31 May 2022 15:17:51,503 INFO : Validating data for a ProteomeXchange submission.
31 May 2022 15:17:51,504 INFO : =======================================
31 May 2022 15:17:51,664 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.PxDataValidationTask' at location 'webserver'
31 May 2022 15:17:51,665 INFO : Validating data for experiment Id: 1352, validation Id: 46
31 May 2022 15:17:51,744 INFO : Validating data for 3 Skyline documents in 1 folders
31 May 2022 15:17:52,751 INFO : Sample file validation for Skyline document: seMSE_MPDS_copy_2021-09-13_12-02-59.sky.zip
31 May 2022 15:17:52,751 INFO : Found all sample files.
31 May 2022 15:17:52,818 INFO : Sample file validation for Skyline document: seMSE_MPDS_2021-09-13_12-06-55.sky.zip
31 May 2022 15:17:52,818 INFO : Found all sample files.
31 May 2022 15:17:53,534 INFO : Sample file validation for Skyline document: seMSE_EColi_MPDS_2021-09-13_15-58-40.sky.zip
31 May 2022 15:17:53,534 INFO : Found all sample files.
31 May 2022 15:17:53,615 INFO : Modifications validation:
31 May 2022 15:17:53,615 INFO : VALID MODIFICATIONS:
31 May 2022 15:17:53,615 INFO : 169: Dehydrated (D): UNIMOD:23 - Dehydrated
31 May 2022 15:17:53,615 INFO : seMSE_MPDS_2021-09-13_12-06-55.sky.zip
31 May 2022 15:17:53,616 INFO : seMSE_MPDS_copy_2021-09-13_12-02-59.sky.zip
31 May 2022 15:17:53,616 INFO : seMSE_EColi_MPDS_2021-09-13_15-58-40.sky.zip
31 May 2022 15:17:53,616 INFO : 170: Carbamyl (N-term): UNIMOD:5 - Carbamyl
31 May 2022 15:17:53,616 INFO : seMSE_MPDS_2021-09-13_12-06-55.sky.zip
31 May 2022 15:17:53,616 INFO : seMSE_MPDS_copy_2021-09-13_12-02-59.sky.zip
31 May 2022 15:17:53,616 INFO : seMSE_EColi_MPDS_2021-09-13_15-58-40.sky.zip
31 May 2022 15:17:53,616 INFO : 171: Methyl (T): UNIMOD:34 - Methyl
31 May 2022 15:17:53,616 INFO : seMSE_EColi_MPDS_2021-09-13_15-58-40.sky.zip
31 May 2022 15:17:53,616 INFO : 172: Dehydrated (S): UNIMOD:23 - Dehydrated
31 May 2022 15:17:53,616 INFO : seMSE_MPDS_2021-09-13_12-06-55.sky.zip
31 May 2022 15:17:53,616 INFO : seMSE_MPDS_copy_2021-09-13_12-02-59.sky.zip
31 May 2022 15:17:53,616 INFO : seMSE_EColi_MPDS_2021-09-13_15-58-40.sky.zip
31 May 2022 15:17:53,616 INFO : 173: Dehydrated (T): UNIMOD:23 - Dehydrated
31 May 2022 15:17:53,616 INFO : seMSE_MPDS_2021-09-13_12-06-55.sky.zip
31 May 2022 15:17:53,616 INFO : seMSE_MPDS_copy_2021-09-13_12-02-59.sky.zip
31 May 2022 15:17:53,616 INFO : seMSE_EColi_MPDS_2021-09-13_15-58-40.sky.zip
31 May 2022 15:17:53,616 INFO : 174: Carboxymethyl (C): UNIMOD:6 - Carboxymethyl
31 May 2022 15:17:53,616 INFO : seMSE_MPDS_2021-09-13_12-06-55.sky.zip
31 May 2022 15:17:53,616 INFO : seMSE_MPDS_copy_2021-09-13_12-02-59.sky.zip
