02 Apr 2021 14:40:55,286 INFO : Copying experiment "A Workflow Towards The Reproducible Identification and Quantitation of Protein Carbonylation Sites in Human Plasma" from folder /U of Leipzig - AG Bioanalytics/Carbonylation PTMs/A Workflow Towards The Reproducible Identification and Quantitation of Protein Carbonylation Sites in Human Plasma to /Panorama Public/2021/U of Leipzig AG Bioanalytics - A Workflow Towards The Reproducible Identification and Quantitation of Protein Carbonylation Sites in Human Plasma
02 Apr 2021 14:40:55,286 INFO : =======================================
02 Apr 2021 14:40:55,499 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
02 Apr 2021 14:40:55,500 INFO :
02 Apr 2021 14:40:55,500 INFO : Exporting experiment.
02 Apr 2021 14:44:15,124 INFO :
02 Apr 2021 14:44:15,124 INFO : Experiment export completed successfully.
02 Apr 2021 14:44:15,125 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
02 Apr 2021 14:44:15,201 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
02 Apr 2021 14:44:15,201 INFO :
02 Apr 2021 14:44:15,201 INFO : Importing experiment.
02 Apr 2021 14:44:15,208 INFO : Loading folder properties (folder type, settings and active modules)
02 Apr 2021 14:44:15,536 INFO : Done importing folder properties (folder type, settings and active modules)
02 Apr 2021 14:44:15,542 INFO : Loading grid views
02 Apr 2021 14:44:15,605 INFO : 1 custom view imported
02 Apr 2021 14:44:15,605 INFO : Done importing grid views
02 Apr 2021 14:44:15,611 INFO : Loading etl definitions
02 Apr 2021 14:44:15,616 INFO : Loading wikis
02 Apr 2021 14:44:15,874 INFO : 5 wikis imported
02 Apr 2021 14:44:15,875 INFO : Done importing wikis
02 Apr 2021 14:44:15,875 INFO : Starting to copy files
02 Apr 2021 14:46:02,913 INFO : Copied 70 files
02 Apr 2021 14:46:02,913 INFO : Ensuring exp.data rows exist for imported files
02 Apr 2021 14:46:04,572 INFO : Loading xar
02 Apr 2021 14:46:32,619 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8391:TargetedMS.ImportSkyZip'
02 Apr 2021 14:46:32,626 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8391:TargetedMS.ImportSkyZip.Core'
02 Apr 2021 14:46:32,631 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8391:TargetedMS.ImportSkyZip.Output'
02 Apr 2021 14:46:32,632 DEBUG: Protocol import complete
02 Apr 2021 14:46:32,665 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-8391:A+Workflow+Towards+The+Reproducible+Identification+and+Quantitation+of+Protein+Carbonylation+Sites+in+Human+Plasma'
02 Apr 2021 14:46:32,665 DEBUG: Experiment/Run group import complete
02 Apr 2021 14:46:32,743 DEBUG: Protocol action set import complete
02 Apr 2021 14:46:32,774 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8391:TargetedMS.ImportSkyZip'
02 Apr 2021 14:46:32,847 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8391:723c5b54-5982-1039-9674-3013bb9b91fd'
02 Apr 2021 14:46:32,859 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8391:723c5adc-5982-1039-9674-3013bb9b91fd'
02 Apr 2021 14:46:32,860 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8391:TargetedMS.ImportSkyZip.Core'
02 Apr 2021 14:46:32,868 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8391:TargetedMS.ImportSkyZip.Output'
02 Apr 2021 14:46:32,870 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8391:723c5c5e-5982-1039-9674-3013bb9b91fd'
02 Apr 2021 14:46:32,892 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8391:TargetedMS.ImportSkyZip'
02 Apr 2021 14:46:32,908 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8391:723c5215-5982-1039-9674-3013bb9b91fd'
02 Apr 2021 14:46:32,921 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8391:723c5114-5982-1039-9674-3013bb9b91fd'
02 Apr 2021 14:46:32,921 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8391:TargetedMS.ImportSkyZip.Core'
02 Apr 2021 14:46:32,940 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8391:TargetedMS.ImportSkyZip.Output'
02 Apr 2021 14:46:32,942 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8391:723c5336-5982-1039-9674-3013bb9b91fd'
02 Apr 2021 14:46:32,964 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8391:TargetedMS.ImportSkyZip'
02 Apr 2021 14:46:32,980 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8391:2c3cf5e1-58f7-1039-9674-3013bb9b91fd'
02 Apr 2021 14:46:32,991 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8391:2c3cf57f-58f7-1039-9674-3013bb9b91fd'
02 Apr 2021 14:46:32,991 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8391:TargetedMS.ImportSkyZip.Core'
02 Apr 2021 14:46:32,997 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8391:TargetedMS.ImportSkyZip.Output'
02 Apr 2021 14:46:32,999 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8391:2c3cf6fe-58f7-1039-9674-3013bb9b91fd'
02 Apr 2021 14:46:33,001 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Leipzig%20AG%20Bioanalytics%20-%20A%20Workflow%20Towards%20The%20Reproducible%20Identification%20and%20Quantitation%20of%20Protein%20Carbonylation%20Sites%20in%20Human%20Plasma_f30478e8-7629-1039-9674-3013bb9b91fd/_temp__2021-04-02_14-40-54/export/xar/experiments_and_runs.xar.exploded/Run102409/Plasma-OxHSA_2021-02-25_11-37-12/Plasma-OxHSA.skyd into the system
