

27 Jul 2021 21:38:06,073 INFO : 11% Done

27 Jul 2021 21:38:06,129 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:06,129 INFO : Inserting ANTHRANILATE[13C6]

27 Jul 2021 21:38:06,135 INFO : 17% Done

27 Jul 2021 21:38:06,192 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:06,192 INFO : Inserting INDOLE-3-ACETAMIDE

27 Jul 2021 21:38:06,200 INFO : 23% Done

27 Jul 2021 21:38:06,256 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:06,256 INFO : Inserting INDOLE-3-ACETAMIDE[2H5][15N]

27 Jul 2021 21:38:06,263 INFO : 28% Done

27 Jul 2021 21:38:06,320 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:06,320 INFO : Inserting INDOLE-3-ACETATE

27 Jul 2021 21:38:06,324 INFO : 32% Done

27 Jul 2021 21:38:06,369 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:06,369 INFO : Inserting INDOLE-3-ALDEHYDE

27 Jul 2021 21:38:06,379 INFO : 43% Done

27 Jul 2021 21:38:06,475 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:06,475 INFO : Inserting INDOLE-3-BUTYRIC ACID

27 Jul 2021 21:38:06,484 INFO : 49% Done

27 Jul 2021 21:38:06,542 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:06,542 INFO : Inserting INDOLE-3-LACTIC ACID

27 Jul 2021 21:38:06,551 INFO : 57% Done

27 Jul 2021 21:38:06,618 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:06,618 INFO : Inserting INDOLE-3-PROPIONIC ACID

27 Jul 2021 21:38:06,625 INFO : 63% Done

27 Jul 2021 21:38:06,683 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:06,683 INFO : Inserting L-KYNURENINE

27 Jul 2021 21:38:06,689 INFO : 69% Done

27 Jul 2021 21:38:06,745 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:06,745 INFO : Inserting L-KYNURENINE[2H5]

27 Jul 2021 21:38:06,751 INFO : 74% Done

27 Jul 2021 21:38:06,806 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:06,806 INFO : Inserting L-TRYPTOPHAN

27 Jul 2021 21:38:06,813 INFO : 80% Done

27 Jul 2021 21:38:06,869 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:06,870 INFO : Inserting L-TRYPTOPHAN[11C13][2N15]

27 Jul 2021 21:38:06,876 INFO : 86% Done

27 Jul 2021 21:38:06,935 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:06,935 INFO : Inserting N-ACETYLTRYPTOPHAN

27 Jul 2021 21:38:06,944 INFO : 94% Done

27 Jul 2021 21:38:07,012 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:07,012 INFO : Inserting INDOL-3-ACETIC ACID (13C6)

27 Jul 2021 21:38:07,018 INFO : 98% Done

27 Jul 2021 21:38:07,065 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:07,066 INFO : Done parsing Skyline document.

27 Jul 2021 21:38:07,067 INFO : Creating and populating temp tables for Proportion values

27 Jul 2021 21:38:07,085 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

27 Jul 2021 21:38:07,170 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

27 Jul 2021 21:38:07,235 INFO : Cleaning up temp tables

27 Jul 2021 21:38:07,503 INFO : Completed import of Skyline document from TRP metabolites quantification in DBS cohort samples, measurement 3.sky.zip

27 Jul 2021 21:38:07,506 INFO : 100% Done

27 Jul 2021 21:38:07,509 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Masaryk%20RECETOX%20-%20Aust%20Benesova%20et%20al._b81744be-d18a-1039-99d4-fea6ddf51ea2/_temp__2021-07-27_21-35/export/xar/experiments_and_runs.xar.exploded/Run114365/TRP%20metabolites%20quantification%20in%20DBS%20cohort%20samples,%20measurement%203.sky.zip into the system

27 Jul 2021 21:38:07,509 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Masaryk%20RECETOX%20-%20Aust%20Benesova%20et%20al._b81744be-d18a-1039-99d4-fea6ddf51ea2/_temp__2021-07-27_21-35/export/xar/experiments_and_runs.xar.exploded/Run114365/TRP%20metabolites%20quantification%20in%20DBS%20cohort%20samples,%20measurement%203/TRP%20metabolites%20quantification%20in%20DBS%20cohort%20samples,%20measurement%203.skyd into the system