31 May 2022 15:17:53,616 INFO : seMSE_EColi_MPDS_2021-09-13_15-58-40.sky.zip
31 May 2022 15:17:53,616 INFO : 175: Oxidation (M): UNIMOD:35 - Oxidation
31 May 2022 15:17:53,616 INFO : seMSE_MPDS_2021-09-13_12-06-55.sky.zip
31 May 2022 15:17:53,616 INFO : seMSE_MPDS_copy_2021-09-13_12-02-59.sky.zip
31 May 2022 15:17:53,616 INFO : seMSE_EColi_MPDS_2021-09-13_15-58-40.sky.zip
31 May 2022 15:17:53,616 INFO : 176: Glu->pyro-Glu (N-term E): UNIMOD:27 - Glu->pyro-Glu
31 May 2022 15:17:53,616 INFO : seMSE_MPDS_2021-09-13_12-06-55.sky.zip
31 May 2022 15:17:53,616 INFO : seMSE_MPDS_copy_2021-09-13_12-02-59.sky.zip
31 May 2022 15:17:53,616 INFO : seMSE_EColi_MPDS_2021-09-13_15-58-40.sky.zip
31 May 2022 15:17:53,616 INFO : 177: Biotin-PEO-Amine (E): UNIMOD:289 - Biotin-PEO-Amine
31 May 2022 15:17:53,616 INFO : seMSE_EColi_MPDS_2021-09-13_15-58-40.sky.zip
31 May 2022 15:17:53,616 INFO : 179: Carbamidomethyl (C): UNIMOD:4 - Carbamidomethyl
31 May 2022 15:17:53,617 INFO : seMSE_MPDS_2021-09-13_12-06-55.sky.zip
31 May 2022 15:17:53,617 INFO : seMSE_MPDS_copy_2021-09-13_12-02-59.sky.zip
31 May 2022 15:17:53,617 INFO : seMSE_EColi_MPDS_2021-09-13_15-58-40.sky.zip
31 May 2022 15:17:53,617 INFO : 180: Deamidated (NQ): UNIMOD:7 - Deamidated
31 May 2022 15:17:53,618 INFO : seMSE_MPDS_2021-09-13_12-06-55.sky.zip
31 May 2022 15:17:53,618 INFO : seMSE_MPDS_copy_2021-09-13_12-02-59.sky.zip
31 May 2022 15:17:53,618 INFO : seMSE_EColi_MPDS_2021-09-13_15-58-40.sky.zip
31 May 2022 15:17:53,618 INFO : 181: Acetyl (N-term): UNIMOD:1 - Acetyl
31 May 2022 15:17:53,618 INFO : seMSE_MPDS_2021-09-13_12-06-55.sky.zip
31 May 2022 15:17:53,618 INFO : seMSE_MPDS_copy_2021-09-13_12-02-59.sky.zip
31 May 2022 15:17:53,618 INFO : seMSE_EColi_MPDS_2021-09-13_15-58-40.sky.zip
31 May 2022 15:17:53,618 INFO : 182: Acetyl (K): UNIMOD:1 - Acetyl
31 May 2022 15:17:53,618 INFO : seMSE_EColi_MPDS_2021-09-13_15-58-40.sky.zip
31 May 2022 15:17:53,618 INFO : 183: Dehydrated (Y): UNIMOD:23 - Dehydrated
31 May 2022 15:17:53,618 INFO : seMSE_EColi_MPDS_2021-09-13_15-58-40.sky.zip
31 May 2022 15:17:53,619 INFO : 184: Carbamidomethyl (N-term): UNIMOD:4 - Carbamidomethyl
31 May 2022 15:17:53,619 INFO : seMSE_MPDS_2021-09-13_12-06-55.sky.zip
31 May 2022 15:17:53,619 INFO : seMSE_MPDS_copy_2021-09-13_12-02-59.sky.zip
31 May 2022 15:17:53,619 INFO : seMSE_EColi_MPDS_2021-09-13_15-58-40.sky.zip
31 May 2022 15:17:53,619 INFO : 185: Gln->pyro-Glu (N-term Q): UNIMOD:28 - Gln->pyro-Glu
31 May 2022 15:17:53,619 INFO : seMSE_MPDS_2021-09-13_12-06-55.sky.zip
31 May 2022 15:17:53,619 INFO : seMSE_MPDS_copy_2021-09-13_12-02-59.sky.zip
31 May 2022 15:17:53,619 INFO : seMSE_EColi_MPDS_2021-09-13_15-58-40.sky.zip
