16 Nov 2021 19:37:29,605 INFO : Copying experiment "A comprehensive LFQ benchmark dataset on modern day acquisition strategies in proteomics" from folder /U of Ghent - Pharma Biotech Lab/LFQBenchmark across Instrument Platforms - AutoQC to /Panorama Public/2021/U of Ghent  - LFQBenchmark across Instrument Platforms
16 Nov 2021 19:37:29,605 INFO : =======================================
16 Nov 2021 19:37:29,660 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
16 Nov 2021 19:37:29,661 INFO : 
16 Nov 2021 19:37:29,661 INFO : Exporting experiment.
16 Nov 2021 20:06:14,969 INFO : 
16 Nov 2021 20:06:14,969 INFO : Experiment export completed successfully.
16 Nov 2021 20:06:14,969 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
16 Nov 2021 20:07:51,622 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
16 Nov 2021 20:07:51,622 INFO : 
16 Nov 2021 20:07:51,623 INFO : Importing experiment.
16 Nov 2021 20:07:51,628 INFO : Loading folder properties (folder type, settings and active modules)
16 Nov 2021 20:07:51,687 INFO : Done importing folder properties (folder type, settings and active modules)
16 Nov 2021 20:07:51,690 INFO : Loading etl definitions
16 Nov 2021 20:07:51,692 INFO : Loading wikis
16 Nov 2021 20:07:51,695 INFO : 0 wikis imported
16 Nov 2021 20:07:51,695 INFO : Done importing wikis
16 Nov 2021 20:07:51,696 INFO : Starting to copy files
16 Nov 2021 20:07:51,696 INFO : Copied 0 files
16 Nov 2021 20:07:51,696 INFO : Ensuring exp.data rows exist for imported files
16 Nov 2021 20:07:51,715 INFO : Starting Sample Type and Data Class import
16 Nov 2021 20:07:51,716 INFO : No types XAR file to process.
16 Nov 2021 20:07:51,716 INFO : Finished importing Sample Types and Data Classes
16 Nov 2021 20:07:51,717 INFO : Loading xar
16 Nov 2021 20:07:51,733 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-9332:A+comprehensive+LFQ+benchmark+dataset+on+modern+day+acquisition+strategies+in+proteomics'
16 Nov 2021 20:07:51,733 DEBUG: Experiment/Run group import complete
16 Nov 2021 20:07:51,733 INFO : Done importing xar
16 Nov 2021 20:07:51,735 INFO : Loading pages and webpart properties
16 Nov 2021 20:07:51,801 INFO : Done importing pages and webpart properties
16 Nov 2021 20:07:51,803 INFO : Loading subfolders and container tabs
16 Nov 2021 20:07:51,852 INFO : New container created with inherited permissions for Orbitrap_QEHFX
16 Nov 2021 20:07:51,852 INFO : Loading folder archive for Orbitrap_QEHFX
16 Nov 2021 20:07:51,854 INFO : Loading folder properties (folder type, settings and active modules)
16 Nov 2021 20:07:51,901 INFO : Done importing folder properties (folder type, settings and active modules)
16 Nov 2021 20:07:51,903 INFO : Loading etl definitions
16 Nov 2021 20:07:51,904 INFO : Loading wikis
16 Nov 2021 20:07:51,905 INFO : 0 wikis imported
16 Nov 2021 20:07:51,905 INFO : Done importing wikis
16 Nov 2021 20:07:51,906 INFO : Starting to copy files
16 Nov 2021 20:10:10,593 INFO : 31 files copied, now copying 210317_AIF_AutoQC_01.raw
16 Nov 2021 20:11:15,810 INFO : 39 files copied, now copying AutoQC_Peptide_Selection_first5proteins.blib
16 Nov 2021 20:11:20,599 INFO : 44 files copied, now copying AutoQC_Peptide_Selection_first5proteins.blib
16 Nov 2021 20:11:21,827 INFO : Copied 49 files
16 Nov 2021 20:11:21,827 INFO : Ensuring exp.data rows exist for imported files
16 Nov 2021 20:11:22,015 INFO : Starting Sample Type and Data Class import
16 Nov 2021 20:11:22,015 INFO : No types XAR file to process.
16 Nov 2021 20:11:22,015 INFO : Finished importing Sample Types and Data Classes
16 Nov 2021 20:11:22,016 INFO : Loading xar
16 Nov 2021 20:11:22,438 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9333:TargetedMS.ImportSkyZip'
16 Nov 2021 20:11:22,440 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9333:TargetedMS.ImportSkyZip.Core'
16 Nov 2021 20:11:22,442 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9333:TargetedMS.ImportSkyZip.Output'
16 Nov 2021 20:11:22,442 DEBUG: Protocol import complete
16 Nov 2021 20:11:22,450 DEBUG: Protocol action set import complete
16 Nov 2021 20:11:22,460 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9333:TargetedMS.ImportSkyZip'
16 Nov 2021 20:11:22,472 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9333:70129f18-e18f-1039-a2b1-fea6ddf522ee'
16 Nov 2021 20:11:22,476 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9333:70129ee6-e18f-1039-a2b1-fea6ddf522ee'
16 Nov 2021 20:11:22,476 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9333:TargetedMS.ImportSkyZip.Core'
16 Nov 2021 20:11:22,479 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9333:TargetedMS.ImportSkyZip.Output'
16 Nov 2021 20:11:22,481 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9333:70129f64-e18f-1039-a2b1-fea6ddf522ee'
16 Nov 2021 20:11:22,481 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Ghent%20%20-%20LFQBenchmark%20across%20Instrument%20Platforms_b63ebd1c-2984-103a-bfdd-fea6ddf55ce4/_temp__2021-11-16_19-37-29/export/subfolders/Orbitrap_QEHFX/xar/experiments_and_runs.xar.exploded/Run115726/AutoQC_Peptide_Selection_first5proteins_2021-08-17_15-53-43/AutoQC_Peptide_Selection_first5proteins.skyd into the system
16 Nov 2021 20:11:22,482 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Ghent%20%20-%20LFQBenchmark%20across%20Instrument%20Platforms_b63ebd1c-2984-103a-bfdd-fea6ddf55ce4/_temp__2021-11-16_19-37-29/export/subfolders/Orbitrap_QEHFX/xar/experiments_and_runs.xar.exploded/Run115726/AutoQC_Peptide_Selection_first5proteins_2021-08-17_15-53-43/AutoQC_Peptide_Selection_first5proteins.skyd into the system
16 Nov 2021 20:11:22,482 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Ghent%20%20-%20LFQBenchmark%20across%20Instrument%20Platforms_b63ebd1c-2984-103a-bfdd-fea6ddf55ce4/_temp__2021-11-16_19-37-29/export/subfolders/Orbitrap_QEHFX/xar/experiments_and_runs.xar.exploded/Run115726/AutoQC_Peptide_Selection_first5proteins_2021-08-17_15-53-43.sky.zip into the system
16 Nov 2021 20:11:22,483 INFO : Starting import from AutoQC_Peptide_Selection_first5proteins_2021-08-17_15-53-43.sky.zip
16 Nov 2021 20:11:22,486 INFO : Starting to import Skyline document from AutoQC_Peptide_Selection_first5proteins_2021-08-17_15-53-43.sky.zip