27 Jul 2021 21:38:07,509 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Masaryk%20RECETOX%20-%20Aust%20Benesova%20et%20al._b81744be-d18a-1039-99d4-fea6ddf51ea2/_temp__2021-07-27_21-35/export/xar/experiments_and_runs.xar.exploded/Run114365/TRP%20metabolites%20quantification%20in%20DBS%20cohort%20samples,%20measurement%203/TRP%20metabolites%20quantification%20in%20DBS%20cohort%20samples,%20measurement%203.skyd into the system

27 Jul 2021 21:38:07,509 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Masaryk%20RECETOX%20-%20Aust%20Benesova%20et%20al._b81744be-d18a-1039-99d4-fea6ddf51ea2/_temp__2021-07-27_21-35/export/xar/experiments_and_runs.xar.exploded/Run114467/TRP%20metabolites%20calibration/TRP%20metabolites%20calibration%20curves.skyd into the system

27 Jul 2021 21:38:07,509 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Masaryk%20RECETOX%20-%20Aust%20Benesova%20et%20al._b81744be-d18a-1039-99d4-fea6ddf51ea2/_temp__2021-07-27_21-35/export/xar/experiments_and_runs.xar.exploded/Run114467/TRP%20metabolites%20calibration/TRP%20metabolites%20calibration%20curves.skyd into the system

27 Jul 2021 21:38:07,509 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Masaryk%20RECETOX%20-%20Aust%20Benesova%20et%20al._b81744be-d18a-1039-99d4-fea6ddf51ea2/_temp__2021-07-27_21-35/export/xar/experiments_and_runs.xar.exploded/Run114467/TRP%20metabolites%20calibration.sky.zip into the system

27 Jul 2021 21:38:07,510 INFO : Starting import from TRP metabolites calibration.sky.zip

27 Jul 2021 21:38:07,512 INFO : Starting to import Skyline document from TRP metabolites calibration.sky.zip

27 Jul 2021 21:38:07,515 INFO : Expanding TRP metabolites calibration curves.skyd

27 Jul 2021 21:38:07,573 INFO : Expanding TRP metabolites calibration curves.sky.view

27 Jul 2021 21:38:07,573 INFO : Expanding TRP metabolites calibration curves.sky

27 Jul 2021 21:38:07,581 INFO : 7% Done

27 Jul 2021 21:38:07,626 DEBUG: Starting to load chromatogram headers

27 Jul 2021 21:38:07,628 DEBUG: Done loading chromatogram headers

27 Jul 2021 21:38:07,698 INFO : Inserting ANTHRANILATE

27 Jul 2021 21:38:07,703 INFO : 19% Done

27 Jul 2021 21:38:07,730 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:07,731 INFO : Inserting ANTHRANILATE[13C6]

27 Jul 2021 21:38:07,734 INFO : 27% Done

27 Jul 2021 21:38:07,764 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:07,764 INFO : Inserting INDOLE-3-ACETAMIDE

27 Jul 2021 21:38:07,768 INFO : 37% Done

27 Jul 2021 21:38:07,792 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:07,792 INFO : Inserting INDOLE-3-ACETAMIDE[2H5][15N]

27 Jul 2021 21:38:07,796 INFO : 46% Done

27 Jul 2021 21:38:07,823 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:07,823 INFO : Inserting INDOLE-3-ACETATE

27 Jul 2021 21:38:07,826 INFO : 53% Done

27 Jul 2021 21:38:07,845 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:07,845 INFO : Inserting INDOLE-3-ACETATE[13C6]

27 Jul 2021 21:38:07,848 INFO : 59% Done

27 Jul 2021 21:38:07,870 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:07,870 INFO : Inserting L-KYNURENINE

27 Jul 2021 21:38:07,873 INFO : 69% Done

27 Jul 2021 21:38:07,897 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:07,897 INFO : Inserting L-KYNURENINE[2H5]

27 Jul 2021 21:38:07,901 INFO : 77% Done

27 Jul 2021 21:38:07,931 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:07,931 INFO : Inserting L-TRYPTOPHAN

27 Jul 2021 21:38:07,934 INFO : 87% Done

27 Jul 2021 21:38:07,958 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:07,959 INFO : Inserting L-TRYPTOPHAN[11C13][2N15]