31 May 2022 15:17:53,619 INFO : 186: Carbamidomethyl (H): UNIMOD:4 - Carbamidomethyl
31 May 2022 15:17:53,619 INFO : seMSE_EColi_MPDS_2021-09-13_15-58-40.sky.zip
31 May 2022 15:17:53,619 INFO : 187: Pro->Pyrrolidinone (P): UNIMOD:360 - Pro->Pyrrolidinone
31 May 2022 15:17:53,619 INFO : seMSE_EColi_MPDS_2021-09-13_15-58-40.sky.zip
31 May 2022 15:17:53,619 INFO : 188: Carbamyl (K): UNIMOD:5 - Carbamyl
31 May 2022 15:17:53,619 INFO : seMSE_MPDS_2021-09-13_12-06-55.sky.zip
31 May 2022 15:17:53,619 INFO : seMSE_MPDS_copy_2021-09-13_12-02-59.sky.zip
31 May 2022 15:17:53,619 INFO : seMSE_EColi_MPDS_2021-09-13_15-58-40.sky.zip
31 May 2022 15:17:53,619 INFO : 189: DAET (T): UNIMOD:178 - DAET
31 May 2022 15:17:53,619 INFO : seMSE_EColi_MPDS_2021-09-13_15-58-40.sky.zip
31 May 2022 15:17:53,619 INFO : 190: Propionamide (N-term): UNIMOD:24 - Propionamide
31 May 2022 15:17:53,619 INFO : seMSE_MPDS_2021-09-13_12-06-55.sky.zip
31 May 2022 15:17:53,619 INFO : seMSE_MPDS_copy_2021-09-13_12-02-59.sky.zip
31 May 2022 15:17:53,619 INFO : seMSE_EColi_MPDS_2021-09-13_15-58-40.sky.zip
31 May 2022 15:17:53,619 INFO : 191: Ammonia-loss (N): UNIMOD:385 - Ammonia-loss
31 May 2022 15:17:53,619 INFO : seMSE_MPDS_2021-09-13_12-06-55.sky.zip
31 May 2022 15:17:53,619 INFO : seMSE_MPDS_copy_2021-09-13_12-02-59.sky.zip
31 May 2022 15:17:53,619 INFO : seMSE_EColi_MPDS_2021-09-13_15-58-40.sky.zip
31 May 2022 15:17:53,619 INFO : 192: Methyl (K): UNIMOD:34 - Methyl
31 May 2022 15:17:53,619 INFO : seMSE_EColi_MPDS_2021-09-13_15-58-40.sky.zip
31 May 2022 15:17:53,619 INFO : 193: Dethiomethyl (M): UNIMOD:526 - Dethiomethyl
31 May 2022 15:17:53,619 INFO : seMSE_MPDS_2021-09-13_12-06-55.sky.zip
31 May 2022 15:17:53,619 INFO : seMSE_MPDS_copy_2021-09-13_12-02-59.sky.zip
31 May 2022 15:17:53,619 INFO : seMSE_EColi_MPDS_2021-09-13_15-58-40.sky.zip
31 May 2022 15:17:53,619 INFO : 194: Cation:Na (C-term): UNIMOD:30 - Cation:Na
31 May 2022 15:17:53,620 INFO : seMSE_MPDS_2021-09-13_12-06-55.sky.zip
31 May 2022 15:17:53,620 INFO : seMSE_MPDS_copy_2021-09-13_12-02-59.sky.zip
31 May 2022 15:17:53,620 INFO : INVALID MODIFICATIONS (No Unimod ID):
31 May 2022 15:17:53,620 INFO : 178: Carbamidomethy 2x (C-,N-term): No UNIMOD Id
31 May 2022 15:17:53,620 INFO : seMSE_MPDS_2021-09-13_12-06-55.sky.zip
31 May 2022 15:17:53,620 INFO : seMSE_MPDS_copy_2021-09-13_12-02-59.sky.zip
31 May 2022 15:17:53,620 INFO : seMSE_EColi_MPDS_2021-09-13_15-58-40.sky.zip
31 May 2022 15:17:54,412 INFO : Spectral library validation:
31 May 2022 15:17:54,412 INFO : 'EColi_MPDS_UDMSE_PLGS_TI' (EColi_MPDS_UDMSE_PLGS_TI.blib) library in 1 Skyline documents was built with 3 raw files; 0 peptide Id files. Status: BiblioSpec library was not built with mass spec results.