16 Nov 2021 20:11:22,494 INFO : Expanding AutoQC_Peptide_Selection_first5proteins.blib
16 Nov 2021 20:11:22,572 INFO : Expanding AutoQC_Peptide_Selection_first5proteins.redundant.blib
16 Nov 2021 20:11:22,836 INFO : Expanding AutoQC_Peptide_Selection_first5proteins.skyd
16 Nov 2021 20:11:23,000 INFO : Expanding AutoQC_Peptide_Selection_first5proteins.sky
16 Nov 2021 20:11:23,010 INFO : Expanding AutoQC_Peptide_Selection_first5proteins.skyl
16 Nov 2021 20:11:23,020 INFO : 1% Done
16 Nov 2021 20:11:23,082 DEBUG: Starting to load chromatogram headers
16 Nov 2021 20:11:23,084 DEBUG: Done loading chromatogram headers
16 Nov 2021 20:11:23,137 INFO : Inserting sp|P0A853|TNAA_ECOLI
16 Nov 2021 20:11:23,143 INFO : 2% Done
16 Nov 2021 20:11:23,165 INFO : 4% Done
16 Nov 2021 20:11:23,183 INFO : 5% Done
16 Nov 2021 20:11:23,203 INFO : 7% Done
16 Nov 2021 20:11:23,222 INFO : 8% Done
16 Nov 2021 20:11:23,239 INFO : 10% Done
16 Nov 2021 20:11:23,259 INFO : 11% Done
16 Nov 2021 20:11:23,277 INFO : 13% Done
16 Nov 2021 20:11:23,295 INFO : 14% Done
16 Nov 2021 20:11:23,314 INFO : 16% Done
16 Nov 2021 20:11:23,331 INFO : 17% Done
16 Nov 2021 20:11:23,349 INFO : 18% Done
16 Nov 2021 20:11:23,368 INFO : 21% Done
16 Nov 2021 20:11:23,401 INFO : 24% Done
16 Nov 2021 20:11:23,432 INFO : 25% Done
16 Nov 2021 20:11:23,450 INFO : 26% Done
16 Nov 2021 20:11:23,468 INFO : 27% Done
16 Nov 2021 20:11:23,488 DEBUG: Total peptides inserted: 17
16 Nov 2021 20:11:23,493 INFO : Inserting sp|P0CE47|EFTU1_ECOLI
16 Nov 2021 20:11:23,500 INFO : 30% Done
16 Nov 2021 20:11:23,531 INFO : 31% Done
16 Nov 2021 20:11:23,550 INFO : 34% Done
16 Nov 2021 20:11:23,581 INFO : 36% Done
16 Nov 2021 20:11:23,601 INFO : 38% Done
16 Nov 2021 20:11:23,630 INFO : 40% Done
16 Nov 2021 20:11:23,649 INFO : 41% Done
16 Nov 2021 20:11:23,669 INFO : 43% Done
16 Nov 2021 20:11:23,692 INFO : 44% Done
16 Nov 2021 20:11:23,711 INFO : 46% Done
16 Nov 2021 20:11:23,727 DEBUG: Total peptides inserted: 10
16 Nov 2021 20:11:23,731 INFO : Inserting sp|P0A6F3|GLPK_ECOLI
16 Nov 2021 20:11:23,735 INFO : 47% Done
16 Nov 2021 20:11:23,755 INFO : 50% Done
16 Nov 2021 20:11:23,786 INFO : 53% Done
16 Nov 2021 20:11:23,824 INFO : 54% Done
16 Nov 2021 20:11:23,851 INFO : 57% Done
16 Nov 2021 20:11:23,880 INFO : 58% Done
16 Nov 2021 20:11:23,898 INFO : 60% Done
16 Nov 2021 20:11:23,916 INFO : 61% Done
16 Nov 2021 20:11:23,933 INFO : 63% Done
16 Nov 2021 20:11:23,950 INFO : 64% Done
16 Nov 2021 20:11:23,968 INFO : 65% Done
16 Nov 2021 20:11:23,982 DEBUG: Total peptides inserted: 11
16 Nov 2021 20:11:23,985 INFO : Inserting sp|P25553|ALDA_ECOLI
16 Nov 2021 20:11:23,989 INFO : 67% Done
16 Nov 2021 20:11:24,007 INFO : 68% Done
16 Nov 2021 20:11:24,025 INFO : 70% Done
16 Nov 2021 20:11:24,042 INFO : 71% Done
16 Nov 2021 20:11:24,060 INFO : 73% Done
16 Nov 2021 20:11:24,077 INFO : 74% Done
16 Nov 2021 20:11:24,095 INFO : 75% Done
16 Nov 2021 20:11:24,112 INFO : 76% Done
16 Nov 2021 20:11:24,129 INFO : 77% Done
16 Nov 2021 20:11:24,146 INFO : 79% Done
16 Nov 2021 20:11:24,160 DEBUG: Total peptides inserted: 10
16 Nov 2021 20:11:24,164 INFO : Inserting sp|P02925|RBSB_ECOLI
16 Nov 2021 20:11:24,168 INFO : 80% Done
16 Nov 2021 20:11:24,185 INFO : 82% Done
16 Nov 2021 20:11:24,201 INFO : 83% Done
16 Nov 2021 20:11:24,220 INFO : 86% Done
16 Nov 2021 20:11:24,247 INFO : 87% Done
16 Nov 2021 20:11:24,265 INFO : 90% Done
16 Nov 2021 20:11:24,293 INFO : 93% Done
16 Nov 2021 20:11:24,320 INFO : 94% Done
16 Nov 2021 20:11:24,338 INFO : 97% Done
16 Nov 2021 20:11:24,366 INFO : 98% Done
16 Nov 2021 20:11:24,383 DEBUG: Total peptides inserted: 10
16 Nov 2021 20:11:24,383 INFO : Done parsing Skyline document.
16 Nov 2021 20:11:24,414 INFO : Creating and populating temp tables for Proportion values
16 Nov 2021 20:11:24,439 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
16 Nov 2021 20:11:24,510 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
16 Nov 2021 20:11:24,552 INFO : Cleaning up temp tables
16 Nov 2021 20:11:24,750 INFO : Completed import of Skyline document from AutoQC_Peptide_Selection_first5proteins_2021-08-17_15-53-43.sky.zip
16 Nov 2021 20:11:24,753 INFO : 100% Done
16 Nov 2021 20:11:24,757 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Ghent%20%20-%20LFQBenchmark%20across%20Instrument%20Platforms_b63ebd1c-2984-103a-bfdd-fea6ddf55ce4/_temp__2021-11-16_19-37-29/export/subfolders/Orbitrap_QEHFX/xar/experiments_and_runs.xar.exploded/Run115726/AutoQC_Peptide_Selection_first5proteins_2021-08-17_15-53-43.sky.zip into the system
16 Nov 2021 20:11:24,762 INFO : Done importing xar
16 Nov 2021 20:11:24,764 INFO : Loading pages and webpart properties
16 Nov 2021 20:11:24,912 INFO : Done importing pages and webpart properties
16 Nov 2021 20:11:24,913 INFO : Done importing folder archive for Orbitrap_QEHFX
16 Nov 2021 20:11:24,951 INFO : New container created with inherited permissions for SynaptG2Si
16 Nov 2021 20:11:24,951 INFO : Loading folder archive for SynaptG2Si
16 Nov 2021 20:11:24,952 INFO : Loading folder properties (folder type, settings and active modules)
16 Nov 2021 20:11:24,997 INFO : Done importing folder properties (folder type, settings and active modules)
16 Nov 2021 20:11:24,999 INFO : Loading etl definitions
16 Nov 2021 20:11:25,000 INFO : Loading wikis
16 Nov 2021 20:11:25,001 INFO : 0 wikis imported
16 Nov 2021 20:11:25,001 INFO : Done importing wikis
16 Nov 2021 20:11:25,002 INFO : Starting to copy files
16 Nov 2021 20:13:37,417 INFO : 9 files copied, now copying LFQ_SynaptG2Si_HDDDA_AutoQCmicro_04.raw.zip
16 Nov 2021 20:16:03,557 INFO : 15 files copied, now copying LFQ_SynaptG2Si_UDMSE_AutoQCmicroUDMSE_AfterHDMSELFQ_07.raw.zip
16 Nov 2021 20:17:03,516 INFO : 17 files copied, now copying Synapt_G2Si.skyd
16 Nov 2021 20:17:04,784 INFO : 22 files copied, now copying Synapt_G2Si.skyd
16 Nov 2021 20:17:06,922 INFO : Copied 27 files
16 Nov 2021 20:17:06,922 INFO : Ensuring exp.data rows exist for imported files
16 Nov 2021 20:17:07,040 INFO : Starting Sample Type and Data Class import
16 Nov 2021 20:17:07,040 INFO : No types XAR file to process.
16 Nov 2021 20:17:07,041 INFO : Finished importing Sample Types and Data Classes
16 Nov 2021 20:17:07,042 INFO : Loading xar
16 Nov 2021 20:17:07,187 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9334:TargetedMS.ImportSkyZip'
16 Nov 2021 20:17:07,189 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9334:TargetedMS.ImportSkyZip.Core'
16 Nov 2021 20:17:07,194 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9334:TargetedMS.ImportSkyZip.Output'