27 Jul 2021 21:38:07,963 INFO : 98% Done

27 Jul 2021 21:38:07,997 DEBUG: Total molecules inserted: 1

27 Jul 2021 21:38:07,997 INFO : Done parsing Skyline document.

27 Jul 2021 21:38:07,998 INFO : Creating and populating temp tables for Proportion values

27 Jul 2021 21:38:08,009 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

27 Jul 2021 21:38:08,030 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

27 Jul 2021 21:38:08,046 INFO : Cleaning up temp tables

27 Jul 2021 21:38:08,323 INFO : Completed import of Skyline document from TRP metabolites calibration.sky.zip

27 Jul 2021 21:38:08,326 INFO : 100% Done

27 Jul 2021 21:38:08,329 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Masaryk%20RECETOX%20-%20Aust%20Benesova%20et%20al._b81744be-d18a-1039-99d4-fea6ddf51ea2/_temp__2021-07-27_21-35/export/xar/experiments_and_runs.xar.exploded/Run114467/TRP%20metabolites%20calibration.sky.zip into the system

27 Jul 2021 21:38:08,344 INFO : Done importing xar

27 Jul 2021 21:38:08,346 INFO : Loading pages and webpart properties

27 Jul 2021 21:38:08,412 INFO : Done importing pages and webpart properties

27 Jul 2021 21:38:08,412 INFO : 

27 Jul 2021 21:38:08,412 INFO : Experiment import completed successfully.

27 Jul 2021 21:38:08,412 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'

27 Jul 2021 21:38:08,441 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'

27 Jul 2021 21:38:08,441 INFO : 

27 Jul 2021 21:38:08,441 INFO : Finishing up experiment copy.

27 Jul 2021 21:38:08,442 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.

27 Jul 2021 21:38:08,443 INFO : Assigning a ProteomeXchange ID.

27 Jul 2021 21:38:08,718 INFO : Assigning a DOI.

27 Jul 2021 21:38:10,608 INFO : Assigned DOI: 10.6069/qx9d-dj90

27 Jul 2021 21:38:10,614 INFO : Updating access URL to point to the new copy of the data.

27 Jul 2021 21:38:10,620 INFO : Setting the 'copied' timestamp and journalExperimentId on the JournalExperiment table.

27 Jul 2021 21:38:10,621 INFO : Removing copy permissions given to journal.

27 Jul 2021 21:38:10,622 INFO : Adding read permissions to all users that are folder admins in the source container.

27 Jul 2021 21:38:10,630 INFO : Setting the TargetedMS folder type to 'Experimental Data'

27 Jul 2021 21:38:10,632 INFO : Updating the 'Raw Data' tab configuration

27 Jul 2021 21:38:10,636 INFO : Updating dataFileUrls for run APP quantification in DBS cohort samples.sky.zip; targetedms run ID 117015

27 Jul 2021 21:38:10,636 INFO : Updating dataFileUrl...

27 Jul 2021 21:38:10,636 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Masaryk%20RECETOX%20-%20Aust%20Benesova%20et%20al._b81744be-d18a-1039-99d4-fea6ddf51ea2/_temp__2021-07-27_21-35/export/xar/experiments_and_runs.xar.exploded/Run114358/APP%20quantification%20in%20DBS%20cohort%20samples/APP%20quantification%20in%20DBS%20cohort%20samples.skyd

27 Jul 2021 21:38:10,636 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/U%20of%20Masaryk%20RECETOX%20-%20Aust%20Benesova%20et%20al./@files/APP%20quantification%20in%20DBS%20cohort%20samples/APP%20quantification%20in%20DBS%20cohort%20samples.skyd