02 Apr 2021 14:46:33,004 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Leipzig%20AG%20Bioanalytics%20-%20A%20Workflow%20Towards%20The%20Reproducible%20Identification%20and%20Quantitation%20of%20Protein%20Carbonylation%20Sites%20in%20Human%20Plasma_f30478e8-7629-1039-9674-3013bb9b91fd/_temp__2021-04-02_14-40-54/export/xar/experiments_and_runs.xar.exploded/Run102409/Plasma-OxHSA_2021-02-25_11-37-12/Plasma-OxHSA.skyd into the system
02 Apr 2021 14:46:33,005 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Leipzig%20AG%20Bioanalytics%20-%20A%20Workflow%20Towards%20The%20Reproducible%20Identification%20and%20Quantitation%20of%20Protein%20Carbonylation%20Sites%20in%20Human%20Plasma_f30478e8-7629-1039-9674-3013bb9b91fd/_temp__2021-04-02_14-40-54/export/xar/experiments_and_runs.xar.exploded/Run102409/Plasma-OxHSA_2021-02-25_11-37-12.sky.zip into the system
02 Apr 2021 14:46:33,009 INFO : Starting import from Plasma-OxHSA_2021-02-25_11-37-12.sky.zip
02 Apr 2021 14:46:33,018 INFO : Starting to import Skyline document from Plasma-OxHSA_2021-02-25_11-37-12.sky.zip
02 Apr 2021 14:46:33,141 INFO : Expanding Human_proteome.protdb
02 Apr 2021 14:46:36,363 INFO : Expanding Plasma-OxHSA_enriched.imsdb
02 Apr 2021 14:46:36,364 INFO : Expanding ARP_Plasma_OxHSA_fix_cbmm_5perc_PepLevel.blib
02 Apr 2021 14:46:36,486 INFO : Expanding ARP_Plasma_OxHSA_fix_cbmm_5perc_PepLevel.redundant.blib
02 Apr 2021 14:46:37,822 INFO : Expanding Plasma-OxHSA.skyd
02 Apr 2021 14:46:39,235 INFO : Expanding Plasma-OxHSA.sky.view
02 Apr 2021 14:46:39,235 INFO : Expanding Plasma-OxHSA.sky
02 Apr 2021 14:46:39,263 INFO : Expanding Plasma-OxHSA.skyl
02 Apr 2021 14:46:39,277 INFO : 1% Done
02 Apr 2021 14:46:39,565 DEBUG: Starting to load chromatogram headers
02 Apr 2021 14:46:39,570 DEBUG: Done loading chromatogram headers
02 Apr 2021 14:46:40,326 INFO : Inserting peptides1
02 Apr 2021 14:46:40,579 INFO : 2% Done
02 Apr 2021 14:46:40,681 DEBUG: Total peptides inserted: 2
02 Apr 2021 14:46:40,750 INFO : Inserting sp|P02768|ALBU_HUMAN
02 Apr 2021 14:46:40,864 INFO : 3% Done
02 Apr 2021 14:46:41,059 INFO : 4% Done
02 Apr 2021 14:46:41,214 INFO : 5% Done
02 Apr 2021 14:46:41,395 INFO : 6% Done
02 Apr 2021 14:46:41,554 INFO : 7% Done
02 Apr 2021 14:46:41,850 INFO : 8% Done
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02 Apr 2021 14:46:43,859 INFO : 18% Done
02 Apr 2021 14:46:44,136 INFO : 19% Done
02 Apr 2021 14:46:44,375 INFO : 20% Done
02 Apr 2021 14:46:44,492 DEBUG: Inserted 50 peptides
02 Apr 2021 14:46:44,589 INFO : 21% Done
02 Apr 2021 14:46:44,821 INFO : 22% Done
02 Apr 2021 14:46:44,977 INFO : 23% Done
02 Apr 2021 14:46:45,220 INFO : 24% Done
02 Apr 2021 14:46:45,373 INFO : 25% Done
02 Apr 2021 14:46:45,687 INFO : 26% Done
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02 Apr 2021 14:46:47,362 INFO : 37% Done
02 Apr 2021 14:46:47,545 INFO : 38% Done
02 Apr 2021 14:46:47,697 INFO : 39% Done
02 Apr 2021 14:46:47,697 DEBUG: Inserted 100 peptides
02 Apr 2021 14:46:47,924 INFO : 40% Done
02 Apr 2021 14:46:48,030 INFO : 41% Done
02 Apr 2021 14:46:48,352 INFO : 42% Done
02 Apr 2021 14:46:48,520 INFO : 43% Done
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02 Apr 2021 14:46:49,030 INFO : 45% Done
02 Apr 2021 14:46:49,207 INFO : 46% Done
02 Apr 2021 14:46:49,352 INFO : 47% Done
02 Apr 2021 14:46:49,495 INFO : 48% Done
02 Apr 2021 14:46:49,644 INFO : 49% Done
02 Apr 2021 14:46:49,803 INFO : 50% Done
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02 Apr 2021 14:46:50,359 INFO : 52% Done
02 Apr 2021 14:46:50,517 INFO : 53% Done
02 Apr 2021 14:46:50,703 INFO : 54% Done
02 Apr 2021 14:46:50,945 INFO : 55% Done
02 Apr 2021 14:46:51,191 INFO : 56% Done
02 Apr 2021 14:46:51,374 INFO : 57% Done
02 Apr 2021 14:46:51,590 INFO : 58% Done
02 Apr 2021 14:46:51,591 DEBUG: Inserted 150 peptides
02 Apr 2021 14:46:51,790 INFO : 59% Done
02 Apr 2021 14:46:52,043 INFO : 60% Done
02 Apr 2021 14:46:52,198 INFO : 61% Done
02 Apr 2021 14:46:52,404 INFO : 62% Done
02 Apr 2021 14:46:52,549 INFO : 63% Done
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02 Apr 2021 14:46:52,901 INFO : 65% Done
02 Apr 2021 14:46:53,178 INFO : 66% Done
02 Apr 2021 14:46:53,354 INFO : 67% Done
02 Apr 2021 14:46:53,523 INFO : 68% Done
02 Apr 2021 14:46:53,720 INFO : 69% Done
02 Apr 2021 14:46:53,891 INFO : 70% Done
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02 Apr 2021 14:46:54,234 INFO : 72% Done
02 Apr 2021 14:46:54,404 INFO : 73% Done
02 Apr 2021 14:46:54,583 INFO : 74% Done
02 Apr 2021 14:46:55,058 INFO : 75% Done
02 Apr 2021 14:46:55,207 DEBUG: Inserted 200 peptides
02 Apr 2021 14:46:55,266 INFO : 76% Done
02 Apr 2021 14:46:55,465 INFO : 77% Done
02 Apr 2021 14:46:55,615 INFO : 78% Done
02 Apr 2021 14:46:55,825 INFO : 79% Done
02 Apr 2021 14:46:56,004 INFO : 80% Done
02 Apr 2021 14:46:56,190 INFO : 81% Done
02 Apr 2021 14:46:56,420 INFO : 82% Done
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02 Apr 2021 14:46:57,183 INFO : 85% Done
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02 Apr 2021 14:46:57,644 INFO : 87% Done
02 Apr 2021 14:46:57,761 INFO : 88% Done
02 Apr 2021 14:46:58,023 INFO : 89% Done
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02 Apr 2021 14:46:58,393 INFO : 91% Done