16 Nov 2021 20:17:07,194 DEBUG: Protocol import complete
16 Nov 2021 20:17:07,203 DEBUG: Protocol action set import complete
16 Nov 2021 20:17:07,209 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9334:TargetedMS.ImportSkyZip'
16 Nov 2021 20:17:07,216 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9334:d53c7456-e18d-1039-a2b1-fea6ddf522ee'
16 Nov 2021 20:17:07,219 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9334:d53c7444-e18d-1039-a2b1-fea6ddf522ee'
16 Nov 2021 20:17:07,219 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9334:TargetedMS.ImportSkyZip.Core'
16 Nov 2021 20:17:07,222 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9334:TargetedMS.ImportSkyZip.Output'
16 Nov 2021 20:17:07,222 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9334:d53c749d-e18d-1039-a2b1-fea6ddf522ee'
16 Nov 2021 20:17:07,223 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Ghent%20%20-%20LFQBenchmark%20across%20Instrument%20Platforms_b63ebd1c-2984-103a-bfdd-fea6ddf55ce4/_temp__2021-11-16_19-37-29/export/subfolders/SynaptG2Si/xar/experiments_and_runs.xar.exploded/Run115722/Synapt_G2Si_2021-08-17_15-40-26/Synapt_G2Si.skyd into the system
16 Nov 2021 20:17:07,223 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Ghent%20%20-%20LFQBenchmark%20across%20Instrument%20Platforms_b63ebd1c-2984-103a-bfdd-fea6ddf55ce4/_temp__2021-11-16_19-37-29/export/subfolders/SynaptG2Si/xar/experiments_and_runs.xar.exploded/Run115722/Synapt_G2Si_2021-08-17_15-40-26/Synapt_G2Si.skyd into the system
16 Nov 2021 20:17:07,223 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Ghent%20%20-%20LFQBenchmark%20across%20Instrument%20Platforms_b63ebd1c-2984-103a-bfdd-fea6ddf55ce4/_temp__2021-11-16_19-37-29/export/subfolders/SynaptG2Si/xar/experiments_and_runs.xar.exploded/Run115722/Synapt_G2Si_2021-08-17_15-40-26.sky.zip into the system
16 Nov 2021 20:17:07,224 INFO : Starting import from Synapt_G2Si_2021-08-17_15-40-26.sky.zip
16 Nov 2021 20:17:07,227 INFO : Starting to import Skyline document from Synapt_G2Si_2021-08-17_15-40-26.sky.zip
16 Nov 2021 20:17:07,229 INFO : Expanding Synapt_G2Si.blib
16 Nov 2021 20:17:07,264 INFO : Expanding Synapt_G2Si.redundant.blib
16 Nov 2021 20:17:07,357 INFO : Expanding Synapt_G2Si.skyd
16 Nov 2021 20:17:07,396 INFO : Expanding Synapt_G2Si.sky
16 Nov 2021 20:17:07,401 INFO : Expanding Synapt_G2Si.skyl
16 Nov 2021 20:17:07,408 INFO : 1% Done
16 Nov 2021 20:17:07,436 DEBUG: Starting to load chromatogram headers
16 Nov 2021 20:17:07,437 DEBUG: Done loading chromatogram headers
16 Nov 2021 20:17:07,481 INFO : Inserting sp|P0A6F3|GLPK_ECOLI
16 Nov 2021 20:17:07,485 INFO : 3% Done
16 Nov 2021 20:17:07,501 INFO : 5% Done
16 Nov 2021 20:17:07,520 INFO : 7% Done
16 Nov 2021 20:17:07,531 INFO : 9% Done
16 Nov 2021 20:17:07,543 INFO : 12% Done
16 Nov 2021 20:17:07,561 INFO : 13% Done
16 Nov 2021 20:17:07,571 INFO : 15% Done
16 Nov 2021 20:17:07,582 INFO : 16% Done
16 Nov 2021 20:17:07,592 INFO : 18% Done
16 Nov 2021 20:17:07,603 INFO : 19% Done
16 Nov 2021 20:17:07,614 INFO : 21% Done
16 Nov 2021 20:17:07,625 INFO : 22% Done
16 Nov 2021 20:17:07,635 INFO : 24% Done
16 Nov 2021 20:17:07,646 INFO : 25% Done
16 Nov 2021 20:17:07,657 INFO : 26% Done
16 Nov 2021 20:17:07,667 INFO : 27% Done
16 Nov 2021 20:17:07,678 INFO : 29% Done
16 Nov 2021 20:17:07,688 INFO : 30% Done
16 Nov 2021 20:17:07,698 INFO : 32% Done
16 Nov 2021 20:17:07,707 DEBUG: Total peptides inserted: 19
16 Nov 2021 20:17:07,709 INFO : Inserting sp|P0CE47|EFTU1_ECOLI
16 Nov 2021 20:17:07,711 INFO : 34% Done
16 Nov 2021 20:17:07,722 INFO : 37% Done
16 Nov 2021 20:17:07,739 INFO : 38% Done
16 Nov 2021 20:17:07,750 INFO : 39% Done
16 Nov 2021 20:17:07,760 INFO : 41% Done
16 Nov 2021 20:17:07,771 INFO : 43% Done
16 Nov 2021 20:17:07,781 INFO : 44% Done
16 Nov 2021 20:17:07,791 INFO : 45% Done
16 Nov 2021 20:17:07,802 INFO : 47% Done
16 Nov 2021 20:17:07,810 DEBUG: Total peptides inserted: 9
16 Nov 2021 20:17:07,813 INFO : Inserting sp|P0A853|TNAA_ECOLI
16 Nov 2021 20:17:07,815 INFO : 49% Done
16 Nov 2021 20:17:07,827 INFO : 52% Done
16 Nov 2021 20:17:07,843 INFO : 53% Done
16 Nov 2021 20:17:07,854 INFO : 55% Done
16 Nov 2021 20:17:07,865 INFO : 58% Done
16 Nov 2021 20:17:07,883 INFO : 59% Done
16 Nov 2021 20:17:07,894 INFO : 61% Done
16 Nov 2021 20:17:07,905 INFO : 62% Done
16 Nov 2021 20:17:07,915 INFO : 64% Done
16 Nov 2021 20:17:07,926 INFO : 65% Done
16 Nov 2021 20:17:07,937 INFO : 67% Done
16 Nov 2021 20:17:07,947 INFO : 68% Done
16 Nov 2021 20:17:07,958 INFO : 70% Done
16 Nov 2021 20:17:07,969 INFO : 71% Done
16 Nov 2021 20:17:07,979 INFO : 73% Done
16 Nov 2021 20:17:07,987 DEBUG: Total peptides inserted: 15
16 Nov 2021 20:17:07,991 INFO : Inserting sp|P0A6Y8|DNAK_ECOLI
16 Nov 2021 20:17:07,994 INFO : 74% Done
16 Nov 2021 20:17:08,005 INFO : 75% Done
16 Nov 2021 20:17:08,016 INFO : 77% Done
16 Nov 2021 20:17:08,027 INFO : 78% Done
16 Nov 2021 20:17:08,038 INFO : 80% Done
16 Nov 2021 20:17:08,048 INFO : 81% Done
16 Nov 2021 20:17:08,060 INFO : 83% Done
16 Nov 2021 20:17:08,070 INFO : 84% Done
16 Nov 2021 20:17:08,081 INFO : 86% Done
16 Nov 2021 20:17:08,092 INFO : 87% Done
16 Nov 2021 20:17:08,103 INFO : 89% Done
16 Nov 2021 20:17:08,114 INFO : 90% Done
16 Nov 2021 20:17:08,123 DEBUG: Total peptides inserted: 12
16 Nov 2021 20:17:08,125 INFO : 91% Done
16 Nov 2021 20:17:08,128 INFO : Inserting sp|P0A6F5|CH60_ECOLI
16 Nov 2021 20:17:08,131 INFO : 92% Done
16 Nov 2021 20:17:08,143 INFO : 93% Done
16 Nov 2021 20:17:08,154 INFO : 95% Done
16 Nov 2021 20:17:08,166 INFO : 97% Done
16 Nov 2021 20:17:08,176 INFO : 98% Done
16 Nov 2021 20:17:08,185 DEBUG: Total peptides inserted: 5
16 Nov 2021 20:17:08,186 INFO : Done parsing Skyline document.
16 Nov 2021 20:17:08,215 INFO : Creating and populating temp tables for Proportion values
16 Nov 2021 20:17:08,232 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
16 Nov 2021 20:17:08,267 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
16 Nov 2021 20:17:08,290 INFO : Cleaning up temp tables
16 Nov 2021 20:17:08,652 INFO : Completed import of Skyline document from Synapt_G2Si_2021-08-17_15-40-26.sky.zip
16 Nov 2021 20:17:08,654 INFO : 100% Done
16 Nov 2021 20:17:08,657 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Ghent%20%20-%20LFQBenchmark%20across%20Instrument%20Platforms_b63ebd1c-2984-103a-bfdd-fea6ddf55ce4/_temp__2021-11-16_19-37-29/export/subfolders/SynaptG2Si/xar/experiments_and_runs.xar.exploded/Run115722/Synapt_G2Si_2021-08-17_15-40-26.sky.zip into the system
