30 Nov 2021 09:12:07,449 INFO : Copying experiment "MRM quantification of circulating CFP-10 in TB patients" from folder /Tulane U - Biochem Hu Lab/qantitative MS of antigens/patients from Italy cohort CFP10 results to /Panorama Public/2021/Tulane U Biochem Hu Lab - patients from Italy cohort CFP10 results
30 Nov 2021 09:12:07,449 INFO : =======================================
30 Nov 2021 09:12:07,829 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
30 Nov 2021 09:12:07,829 INFO :
30 Nov 2021 09:12:07,829 INFO : Exporting experiment.
30 Nov 2021 09:13:10,866 INFO :
30 Nov 2021 09:13:10,866 INFO : Experiment export completed successfully.
30 Nov 2021 09:13:10,867 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
30 Nov 2021 09:13:10,931 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
30 Nov 2021 09:13:10,931 INFO :
30 Nov 2021 09:13:10,931 INFO : Importing experiment.
30 Nov 2021 09:13:10,938 INFO : Loading folder properties (folder type, settings and active modules)
30 Nov 2021 09:13:11,059 INFO : Done importing folder properties (folder type, settings and active modules)
30 Nov 2021 09:13:11,063 INFO : Loading etl definitions
30 Nov 2021 09:13:11,069 INFO : Loading wikis
30 Nov 2021 09:13:11,072 INFO : 0 wikis imported
30 Nov 2021 09:13:11,072 INFO : Done importing wikis
30 Nov 2021 09:13:11,073 INFO : Starting to copy files
30 Nov 2021 09:14:03,525 INFO : Copied 477 files
30 Nov 2021 09:14:03,526 INFO : Ensuring exp.data rows exist for imported files
30 Nov 2021 09:14:06,664 INFO : Starting Sample Type and Data Class import
30 Nov 2021 09:14:06,665 INFO : No types XAR file to process.
30 Nov 2021 09:14:06,665 INFO : Finished importing Sample Types and Data Classes
30 Nov 2021 09:14:06,667 INFO : Loading xar
30 Nov 2021 09:14:06,934 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9363:TargetedMS.ImportSkyZip'
30 Nov 2021 09:14:06,937 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9363:TargetedMS.ImportSkyZip.Core'
30 Nov 2021 09:14:06,941 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9363:TargetedMS.ImportSkyZip.Output'
30 Nov 2021 09:14:06,941 DEBUG: Protocol import complete
30 Nov 2021 09:14:06,944 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-9363:CFP10+result+in+Italy+cohort'
30 Nov 2021 09:14:06,944 DEBUG: Experiment/Run group import complete
30 Nov 2021 09:14:06,961 DEBUG: Protocol action set import complete
30 Nov 2021 09:14:06,980 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9363:TargetedMS.ImportSkyZip'
30 Nov 2021 09:14:06,993 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9363:528fa459-2474-103a-b54f-fea6ddf5779e'
30 Nov 2021 09:14:07,000 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9363:528fa432-2474-103a-b54f-fea6ddf5779e'
30 Nov 2021 09:14:07,000 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9363:TargetedMS.ImportSkyZip.Core'
30 Nov 2021 09:14:07,005 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9363:TargetedMS.ImportSkyZip.Output'
30 Nov 2021 09:14:07,006 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9363:528fa478-2474-103a-b54f-fea6ddf5779e'
30 Nov 2021 09:14:07,021 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9363:TargetedMS.ImportSkyZip'
30 Nov 2021 09:14:07,029 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9363:060ac473-23bc-103a-b54f-fea6ddf5779e'
30 Nov 2021 09:14:07,036 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9363:060ac453-23bc-103a-b54f-fea6ddf5779e'
30 Nov 2021 09:14:07,037 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9363:TargetedMS.ImportSkyZip.Core'
30 Nov 2021 09:14:07,040 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9363:TargetedMS.ImportSkyZip.Output'
30 Nov 2021 09:14:07,041 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9363:060ac477-23bc-103a-b54f-fea6ddf5779e'
30 Nov 2021 09:14:07,054 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9363:TargetedMS.ImportSkyZip'
30 Nov 2021 09:14:07,063 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9363:14cb61c3-2490-103a-b54f-fea6ddf5779e'
30 Nov 2021 09:14:07,069 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9363:14cb61b4-2490-103a-b54f-fea6ddf5779e'
30 Nov 2021 09:14:07,070 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9363:TargetedMS.ImportSkyZip.Core'
30 Nov 2021 09:14:07,073 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9363:TargetedMS.ImportSkyZip.Output'
30 Nov 2021 09:14:07,074 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9363:14cb61ce-2490-103a-b54f-fea6ddf5779e'
30 Nov 2021 09:14:07,088 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9363:TargetedMS.ImportSkyZip'
30 Nov 2021 09:14:07,096 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9363:883e4650-23bb-103a-b54f-fea6ddf5779e'
30 Nov 2021 09:14:07,101 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9363:883e463b-23bb-103a-b54f-fea6ddf5779e'
30 Nov 2021 09:14:07,101 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9363:TargetedMS.ImportSkyZip.Core'
30 Nov 2021 09:14:07,104 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9363:TargetedMS.ImportSkyZip.Output'
30 Nov 2021 09:14:07,105 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9363:883e465b-23bb-103a-b54f-fea6ddf5779e'