27 Jul 2021 21:38:10,638 INFO : Updating dataFileUrl...

27 Jul 2021 21:38:10,638 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Masaryk%20RECETOX%20-%20Aust%20Benesova%20et%20al._b81744be-d18a-1039-99d4-fea6ddf51ea2/_temp__2021-07-27_21-35/export/xar/experiments_and_runs.xar.exploded/Run114358/APP%20quantification%20in%20DBS%20cohort%20samples.sky.zip

27 Jul 2021 21:38:10,638 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/U%20of%20Masaryk%20RECETOX%20-%20Aust%20Benesova%20et%20al./@files/APP%20quantification%20in%20DBS%20cohort%20samples.sky.zip

27 Jul 2021 21:38:10,641 INFO : Updating dataFileUrls for run TRP metabolites quantification in DBS cohort samples, measurement 1.sky.zip; targetedms run ID 117016

27 Jul 2021 21:38:10,641 INFO : Updating dataFileUrl...

27 Jul 2021 21:38:10,641 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Masaryk%20RECETOX%20-%20Aust%20Benesova%20et%20al._b81744be-d18a-1039-99d4-fea6ddf51ea2/_temp__2021-07-27_21-35/export/xar/experiments_and_runs.xar.exploded/Run114362/TRP%20metabolites%20quantification%20in%20DBS%20cohort%20samples,%20measurement%201/TRP%20metabolites%20quantification%20in%20DBS%20cohort%20samples,%20measurement%201.skyd

27 Jul 2021 21:38:10,641 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/U%20of%20Masaryk%20RECETOX%20-%20Aust%20Benesova%20et%20al./@files/TRP%20metabolites%20quantification%20in%20DBS%20cohort%20samples,%20measurement%201/TRP%20metabolites%20quantification%20in%20DBS%20cohort%20samples,%20measurement%201.skyd

27 Jul 2021 21:38:10,642 INFO : Updating dataFileUrl...

27 Jul 2021 21:38:10,642 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Masaryk%20RECETOX%20-%20Aust%20Benesova%20et%20al._b81744be-d18a-1039-99d4-fea6ddf51ea2/_temp__2021-07-27_21-35/export/xar/experiments_and_runs.xar.exploded/Run114362/TRP%20metabolites%20quantification%20in%20DBS%20cohort%20samples,%20measurement%201.sky.zip

27 Jul 2021 21:38:10,642 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/U%20of%20Masaryk%20RECETOX%20-%20Aust%20Benesova%20et%20al./@files/TRP%20metabolites%20quantification%20in%20DBS%20cohort%20samples,%20measurement%201.sky.zip

27 Jul 2021 21:38:10,644 INFO : Updating dataFileUrls for run TRP metabolites quantification in DBS cohort samples, measurement 2.sky.zip; targetedms run ID 117017

27 Jul 2021 21:38:10,645 INFO : Updating dataFileUrl...

27 Jul 2021 21:38:10,645 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Masaryk%20RECETOX%20-%20Aust%20Benesova%20et%20al._b81744be-d18a-1039-99d4-fea6ddf51ea2/_temp__2021-07-27_21-35/export/xar/experiments_and_runs.xar.exploded/Run114364/TRP%20metabolites%20quantification%20in%20DBS%20cohort%20samples,%20measurement%202.sky.zip

27 Jul 2021 21:38:10,645 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/U%20of%20Masaryk%20RECETOX%20-%20Aust%20Benesova%20et%20al./@files/TRP%20metabolites%20quantification%20in%20DBS%20cohort%20samples,%20measurement%202.sky.zip

27 Jul 2021 21:38:10,646 INFO : Updating dataFileUrl...

27 Jul 2021 21:38:10,646 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Masaryk%20RECETOX%20-%20Aust%20Benesova%20et%20al._b81744be-d18a-1039-99d4-fea6ddf51ea2/_temp__2021-07-27_21-35/export/xar/experiments_and_runs.xar.exploded/Run114364/TRP%20metabolites%20quantification%20in%20DBS%20cohort%20samples,%20measurement%202/TRP%20metabolites%20quantification%20in%20DBS%20cohort%20samples,%20measurement%202.skyd