16 Nov 2021 20:17:08,662 INFO : Done importing xar
16 Nov 2021 20:17:08,664 INFO : Loading pages and webpart properties
16 Nov 2021 20:17:08,843 INFO : Done importing pages and webpart properties
16 Nov 2021 20:17:08,843 INFO : Done importing folder archive for SynaptG2Si
16 Nov 2021 20:17:08,889 INFO : New container created with inherited permissions for SynaptXS
16 Nov 2021 20:17:08,889 INFO : Loading folder archive for SynaptXS
16 Nov 2021 20:17:08,891 INFO : Loading folder properties (folder type, settings and active modules)
16 Nov 2021 20:17:08,942 INFO : Done importing folder properties (folder type, settings and active modules)
16 Nov 2021 20:17:08,944 INFO : Loading etl definitions
16 Nov 2021 20:17:08,945 INFO : Loading wikis
16 Nov 2021 20:17:08,946 INFO : 0 wikis imported
16 Nov 2021 20:17:08,946 INFO : Done importing wikis
16 Nov 2021 20:17:08,947 INFO : Starting to copy files
16 Nov 2021 20:19:14,667 INFO : 13 files copied, now copying LFQ_Waters_SynaptXS_SONAR_AutoQC_01.raw.zip
16 Nov 2021 20:21:19,321 INFO : 24 files copied, now copying LFQ_Waters_SynaptXS_DDA_Standard_AutoQC_02.raw.zip
16 Nov 2021 20:22:10,820 INFO : 28 files copied, now copying Synapt_XS.redundant.blib
16 Nov 2021 20:22:15,167 INFO : Copied 33 files
16 Nov 2021 20:22:15,167 INFO : Ensuring exp.data rows exist for imported files
16 Nov 2021 20:22:15,305 INFO : Starting Sample Type and Data Class import
16 Nov 2021 20:22:15,305 INFO : No types XAR file to process.
16 Nov 2021 20:22:15,305 INFO : Finished importing Sample Types and Data Classes
16 Nov 2021 20:22:15,307 INFO : Loading xar
16 Nov 2021 20:22:15,534 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9335:TargetedMS.ImportSkyZip'
16 Nov 2021 20:22:15,536 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9335:TargetedMS.ImportSkyZip.Core'
16 Nov 2021 20:22:15,538 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9335:TargetedMS.ImportSkyZip.Output'
16 Nov 2021 20:22:15,538 DEBUG: Protocol import complete
16 Nov 2021 20:22:15,547 DEBUG: Protocol action set import complete
16 Nov 2021 20:22:15,554 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9335:TargetedMS.ImportSkyZip'
16 Nov 2021 20:22:15,560 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9335:a4ebf2df-ab54-1039-be5b-fea6ddf5138a'
16 Nov 2021 20:22:15,563 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9335:a4ebf2bb-ab54-1039-be5b-fea6ddf5138a'
16 Nov 2021 20:22:15,563 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9335:TargetedMS.ImportSkyZip.Core'
16 Nov 2021 20:22:15,565 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9335:TargetedMS.ImportSkyZip.Output'
16 Nov 2021 20:22:15,565 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9335:a4ebf343-ab54-1039-be5b-fea6ddf5138a'
16 Nov 2021 20:22:15,566 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Ghent%20%20-%20LFQBenchmark%20across%20Instrument%20Platforms_b63ebd1c-2984-103a-bfdd-fea6ddf55ce4/_temp__2021-11-16_19-37-29/export/subfolders/SynaptXS/xar/experiments_and_runs.xar.exploded/Run111216/Synapt_XS_2021-06-09_15-30-35/Synapt_XS.skyd into the system
16 Nov 2021 20:22:15,567 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Ghent%20%20-%20LFQBenchmark%20across%20Instrument%20Platforms_b63ebd1c-2984-103a-bfdd-fea6ddf55ce4/_temp__2021-11-16_19-37-29/export/subfolders/SynaptXS/xar/experiments_and_runs.xar.exploded/Run111216/Synapt_XS_2021-06-09_15-30-35/Synapt_XS.skyd into the system
16 Nov 2021 20:22:15,567 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Ghent%20%20-%20LFQBenchmark%20across%20Instrument%20Platforms_b63ebd1c-2984-103a-bfdd-fea6ddf55ce4/_temp__2021-11-16_19-37-29/export/subfolders/SynaptXS/xar/experiments_and_runs.xar.exploded/Run111216/Synapt_XS_2021-06-09_15-30-35.sky.zip into the system
16 Nov 2021 20:22:15,570 INFO : Starting import from Synapt_XS_2021-06-09_15-30-35.sky.zip
16 Nov 2021 20:22:15,573 INFO : Starting to import Skyline document from Synapt_XS_2021-06-09_15-30-35.sky.zip
16 Nov 2021 20:22:15,577 INFO : Expanding Synapt_XS.blib
16 Nov 2021 20:22:15,604 INFO : Expanding Synapt_XS.redundant.blib
16 Nov 2021 20:22:15,771 INFO : Expanding Synapt_XS.skyd
16 Nov 2021 20:22:15,854 INFO : Expanding Synapt_XS.sky
16 Nov 2021 20:22:15,868 INFO : Expanding Synapt_XS.skyl
16 Nov 2021 20:22:15,951 DEBUG: Starting to load chromatogram headers
16 Nov 2021 20:22:15,954 DEBUG: Done loading chromatogram headers
16 Nov 2021 20:22:16,011 INFO : Inserting sp|P0A853|TNAA_ECOLI
16 Nov 2021 20:22:16,017 INFO : 1% Done
16 Nov 2021 20:22:16,041 INFO : 2% Done
16 Nov 2021 20:22:16,058 INFO : 3% Done
16 Nov 2021 20:22:16,078 INFO : 5% Done
16 Nov 2021 20:22:16,107 INFO : 7% Done
16 Nov 2021 20:22:16,136 INFO : 8% Done
16 Nov 2021 20:22:16,153 INFO : 9% Done
16 Nov 2021 20:22:16,173 INFO : 11% Done
16 Nov 2021 20:22:16,201 INFO : 12% Done
16 Nov 2021 20:22:16,234 INFO : 13% Done
16 Nov 2021 20:22:16,251 INFO : 14% Done
16 Nov 2021 20:22:16,270 INFO : 16% Done
16 Nov 2021 20:22:16,301 INFO : 18% Done
16 Nov 2021 20:22:16,330 INFO : 19% Done
16 Nov 2021 20:22:16,348 INFO : 20% Done
16 Nov 2021 20:22:16,367 INFO : 22% Done
16 Nov 2021 20:22:16,397 INFO : 23% Done
16 Nov 2021 20:22:16,412 DEBUG: Total peptides inserted: 18
16 Nov 2021 20:22:16,414 INFO : Inserting sp|P0CE47|EFTU1_ECOLI
16 Nov 2021 20:22:16,418 INFO : 24% Done
16 Nov 2021 20:22:16,438 INFO : 25% Done
16 Nov 2021 20:22:16,467 INFO : 26% Done
16 Nov 2021 20:22:16,497 INFO : 28% Done
16 Nov 2021 20:22:16,527 INFO : 30% Done
16 Nov 2021 20:22:16,555 INFO : 31% Done
16 Nov 2021 20:22:16,573 INFO : 32% Done
16 Nov 2021 20:22:16,590 INFO : 33% Done
16 Nov 2021 20:22:16,607 INFO : 34% Done
16 Nov 2021 20:22:16,640 INFO : 35% Done
16 Nov 2021 20:22:16,657 INFO : 36% Done
16 Nov 2021 20:22:16,675 INFO : 37% Done
16 Nov 2021 20:22:16,692 INFO : 38% Done
16 Nov 2021 20:22:16,710 INFO : 39% Done
16 Nov 2021 20:22:16,727 INFO : 40% Done
16 Nov 2021 20:22:16,745 INFO : 41% Done
16 Nov 2021 20:22:16,766 INFO : 42% Done
16 Nov 2021 20:22:16,793 DEBUG: Total peptides inserted: 18
16 Nov 2021 20:22:16,796 INFO : Inserting sp|P02925|RBSB_ECOLI
16 Nov 2021 20:22:16,811 INFO : 43% Done
16 Nov 2021 20:22:16,869 INFO : 44% Done
16 Nov 2021 20:22:16,950 INFO : 46% Done
16 Nov 2021 20:22:16,980 INFO : 47% Done
16 Nov 2021 20:22:17,010 INFO : 49% Done
16 Nov 2021 20:22:17,039 INFO : 51% Done
16 Nov 2021 20:22:17,068 INFO : 52% Done
16 Nov 2021 20:22:17,086 INFO : 54% Done
16 Nov 2021 20:22:17,116 INFO : 55% Done
16 Nov 2021 20:22:17,135 INFO : 57% Done
16 Nov 2021 20:22:17,179 INFO : 58% Done
16 Nov 2021 20:22:17,198 INFO : 60% Done
16 Nov 2021 20:22:17,223 DEBUG: Total peptides inserted: 13
16 Nov 2021 20:22:17,226 INFO : Inserting sp|P0A6F3|GLPK_ECOLI
16 Nov 2021 20:22:17,229 INFO : 61% Done
16 Nov 2021 20:22:17,246 INFO : 62% Done
16 Nov 2021 20:22:17,264 INFO : 63% Done
16 Nov 2021 20:22:17,280 INFO : 64% Done
16 Nov 2021 20:22:17,298 INFO : 65% Done
16 Nov 2021 20:22:17,315 INFO : 66% Done
16 Nov 2021 20:22:17,333 INFO : 68% Done
16 Nov 2021 20:22:17,361 INFO : 69% Done
16 Nov 2021 20:22:17,394 INFO : 70% Done
16 Nov 2021 20:22:17,412 INFO : 72% Done
16 Nov 2021 20:22:17,440 INFO : 73% Done
16 Nov 2021 20:22:17,458 INFO : 74% Done
16 Nov 2021 20:22:17,478 INFO : 75% Done
16 Nov 2021 20:22:17,508 INFO : 76% Done
16 Nov 2021 20:22:17,527 INFO : 78% Done
16 Nov 2021 20:22:17,560 INFO : 79% Done
16 Nov 2021 20:22:17,581 DEBUG: Total peptides inserted: 17
16 Nov 2021 20:22:17,584 INFO : Inserting sp|P0A6Y8|DNAK_ECOLI
16 Nov 2021 20:22:17,589 INFO : 80% Done
16 Nov 2021 20:22:17,615 INFO : 81% Done
16 Nov 2021 20:22:17,665 INFO : 83% Done
16 Nov 2021 20:22:17,703 INFO : 84% Done
16 Nov 2021 20:22:17,729 INFO : 85% Done
16 Nov 2021 20:22:17,751 INFO : 86% Done
16 Nov 2021 20:22:17,769 INFO : 88% Done
16 Nov 2021 20:22:17,801 INFO : 89% Done
16 Nov 2021 20:22:17,822 INFO : 90% Done
16 Nov 2021 20:22:17,843 INFO : 91% Done
16 Nov 2021 20:22:17,865 INFO : 92% Done
16 Nov 2021 20:22:17,885 INFO : 93% Done
16 Nov 2021 20:22:17,921 INFO : 95% Done
16 Nov 2021 20:22:17,954 INFO : 96% Done
16 Nov 2021 20:22:17,974 INFO : 97% Done
16 Nov 2021 20:22:17,995 INFO : 98% Done
16 Nov 2021 20:22:18,012 DEBUG: Total peptides inserted: 17
16 Nov 2021 20:22:18,014 INFO : Done parsing Skyline document.
16 Nov 2021 20:22:18,041 INFO : Creating and populating temp tables for Proportion values
16 Nov 2021 20:22:18,074 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
16 Nov 2021 20:22:18,194 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
16 Nov 2021 20:22:18,260 INFO : Cleaning up temp tables
16 Nov 2021 20:22:18,499 INFO : Completed import of Skyline document from Synapt_XS_2021-06-09_15-30-35.sky.zip
16 Nov 2021 20:22:18,501 INFO : 100% Done
16 Nov 2021 20:22:18,507 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Ghent%20%20-%20LFQBenchmark%20across%20Instrument%20Platforms_b63ebd1c-2984-103a-bfdd-fea6ddf55ce4/_temp__2021-11-16_19-37-29/export/subfolders/SynaptXS/xar/experiments_and_runs.xar.exploded/Run111216/Synapt_XS_2021-06-09_15-30-35.sky.zip into the system