02 Apr 2021 14:46:58,566 INFO : 92% Done
02 Apr 2021 14:46:58,733 INFO : 93% Done
02 Apr 2021 14:46:58,883 INFO : 94% Done
02 Apr 2021 14:46:58,982 DEBUG: Inserted 250 peptides
02 Apr 2021 14:46:59,042 INFO : 95% Done
02 Apr 2021 14:46:59,230 INFO : 96% Done
02 Apr 2021 14:46:59,401 INFO : 97% Done
02 Apr 2021 14:46:59,455 DEBUG: Total peptides inserted: 257
02 Apr 2021 14:46:59,688 INFO : Inserting sp|P34810|CD68_HUMAN
02 Apr 2021 14:46:59,870 DEBUG: Total peptides inserted: 1
02 Apr 2021 14:46:59,944 INFO : Inserting sp|P02671|FIBA_HUMAN
02 Apr 2021 14:47:00,017 DEBUG: Total peptides inserted: 1
02 Apr 2021 14:47:00,119 INFO : Inserting sp|P0DOY2|IGLC2_HUMAN
02 Apr 2021 14:47:00,169 INFO : 98% Done
02 Apr 2021 14:47:00,222 DEBUG: Total peptides inserted: 1
02 Apr 2021 14:47:00,324 INFO : Inserting sp|Q66K66|TM198_HUMAN
02 Apr 2021 14:47:00,434 DEBUG: Total peptides inserted: 1
02 Apr 2021 14:47:00,436 INFO : Done parsing Skyline document.
02 Apr 2021 14:47:00,479 INFO : Creating and populating temp tables for Proportion values
02 Apr 2021 14:47:00,647 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
02 Apr 2021 14:47:01,451 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
02 Apr 2021 14:47:01,686 INFO : Cleaning up temp tables
02 Apr 2021 14:47:01,689 INFO : Completed import of Skyline document from Plasma-OxHSA_2021-02-25_11-37-12.sky.zip
02 Apr 2021 14:47:01,707 INFO : 100% Done
02 Apr 2021 14:47:01,713 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Leipzig%20AG%20Bioanalytics%20-%20A%20Workflow%20Towards%20The%20Reproducible%20Identification%20and%20Quantitation%20of%20Protein%20Carbonylation%20Sites%20in%20Human%20Plasma_f30478e8-7629-1039-9674-3013bb9b91fd/_temp__2021-04-02_14-40-54/export/xar/experiments_and_runs.xar.exploded/Run102409/Plasma-OxHSA_2021-02-25_11-37-12.sky.zip into the system
02 Apr 2021 14:47:01,713 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Leipzig%20AG%20Bioanalytics%20-%20A%20Workflow%20Towards%20The%20Reproducible%20Identification%20and%20Quantitation%20of%20Protein%20Carbonylation%20Sites%20in%20Human%20Plasma_f30478e8-7629-1039-9674-3013bb9b91fd/_temp__2021-04-02_14-40-54/export/xar/experiments_and_runs.xar.exploded/Run102408/ARP-OxHSA-PlasmaMatrix_DilSeries_2021-02-25_11-31-34/ARP-OxHSA-PlasmaMatrix_DilSeries.skyd into the system
02 Apr 2021 14:47:01,713 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Leipzig%20AG%20Bioanalytics%20-%20A%20Workflow%20Towards%20The%20Reproducible%20Identification%20and%20Quantitation%20of%20Protein%20Carbonylation%20Sites%20in%20Human%20Plasma_f30478e8-7629-1039-9674-3013bb9b91fd/_temp__2021-04-02_14-40-54/export/xar/experiments_and_runs.xar.exploded/Run102408/ARP-OxHSA-PlasmaMatrix_DilSeries_2021-02-25_11-31-34/ARP-OxHSA-PlasmaMatrix_DilSeries.skyd into the system
02 Apr 2021 14:47:01,714 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Leipzig%20AG%20Bioanalytics%20-%20A%20Workflow%20Towards%20The%20Reproducible%20Identification%20and%20Quantitation%20of%20Protein%20Carbonylation%20Sites%20in%20Human%20Plasma_f30478e8-7629-1039-9674-3013bb9b91fd/_temp__2021-04-02_14-40-54/export/xar/experiments_and_runs.xar.exploded/Run102408/ARP-OxHSA-PlasmaMatrix_DilSeries_2021-02-25_11-31-34.sky.zip into the system
02 Apr 2021 14:47:01,716 INFO : Starting import from ARP-OxHSA-PlasmaMatrix_DilSeries_2021-02-25_11-31-34.sky.zip
02 Apr 2021 14:47:01,719 INFO : Starting to import Skyline document from ARP-OxHSA-PlasmaMatrix_DilSeries_2021-02-25_11-31-34.sky.zip
02 Apr 2021 14:47:01,826 INFO : Expanding Human_proteome.protdb
02 Apr 2021 14:47:04,950 INFO : Expanding ARP-OxHSA_DilSeries_HDDDA.imsdb
02 Apr 2021 14:47:04,951 INFO : Expanding ARP_Plasma_OxHSA_fix_cbmm_5perc_PepLevel.blib
02 Apr 2021 14:47:05,072 INFO : Expanding ARP_Plasma_OxHSA_fix_cbmm_5perc_PepLevel.redundant.blib
02 Apr 2021 14:47:06,448 INFO : Expanding ARP-OxHSA-PlasmaMatrix_DilSeries.skyd
02 Apr 2021 14:47:09,003 INFO : Expanding ARP-OxHSA-PlasmaMatrix_DilSeries.sky.view
02 Apr 2021 14:47:09,004 INFO : Expanding ARP-OxHSA-PlasmaMatrix_DilSeries.sky
02 Apr 2021 14:47:09,040 INFO : Expanding ARP-OxHSA-PlasmaMatrix_DilSeries.skyl
02 Apr 2021 14:47:09,520 DEBUG: Starting to load chromatogram headers
02 Apr 2021 14:47:09,529 DEBUG: Done loading chromatogram headers
02 Apr 2021 14:47:09,770 INFO : Inserting Library Peptides
02 Apr 2021 14:47:09,777 INFO : 1% Done
02 Apr 2021 14:47:09,836 INFO : 2% Done
02 Apr 2021 14:47:09,910 DEBUG: Total peptides inserted: 2