30 Nov 2021 09:14:07,115 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9363:TargetedMS.ImportSkyZip'
30 Nov 2021 09:14:07,122 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9363:72b1d673-24a3-103a-b54f-fea6ddf5779e'
30 Nov 2021 09:14:07,127 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9363:72b1d664-24a3-103a-b54f-fea6ddf5779e'
30 Nov 2021 09:14:07,127 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9363:TargetedMS.ImportSkyZip.Core'
30 Nov 2021 09:14:07,131 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9363:TargetedMS.ImportSkyZip.Output'
30 Nov 2021 09:14:07,132 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9363:72b1d67d-24a3-103a-b54f-fea6ddf5779e'
30 Nov 2021 09:14:07,141 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9363:TargetedMS.ImportSkyZip'
30 Nov 2021 09:14:07,148 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9363:883e4b50-23bb-103a-b54f-fea6ddf5779e'
30 Nov 2021 09:14:07,153 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9363:883e4b41-23bb-103a-b54f-fea6ddf5779e'
30 Nov 2021 09:14:07,153 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9363:TargetedMS.ImportSkyZip.Core'
30 Nov 2021 09:14:07,157 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9363:TargetedMS.ImportSkyZip.Output'
30 Nov 2021 09:14:07,157 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9363:883e4b55-23bb-103a-b54f-fea6ddf5779e'
30 Nov 2021 09:14:07,171 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9363:TargetedMS.ImportSkyZip'
30 Nov 2021 09:14:07,179 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9363:883e4997-23bb-103a-b54f-fea6ddf5779e'
30 Nov 2021 09:14:07,184 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9363:883e4982-23bb-103a-b54f-fea6ddf5779e'
30 Nov 2021 09:14:07,185 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9363:TargetedMS.ImportSkyZip.Core'
30 Nov 2021 09:14:07,187 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9363:TargetedMS.ImportSkyZip.Output'
30 Nov 2021 09:14:07,188 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9363:883e499b-23bb-103a-b54f-fea6ddf5779e'
30 Nov 2021 09:14:07,202 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9363:TargetedMS.ImportSkyZip'
30 Nov 2021 09:14:07,208 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9363:883e4fd6-23bb-103a-b54f-fea6ddf5779e'
30 Nov 2021 09:14:07,214 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9363:883e4fc8-23bb-103a-b54f-fea6ddf5779e'
30 Nov 2021 09:14:07,214 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9363:TargetedMS.ImportSkyZip.Core'
30 Nov 2021 09:14:07,217 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9363:TargetedMS.ImportSkyZip.Output'
30 Nov 2021 09:14:07,217 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9363:883e4fdc-23bb-103a-b54f-fea6ddf5779e'
30 Nov 2021 09:14:07,232 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9363:TargetedMS.ImportSkyZip'
30 Nov 2021 09:14:07,240 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9363:060ac312-23bc-103a-b54f-fea6ddf5779e'
30 Nov 2021 09:14:07,245 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9363:060ac303-23bc-103a-b54f-fea6ddf5779e'
30 Nov 2021 09:14:07,245 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9363:TargetedMS.ImportSkyZip.Core'
30 Nov 2021 09:14:07,247 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9363:TargetedMS.ImportSkyZip.Output'
30 Nov 2021 09:14:07,248 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9363:060ac316-23bc-103a-b54f-fea6ddf5779e'
30 Nov 2021 09:14:07,260 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9363:TargetedMS.ImportSkyZip'
30 Nov 2021 09:14:07,265 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9363:060ac1ed-23bc-103a-b54f-fea6ddf5779e'
30 Nov 2021 09:14:07,269 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9363:060ac1df-23bc-103a-b54f-fea6ddf5779e'
30 Nov 2021 09:14:07,269 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9363:TargetedMS.ImportSkyZip.Core'
30 Nov 2021 09:14:07,271 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9363:TargetedMS.ImportSkyZip.Output'
30 Nov 2021 09:14:07,272 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9363:060ac1f6-23bc-103a-b54f-fea6ddf5779e'
30 Nov 2021 09:14:07,277 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121425/CFP-10pep%20peak%20feature%20analysis%20in%20spiked-in%20samples_2021-11-10_10-57-06/CFP-10pep%20peak%20feature%20analysis%20in%20spiked-in%20samples.skyd into the system
30 Nov 2021 09:14:07,278 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121425/CFP-10pep%20peak%20feature%20analysis%20in%20spiked-in%20samples_2021-11-10_10-57-06/CFP-10pep%20peak%20feature%20analysis%20in%20spiked-in%20samples.skyd into the system
30 Nov 2021 09:14:07,278 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121425/CFP-10pep%20peak%20feature%20analysis%20in%20spiked-in%20samples_2021-11-10_10-57-06.sky.zip into the system
30 Nov 2021 09:14:07,280 INFO : Starting import from CFP-10pep peak feature analysis in spiked-in samples_2021-11-10_10-57-06.sky.zip
30 Nov 2021 09:14:07,286 INFO : Starting to import Skyline document from CFP-10pep peak feature analysis in spiked-in samples_2021-11-10_10-57-06.sky.zip