16 Nov 2021 20:22:18,513 INFO : Done importing xar
16 Nov 2021 20:22:18,515 INFO : Loading pages and webpart properties
16 Nov 2021 20:22:18,695 INFO : Done importing pages and webpart properties
16 Nov 2021 20:22:18,696 INFO : Done importing folder archive for SynaptXS
16 Nov 2021 20:22:18,736 INFO : New container created with inherited permissions for timsTOFPro
16 Nov 2021 20:22:18,736 INFO : Loading folder archive for timsTOFPro
16 Nov 2021 20:22:18,737 INFO : Loading folder properties (folder type, settings and active modules)
16 Nov 2021 20:22:18,782 INFO : Done importing folder properties (folder type, settings and active modules)
16 Nov 2021 20:22:18,784 INFO : Loading etl definitions
16 Nov 2021 20:22:18,785 INFO : Loading wikis
16 Nov 2021 20:22:18,786 INFO : 0 wikis imported
16 Nov 2021 20:22:18,786 INFO : Done importing wikis
16 Nov 2021 20:22:18,787 INFO : Starting to copy files
16 Nov 2021 20:24:24,621 INFO : 6 files copied, now copying LFQ_timsTOFPro_diaPASEF_Standard_AutoQC_02.d.zip
16 Nov 2021 20:26:55,039 INFO : 10 files copied, now copying LFQ_timsTOFPro_diaPASEF_Standard_AutoQC_01.d.zip
16 Nov 2021 20:29:11,750 INFO : 13 files copied, now copying LFQ_timsTOFPro_diaPASEF_AutoQC_01.d.zip
16 Nov 2021 20:32:05,550 INFO : 17 files copied, now copying LFQ_timsTOFPro_PASEF_AutoQC_03.d.zip
16 Nov 2021 20:32:27,546 INFO : 18 files copied, now copying TimsTOFPro_AutoQC.redundant.blib
16 Nov 2021 20:32:28,430 INFO : Copied 23 files
16 Nov 2021 20:32:28,430 INFO : Ensuring exp.data rows exist for imported files
16 Nov 2021 20:32:28,522 INFO : Starting Sample Type and Data Class import
16 Nov 2021 20:32:28,522 INFO : No types XAR file to process.
16 Nov 2021 20:32:28,522 INFO : Finished importing Sample Types and Data Classes
16 Nov 2021 20:32:28,524 INFO : Loading xar
16 Nov 2021 20:32:28,984 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9336:TargetedMS.ImportSkyZip'
16 Nov 2021 20:32:28,986 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9336:TargetedMS.ImportSkyZip.Core'
16 Nov 2021 20:32:28,988 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9336:TargetedMS.ImportSkyZip.Output'
16 Nov 2021 20:32:28,988 DEBUG: Protocol import complete
16 Nov 2021 20:32:28,999 DEBUG: Protocol action set import complete
16 Nov 2021 20:32:29,010 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9336:TargetedMS.ImportSkyZip'
16 Nov 2021 20:32:29,019 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9336:fdd88b14-ab56-1039-be5b-fea6ddf5138a'
16 Nov 2021 20:32:29,024 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9336:fdd88ac9-ab56-1039-be5b-fea6ddf5138a'
16 Nov 2021 20:32:29,024 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9336:TargetedMS.ImportSkyZip.Core'
16 Nov 2021 20:32:29,027 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9336:TargetedMS.ImportSkyZip.Output'
16 Nov 2021 20:32:29,027 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9336:fdd88b62-ab56-1039-be5b-fea6ddf5138a'
16 Nov 2021 20:32:29,029 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Ghent%20%20-%20LFQBenchmark%20across%20Instrument%20Platforms_b63ebd1c-2984-103a-bfdd-fea6ddf55ce4/_temp__2021-11-16_19-37-29/export/subfolders/timsTOFPro/xar/experiments_and_runs.xar.exploded/Run111219/TimsTOFPro_AutoQC_2021-06-09_15-47-12/TimsTOFPro_AutoQC.skyd into the system
16 Nov 2021 20:32:29,030 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Ghent%20%20-%20LFQBenchmark%20across%20Instrument%20Platforms_b63ebd1c-2984-103a-bfdd-fea6ddf55ce4/_temp__2021-11-16_19-37-29/export/subfolders/timsTOFPro/xar/experiments_and_runs.xar.exploded/Run111219/TimsTOFPro_AutoQC_2021-06-09_15-47-12/TimsTOFPro_AutoQC.skyd into the system
16 Nov 2021 20:32:29,030 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Ghent%20%20-%20LFQBenchmark%20across%20Instrument%20Platforms_b63ebd1c-2984-103a-bfdd-fea6ddf55ce4/_temp__2021-11-16_19-37-29/export/subfolders/timsTOFPro/xar/experiments_and_runs.xar.exploded/Run111219/TimsTOFPro_AutoQC_2021-06-09_15-47-12.sky.zip into the system