02 Apr 2021 14:47:09,919 INFO : Inserting sp|P02768|ALBU_HUMAN
02 Apr 2021 14:47:10,140 INFO : 3% Done
02 Apr 2021 14:47:10,354 INFO : 4% Done
02 Apr 2021 14:47:10,591 INFO : 5% Done
02 Apr 2021 14:47:10,766 INFO : 6% Done
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02 Apr 2021 14:47:11,187 INFO : 8% Done
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02 Apr 2021 14:47:11,774 INFO : 10% Done
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02 Apr 2021 14:47:13,291 INFO : 19% Done
02 Apr 2021 14:47:13,389 INFO : 20% Done
02 Apr 2021 14:47:13,424 INFO : 21% Done
02 Apr 2021 14:47:13,424 DEBUG: Inserted 50 peptides
02 Apr 2021 14:47:13,561 INFO : 22% Done
02 Apr 2021 14:47:13,697 INFO : 23% Done
02 Apr 2021 14:47:13,759 INFO : 24% Done
02 Apr 2021 14:47:13,876 INFO : 25% Done
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02 Apr 2021 14:47:14,120 INFO : 27% Done
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02 Apr 2021 14:47:16,293 INFO : 40% Done
02 Apr 2021 14:47:16,527 INFO : 41% Done
02 Apr 2021 14:47:16,734 INFO : 42% Done
02 Apr 2021 14:47:16,734 DEBUG: Inserted 100 peptides
02 Apr 2021 14:47:16,992 INFO : 43% Done
02 Apr 2021 14:47:17,315 INFO : 44% Done
02 Apr 2021 14:47:17,541 INFO : 45% Done
02 Apr 2021 14:47:17,819 INFO : 46% Done
02 Apr 2021 14:47:18,031 INFO : 47% Done
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02 Apr 2021 14:47:21,314 INFO : 61% Done
02 Apr 2021 14:47:21,611 INFO : 62% Done
02 Apr 2021 14:47:21,760 DEBUG: Inserted 150 peptides
02 Apr 2021 14:47:21,848 INFO : 63% Done
02 Apr 2021 14:47:22,149 INFO : 64% Done
02 Apr 2021 14:47:22,345 INFO : 65% Done
02 Apr 2021 14:47:22,593 INFO : 66% Done
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02 Apr 2021 14:47:23,781 INFO : 70% Done
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02 Apr 2021 14:47:26,656 INFO : 81% Done
02 Apr 2021 14:47:26,808 INFO : 82% Done
02 Apr 2021 14:47:26,962 INFO : 83% Done
02 Apr 2021 14:47:27,029 DEBUG: Inserted 200 peptides
02 Apr 2021 14:47:27,214 INFO : 84% Done
02 Apr 2021 14:47:27,429 INFO : 85% Done
02 Apr 2021 14:47:27,638 INFO : 86% Done
02 Apr 2021 14:47:27,898 INFO : 87% Done
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02 Apr 2021 14:47:30,312 INFO : 97% Done
02 Apr 2021 14:47:30,585 INFO : 98% Done
02 Apr 2021 14:47:30,723 DEBUG: Total peptides inserted: 239
02 Apr 2021 14:47:30,725 INFO : Done parsing Skyline document.
02 Apr 2021 14:47:30,850 INFO : Creating and populating temp tables for Proportion values
02 Apr 2021 14:47:31,015 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
02 Apr 2021 14:47:32,344 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
02 Apr 2021 14:47:33,095 INFO : Cleaning up temp tables
02 Apr 2021 14:47:33,687 INFO : Completed import of Skyline document from ARP-OxHSA-PlasmaMatrix_DilSeries_2021-02-25_11-31-34.sky.zip
02 Apr 2021 14:47:33,696 INFO : 100% Done
02 Apr 2021 14:47:33,709 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Leipzig%20AG%20Bioanalytics%20-%20A%20Workflow%20Towards%20The%20Reproducible%20Identification%20and%20Quantitation%20of%20Protein%20Carbonylation%20Sites%20in%20Human%20Plasma_f30478e8-7629-1039-9674-3013bb9b91fd/_temp__2021-04-02_14-40-54/export/xar/experiments_and_runs.xar.exploded/Run102408/ARP-OxHSA-PlasmaMatrix_DilSeries_2021-02-25_11-31-34.sky.zip into the system
02 Apr 2021 14:47:33,709 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Leipzig%20AG%20Bioanalytics%20-%20A%20Workflow%20Towards%20The%20Reproducible%20Identification%20and%20Quantitation%20of%20Protein%20Carbonylation%20Sites%20in%20Human%20Plasma_f30478e8-7629-1039-9674-3013bb9b91fd/_temp__2021-04-02_14-40-54/export/xar/experiments_and_runs.xar.exploded/Run102360/ARP_Plasma_0.2_vs_2.0_mg_2021-02-24_18-55-48/ARP_Plasma_0.2_vs_2.0_mg.skyd into the system
02 Apr 2021 14:47:33,711 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Leipzig%20AG%20Bioanalytics%20-%20A%20Workflow%20Towards%20The%20Reproducible%20Identification%20and%20Quantitation%20of%20Protein%20Carbonylation%20Sites%20in%20Human%20Plasma_f30478e8-7629-1039-9674-3013bb9b91fd/_temp__2021-04-02_14-40-54/export/xar/experiments_and_runs.xar.exploded/Run102360/ARP_Plasma_0.2_vs_2.0_mg_2021-02-24_18-55-48/ARP_Plasma_0.2_vs_2.0_mg.skyd into the system