30 Nov 2021 09:14:07,287 INFO : Expanding CFP-10 library.blib
30 Nov 2021 09:14:07,291 INFO : Expanding CFP-10 library.redundant.blib
30 Nov 2021 09:14:07,297 INFO : Expanding CFP-10pep peak feature analysis in spiked-in samples.skyd
30 Nov 2021 09:14:07,306 INFO : Expanding CFP-10pep peak feature analysis in spiked-in samples.sky.view
30 Nov 2021 09:14:07,307 INFO : Expanding CFP-10pep peak feature analysis in spiked-in samples.sky
30 Nov 2021 09:14:07,311 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22
30 Nov 2021 09:14:07,330 INFO : 15% Done
30 Nov 2021 09:14:07,343 DEBUG: Starting to load chromatogram headers
30 Nov 2021 09:14:07,344 DEBUG: Done loading chromatogram headers
30 Nov 2021 09:14:07,472 INFO : Inserting sp|P9WNK5|ESXB_MYCTU
30 Nov 2021 09:14:07,512 INFO : 80% Done
30 Nov 2021 09:14:07,689 DEBUG: Total peptides inserted: 1
30 Nov 2021 09:14:07,691 INFO : Done parsing Skyline document.
30 Nov 2021 09:14:07,696 INFO : No group comparisons found.
30 Nov 2021 09:14:07,697 INFO : Calculating calibration curves
30 Nov 2021 09:14:07,698 DEBUG: Calculating calibration curve for sp|P9WNK5|ESXB_MYCTU, 1 of 1
30 Nov 2021 09:14:07,751 INFO : 98% Done
30 Nov 2021 09:14:07,759 INFO : Done calculating calibration curves.
30 Nov 2021 09:14:07,761 INFO : Creating and populating temp tables for Proportion values
30 Nov 2021 09:14:07,778 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
30 Nov 2021 09:14:07,782 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
30 Nov 2021 09:14:07,783 INFO : Cleaning up temp tables
30 Nov 2021 09:14:09,274 INFO : Completed import of Skyline document from CFP-10pep peak feature analysis in spiked-in samples_2021-11-10_10-57-06.sky.zip
30 Nov 2021 09:14:09,280 INFO : 100% Done
30 Nov 2021 09:14:09,289 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121425/CFP-10pep%20peak%20feature%20analysis%20in%20spiked-in%20samples_2021-11-10_10-57-06.sky.zip into the system
30 Nov 2021 09:14:09,289 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121312/NHP%20TB%20plasma%20CFP10_MRM_2021-11-09_12-52-46/NHP%20TB%20plasma%20CFP10_MRM.skyd into the system
30 Nov 2021 09:14:09,292 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121312/NHP%20TB%20plasma%20CFP10_MRM_2021-11-09_12-52-46/NHP%20TB%20plasma%20CFP10_MRM.skyd into the system
30 Nov 2021 09:14:09,292 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121312/NHP%20TB%20plasma%20CFP10_MRM_2021-11-09_12-52-46.sky.zip into the system
30 Nov 2021 09:14:09,296 INFO : Starting import from NHP TB plasma CFP10_MRM_2021-11-09_12-52-46.sky.zip
30 Nov 2021 09:14:09,303 INFO : Starting to import Skyline document from NHP TB plasma CFP10_MRM_2021-11-09_12-52-46.sky.zip
30 Nov 2021 09:14:09,304 INFO : Expanding CFP-10 library.blib
30 Nov 2021 09:14:09,310 INFO : Expanding CFP-10 library.redundant.blib
30 Nov 2021 09:14:09,326 INFO : Expanding NHP TB plasma CFP10_MRM.skyd
30 Nov 2021 09:14:09,334 INFO : Expanding NHP TB plasma CFP10_MRM.sky.view
30 Nov 2021 09:14:09,335 INFO : Expanding NHP TB plasma CFP10_MRM.sky
30 Nov 2021 09:14:09,339 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22
30 Nov 2021 09:14:09,369 INFO : 15% Done
30 Nov 2021 09:14:09,372 DEBUG: Starting to load chromatogram headers
30 Nov 2021 09:14:09,372 DEBUG: Done loading chromatogram headers
30 Nov 2021 09:14:09,729 INFO : Inserting sp|P9WNK5|ESXB_MYCTU
30 Nov 2021 09:14:09,758 INFO : 80% Done
30 Nov 2021 09:14:09,946 DEBUG: Total peptides inserted: 1
30 Nov 2021 09:14:09,947 INFO : Done parsing Skyline document.
30 Nov 2021 09:14:09,951 INFO : No group comparisons found.
30 Nov 2021 09:14:09,951 INFO : Calculating calibration curves
30 Nov 2021 09:14:09,952 DEBUG: Calculating calibration curve for sp|P9WNK5|ESXB_MYCTU, 1 of 1
30 Nov 2021 09:14:09,980 INFO : 98% Done
30 Nov 2021 09:14:09,982 INFO : Done calculating calibration curves.
30 Nov 2021 09:14:09,984 INFO : Creating and populating temp tables for Proportion values
30 Nov 2021 09:14:10,000 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
30 Nov 2021 09:14:10,003 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
30 Nov 2021 09:14:10,004 INFO : Cleaning up temp tables
30 Nov 2021 09:14:10,228 INFO : Completed import of Skyline document from NHP TB plasma CFP10_MRM_2021-11-09_12-52-46.sky.zip
30 Nov 2021 09:14:10,232 INFO : 100% Done
30 Nov 2021 09:14:10,237 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121312/NHP%20TB%20plasma%20CFP10_MRM_2021-11-09_12-52-46.sky.zip into the system
30 Nov 2021 09:14:10,237 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121429/137%20adult%20TB%20patient%20CFP10_2021-11-10_14-11-19/137%20adult%20TB%20patient%20CFP10.skyd into the system
30 Nov 2021 09:14:10,238 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121429/137%20adult%20TB%20patient%20CFP10_2021-11-10_14-11-19/137%20adult%20TB%20patient%20CFP10.skyd into the system
30 Nov 2021 09:14:10,238 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121429/137%20adult%20TB%20patient%20CFP10_2021-11-10_14-11-19.sky.zip into the system
30 Nov 2021 09:14:10,239 INFO : Starting import from 137 adult TB patient CFP10_2021-11-10_14-11-19.sky.zip
30 Nov 2021 09:14:10,241 INFO : Starting to import Skyline document from 137 adult TB patient CFP10_2021-11-10_14-11-19.sky.zip