16 Nov 2021 20:32:29,031 INFO : Starting import from TimsTOFPro_AutoQC_2021-06-09_15-47-12.sky.zip
16 Nov 2021 20:32:29,035 INFO : Starting to import Skyline document from TimsTOFPro_AutoQC_2021-06-09_15-47-12.sky.zip
16 Nov 2021 20:32:29,040 INFO : Expanding TimsTOFPro_AutoQC.blib
16 Nov 2021 20:32:29,251 INFO : Expanding TimsTOFPro_AutoQC.redundant.blib
16 Nov 2021 20:32:29,649 INFO : Expanding TimsTOFPro_AutoQC.skyd
16 Nov 2021 20:32:29,754 INFO : Expanding TimsTOFPro_AutoQC.sky
16 Nov 2021 20:32:29,762 INFO : Expanding TimsTOFPro_AutoQC.skyl
16 Nov 2021 20:32:29,770 INFO : 1% Done
16 Nov 2021 20:32:29,819 DEBUG: Starting to load chromatogram headers
16 Nov 2021 20:32:29,821 DEBUG: Done loading chromatogram headers
16 Nov 2021 20:32:29,869 INFO : Inserting sp|P0A853|TNAA_ECOLI
16 Nov 2021 20:32:29,874 INFO : 2% Done
16 Nov 2021 20:32:29,896 INFO : 3% Done
16 Nov 2021 20:32:29,910 INFO : 4% Done
16 Nov 2021 20:32:29,922 INFO : 5% Done
16 Nov 2021 20:32:29,937 INFO : 7% Done
16 Nov 2021 20:32:29,958 INFO : 8% Done
16 Nov 2021 20:32:29,970 INFO : 10% Done
16 Nov 2021 20:32:29,982 INFO : 11% Done
16 Nov 2021 20:32:29,995 INFO : 12% Done
16 Nov 2021 20:32:30,007 INFO : 13% Done
16 Nov 2021 20:32:30,020 INFO : 15% Done
16 Nov 2021 20:32:30,041 INFO : 16% Done
16 Nov 2021 20:32:30,055 INFO : 18% Done
16 Nov 2021 20:32:30,075 INFO : 19% Done
16 Nov 2021 20:32:30,088 INFO : 20% Done
16 Nov 2021 20:32:30,101 INFO : 22% Done
16 Nov 2021 20:32:30,111 DEBUG: Total peptides inserted: 16
16 Nov 2021 20:32:30,113 INFO : Inserting sp|P0CE47|EFTU1_ECOLI
16 Nov 2021 20:32:30,116 INFO : 23% Done
16 Nov 2021 20:32:30,128 INFO : 24% Done
16 Nov 2021 20:32:30,140 INFO : 25% Done
16 Nov 2021 20:32:30,153 INFO : 26% Done
16 Nov 2021 20:32:30,174 INFO : 28% Done
16 Nov 2021 20:32:30,195 INFO : 29% Done
16 Nov 2021 20:32:30,208 INFO : 32% Done
16 Nov 2021 20:32:30,227 INFO : 33% Done
16 Nov 2021 20:32:30,241 INFO : 34% Done
16 Nov 2021 20:32:30,254 INFO : 35% Done
16 Nov 2021 20:32:30,266 INFO : 36% Done
16 Nov 2021 20:32:30,279 INFO : 38% Done
16 Nov 2021 20:32:30,300 INFO : 39% Done
16 Nov 2021 20:32:30,310 DEBUG: Total peptides inserted: 13
16 Nov 2021 20:32:30,312 INFO : Inserting sp|P0A6Y8|DNAK_ECOLI
16 Nov 2021 20:32:30,315 INFO : 40% Done
16 Nov 2021 20:32:30,327 INFO : 41% Done
16 Nov 2021 20:32:30,340 INFO : 42% Done
16 Nov 2021 20:32:30,352 INFO : 44% Done
16 Nov 2021 20:32:30,365 INFO : 45% Done
16 Nov 2021 20:32:30,377 INFO : 46% Done
16 Nov 2021 20:32:30,390 INFO : 47% Done
16 Nov 2021 20:32:30,402 INFO : 48% Done
16 Nov 2021 20:32:30,414 INFO : 49% Done
16 Nov 2021 20:32:30,427 INFO : 50% Done
16 Nov 2021 20:32:30,439 INFO : 51% Done
16 Nov 2021 20:32:30,451 INFO : 52% Done
16 Nov 2021 20:32:30,465 INFO : 55% Done
16 Nov 2021 20:32:30,485 INFO : 56% Done
16 Nov 2021 20:32:30,497 INFO : 57% Done
16 Nov 2021 20:32:30,510 INFO : 58% Done
16 Nov 2021 20:32:30,522 INFO : 59% Done
16 Nov 2021 20:32:30,532 DEBUG: Total peptides inserted: 17
16 Nov 2021 20:32:30,534 INFO : Inserting sp|P02925|RBSB_ECOLI
16 Nov 2021 20:32:30,537 INFO : 60% Done
16 Nov 2021 20:32:30,549 INFO : 61% Done
16 Nov 2021 20:32:30,561 INFO : 62% Done
16 Nov 2021 20:32:30,574 INFO : 63% Done
16 Nov 2021 20:32:30,587 INFO : 65% Done
16 Nov 2021 20:32:30,606 INFO : 66% Done
16 Nov 2021 20:32:30,619 INFO : 69% Done
16 Nov 2021 20:32:30,640 INFO : 71% Done
16 Nov 2021 20:32:30,660 INFO : 72% Done
16 Nov 2021 20:32:30,672 INFO : 73% Done
16 Nov 2021 20:32:30,684 INFO : 74% Done
16 Nov 2021 20:32:30,695 DEBUG: Total peptides inserted: 11
16 Nov 2021 20:32:30,697 INFO : Inserting sp|P0A6F3|GLPK_ECOLI
16 Nov 2021 20:32:30,712 INFO : 76% Done
16 Nov 2021 20:32:30,733 INFO : 78% Done
16 Nov 2021 20:32:30,753 INFO : 80% Done
16 Nov 2021 20:32:30,765 INFO : 81% Done
16 Nov 2021 20:32:30,777 INFO : 82% Done
16 Nov 2021 20:32:30,790 INFO : 83% Done
16 Nov 2021 20:32:30,803 INFO : 85% Done
16 Nov 2021 20:32:30,824 INFO : 87% Done
16 Nov 2021 20:32:30,844 INFO : 88% Done
16 Nov 2021 20:32:30,857 INFO : 89% Done
16 Nov 2021 20:32:30,869 INFO : 90% Done
16 Nov 2021 20:32:30,883 INFO : 92% Done
16 Nov 2021 20:32:30,896 INFO : 93% Done
16 Nov 2021 20:32:30,908 INFO : 94% Done
16 Nov 2021 20:32:30,920 INFO : 95% Done
16 Nov 2021 20:32:30,933 INFO : 97% Done
16 Nov 2021 20:32:30,953 INFO : 98% Done
16 Nov 2021 20:32:30,963 DEBUG: Total peptides inserted: 18
16 Nov 2021 20:32:30,964 INFO : Done parsing Skyline document.
16 Nov 2021 20:32:31,007 INFO : Creating and populating temp tables for Proportion values
16 Nov 2021 20:32:31,037 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
16 Nov 2021 20:32:31,108 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
16 Nov 2021 20:32:31,153 INFO : Cleaning up temp tables
16 Nov 2021 20:32:31,343 INFO : Completed import of Skyline document from TimsTOFPro_AutoQC_2021-06-09_15-47-12.sky.zip
16 Nov 2021 20:32:31,346 INFO : 100% Done
16 Nov 2021 20:32:31,351 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Ghent%20%20-%20LFQBenchmark%20across%20Instrument%20Platforms_b63ebd1c-2984-103a-bfdd-fea6ddf55ce4/_temp__2021-11-16_19-37-29/export/subfolders/timsTOFPro/xar/experiments_and_runs.xar.exploded/Run111219/TimsTOFPro_AutoQC_2021-06-09_15-47-12.sky.zip into the system
16 Nov 2021 20:32:31,356 INFO : Done importing xar
16 Nov 2021 20:32:31,358 INFO : Loading pages and webpart properties
16 Nov 2021 20:32:31,588 INFO : Done importing pages and webpart properties
16 Nov 2021 20:32:31,588 INFO : Done importing folder archive for timsTOFPro
16 Nov 2021 20:32:31,667 INFO : New container created with inherited permissions for TripleTOF5600
16 Nov 2021 20:32:31,667 INFO : Loading folder archive for TripleTOF5600
16 Nov 2021 20:32:31,668 INFO : Loading folder properties (folder type, settings and active modules)
16 Nov 2021 20:32:31,715 INFO : Done importing folder properties (folder type, settings and active modules)
16 Nov 2021 20:32:31,717 INFO : Loading etl definitions
16 Nov 2021 20:32:31,718 INFO : Loading wikis
16 Nov 2021 20:32:31,719 INFO : 0 wikis imported
16 Nov 2021 20:32:31,719 INFO : Done importing wikis
16 Nov 2021 20:32:31,720 INFO : Starting to copy files
16 Nov 2021 20:33:13,948 INFO : Copied 57 files
16 Nov 2021 20:33:13,949 INFO : Ensuring exp.data rows exist for imported files
16 Nov 2021 20:33:14,148 INFO : Starting Sample Type and Data Class import
16 Nov 2021 20:33:14,148 INFO : No types XAR file to process.
16 Nov 2021 20:33:14,148 INFO : Finished importing Sample Types and Data Classes
16 Nov 2021 20:33:14,150 INFO : Loading xar
16 Nov 2021 20:33:15,620 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9337:TargetedMS.ImportSkyZip'
16 Nov 2021 20:33:15,621 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9337:TargetedMS.ImportSkyZip.Core'
16 Nov 2021 20:33:15,623 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9337:TargetedMS.ImportSkyZip.Output'
16 Nov 2021 20:33:15,623 DEBUG: Protocol import complete
16 Nov 2021 20:33:15,631 DEBUG: Protocol action set import complete
16 Nov 2021 20:33:15,637 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9337:TargetedMS.ImportSkyZip'
16 Nov 2021 20:33:15,643 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9337:a9ad002b-a743-1039-be5b-fea6ddf5138a'
16 Nov 2021 20:33:15,646 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9337:a9acff8b-a743-1039-be5b-fea6ddf5138a'
16 Nov 2021 20:33:15,646 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9337:TargetedMS.ImportSkyZip.Core'
16 Nov 2021 20:33:15,648 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9337:TargetedMS.ImportSkyZip.Output'
16 Nov 2021 20:33:15,648 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9337:a9ad00fd-a743-1039-be5b-fea6ddf5138a'
16 Nov 2021 20:33:15,649 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Ghent%20%20-%20LFQBenchmark%20across%20Instrument%20Platforms_b63ebd1c-2984-103a-bfdd-fea6ddf55ce4/_temp__2021-11-16_19-37-29/export/subfolders/TripleTOF5600/xar/experiments_and_runs.xar.exploded/Run110930/TripleTOF5600_AutoQC_2021-06-04_11-19-08/TripleTOF5600_AutoQC.skyd into the system
16 Nov 2021 20:33:15,649 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Ghent%20%20-%20LFQBenchmark%20across%20Instrument%20Platforms_b63ebd1c-2984-103a-bfdd-fea6ddf55ce4/_temp__2021-11-16_19-37-29/export/subfolders/TripleTOF5600/xar/experiments_and_runs.xar.exploded/Run110930/TripleTOF5600_AutoQC_2021-06-04_11-19-08/TripleTOF5600_AutoQC.skyd into the system
16 Nov 2021 20:33:15,650 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Ghent%20%20-%20LFQBenchmark%20across%20Instrument%20Platforms_b63ebd1c-2984-103a-bfdd-fea6ddf55ce4/_temp__2021-11-16_19-37-29/export/subfolders/TripleTOF5600/xar/experiments_and_runs.xar.exploded/Run110930/TripleTOF5600_AutoQC_2021-06-04_11-19-08.sky.zip into the system
16 Nov 2021 20:33:15,650 INFO : Starting import from TripleTOF5600_AutoQC_2021-06-04_11-19-08.sky.zip
16 Nov 2021 20:33:15,653 INFO : Starting to import Skyline document from TripleTOF5600_AutoQC_2021-06-04_11-19-08.sky.zip