31 May 2022 15:17:54,412 INFO : 'EColi_MPDS_MSE_PLGS_TI' (EColi_MPDS_MSE_PLGS_TI.blib) library in 1 Skyline documents was built with 3 raw files; 0 peptide Id files. Status: BiblioSpec library was not built with mass spec results.
31 May 2022 15:17:54,412 INFO : 'EColi_MPDS_HDMSE_PLGS_TI' (EColi_MPDS_HDMSE_PLGS_TI.blib) library in 1 Skyline documents was built with 3 raw files; 0 peptide Id files. Status: BiblioSpec library was not built with mass spec results.
31 May 2022 15:17:54,412 INFO : 'MPDS_MSE_PLGS_TI' (MPDS_MSE_PLGS_TI.blib) library in 2 Skyline documents was built with 3 raw files; 0 peptide Id files. Status: BiblioSpec library was not built with mass spec results.
31 May 2022 15:17:54,413 INFO : 'EColi_MPDS_HDDDA_Trap_WbE' (EColi_MPDS_HDDDA_Trap_WbE.blib) library in 1 Skyline documents was built with 3 raw files; 1 peptide Id files. Status: VALID
31 May 2022 15:17:54,413 INFO : 'MPDS_HDDDA_Transfer_PEAKS' (MPDS_HDDDA_transfer_PEAKS.blib) library in 2 Skyline documents was built with 3 raw files; 1 peptide Id files. Status: VALID
31 May 2022 15:17:54,413 INFO : 'EColi_MPDS_HDDDA_Transfer' (EColi_MPDS_HDDDA_Transfer.blib) library in 1 Skyline documents was built with 3 raw files; 1 peptide Id files. Status: VALID
31 May 2022 15:17:54,413 INFO : 'MPDS_UDMSE_PLGS_TI' (MPDS_UDMSE_PLGS_TI.blib) library in 2 Skyline documents was built with 3 raw files; 0 peptide Id files. Status: BiblioSpec library was not built with mass spec results.
31 May 2022 15:17:54,413 INFO : 'EColi_MPDS_seMSE_PLGS_TI' (EColi_MPDS_seMSE_PLGS_TI.blib) library in 1 Skyline documents was built with 3 raw files; 0 peptide Id files. Status: BiblioSpec library was not built with mass spec results.
31 May 2022 15:17:54,413 INFO : 'MPDS_HDMSE_PLGS_TI' (MPDS_HDMSE_PLGS_TI.blib) library in 2 Skyline documents was built with 3 raw files; 0 peptide Id files. Status: BiblioSpec library was not built with mass spec results.
31 May 2022 15:17:54,413 INFO : 'MPDS_seMSE_PLGS_TI' (MPDS_seMSE_PLGS_TI.blib) library in 2 Skyline documents was built with 3 raw files; 0 peptide Id files. Status: BiblioSpec library was not built with mass spec results.
31 May 2022 15:17:54,413 INFO : 'MPDS_HDDDA_Trap_WbE_PEAKS' (MPDS_HDDDA_Trap_WbE_PEAKS.blib) library in 2 Skyline documents was built with 3 raw files; 1 peptide Id files. Status: VALID
31 May 2022 15:17:54,414 INFO : Data validation is complete. Status is IncompleteMetadata
31 May 2022 15:17:54,414 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.PxDataValidationTask'