30 Nov 2021 09:14:10,244 INFO : Expanding CFP-10 library.blib
30 Nov 2021 09:14:10,247 INFO : Expanding CFP-10 library.redundant.blib
30 Nov 2021 09:14:10,254 INFO : Expanding 137 adult TB patient CFP10.skyd
30 Nov 2021 09:14:10,317 INFO : Expanding 137 adult TB patient CFP10.sky.view
30 Nov 2021 09:14:10,318 INFO : Expanding 137 adult TB patient CFP10.sky
30 Nov 2021 09:14:10,324 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22
30 Nov 2021 09:14:10,334 INFO : 11% Done
30 Nov 2021 09:14:10,352 DEBUG: Starting to load chromatogram headers
30 Nov 2021 09:14:10,353 DEBUG: Done loading chromatogram headers
30 Nov 2021 09:14:10,550 INFO : Inserting sp|P9WNK5|ESXB_MYCTU
30 Nov 2021 09:14:10,594 INFO : 80% Done
30 Nov 2021 09:14:11,145 DEBUG: Total peptides inserted: 1
30 Nov 2021 09:14:11,146 INFO : Done parsing Skyline document.
30 Nov 2021 09:14:11,153 INFO : No group comparisons found.
30 Nov 2021 09:14:11,153 INFO : Calculating calibration curves
30 Nov 2021 09:14:11,154 DEBUG: Calculating calibration curve for sp|P9WNK5|ESXB_MYCTU, 1 of 1
30 Nov 2021 09:14:11,254 INFO : 98% Done
30 Nov 2021 09:14:11,255 INFO : Done calculating calibration curves.
30 Nov 2021 09:14:11,256 INFO : Creating and populating temp tables for Proportion values
30 Nov 2021 09:14:11,273 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
30 Nov 2021 09:14:11,285 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
30 Nov 2021 09:14:11,289 INFO : Cleaning up temp tables
30 Nov 2021 09:14:11,502 INFO : Completed import of Skyline document from 137 adult TB patient CFP10_2021-11-10_14-11-19.sky.zip
30 Nov 2021 09:14:11,506 INFO : 100% Done
30 Nov 2021 09:14:11,510 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121429/137%20adult%20TB%20patient%20CFP10_2021-11-10_14-11-19.sky.zip into the system
30 Nov 2021 09:14:11,510 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121305/10%20adult%20TB%20patient%20with%20repeating%20CFP10_2021-11-09_12-49-05/10%20adult%20TB%20patient%20with%20repeating%20CFP10.skyd into the system
30 Nov 2021 09:14:11,511 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121305/10%20adult%20TB%20patient%20with%20repeating%20CFP10_2021-11-09_12-49-05/10%20adult%20TB%20patient%20with%20repeating%20CFP10.skyd into the system
30 Nov 2021 09:14:11,511 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121305/10%20adult%20TB%20patient%20with%20repeating%20CFP10_2021-11-09_12-49-05.sky.zip into the system
30 Nov 2021 09:14:11,512 INFO : Starting import from 10 adult TB patient with repeating CFP10_2021-11-09_12-49-05.sky.zip
30 Nov 2021 09:14:11,515 INFO : Starting to import Skyline document from 10 adult TB patient with repeating CFP10_2021-11-09_12-49-05.sky.zip
30 Nov 2021 09:14:11,515 INFO : Expanding CFP-10 library.blib
30 Nov 2021 09:14:11,519 INFO : Expanding CFP-10 library.redundant.blib
30 Nov 2021 09:14:11,525 INFO : Expanding 10 adult TB patient with repeating CFP10.skyd
30 Nov 2021 09:14:11,533 INFO : Expanding 10 adult TB patient with repeating CFP10.sky.view
30 Nov 2021 09:14:11,533 INFO : Expanding 10 adult TB patient with repeating CFP10.sky
30 Nov 2021 09:14:11,535 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22
30 Nov 2021 09:14:11,541 INFO : 14% Done
30 Nov 2021 09:14:11,544 DEBUG: Starting to load chromatogram headers
30 Nov 2021 09:14:11,544 DEBUG: Done loading chromatogram headers
30 Nov 2021 09:14:11,638 INFO : Inserting sp|P9WNK5|ESXB_MYCTU
30 Nov 2021 09:14:11,650 INFO : 80% Done
30 Nov 2021 09:14:11,725 DEBUG: Total peptides inserted: 1
30 Nov 2021 09:14:11,726 INFO : Done parsing Skyline document.
30 Nov 2021 09:14:11,729 INFO : No group comparisons found.
30 Nov 2021 09:14:11,729 INFO : Calculating calibration curves
30 Nov 2021 09:14:11,730 DEBUG: Calculating calibration curve for sp|P9WNK5|ESXB_MYCTU, 1 of 1
30 Nov 2021 09:14:11,763 INFO : 98% Done
30 Nov 2021 09:14:11,764 INFO : Done calculating calibration curves.
30 Nov 2021 09:14:11,765 INFO : Creating and populating temp tables for Proportion values
30 Nov 2021 09:14:11,778 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
30 Nov 2021 09:14:11,780 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
30 Nov 2021 09:14:11,781 INFO : Cleaning up temp tables
30 Nov 2021 09:14:11,984 INFO : Completed import of Skyline document from 10 adult TB patient with repeating CFP10_2021-11-09_12-49-05.sky.zip
30 Nov 2021 09:14:11,987 INFO : 100% Done
30 Nov 2021 09:14:11,991 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121305/10%20adult%20TB%20patient%20with%20repeating%20CFP10_2021-11-09_12-49-05.sky.zip into the system
30 Nov 2021 09:14:11,991 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121432/PUSH%20pediatric%20cohort%20CFP10_MRM_2021-11-10_16-33-36/PUSH%20pediatric%20cohort%20CFP10_MRM.skyd into the system
30 Nov 2021 09:14:11,991 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121432/PUSH%20pediatric%20cohort%20CFP10_MRM_2021-11-10_16-33-36/PUSH%20pediatric%20cohort%20CFP10_MRM.skyd into the system
30 Nov 2021 09:14:11,991 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121432/PUSH%20pediatric%20cohort%20CFP10_MRM_2021-11-10_16-33-36.sky.zip into the system
30 Nov 2021 09:14:11,993 INFO : Starting import from PUSH pediatric cohort CFP10_MRM_2021-11-10_16-33-36.sky.zip
30 Nov 2021 09:14:11,995 INFO : Starting to import Skyline document from PUSH pediatric cohort CFP10_MRM_2021-11-10_16-33-36.sky.zip