16 Nov 2021 20:33:15,658 INFO : Expanding TripleTOF5600_AutoQC.blib
16 Nov 2021 20:33:15,885 INFO : Expanding TripleTOF5600_AutoQC.redundant.blib
16 Nov 2021 20:33:18,407 INFO : Expanding TripleTOF5600_AutoQC.skyd
16 Nov 2021 20:33:18,554 INFO : Expanding TripleTOF5600_AutoQC.sky
16 Nov 2021 20:33:18,574 INFO : Expanding TripleTOF5600_AutoQC.skyl
16 Nov 2021 20:33:18,581 INFO : 1% Done
16 Nov 2021 20:33:18,723 DEBUG: Starting to load chromatogram headers
16 Nov 2021 20:33:18,728 DEBUG: Done loading chromatogram headers
16 Nov 2021 20:33:18,847 INFO : Inserting sp|P0A6F3|GLPK_ECOLI
16 Nov 2021 20:33:18,853 INFO : 2% Done
16 Nov 2021 20:33:18,888 INFO : 3% Done
16 Nov 2021 20:33:18,921 INFO : 4% Done
16 Nov 2021 20:33:18,946 INFO : 5% Done
16 Nov 2021 20:33:18,971 INFO : 6% Done
16 Nov 2021 20:33:18,998 INFO : 8% Done
16 Nov 2021 20:33:19,040 INFO : 9% Done
16 Nov 2021 20:33:19,065 INFO : 10% Done
16 Nov 2021 20:33:19,092 INFO : 12% Done
16 Nov 2021 20:33:19,136 INFO : 13% Done
16 Nov 2021 20:33:19,187 INFO : 14% Done
16 Nov 2021 20:33:19,213 INFO : 15% Done
16 Nov 2021 20:33:19,240 INFO : 16% Done
16 Nov 2021 20:33:19,266 INFO : 17% Done
16 Nov 2021 20:33:19,291 INFO : 18% Done
16 Nov 2021 20:33:19,317 INFO : 19% Done
16 Nov 2021 20:33:19,343 INFO : 20% Done
16 Nov 2021 20:33:19,368 INFO : 21% Done
16 Nov 2021 20:33:19,393 INFO : 22% Done
16 Nov 2021 20:33:19,418 INFO : 23% Done
16 Nov 2021 20:33:19,446 INFO : 25% Done
16 Nov 2021 20:33:19,514 DEBUG: Total peptides inserted: 23
16 Nov 2021 20:33:19,517 INFO : Inserting sp|P0A853|TNAA_ECOLI
16 Nov 2021 20:33:19,521 INFO : 26% Done
16 Nov 2021 20:33:19,547 INFO : 27% Done
16 Nov 2021 20:33:19,572 INFO : 28% Done
16 Nov 2021 20:33:19,598 INFO : 29% Done
16 Nov 2021 20:33:19,624 INFO : 30% Done
16 Nov 2021 20:33:19,650 INFO : 31% Done
16 Nov 2021 20:33:19,676 INFO : 32% Done
16 Nov 2021 20:33:19,702 INFO : 33% Done
16 Nov 2021 20:33:19,729 INFO : 34% Done
16 Nov 2021 20:33:19,755 INFO : 35% Done
16 Nov 2021 20:33:19,783 INFO : 37% Done
16 Nov 2021 20:33:19,826 INFO : 38% Done
16 Nov 2021 20:33:19,851 INFO : 39% Done
16 Nov 2021 20:33:19,878 INFO : 40% Done
16 Nov 2021 20:33:19,904 INFO : 41% Done
16 Nov 2021 20:33:19,930 INFO : 42% Done
16 Nov 2021 20:33:19,957 INFO : 43% Done
16 Nov 2021 20:33:19,984 INFO : 44% Done
16 Nov 2021 20:33:20,011 INFO : 45% Done
16 Nov 2021 20:33:20,040 INFO : 47% Done
16 Nov 2021 20:33:20,110 INFO : 48% Done
16 Nov 2021 20:33:20,136 INFO : 49% Done
16 Nov 2021 20:33:20,163 INFO : 50% Done
16 Nov 2021 20:33:20,190 INFO : 51% Done
16 Nov 2021 20:33:20,213 DEBUG: Total peptides inserted: 25
16 Nov 2021 20:33:20,216 INFO : Inserting sp|P0CE47|EFTU1_ECOLI
16 Nov 2021 20:33:20,220 INFO : 52% Done
16 Nov 2021 20:33:20,247 INFO : 53% Done
16 Nov 2021 20:33:20,272 INFO : 54% Done
16 Nov 2021 20:33:20,298 INFO : 55% Done
16 Nov 2021 20:33:20,325 INFO : 56% Done
16 Nov 2021 20:33:20,350 INFO : 57% Done
16 Nov 2021 20:33:20,379 INFO : 59% Done
16 Nov 2021 20:33:20,422 INFO : 60% Done
16 Nov 2021 20:33:20,451 INFO : 61% Done
16 Nov 2021 20:33:20,481 INFO : 62% Done
16 Nov 2021 20:33:20,507 INFO : 63% Done
16 Nov 2021 20:33:20,532 INFO : 64% Done
16 Nov 2021 20:33:20,558 INFO : 65% Done
16 Nov 2021 20:33:20,583 INFO : 66% Done
16 Nov 2021 20:33:20,608 DEBUG: Total peptides inserted: 14
16 Nov 2021 20:33:20,612 INFO : Inserting sp|P61889|MDH_ECOLI
16 Nov 2021 20:33:20,616 INFO : 67% Done
16 Nov 2021 20:33:20,642 INFO : 68% Done
16 Nov 2021 20:33:20,668 INFO : 69% Done
16 Nov 2021 20:33:20,693 INFO : 70% Done
16 Nov 2021 20:33:20,719 INFO : 71% Done
16 Nov 2021 20:33:20,745 INFO : 72% Done
16 Nov 2021 20:33:20,771 INFO : 73% Done
16 Nov 2021 20:33:20,795 INFO : 74% Done
16 Nov 2021 20:33:20,845 INFO : 75% Done
16 Nov 2021 20:33:20,871 INFO : 76% Done
16 Nov 2021 20:33:20,897 INFO : 77% Done
16 Nov 2021 20:33:20,921 INFO : 78% Done
16 Nov 2021 20:33:20,943 DEBUG: Total peptides inserted: 13
16 Nov 2021 20:33:20,945 INFO : Inserting sp|P0A6Y8|DNAK_ECOLI
16 Nov 2021 20:33:20,949 INFO : 79% Done
16 Nov 2021 20:33:20,974 INFO : 80% Done
16 Nov 2021 20:33:20,999 INFO : 81% Done
16 Nov 2021 20:33:21,024 INFO : 82% Done
16 Nov 2021 20:33:21,051 INFO : 83% Done
16 Nov 2021 20:33:21,093 INFO : 84% Done
16 Nov 2021 20:33:21,119 INFO : 85% Done
16 Nov 2021 20:33:21,145 INFO : 86% Done
16 Nov 2021 20:33:21,171 INFO : 87% Done
16 Nov 2021 20:33:21,196 INFO : 88% Done
16 Nov 2021 20:33:21,221 INFO : 89% Done
16 Nov 2021 20:33:21,246 INFO : 90% Done
16 Nov 2021 20:33:21,273 INFO : 92% Done
16 Nov 2021 20:33:21,314 INFO : 93% Done
16 Nov 2021 20:33:21,340 INFO : 94% Done
16 Nov 2021 20:33:21,365 INFO : 95% Done
16 Nov 2021 20:33:21,390 INFO : 96% Done
16 Nov 2021 20:33:21,416 INFO : 97% Done
16 Nov 2021 20:33:21,441 INFO : 98% Done
16 Nov 2021 20:33:21,463 DEBUG: Total peptides inserted: 19
16 Nov 2021 20:33:21,464 INFO : Done parsing Skyline document.
16 Nov 2021 20:33:21,488 INFO : Creating and populating temp tables for Proportion values
16 Nov 2021 20:33:21,529 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
16 Nov 2021 20:33:21,709 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
16 Nov 2021 20:33:21,831 INFO : Cleaning up temp tables
16 Nov 2021 20:33:22,047 INFO : Completed import of Skyline document from TripleTOF5600_AutoQC_2021-06-04_11-19-08.sky.zip
16 Nov 2021 20:33:22,049 INFO : 100% Done
16 Nov 2021 20:33:22,053 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Ghent%20%20-%20LFQBenchmark%20across%20Instrument%20Platforms_b63ebd1c-2984-103a-bfdd-fea6ddf55ce4/_temp__2021-11-16_19-37-29/export/subfolders/TripleTOF5600/xar/experiments_and_runs.xar.exploded/Run110930/TripleTOF5600_AutoQC_2021-06-04_11-19-08.sky.zip into the system
16 Nov 2021 20:33:22,058 INFO : Done importing xar
16 Nov 2021 20:33:22,059 INFO : Loading pages and webpart properties
16 Nov 2021 20:33:22,211 INFO : Done importing pages and webpart properties
16 Nov 2021 20:33:22,211 INFO : Done importing folder archive for TripleTOF5600
16 Nov 2021 20:33:22,247 INFO : New container created with inherited permissions for TripleTOF6600+
16 Nov 2021 20:33:22,247 INFO : Loading folder archive for TripleTOF6600+
16 Nov 2021 20:33:22,248 INFO : Loading folder properties (folder type, settings and active modules)
16 Nov 2021 20:33:22,289 INFO : Done importing folder properties (folder type, settings and active modules)
16 Nov 2021 20:33:22,290 INFO : Loading etl definitions
16 Nov 2021 20:33:22,292 INFO : Loading wikis
16 Nov 2021 20:33:22,293 INFO : 0 wikis imported
16 Nov 2021 20:33:22,293 INFO : Done importing wikis
16 Nov 2021 20:33:22,293 INFO : Starting to copy files
16 Nov 2021 20:35:23,372 INFO : 69 files copied, now copying LFQ_TTOF6600_SWATH_Standard_AutoQC_01.wiff.scan
16 Nov 2021 20:35:40,296 INFO : Copied 75 files
16 Nov 2021 20:35:40,296 INFO : Ensuring exp.data rows exist for imported files
16 Nov 2021 20:35:40,555 INFO : Starting Sample Type and Data Class import
16 Nov 2021 20:35:40,555 INFO : No types XAR file to process.
16 Nov 2021 20:35:40,555 INFO : Finished importing Sample Types and Data Classes
16 Nov 2021 20:35:40,556 INFO : Loading xar
16 Nov 2021 20:35:41,206 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9338:TargetedMS.ImportSkyZip'
16 Nov 2021 20:35:41,208 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9338:TargetedMS.ImportSkyZip.Core'
16 Nov 2021 20:35:41,209 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9338:TargetedMS.ImportSkyZip.Output'
16 Nov 2021 20:35:41,209 DEBUG: Protocol import complete
16 Nov 2021 20:35:41,217 DEBUG: Protocol action set import complete
16 Nov 2021 20:35:41,225 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9338:TargetedMS.ImportSkyZip'
16 Nov 2021 20:35:41,230 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9338:5e3e7742-a749-1039-be5b-fea6ddf5138a'
16 Nov 2021 20:35:41,233 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9338:5dff7381-a747-1039-be5b-fea6ddf5138a'
16 Nov 2021 20:35:41,233 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9338:TargetedMS.ImportSkyZip.Core'
16 Nov 2021 20:35:41,235 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9338:TargetedMS.ImportSkyZip.Output'
16 Nov 2021 20:35:41,236 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9338:5e3e77b3-a749-1039-be5b-fea6ddf5138a'
16 Nov 2021 20:35:41,236 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Ghent%20%20-%20LFQBenchmark%20across%20Instrument%20Platforms_b63ebd1c-2984-103a-bfdd-fea6ddf55ce4/_temp__2021-11-16_19-37-29/export/subfolders/TripleTOF6600+/xar/experiments_and_runs.xar.exploded/Run110934/TripleTOF6600+_AutoQC_2021-06-04_11-55-17/TripleTOF6600+_AutoQC.skyd into the system
16 Nov 2021 20:35:41,237 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Ghent%20%20-%20LFQBenchmark%20across%20Instrument%20Platforms_b63ebd1c-2984-103a-bfdd-fea6ddf55ce4/_temp__2021-11-16_19-37-29/export/subfolders/TripleTOF6600+/xar/experiments_and_runs.xar.exploded/Run110934/TripleTOF6600+_AutoQC_2021-06-04_11-55-17/TripleTOF6600+_AutoQC.skyd into the system
16 Nov 2021 20:35:41,237 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Ghent%20%20-%20LFQBenchmark%20across%20Instrument%20Platforms_b63ebd1c-2984-103a-bfdd-fea6ddf55ce4/_temp__2021-11-16_19-37-29/export/subfolders/TripleTOF6600+/xar/experiments_and_runs.xar.exploded/Run110934/TripleTOF6600+_AutoQC_2021-06-04_11-55-17.sky.zip into the system