02 Apr 2021 14:47:33,711 DEBUG: Trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Leipzig%20AG%20Bioanalytics%20-%20A%20Workflow%20Towards%20The%20Reproducible%20Identification%20and%20Quantitation%20of%20Protein%20Carbonylation%20Sites%20in%20Human%20Plasma_f30478e8-7629-1039-9674-3013bb9b91fd/_temp__2021-04-02_14-40-54/export/xar/experiments_and_runs.xar.exploded/Run102360/ARP_Plasma_0.2_vs_2.0_mg_2021-02-24_18-55-48.sky.zip into the system
02 Apr 2021 14:47:33,716 INFO : Starting import from ARP_Plasma_0.2_vs_2.0_mg_2021-02-24_18-55-48.sky.zip
02 Apr 2021 14:47:33,724 INFO : Starting to import Skyline document from ARP_Plasma_0.2_vs_2.0_mg_2021-02-24_18-55-48.sky.zip
02 Apr 2021 14:47:33,914 INFO : Expanding Human_proteome.protdb
02 Apr 2021 14:47:37,539 INFO : Expanding ARP-Plasma_enriched.imsdb
02 Apr 2021 14:47:37,539 INFO : Expanding ARP_Plasma_200vs2000ug_fixed_cbmm_5perc_PepLevel.blib
02 Apr 2021 14:47:37,659 INFO : Expanding ARP_Plasma_200vs2000ug_fixed_cbmm_5perc_PepLevel.redundant.blib
02 Apr 2021 14:47:38,881 INFO : Expanding ARP_Plasma_0.2_vs_2.0_mg.skyd
02 Apr 2021 14:47:41,714 INFO : Expanding ARP_Plasma_0.2_vs_2.0_mg.sky.view
02 Apr 2021 14:47:41,714 INFO : Expanding ARP_Plasma_0.2_vs_2.0_mg.sky
02 Apr 2021 14:47:41,741 INFO : Expanding ARP_Plasma_0.2_vs_2.0_mg.skyl
02 Apr 2021 14:47:41,758 INFO : 1% Done
02 Apr 2021 14:47:42,182 DEBUG: Starting to load chromatogram headers
02 Apr 2021 14:47:42,190 DEBUG: Done loading chromatogram headers
02 Apr 2021 14:47:42,584 INFO : Inserting sp|P02787|TRFE_HUMAN
02 Apr 2021 14:47:42,840 INFO : 2% Done
02 Apr 2021 14:47:43,165 DEBUG: Total peptides inserted: 9
02 Apr 2021 14:47:43,251 INFO : Inserting sp|P01024|CO3_HUMAN
02 Apr 2021 14:47:43,286 INFO : 3% Done
02 Apr 2021 14:47:43,557 INFO : 4% Done
02 Apr 2021 14:47:43,680 DEBUG: Total peptides inserted: 7
02 Apr 2021 14:47:43,751 INFO : Inserting sp|P0C0L5|CO4B_HUMAN
02 Apr 2021 14:47:43,904 DEBUG: Total peptides inserted: 2
02 Apr 2021 14:47:43,942 INFO : Inserting sp|P02675|FIBB_HUMAN
02 Apr 2021 14:47:43,961 INFO : 5% Done
02 Apr 2021 14:47:44,359 INFO : 6% Done
02 Apr 2021 14:47:44,672 INFO : 7% Done
02 Apr 2021 14:47:44,721 DEBUG: Total peptides inserted: 11
02 Apr 2021 14:47:44,791 INFO : Inserting sp|P04196|HRG_HUMAN
02 Apr 2021 14:47:44,992 DEBUG: Total peptides inserted: 2
02 Apr 2021 14:47:45,042 INFO : Inserting sp|P01859|IGHG2_HUMAN
02 Apr 2021 14:47:45,209 INFO : 8% Done
02 Apr 2021 14:47:45,493 INFO : 9% Done
02 Apr 2021 14:47:45,658 DEBUG: Total peptides inserted: 8
02 Apr 2021 14:47:45,685 INFO : Inserting sp|P01860|IGHG3_HUMAN
02 Apr 2021 14:47:45,778 INFO : 10% Done
02 Apr 2021 14:47:45,900 DEBUG: Total peptides inserted: 4
02 Apr 2021 14:47:45,907 INFO : Inserting sp|P02768|ALBU_HUMAN
02 Apr 2021 14:47:46,050 INFO : 11% Done
02 Apr 2021 14:47:46,231 INFO : 12% Done
02 Apr 2021 14:47:46,448 INFO : 13% Done
02 Apr 2021 14:47:46,606 INFO : 14% Done
02 Apr 2021 14:47:46,825 INFO : 15% Done
02 Apr 2021 14:47:46,955 INFO : 16% Done
02 Apr 2021 14:47:47,201 INFO : 17% Done
02 Apr 2021 14:47:47,408 INFO : 18% Done
02 Apr 2021 14:47:47,826 INFO : 19% Done
02 Apr 2021 14:47:48,004 INFO : 20% Done
02 Apr 2021 14:47:48,241 INFO : 21% Done
02 Apr 2021 14:47:48,374 INFO : 22% Done
02 Apr 2021 14:47:48,670 INFO : 23% Done
02 Apr 2021 14:47:48,670 DEBUG: Inserted 50 peptides
02 Apr 2021 14:47:49,051 INFO : 24% Done
02 Apr 2021 14:47:49,299 INFO : 25% Done
02 Apr 2021 14:47:49,764 INFO : 26% Done
02 Apr 2021 14:47:49,929 INFO : 27% Done
02 Apr 2021 14:47:50,127 INFO : 28% Done
02 Apr 2021 14:47:50,264 INFO : 29% Done
02 Apr 2021 14:47:50,416 INFO : 30% Done
02 Apr 2021 14:47:50,657 INFO : 31% Done
02 Apr 2021 14:47:50,842 INFO : 32% Done
02 Apr 2021 14:47:51,057 INFO : 33% Done
02 Apr 2021 14:47:51,350 DEBUG: Inserted 100 peptides
02 Apr 2021 14:47:51,397 INFO : 34% Done
02 Apr 2021 14:47:51,599 INFO : 35% Done
02 Apr 2021 14:47:51,824 INFO : 36% Done
02 Apr 2021 14:47:52,036 INFO : 37% Done
02 Apr 2021 14:47:52,334 INFO : 38% Done
02 Apr 2021 14:47:52,582 INFO : 39% Done
02 Apr 2021 14:47:52,779 INFO : 40% Done
02 Apr 2021 14:47:53,037 INFO : 41% Done
02 Apr 2021 14:47:53,297 INFO : 42% Done
02 Apr 2021 14:47:53,630 INFO : 43% Done
02 Apr 2021 14:47:53,984 INFO : 44% Done
02 Apr 2021 14:47:54,266 INFO : 45% Done
02 Apr 2021 14:47:54,460 INFO : 46% Done
02 Apr 2021 14:47:54,544 DEBUG: Inserted 150 peptides
02 Apr 2021 14:47:54,694 INFO : 47% Done
02 Apr 2021 14:47:54,853 INFO : 48% Done
02 Apr 2021 14:47:55,099 INFO : 49% Done
02 Apr 2021 14:47:55,379 INFO : 50% Done
02 Apr 2021 14:47:55,626 INFO : 51% Done
02 Apr 2021 14:47:55,899 INFO : 52% Done
02 Apr 2021 14:47:56,188 INFO : 53% Done
02 Apr 2021 14:47:56,468 INFO : 54% Done