30 Nov 2021 09:14:11,996 INFO : Expanding CFP-10 library.blib
30 Nov 2021 09:14:12,000 INFO : Expanding CFP-10 library.redundant.blib
30 Nov 2021 09:14:12,006 INFO : Expanding PUSH pediatric cohort CFP10_MRM.skyd
30 Nov 2021 09:14:12,016 INFO : Expanding PUSH pediatric cohort CFP10_MRM.sky.view
30 Nov 2021 09:14:12,017 INFO : Expanding PUSH pediatric cohort CFP10_MRM.sky
30 Nov 2021 09:14:12,019 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22
30 Nov 2021 09:14:12,025 INFO : 14% Done
30 Nov 2021 09:14:12,028 DEBUG: Starting to load chromatogram headers
30 Nov 2021 09:14:12,028 DEBUG: Done loading chromatogram headers
30 Nov 2021 09:14:12,098 INFO : Inserting sp|P9WNK5|ESXB_MYCTU
30 Nov 2021 09:14:12,109 INFO : 80% Done
30 Nov 2021 09:14:12,194 DEBUG: Total peptides inserted: 1
30 Nov 2021 09:14:12,195 INFO : Done parsing Skyline document.
30 Nov 2021 09:14:12,198 INFO : No group comparisons found.
30 Nov 2021 09:14:12,198 INFO : Calculating calibration curves
30 Nov 2021 09:14:12,198 DEBUG: Calculating calibration curve for sp|P9WNK5|ESXB_MYCTU, 1 of 1
30 Nov 2021 09:14:12,226 INFO : 98% Done
30 Nov 2021 09:14:12,227 INFO : Done calculating calibration curves.
30 Nov 2021 09:14:12,227 INFO : Creating and populating temp tables for Proportion values
30 Nov 2021 09:14:12,242 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
30 Nov 2021 09:14:12,244 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
30 Nov 2021 09:14:12,247 INFO : Cleaning up temp tables
30 Nov 2021 09:14:12,451 INFO : Completed import of Skyline document from PUSH pediatric cohort CFP10_MRM_2021-11-10_16-33-36.sky.zip
30 Nov 2021 09:14:12,455 INFO : 100% Done
30 Nov 2021 09:14:12,460 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121432/PUSH%20pediatric%20cohort%20CFP10_MRM_2021-11-10_16-33-36.sky.zip into the system
30 Nov 2021 09:14:12,460 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121307/31%20pediatric%20participants%20%20from%20Dominican%20Republic%20cohort_2021-11-09_12-50-10/31%20pediatric%20participants%20%20from%20Dominican%20Republic%20cohort.skyd into the system
30 Nov 2021 09:14:12,461 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121307/31%20pediatric%20participants%20%20from%20Dominican%20Republic%20cohort_2021-11-09_12-50-10/31%20pediatric%20participants%20%20from%20Dominican%20Republic%20cohort.skyd into the system
30 Nov 2021 09:14:12,461 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121307/31%20pediatric%20participants%20%20from%20Dominican%20Republic%20cohort_2021-11-09_12-50-10.sky.zip into the system
30 Nov 2021 09:14:12,462 INFO : Starting import from 31 pediatric participants from Dominican Republic cohort_2021-11-09_12-50-10.sky.zip
30 Nov 2021 09:14:12,465 INFO : Starting to import Skyline document from 31 pediatric participants from Dominican Republic cohort_2021-11-09_12-50-10.sky.zip