16 Nov 2021 20:35:41,238 INFO : Starting import from TripleTOF6600+_AutoQC_2021-06-04_11-55-17.sky.zip
16 Nov 2021 20:35:41,240 INFO : Starting to import Skyline document from TripleTOF6600+_AutoQC_2021-06-04_11-55-17.sky.zip
16 Nov 2021 20:35:41,245 INFO : Expanding TripleTOF6600+_AutoQC.blib
16 Nov 2021 20:35:41,614 INFO : Expanding TripleTOF6600+_AutoQC.redundant.blib
16 Nov 2021 20:35:42,081 INFO : Expanding TripleTOF6600+_AutoQC.skyd
16 Nov 2021 20:35:42,213 INFO : Expanding TripleTOF6600+_AutoQC.sky
16 Nov 2021 20:35:42,235 INFO : Expanding TripleTOF6600+_AutoQC.skyl
16 Nov 2021 20:35:42,372 DEBUG: Starting to load chromatogram headers
16 Nov 2021 20:35:42,377 DEBUG: Done loading chromatogram headers
16 Nov 2021 20:35:42,446 INFO : Inserting sp|P0A853|TNAA_ECOLI
16 Nov 2021 20:35:42,450 INFO : 1% Done
16 Nov 2021 20:35:42,480 INFO : 2% Done
16 Nov 2021 20:35:42,507 INFO : 3% Done
16 Nov 2021 20:35:42,529 INFO : 4% Done
16 Nov 2021 20:35:42,574 INFO : 5% Done
16 Nov 2021 20:35:42,596 INFO : 6% Done
16 Nov 2021 20:35:42,618 INFO : 7% Done
16 Nov 2021 20:35:42,640 INFO : 8% Done
16 Nov 2021 20:35:42,662 INFO : 9% Done
16 Nov 2021 20:35:42,698 INFO : 10% Done
16 Nov 2021 20:35:42,720 INFO : 11% Done
16 Nov 2021 20:35:42,762 INFO : 12% Done
16 Nov 2021 20:35:42,783 INFO : 13% Done
16 Nov 2021 20:35:42,805 INFO : 14% Done
16 Nov 2021 20:35:42,827 INFO : 15% Done
16 Nov 2021 20:35:42,869 INFO : 16% Done
16 Nov 2021 20:35:42,892 INFO : 18% Done
16 Nov 2021 20:35:42,929 INFO : 19% Done
16 Nov 2021 20:35:42,971 INFO : 20% Done
16 Nov 2021 20:35:42,992 INFO : 21% Done
16 Nov 2021 20:35:43,010 DEBUG: Total peptides inserted: 24
16 Nov 2021 20:35:43,013 INFO : Inserting sp|P0A6Y8|DNAK_ECOLI
16 Nov 2021 20:35:43,016 INFO : 22% Done
16 Nov 2021 20:35:43,038 INFO : 23% Done
16 Nov 2021 20:35:43,080 INFO : 24% Done
16 Nov 2021 20:35:43,101 INFO : 25% Done
16 Nov 2021 20:35:43,164 INFO : 26% Done
16 Nov 2021 20:35:43,185 INFO : 27% Done
16 Nov 2021 20:35:43,207 INFO : 28% Done
16 Nov 2021 20:35:43,229 INFO : 29% Done
16 Nov 2021 20:35:43,270 INFO : 30% Done
16 Nov 2021 20:35:43,290 INFO : 31% Done
16 Nov 2021 20:35:43,311 INFO : 32% Done
16 Nov 2021 20:35:43,333 INFO : 33% Done
16 Nov 2021 20:35:43,373 INFO : 34% Done
16 Nov 2021 20:35:43,396 INFO : 36% Done
16 Nov 2021 20:35:43,455 INFO : 37% Done
16 Nov 2021 20:35:43,476 INFO : 38% Done
16 Nov 2021 20:35:43,498 INFO : 39% Done
16 Nov 2021 20:35:43,519 INFO : 40% Done
16 Nov 2021 20:35:43,560 INFO : 41% Done
16 Nov 2021 20:35:43,581 INFO : 42% Done
16 Nov 2021 20:35:43,602 INFO : 43% Done
16 Nov 2021 20:35:43,644 INFO : 44% Done
16 Nov 2021 20:35:43,665 INFO : 45% Done
16 Nov 2021 20:35:43,687 INFO : 46% Done
16 Nov 2021 20:35:43,708 INFO : 47% Done
16 Nov 2021 20:35:43,727 DEBUG: Total peptides inserted: 33
16 Nov 2021 20:35:43,730 INFO : Inserting sp|P0A6F5|CH60_ECOLI
16 Nov 2021 20:35:43,753 INFO : 48% Done
16 Nov 2021 20:35:43,775 INFO : 49% Done
16 Nov 2021 20:35:43,797 INFO : 50% Done
16 Nov 2021 20:35:43,819 INFO : 51% Done
16 Nov 2021 20:35:43,862 INFO : 52% Done
16 Nov 2021 20:35:43,883 INFO : 53% Done
16 Nov 2021 20:35:43,906 INFO : 54% Done
16 Nov 2021 20:35:43,949 INFO : 55% Done
16 Nov 2021 20:35:43,970 INFO : 56% Done
16 Nov 2021 20:35:43,993 INFO : 58% Done
16 Nov 2021 20:35:44,048 INFO : 59% Done
16 Nov 2021 20:35:44,070 INFO : 60% Done
16 Nov 2021 20:35:44,091 INFO : 61% Done
16 Nov 2021 20:35:44,114 INFO : 62% Done
16 Nov 2021 20:35:44,150 INFO : 63% Done
16 Nov 2021 20:35:44,172 INFO : 64% Done
16 Nov 2021 20:35:44,194 INFO : 65% Done
16 Nov 2021 20:35:44,233 DEBUG: Total peptides inserted: 22
16 Nov 2021 20:35:44,235 INFO : Inserting sp|P0A6F3|GLPK_ECOLI
16 Nov 2021 20:35:44,239 INFO : 66% Done
16 Nov 2021 20:35:44,261 INFO : 67% Done
16 Nov 2021 20:35:44,283 INFO : 68% Done
16 Nov 2021 20:35:44,305 INFO : 69% Done
16 Nov 2021 20:35:44,346 INFO : 70% Done
16 Nov 2021 20:35:44,368 INFO : 71% Done
16 Nov 2021 20:35:44,390 INFO : 72% Done
16 Nov 2021 20:35:44,428 INFO : 74% Done
16 Nov 2021 20:35:44,484 INFO : 75% Done
16 Nov 2021 20:35:44,525 INFO : 76% Done
16 Nov 2021 20:35:44,547 INFO : 77% Done
16 Nov 2021 20:35:44,568 INFO : 78% Done
16 Nov 2021 20:35:44,609 INFO : 79% Done
16 Nov 2021 20:35:44,630 INFO : 80% Done
16 Nov 2021 20:35:44,652 INFO : 81% Done
16 Nov 2021 20:35:44,673 INFO : 82% Done
16 Nov 2021 20:35:44,714 INFO : 83% Done
16 Nov 2021 20:35:44,735 INFO : 84% Done
16 Nov 2021 20:35:44,754 DEBUG: Total peptides inserted: 23
16 Nov 2021 20:35:44,756 INFO : Inserting sp|P61889|MDH_ECOLI
16 Nov 2021 20:35:44,759 INFO : 85% Done
16 Nov 2021 20:35:44,782 INFO : 86% Done
16 Nov 2021 20:35:44,821 INFO : 88% Done
16 Nov 2021 20:35:44,856 INFO : 89% Done
16 Nov 2021 20:35:44,898 INFO : 90% Done
16 Nov 2021 20:35:44,920 INFO : 91% Done
16 Nov 2021 20:35:44,942 INFO : 92% Done
16 Nov 2021 20:35:44,963 INFO : 93% Done
16 Nov 2021 20:35:45,005 INFO : 94% Done
16 Nov 2021 20:35:45,026 INFO : 95% Done
16 Nov 2021 20:35:45,048 INFO : 96% Done
16 Nov 2021 20:35:45,093 INFO : 97% Done
16 Nov 2021 20:35:45,114 INFO : 98% Done
16 Nov 2021 20:35:45,132 DEBUG: Total peptides inserted: 16
16 Nov 2021 20:35:45,133 INFO : Done parsing Skyline document.
16 Nov 2021 20:35:45,155 INFO : Creating and populating temp tables for Proportion values
16 Nov 2021 20:35:45,197 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
16 Nov 2021 20:35:45,384 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
16 Nov 2021 20:35:45,516 INFO : Cleaning up temp tables
16 Nov 2021 20:35:45,781 INFO : Completed import of Skyline document from TripleTOF6600+_AutoQC_2021-06-04_11-55-17.sky.zip
16 Nov 2021 20:35:45,784 INFO : 100% Done
16 Nov 2021 20:35:45,788 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Ghent%20%20-%20LFQBenchmark%20across%20Instrument%20Platforms_b63ebd1c-2984-103a-bfdd-fea6ddf55ce4/_temp__2021-11-16_19-37-29/export/subfolders/TripleTOF6600+/xar/experiments_and_runs.xar.exploded/Run110934/TripleTOF6600+_AutoQC_2021-06-04_11-55-17.sky.zip into the system
16 Nov 2021 20:35:45,794 INFO : Done importing xar
16 Nov 2021 20:35:45,795 INFO : Loading pages and webpart properties
16 Nov 2021 20:35:45,949 INFO : Done importing pages and webpart properties
16 Nov 2021 20:35:45,949 INFO : Done importing folder archive for TripleTOF6600+
16 Nov 2021 20:35:45,949 INFO : Done importing subfolders and container tabs
16 Nov 2021 20:35:45,949 INFO : 
16 Nov 2021 20:35:45,949 INFO : Experiment import completed successfully.
16 Nov 2021 20:35:45,949 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
16 Nov 2021 20:35:54,082 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
16 Nov 2021 20:35:54,082 INFO : 
16 Nov 2021 20:35:54,082 INFO : Finishing up experiment copy.
16 Nov 2021 20:35:54,084 INFO : Adding runs imported in subfolders.
16 Nov 2021 20:35:54,093 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
16 Nov 2021 20:35:54,094 INFO : Assigning a DOI.
16 Nov 2021 20:35:55,861 INFO : Assigned DOI: 10.6069/ffcw-g217
16 Nov 2021 20:35:55,867 INFO : Updating access URL to point to the new copy of the data.
16 Nov 2021 20:35:55,873 INFO : Setting the 'copied' timestamp and journalExperimentId on the JournalExperiment table.
16 Nov 2021 20:35:55,875 INFO : Removing copy permissions given to journal.
16 Nov 2021 20:35:55,899 INFO : Adding read permissions to all users that are folder admins in the source container.
16 Nov 2021 20:35:55,904 INFO : Setting the TargetedMS folder type to 'Experimental Data'
16 Nov 2021 20:35:55,933 INFO : Updating the 'Raw Data' tab configuration
16 Nov 2021 20:35:55,943 INFO : Updating dataFileUrls for run AutoQC_Peptide_Selection_first5proteins_2021-08-17_15-53-43.sky.zip; targetedms run ID 125131
16 Nov 2021 20:35:55,944 INFO : Updating dataFileUrl...
16 Nov 2021 20:35:55,944 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Ghent%20%20-%20LFQBenchmark%20across%20Instrument%20Platforms_b63ebd1c-2984-103a-bfdd-fea6ddf55ce4/_temp__2021-11-16_19-37-29/export/subfolders/Orbitrap_QEHFX/xar/experiments_and_runs.xar.exploded/Run115726/AutoQC_Peptide_Selection_first5proteins_2021-08-17_15-53-43.sky.zip
16 Nov 2021 20:35:55,944 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/U%20of%20Ghent%20%20-%20LFQBenchmark%20across%20Instrument%20Platforms/Orbitrap_QEHFX/@files/AutoQC_Peptide_Selection_first5proteins_2021-08-17_15-53-43.sky.zip
16 Nov 2021 20:35:55,946 INFO : Updating dataFileUrl...
16 Nov 2021 20:35:55,946 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/U%20of%20Ghent%20%20-%20LFQBenchmark%20across%20Instrument%20Platforms_b63ebd1c-2984-103a-bfdd-fea6ddf55ce4/_temp__2021-11-16_19-37-29/export/subfolders/Orbitrap_QEHFX/xar/experiments_and_runs.xar.exploded/Run115726/AutoQC_Peptide_Selection_first5proteins_2021-08-17_15-53-43/AutoQC_Peptide_Selection_first5proteins.skyd
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16 Nov 2021 20:35:55,972 INFO : Making folder public.
16 Nov 2021 20:35:55,981 INFO : Hiding the Data Pipeline tab.
16 Nov 2021 20:35:56,072 INFO : Emailing submitter.
16 Nov 2021 20:35:56,161 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'