02 Apr 2021 14:47:56,715 INFO : 55% Done
02 Apr 2021 14:47:56,945 INFO : 56% Done
02 Apr 2021 14:47:57,184 INFO : 57% Done
02 Apr 2021 14:47:57,427 INFO : 58% Done
02 Apr 2021 14:47:57,625 DEBUG: Inserted 200 peptides
02 Apr 2021 14:47:57,680 INFO : 59% Done
02 Apr 2021 14:47:57,831 INFO : 60% Done
02 Apr 2021 14:47:58,145 INFO : 61% Done
02 Apr 2021 14:47:58,381 INFO : 62% Done
02 Apr 2021 14:47:58,622 INFO : 63% Done
02 Apr 2021 14:47:58,796 INFO : 64% Done
02 Apr 2021 14:47:59,048 INFO : 65% Done
02 Apr 2021 14:47:59,256 INFO : 66% Done
02 Apr 2021 14:47:59,471 INFO : 67% Done
02 Apr 2021 14:47:59,632 INFO : 68% Done
02 Apr 2021 14:47:59,804 INFO : 69% Done
02 Apr 2021 14:47:59,967 INFO : 70% Done
02 Apr 2021 14:48:00,103 INFO : 71% Done
02 Apr 2021 14:48:00,103 DEBUG: Inserted 250 peptides
02 Apr 2021 14:48:00,228 INFO : 72% Done
02 Apr 2021 14:48:00,464 INFO : 73% Done
02 Apr 2021 14:48:00,681 INFO : 74% Done
02 Apr 2021 14:48:01,121 INFO : 75% Done
02 Apr 2021 14:48:01,363 INFO : 76% Done
02 Apr 2021 14:48:01,609 INFO : 77% Done
02 Apr 2021 14:48:01,807 INFO : 78% Done
02 Apr 2021 14:48:02,121 INFO : 79% Done
02 Apr 2021 14:48:02,359 INFO : 80% Done
02 Apr 2021 14:48:02,444 DEBUG: Total peptides inserted: 289
02 Apr 2021 14:48:02,487 INFO : Inserting sp|A0A0C4DH55|KVD07_HUMAN
02 Apr 2021 14:48:02,576 DEBUG: Total peptides inserted: 1
02 Apr 2021 14:48:02,690 INFO : Inserting sp|O14524|NEMP1_HUMAN
02 Apr 2021 14:48:02,798 DEBUG: Total peptides inserted: 1
02 Apr 2021 14:48:02,864 INFO : Inserting sp|P00450|CERU_HUMAN
02 Apr 2021 14:48:02,889 INFO : 81% Done
02 Apr 2021 14:48:02,962 DEBUG: Total peptides inserted: 1
02 Apr 2021 14:48:03,031 INFO : Inserting sp|P00751|CFAB_HUMAN
02 Apr 2021 14:48:03,116 DEBUG: Total peptides inserted: 1
02 Apr 2021 14:48:03,178 INFO : Inserting sp|P01009|A1AT_HUMAN
02 Apr 2021 14:48:03,405 INFO : 82% Done
02 Apr 2021 14:48:03,680 DEBUG: Total peptides inserted: 8
02 Apr 2021 14:48:03,729 INFO : Inserting sp|P01011|AACT_HUMAN
02 Apr 2021 14:48:03,766 INFO : 83% Done
02 Apr 2021 14:48:03,818 DEBUG: Total peptides inserted: 1
02 Apr 2021 14:48:03,883 INFO : Inserting sp|P01023|A2MG_HUMAN
02 Apr 2021 14:48:03,986 DEBUG: Total peptides inserted: 1
02 Apr 2021 14:48:04,007 INFO : Inserting sp|P01861|IGHG4_HUMAN
02 Apr 2021 14:48:04,095 DEBUG: Total peptides inserted: 1
02 Apr 2021 14:48:04,134 INFO : Inserting sp|P01871|IGHM_HUMAN
02 Apr 2021 14:48:04,219 DEBUG: Total peptides inserted: 1
02 Apr 2021 14:48:04,245 INFO : Inserting sp|P01876|IGHA1_HUMAN
02 Apr 2021 14:48:04,331 INFO : 84% Done
02 Apr 2021 14:48:04,429 DEBUG: Total peptides inserted: 3
02 Apr 2021 14:48:04,483 INFO : Inserting sp|P02647|APOA1_HUMAN
02 Apr 2021 14:48:04,643 INFO : 85% Done
02 Apr 2021 14:48:04,804 INFO : 86% Done
02 Apr 2021 14:48:04,837 DEBUG: Total peptides inserted: 9
02 Apr 2021 14:48:04,850 INFO : Inserting sp|P02652|APOA2_HUMAN
02 Apr 2021 14:48:04,999 INFO : 87% Done
02 Apr 2021 14:48:05,103 DEBUG: Total peptides inserted: 5
02 Apr 2021 14:48:05,156 INFO : Inserting sp|P02765|FETUA_HUMAN
02 Apr 2021 14:48:05,241 DEBUG: Total peptides inserted: 1
02 Apr 2021 14:48:05,315 INFO : Inserting sp|P02790|HEMO_HUMAN
02 Apr 2021 14:48:05,428 DEBUG: Total peptides inserted: 1
02 Apr 2021 14:48:05,473 INFO : Inserting sp|P0DOX6|IGM_HUMAN
02 Apr 2021 14:48:05,562 DEBUG: Total peptides inserted: 1
02 Apr 2021 14:48:05,638 INFO : Inserting sp|P19823|ITIH2_HUMAN
02 Apr 2021 14:48:05,685 INFO : 88% Done
02 Apr 2021 14:48:05,763 DEBUG: Total peptides inserted: 1
02 Apr 2021 14:48:05,827 INFO : Inserting sp|P33032|MC5R_HUMAN
02 Apr 2021 14:48:05,887 DEBUG: Total peptides inserted: 1
02 Apr 2021 14:48:05,934 INFO : Inserting sp|Q14624|ITIH4_HUMAN
02 Apr 2021 14:48:06,030 DEBUG: Total peptides inserted: 1
02 Apr 2021 14:48:06,104 INFO : Inserting sp|Q8N271|PROM2_HUMAN
02 Apr 2021 14:48:06,187 DEBUG: Total peptides inserted: 1
02 Apr 2021 14:48:06,321 INFO : Inserting sp|Q92529|SHC3_HUMAN
02 Apr 2021 14:48:06,380 INFO : Inserting sp|P0DOX7|IGK_HUMAN
02 Apr 2021 14:48:06,464 INFO : 89% Done
02 Apr 2021 14:48:06,694 INFO : 90% Done
02 Apr 2021 14:48:06,859 DEBUG: Total peptides inserted: 6
02 Apr 2021 14:48:06,882 INFO : Inserting sp|P0DOX8|IGL1_HUMAN
02 Apr 2021 14:48:06,964 INFO : 91% Done
02 Apr 2021 14:48:07,209 INFO : 92% Done
02 Apr 2021 14:48:07,289 DEBUG: Total peptides inserted: 6
02 Apr 2021 14:48:07,297 INFO : Inserting sp|P02671|FIBA_HUMAN
02 Apr 2021 14:48:07,535 INFO : 93% Done
02 Apr 2021 14:48:07,695 DEBUG: Total peptides inserted: 7