30 Nov 2021 09:14:12,466 INFO : Expanding CFP-10 library.blib
30 Nov 2021 09:14:12,469 INFO : Expanding CFP-10 library.redundant.blib
30 Nov 2021 09:14:12,475 INFO : Expanding 31 pediatric participants from Dominican Republic cohort.skyd
30 Nov 2021 09:14:12,489 INFO : Expanding 31 pediatric participants from Dominican Republic cohort.sky.view
30 Nov 2021 09:14:12,490 INFO : Expanding 31 pediatric participants from Dominican Republic cohort.sky
30 Nov 2021 09:14:12,493 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22
30 Nov 2021 09:14:12,498 INFO : 12% Done
30 Nov 2021 09:14:12,502 DEBUG: Starting to load chromatogram headers
30 Nov 2021 09:14:12,502 DEBUG: Done loading chromatogram headers
30 Nov 2021 09:14:12,609 INFO : 14% Done
30 Nov 2021 09:14:12,614 INFO : Inserting sp|P9WNK5|ESXB_MYCTU
30 Nov 2021 09:14:12,627 INFO : 80% Done
30 Nov 2021 09:14:12,757 DEBUG: Total peptides inserted: 1
30 Nov 2021 09:14:12,760 INFO : Done parsing Skyline document.
30 Nov 2021 09:14:12,764 INFO : No group comparisons found.
30 Nov 2021 09:14:12,765 INFO : Calculating calibration curves
30 Nov 2021 09:14:12,766 DEBUG: Calculating calibration curve for sp|P9WNK5|ESXB_MYCTU, 1 of 1
30 Nov 2021 09:14:12,808 INFO : 98% Done
30 Nov 2021 09:14:12,809 INFO : Done calculating calibration curves.
30 Nov 2021 09:14:12,810 INFO : Creating and populating temp tables for Proportion values
30 Nov 2021 09:14:12,824 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
30 Nov 2021 09:14:12,827 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
30 Nov 2021 09:14:12,829 INFO : Cleaning up temp tables
30 Nov 2021 09:14:13,034 INFO : Completed import of Skyline document from 31 pediatric participants from Dominican Republic cohort_2021-11-09_12-50-10.sky.zip
30 Nov 2021 09:14:13,037 INFO : 100% Done
30 Nov 2021 09:14:13,040 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121307/31%20pediatric%20participants%20%20from%20Dominican%20Republic%20cohort_2021-11-09_12-50-10.sky.zip into the system
30 Nov 2021 09:14:13,041 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121306/18%20adult%20TB%20patient%20with%20two%20sampling%20points%20CFP10_2021-11-09_12-49-48/18%20adult%20TB%20patient%20with%20two%20sampling%20points%20CFP10.skyd into the system
30 Nov 2021 09:14:13,041 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121306/18%20adult%20TB%20patient%20with%20two%20sampling%20points%20CFP10_2021-11-09_12-49-48/18%20adult%20TB%20patient%20with%20two%20sampling%20points%20CFP10.skyd into the system
30 Nov 2021 09:14:13,041 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121306/18%20adult%20TB%20patient%20with%20two%20sampling%20points%20CFP10_2021-11-09_12-49-48.sky.zip into the system
30 Nov 2021 09:14:13,043 INFO : Starting import from 18 adult TB patient with two sampling points CFP10_2021-11-09_12-49-48.sky.zip
30 Nov 2021 09:14:13,046 INFO : Starting to import Skyline document from 18 adult TB patient with two sampling points CFP10_2021-11-09_12-49-48.sky.zip
30 Nov 2021 09:14:13,048 INFO : Expanding CFP-10 library.blib
30 Nov 2021 09:14:13,051 INFO : Expanding CFP-10 library.redundant.blib
30 Nov 2021 09:14:13,057 INFO : Expanding 18 adult TB patient with two sampling points CFP10.skyd
30 Nov 2021 09:14:13,071 INFO : Expanding 18 adult TB patient with two sampling points CFP10.sky.view
30 Nov 2021 09:14:13,071 INFO : Expanding 18 adult TB patient with two sampling points CFP10.sky
30 Nov 2021 09:14:13,074 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22
30 Nov 2021 09:14:13,079 INFO : 12% Done
30 Nov 2021 09:14:13,084 DEBUG: Starting to load chromatogram headers
30 Nov 2021 09:14:13,084 DEBUG: Done loading chromatogram headers
30 Nov 2021 09:14:13,180 INFO : Inserting sp|P9WNK5|ESXB_MYCTU
30 Nov 2021 09:14:13,193 INFO : 80% Done
30 Nov 2021 09:14:13,341 DEBUG: Total peptides inserted: 1
30 Nov 2021 09:14:13,342 INFO : Done parsing Skyline document.
30 Nov 2021 09:14:13,345 INFO : No group comparisons found.
30 Nov 2021 09:14:13,345 INFO : Calculating calibration curves
30 Nov 2021 09:14:13,346 DEBUG: Calculating calibration curve for sp|P9WNK5|ESXB_MYCTU, 1 of 1
30 Nov 2021 09:14:13,383 INFO : 98% Done
30 Nov 2021 09:14:13,384 INFO : Done calculating calibration curves.
30 Nov 2021 09:14:13,385 INFO : Creating and populating temp tables for Proportion values
30 Nov 2021 09:14:13,399 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
30 Nov 2021 09:14:13,402 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
30 Nov 2021 09:14:13,404 INFO : Cleaning up temp tables
30 Nov 2021 09:14:13,606 INFO : Completed import of Skyline document from 18 adult TB patient with two sampling points CFP10_2021-11-09_12-49-48.sky.zip
30 Nov 2021 09:14:13,610 INFO : 100% Done
30 Nov 2021 09:14:13,614 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121306/18%20adult%20TB%20patient%20with%20two%20sampling%20points%20CFP10_2021-11-09_12-49-48.sky.zip into the system
30 Nov 2021 09:14:13,614 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121309/CFP-10%20LOD%20estimation_2021-11-09_12-51-33/CFP-10%20LOD%20estimation.skyd into the system
30 Nov 2021 09:14:13,615 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121309/CFP-10%20LOD%20estimation_2021-11-09_12-51-33/CFP-10%20LOD%20estimation.skyd into the system
30 Nov 2021 09:14:13,615 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121309/CFP-10%20LOD%20estimation_2021-11-09_12-51-33.sky.zip into the system
30 Nov 2021 09:14:13,616 INFO : Starting import from CFP-10 LOD estimation_2021-11-09_12-51-33.sky.zip
30 Nov 2021 09:14:13,619 INFO : Starting to import Skyline document from CFP-10 LOD estimation_2021-11-09_12-51-33.sky.zip