27 Jul 2021 21:38:10,646 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/U%20of%20Masaryk%20RECETOX%20-%20Aust%20Benesova%20et%20al./@files/TRP%20metabolites%20quantification%20in%20DBS%20cohort%20samples,%20measurement%202/TRP%20metabolites%20quantification%20in%20DBS%20cohort%20samples,%20measurement%202.skyd

27 Jul 2021 21:38:10,648 INFO : Updating dataFileUrls for run TRP metabolites quantification in DBS cohort samples, measurement 3.sky.zip; targetedms run ID 117018

27 Jul 2021 21:38:10,648 INFO : Updating dataFileUrl...

27 Jul 2021 21:38:10,648 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Masaryk%20RECETOX%20-%20Aust%20Benesova%20et%20al._b81744be-d18a-1039-99d4-fea6ddf51ea2/_temp__2021-07-27_21-35/export/xar/experiments_and_runs.xar.exploded/Run114365/TRP%20metabolites%20quantification%20in%20DBS%20cohort%20samples,%20measurement%203/TRP%20metabolites%20quantification%20in%20DBS%20cohort%20samples,%20measurement%203.skyd

27 Jul 2021 21:38:10,648 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/U%20of%20Masaryk%20RECETOX%20-%20Aust%20Benesova%20et%20al./@files/TRP%20metabolites%20quantification%20in%20DBS%20cohort%20samples,%20measurement%203/TRP%20metabolites%20quantification%20in%20DBS%20cohort%20samples,%20measurement%203.skyd

27 Jul 2021 21:38:10,650 INFO : Updating dataFileUrl...

27 Jul 2021 21:38:10,650 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Masaryk%20RECETOX%20-%20Aust%20Benesova%20et%20al._b81744be-d18a-1039-99d4-fea6ddf51ea2/_temp__2021-07-27_21-35/export/xar/experiments_and_runs.xar.exploded/Run114365/TRP%20metabolites%20quantification%20in%20DBS%20cohort%20samples,%20measurement%203.sky.zip

27 Jul 2021 21:38:10,650 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/U%20of%20Masaryk%20RECETOX%20-%20Aust%20Benesova%20et%20al./@files/TRP%20metabolites%20quantification%20in%20DBS%20cohort%20samples,%20measurement%203.sky.zip

27 Jul 2021 21:38:10,652 INFO : Updating dataFileUrls for run TRP metabolites calibration.sky.zip; targetedms run ID 117019

27 Jul 2021 21:38:10,652 INFO : Updating dataFileUrl...

27 Jul 2021 21:38:10,652 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Masaryk%20RECETOX%20-%20Aust%20Benesova%20et%20al._b81744be-d18a-1039-99d4-fea6ddf51ea2/_temp__2021-07-27_21-35/export/xar/experiments_and_runs.xar.exploded/Run114467/TRP%20metabolites%20calibration.sky.zip

27 Jul 2021 21:38:10,652 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/U%20of%20Masaryk%20RECETOX%20-%20Aust%20Benesova%20et%20al./@files/TRP%20metabolites%20calibration.sky.zip

27 Jul 2021 21:38:10,653 INFO : Updating dataFileUrl...

27 Jul 2021 21:38:10,653 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Masaryk%20RECETOX%20-%20Aust%20Benesova%20et%20al._b81744be-d18a-1039-99d4-fea6ddf51ea2/_temp__2021-07-27_21-35/export/xar/experiments_and_runs.xar.exploded/Run114467/TRP%20metabolites%20calibration/TRP%20metabolites%20calibration%20curves.skyd

27 Jul 2021 21:38:10,653 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/U%20of%20Masaryk%20RECETOX%20-%20Aust%20Benesova%20et%20al./@files/TRP%20metabolites%20calibration/TRP%20metabolites%20calibration%20curves.skyd

27 Jul 2021 21:38:10,658 INFO : Creating a reviewer account.

27 Jul 2021 21:38:10,852 INFO : Created reviewer with email: User panorama+reviewer51@proteinms.net

27 Jul 2021 21:38:10,859 INFO : Hiding the Data Pipeline tab.

27 Jul 2021 21:38:10,940 INFO : Emailing submitter.

27 Jul 2021 21:38:11,040 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'