02 Apr 2021 14:48:07,733 INFO : Inserting sp|P02679|FIBG_HUMAN
02 Apr 2021 14:48:07,917 INFO : 94% Done
02 Apr 2021 14:48:08,047 DEBUG: Total peptides inserted: 3
02 Apr 2021 14:48:08,056 INFO : Inserting sp|P0DOY2|IGLC2_HUMAN
02 Apr 2021 14:48:08,194 DEBUG: Total peptides inserted: 2
02 Apr 2021 14:48:08,240 INFO : Inserting sp|P00739|HPTR_HUMAN
02 Apr 2021 14:48:08,313 INFO : 95% Done
02 Apr 2021 14:48:08,606 DEBUG: Total peptides inserted: 4
02 Apr 2021 14:48:08,640 INFO : Inserting sp|P01857|IGHG1_HUMAN
02 Apr 2021 14:48:08,665 INFO : 96% Done
02 Apr 2021 14:48:08,879 DEBUG: Total peptides inserted: 4
02 Apr 2021 14:48:08,937 INFO : Inserting sp|O43143|DHX15_HUMAN
02 Apr 2021 14:48:09,020 DEBUG: Total peptides inserted: 1
02 Apr 2021 14:48:09,127 INFO : Inserting sp|O75747|P3C2G_HUMAN
02 Apr 2021 14:48:09,161 INFO : 97% Done
02 Apr 2021 14:48:09,211 DEBUG: Total peptides inserted: 1
02 Apr 2021 14:48:09,234 INFO : Inserting sp|P00738|HPT_HUMAN
02 Apr 2021 14:48:09,405 INFO : 98% Done
02 Apr 2021 14:48:09,443 DEBUG: Total peptides inserted: 4
02 Apr 2021 14:48:09,495 INFO : Inserting sp|P02766|TTHY_HUMAN
02 Apr 2021 14:48:09,586 DEBUG: Total peptides inserted: 1
02 Apr 2021 14:48:09,593 INFO : Inserting sp|Q66K66|TM198_HUMAN
02 Apr 2021 14:48:09,642 DEBUG: Total peptides inserted: 1
02 Apr 2021 14:48:09,644 INFO : Done parsing Skyline document.
02 Apr 2021 14:48:09,710 INFO : Creating and populating temp tables for Proportion values
02 Apr 2021 14:48:09,883 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
02 Apr 2021 14:48:11,402 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
02 Apr 2021 14:48:11,769 INFO : Cleaning up temp tables
02 Apr 2021 14:48:12,206 INFO : Completed import of Skyline document from ARP_Plasma_0.2_vs_2.0_mg_2021-02-24_18-55-48.sky.zip
02 Apr 2021 14:48:12,214 INFO : 100% Done
02 Apr 2021 14:48:12,225 DEBUG: Finished trying to load data file file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Leipzig%20AG%20Bioanalytics%20-%20A%20Workflow%20Towards%20The%20Reproducible%20Identification%20and%20Quantitation%20of%20Protein%20Carbonylation%20Sites%20in%20Human%20Plasma_f30478e8-7629-1039-9674-3013bb9b91fd/_temp__2021-04-02_14-40-54/export/xar/experiments_and_runs.xar.exploded/Run102360/ARP_Plasma_0.2_vs_2.0_mg_2021-02-24_18-55-48.sky.zip into the system
02 Apr 2021 14:48:12,249 INFO : Done importing xar
02 Apr 2021 14:48:12,253 INFO : Loading pages and webpart properties
02 Apr 2021 14:48:12,457 INFO : Done importing pages and webpart properties
02 Apr 2021 14:48:12,457 INFO :
02 Apr 2021 14:48:12,457 INFO : Experiment import completed successfully.
02 Apr 2021 14:48:12,458 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
02 Apr 2021 14:48:12,558 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
02 Apr 2021 14:48:12,558 INFO :
02 Apr 2021 14:48:12,558 INFO : Finishing up experiment copy.
02 Apr 2021 14:48:12,561 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
02 Apr 2021 14:48:12,717 INFO : Updating access URL to point to the new copy of the data.
02 Apr 2021 14:48:12,845 INFO : Setting the 'copied' timestamp and journalExperimentId on the JournalExperiment table.
02 Apr 2021 14:48:12,862 INFO : Removing copy permissions given to journal.
02 Apr 2021 14:48:12,924 INFO : Adding read permissions to all users that are folder admins in the source container.
02 Apr 2021 14:48:12,943 INFO : Setting the TargetedMS folder type to 'Experimental Data'
02 Apr 2021 14:48:12,952 INFO : Updating the 'Raw Data' tab configuration
02 Apr 2021 14:48:12,956 INFO : Updating dataFileUrls for run ARP_Plasma_0.2_vs_2.0_mg_2021-02-24_18-55-48.sky.zip; targetedms run ID 107407
02 Apr 2021 14:48:12,956 INFO : Updating dataFileUrl...
02 Apr 2021 14:48:12,956 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Leipzig%20AG%20Bioanalytics%20-%20A%20Workflow%20Towards%20The%20Reproducible%20Identification%20and%20Quantitation%20of%20Protein%20Carbonylation%20Sites%20in%20Human%20Plasma_f30478e8-7629-1039-9674-3013bb9b91fd/_temp__2021-04-02_14-40-54/export/xar/experiments_and_runs.xar.exploded/Run102360/ARP_Plasma_0.2_vs_2.0_mg_2021-02-24_18-55-48.sky.zip
02 Apr 2021 14:48:12,957 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/U%20of%20Leipzig%20AG%20Bioanalytics%20-%20A%20Workflow%20Towards%20The%20Reproducible%20Identification%20and%20Quantitation%20of%20Protein%20Carbonylation%20Sites%20in%20Human%20Plasma/@files/ARP_Plasma_0.2_vs_2.0_mg_2021-02-24_18-55-48.sky.zip