30 Nov 2021 09:14:13,619 INFO : Expanding CFP-10 library.blib
30 Nov 2021 09:14:13,623 INFO : Expanding CFP-10 library.redundant.blib
30 Nov 2021 09:14:13,629 INFO : Expanding CFP-10 LOD estimation.skyd
30 Nov 2021 09:14:13,633 INFO : Expanding CFP-10 LOD estimation.sky.view
30 Nov 2021 09:14:13,633 INFO : Expanding CFP-10 LOD estimation.sky
30 Nov 2021 09:14:13,635 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22
30 Nov 2021 09:14:13,640 INFO : 14% Done
30 Nov 2021 09:14:13,641 DEBUG: Starting to load chromatogram headers
30 Nov 2021 09:14:13,641 DEBUG: Done loading chromatogram headers
30 Nov 2021 09:14:13,691 INFO : 18% Done
30 Nov 2021 09:14:13,694 INFO : Inserting sp|P9WNK5|ESXB_MYCTU
30 Nov 2021 09:14:13,701 INFO : 80% Done
30 Nov 2021 09:14:13,743 DEBUG: Total peptides inserted: 1
30 Nov 2021 09:14:13,744 INFO : Done parsing Skyline document.
30 Nov 2021 09:14:13,746 INFO : No group comparisons found.
30 Nov 2021 09:14:13,746 INFO : Calculating calibration curves
30 Nov 2021 09:14:13,748 DEBUG: Calculating calibration curve for sp|P9WNK5|ESXB_MYCTU, 1 of 1
30 Nov 2021 09:14:13,767 INFO : 98% Done
30 Nov 2021 09:14:13,768 INFO : Done calculating calibration curves.
30 Nov 2021 09:14:13,769 INFO : Creating and populating temp tables for Proportion values
30 Nov 2021 09:14:13,781 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
30 Nov 2021 09:14:13,782 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
30 Nov 2021 09:14:13,783 INFO : Cleaning up temp tables
30 Nov 2021 09:14:13,983 INFO : Completed import of Skyline document from CFP-10 LOD estimation_2021-11-09_12-51-33.sky.zip
30 Nov 2021 09:14:13,986 INFO : 100% Done
30 Nov 2021 09:14:13,990 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121309/CFP-10%20LOD%20estimation_2021-11-09_12-51-33.sky.zip into the system
30 Nov 2021 09:14:13,990 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121311/NHP%20TB%20BAL%20CFP10_MRM_2021-11-09_12-52-18/NHP%20TB%20BAL%20CFP10_MRM.skyd into the system
30 Nov 2021 09:14:13,990 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121311/NHP%20TB%20BAL%20CFP10_MRM_2021-11-09_12-52-18/NHP%20TB%20BAL%20CFP10_MRM.skyd into the system
30 Nov 2021 09:14:13,990 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121311/NHP%20TB%20BAL%20CFP10_MRM_2021-11-09_12-52-18.sky.zip into the system
30 Nov 2021 09:14:13,992 INFO : Starting import from NHP TB BAL CFP10_MRM_2021-11-09_12-52-18.sky.zip
30 Nov 2021 09:14:13,994 INFO : Starting to import Skyline document from NHP TB BAL CFP10_MRM_2021-11-09_12-52-18.sky.zip
30 Nov 2021 09:14:13,994 INFO : Expanding CFP-10 library.blib
30 Nov 2021 09:14:13,998 INFO : Expanding CFP-10 library.redundant.blib
30 Nov 2021 09:14:14,003 INFO : Expanding NHP TB BAL CFP10_MRM.skyd
30 Nov 2021 09:14:14,009 INFO : Expanding NHP TB BAL CFP10_MRM.sky.view
30 Nov 2021 09:14:14,009 INFO : Expanding NHP TB BAL CFP10_MRM.sky
30 Nov 2021 09:14:14,012 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22
30 Nov 2021 09:14:14,017 INFO : 15% Done
30 Nov 2021 09:14:14,019 DEBUG: Starting to load chromatogram headers
30 Nov 2021 09:14:14,019 DEBUG: Done loading chromatogram headers
30 Nov 2021 09:14:14,074 INFO : Inserting sp|P9WNK5|ESXB_MYCTU
30 Nov 2021 09:14:14,082 INFO : 80% Done
30 Nov 2021 09:14:14,133 DEBUG: Total peptides inserted: 1
30 Nov 2021 09:14:14,134 INFO : Done parsing Skyline document.
30 Nov 2021 09:14:14,138 INFO : No group comparisons found.
30 Nov 2021 09:14:14,138 INFO : Calculating calibration curves
30 Nov 2021 09:14:14,138 DEBUG: Calculating calibration curve for sp|P9WNK5|ESXB_MYCTU, 1 of 1
30 Nov 2021 09:14:14,172 INFO : 98% Done
30 Nov 2021 09:14:14,173 INFO : Done calculating calibration curves.
30 Nov 2021 09:14:14,174 INFO : Creating and populating temp tables for Proportion values
30 Nov 2021 09:14:14,196 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
30 Nov 2021 09:14:14,199 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
30 Nov 2021 09:14:14,200 INFO : Cleaning up temp tables
30 Nov 2021 09:14:14,404 INFO : Completed import of Skyline document from NHP TB BAL CFP10_MRM_2021-11-09_12-52-18.sky.zip
30 Nov 2021 09:14:14,407 INFO : 100% Done
30 Nov 2021 09:14:14,410 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121311/NHP%20TB%20BAL%20CFP10_MRM_2021-11-09_12-52-18.sky.zip into the system
30 Nov 2021 09:14:14,410 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121310/CFP-10%20standard%20curve_2021-11-09_12-51-58/CFP-10%20standard%20curve.skyd into the system
30 Nov 2021 09:14:14,411 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121310/CFP-10%20standard%20curve_2021-11-09_12-51-58/CFP-10%20standard%20curve.skyd into the system
30 Nov 2021 09:14:14,411 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121310/CFP-10%20standard%20curve_2021-11-09_12-51-58.sky.zip into the system
30 Nov 2021 09:14:14,412 INFO : Starting import from CFP-10 standard curve_2021-11-09_12-51-58.sky.zip
30 Nov 2021 09:14:14,414 INFO : Starting to import Skyline document from CFP-10 standard curve_2021-11-09_12-51-58.sky.zip