02 Apr 2021 14:48:12,960 INFO : Updating dataFileUrl...
02 Apr 2021 14:48:12,960 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Leipzig%20AG%20Bioanalytics%20-%20A%20Workflow%20Towards%20The%20Reproducible%20Identification%20and%20Quantitation%20of%20Protein%20Carbonylation%20Sites%20in%20Human%20Plasma_f30478e8-7629-1039-9674-3013bb9b91fd/_temp__2021-04-02_14-40-54/export/xar/experiments_and_runs.xar.exploded/Run102360/ARP_Plasma_0.2_vs_2.0_mg_2021-02-24_18-55-48/ARP_Plasma_0.2_vs_2.0_mg.skyd
02 Apr 2021 14:48:12,960 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/U%20of%20Leipzig%20AG%20Bioanalytics%20-%20A%20Workflow%20Towards%20The%20Reproducible%20Identification%20and%20Quantitation%20of%20Protein%20Carbonylation%20Sites%20in%20Human%20Plasma/@files/ARP_Plasma_0.2_vs_2.0_mg_2021-02-24_18-55-48/ARP_Plasma_0.2_vs_2.0_mg.skyd
02 Apr 2021 14:48:12,964 INFO : Updating dataFileUrls for run ARP-OxHSA-PlasmaMatrix_DilSeries_2021-02-25_11-31-34.sky.zip; targetedms run ID 107406
02 Apr 2021 14:48:12,965 INFO : Updating dataFileUrl...
02 Apr 2021 14:48:12,965 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Leipzig%20AG%20Bioanalytics%20-%20A%20Workflow%20Towards%20The%20Reproducible%20Identification%20and%20Quantitation%20of%20Protein%20Carbonylation%20Sites%20in%20Human%20Plasma_f30478e8-7629-1039-9674-3013bb9b91fd/_temp__2021-04-02_14-40-54/export/xar/experiments_and_runs.xar.exploded/Run102408/ARP-OxHSA-PlasmaMatrix_DilSeries_2021-02-25_11-31-34.sky.zip
02 Apr 2021 14:48:12,965 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/U%20of%20Leipzig%20AG%20Bioanalytics%20-%20A%20Workflow%20Towards%20The%20Reproducible%20Identification%20and%20Quantitation%20of%20Protein%20Carbonylation%20Sites%20in%20Human%20Plasma/@files/ARP-OxHSA-PlasmaMatrix_DilSeries_2021-02-25_11-31-34.sky.zip
02 Apr 2021 14:48:12,968 INFO : Updating dataFileUrl...
02 Apr 2021 14:48:12,968 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Leipzig%20AG%20Bioanalytics%20-%20A%20Workflow%20Towards%20The%20Reproducible%20Identification%20and%20Quantitation%20of%20Protein%20Carbonylation%20Sites%20in%20Human%20Plasma_f30478e8-7629-1039-9674-3013bb9b91fd/_temp__2021-04-02_14-40-54/export/xar/experiments_and_runs.xar.exploded/Run102408/ARP-OxHSA-PlasmaMatrix_DilSeries_2021-02-25_11-31-34/ARP-OxHSA-PlasmaMatrix_DilSeries.skyd
02 Apr 2021 14:48:12,968 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/U%20of%20Leipzig%20AG%20Bioanalytics%20-%20A%20Workflow%20Towards%20The%20Reproducible%20Identification%20and%20Quantitation%20of%20Protein%20Carbonylation%20Sites%20in%20Human%20Plasma/@files/ARP-OxHSA-PlasmaMatrix_DilSeries_2021-02-25_11-31-34/ARP-OxHSA-PlasmaMatrix_DilSeries.skyd
02 Apr 2021 14:48:12,972 INFO : Updating dataFileUrls for run Plasma-OxHSA_2021-02-25_11-37-12.sky.zip; targetedms run ID 107405
02 Apr 2021 14:48:12,973 INFO : Updating dataFileUrl...
02 Apr 2021 14:48:12,973 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Leipzig%20AG%20Bioanalytics%20-%20A%20Workflow%20Towards%20The%20Reproducible%20Identification%20and%20Quantitation%20of%20Protein%20Carbonylation%20Sites%20in%20Human%20Plasma_f30478e8-7629-1039-9674-3013bb9b91fd/_temp__2021-04-02_14-40-54/export/xar/experiments_and_runs.xar.exploded/Run102409/Plasma-OxHSA_2021-02-25_11-37-12/Plasma-OxHSA.skyd
02 Apr 2021 14:48:12,973 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/U%20of%20Leipzig%20AG%20Bioanalytics%20-%20A%20Workflow%20Towards%20The%20Reproducible%20Identification%20and%20Quantitation%20of%20Protein%20Carbonylation%20Sites%20in%20Human%20Plasma/@files/Plasma-OxHSA_2021-02-25_11-37-12/Plasma-OxHSA.skyd
02 Apr 2021 14:48:12,975 INFO : Updating dataFileUrl...
02 Apr 2021 14:48:12,975 INFO : from: file:///data/apache-tomcat/temp/Pipeline_temp/U%20of%20Leipzig%20AG%20Bioanalytics%20-%20A%20Workflow%20Towards%20The%20Reproducible%20Identification%20and%20Quantitation%20of%20Protein%20Carbonylation%20Sites%20in%20Human%20Plasma_f30478e8-7629-1039-9674-3013bb9b91fd/_temp__2021-04-02_14-40-54/export/xar/experiments_and_runs.xar.exploded/Run102409/Plasma-OxHSA_2021-02-25_11-37-12.sky.zip
02 Apr 2021 14:48:12,976 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/U%20of%20Leipzig%20AG%20Bioanalytics%20-%20A%20Workflow%20Towards%20The%20Reproducible%20Identification%20and%20Quantitation%20of%20Protein%20Carbonylation%20Sites%20in%20Human%20Plasma/@files/Plasma-OxHSA_2021-02-25_11-37-12.sky.zip
02 Apr 2021 14:48:12,978 INFO : Making folder public.
02 Apr 2021 14:48:13,012 INFO : Hiding the Data Pipeline tab.
02 Apr 2021 14:48:13,238 INFO : Emailing submitter.
02 Apr 2021 14:48:13,863 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'