30 Nov 2021 09:14:14,415 INFO : Expanding CFP-10 library.blib
30 Nov 2021 09:14:14,418 INFO : Expanding CFP-10 library.redundant.blib
30 Nov 2021 09:14:14,424 INFO : Expanding CFP-10 standard curve.skyd
30 Nov 2021 09:14:14,428 INFO : Expanding CFP-10 standard curve.sky.view
30 Nov 2021 09:14:14,428 INFO : Expanding CFP-10 standard curve.sky
30 Nov 2021 09:14:14,430 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22
30 Nov 2021 09:14:14,435 INFO : 14% Done
30 Nov 2021 09:14:14,436 DEBUG: Starting to load chromatogram headers
30 Nov 2021 09:14:14,437 DEBUG: Done loading chromatogram headers
30 Nov 2021 09:14:14,488 INFO : 20% Done
30 Nov 2021 09:14:14,491 INFO : Inserting sp|P9WNK5|ESXB_MYCTU
30 Nov 2021 09:14:14,497 INFO : 80% Done
30 Nov 2021 09:14:14,540 DEBUG: Total peptides inserted: 1
30 Nov 2021 09:14:14,541 INFO : Done parsing Skyline document.
30 Nov 2021 09:14:14,543 INFO : No group comparisons found.
30 Nov 2021 09:14:14,543 INFO : Calculating calibration curves
30 Nov 2021 09:14:14,544 DEBUG: Calculating calibration curve for sp|P9WNK5|ESXB_MYCTU, 1 of 1
30 Nov 2021 09:14:14,564 INFO : 98% Done
30 Nov 2021 09:14:14,565 INFO : Done calculating calibration curves.
30 Nov 2021 09:14:14,566 INFO : Creating and populating temp tables for Proportion values
30 Nov 2021 09:14:14,579 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
30 Nov 2021 09:14:14,580 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
30 Nov 2021 09:14:14,581 INFO : Cleaning up temp tables
30 Nov 2021 09:14:14,774 INFO : Completed import of Skyline document from CFP-10 standard curve_2021-11-09_12-51-58.sky.zip
30 Nov 2021 09:14:14,777 INFO : 100% Done
30 Nov 2021 09:14:14,780 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121310/CFP-10%20standard%20curve_2021-11-09_12-51-58.sky.zip into the system
30 Nov 2021 09:14:14,822 INFO : Done importing xar
30 Nov 2021 09:14:14,825 INFO : Loading pages and webpart properties
30 Nov 2021 09:14:14,901 INFO : Done importing pages and webpart properties
30 Nov 2021 09:14:14,902 INFO :
30 Nov 2021 09:14:14,902 INFO : Experiment import completed successfully.
30 Nov 2021 09:14:14,902 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
30 Nov 2021 09:14:14,961 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
30 Nov 2021 09:14:14,961 INFO :
30 Nov 2021 09:14:14,961 INFO : Finishing up experiment copy.
30 Nov 2021 09:14:14,964 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
30 Nov 2021 09:14:14,967 INFO : Copying ProteomeXchange ID from the previous copy of the data.
30 Nov 2021 09:14:14,968 INFO : Copying DOI from the previous copy of the data.
30 Nov 2021 09:14:14,972 INFO : Updating access URL to point to the new copy of the data.
30 Nov 2021 09:14:14,977 INFO : Setting the 'copied' timestamp and journalExperimentId on the JournalExperiment table.
30 Nov 2021 09:14:14,978 INFO : Removing copy permissions given to journal.
30 Nov 2021 09:14:14,995 INFO : Adding read permissions to all users that are folder admins in the source container.
30 Nov 2021 09:14:14,997 INFO : Adding read permissions to all users that had read access to previous copy.
30 Nov 2021 09:14:15,011 INFO : Setting the TargetedMS folder type to 'Experimental Data'
30 Nov 2021 09:14:15,023 INFO : Updating the 'Raw Data' tab configuration
30 Nov 2021 09:14:15,027 INFO : Updating dataFileUrls for run CFP-10pep peak feature analysis in spiked-in samples_2021-11-10_10-57-06.sky.zip; targetedms run ID 125887
30 Nov 2021 09:14:15,027 INFO : Updating dataFileUrl...
30 Nov 2021 09:14:15,027 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121425/CFP-10pep%20peak%20feature%20analysis%20in%20spiked-in%20samples_2021-11-10_10-57-06.sky.zip
30 Nov 2021 09:14:15,028 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results/@files/CFP-10pep%20peak%20feature%20analysis%20in%20spiked-in%20samples_2021-11-10_10-57-06.sky.zip
30 Nov 2021 09:14:15,031 INFO : Updating dataFileUrl...
30 Nov 2021 09:14:15,031 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121425/CFP-10pep%20peak%20feature%20analysis%20in%20spiked-in%20samples_2021-11-10_10-57-06/CFP-10pep%20peak%20feature%20analysis%20in%20spiked-in%20samples.skyd
30 Nov 2021 09:14:15,031 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results/@files/CFP-10pep%20peak%20feature%20analysis%20in%20spiked-in%20samples_2021-11-10_10-57-06/CFP-10pep%20peak%20feature%20analysis%20in%20spiked-in%20samples.skyd
30 Nov 2021 09:14:15,036 INFO : Updating dataFileUrls for run NHP TB plasma CFP10_MRM_2021-11-09_12-52-46.sky.zip; targetedms run ID 125888
30 Nov 2021 09:14:15,037 INFO : Updating dataFileUrl...
30 Nov 2021 09:14:15,037 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121312/NHP%20TB%20plasma%20CFP10_MRM_2021-11-09_12-52-46/NHP%20TB%20plasma%20CFP10_MRM.skyd
30 Nov 2021 09:14:15,038 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results/@files/NHP%20TB%20plasma%20CFP10_MRM_2021-11-09_12-52-46/NHP%20TB%20plasma%20CFP10_MRM.skyd
30 Nov 2021 09:14:15,040 INFO : Updating dataFileUrl...
30 Nov 2021 09:14:15,040 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121312/NHP%20TB%20plasma%20CFP10_MRM_2021-11-09_12-52-46.sky.zip
30 Nov 2021 09:14:15,041 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results/@files/NHP%20TB%20plasma%20CFP10_MRM_2021-11-09_12-52-46.sky.zip
30 Nov 2021 09:14:15,045 INFO : Updating dataFileUrls for run 137 adult TB patient CFP10_2021-11-10_14-11-19.sky.zip; targetedms run ID 125889
30 Nov 2021 09:14:15,045 INFO : Updating dataFileUrl...
30 Nov 2021 09:14:15,045 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121429/137%20adult%20TB%20patient%20CFP10_2021-11-10_14-11-19/137%20adult%20TB%20patient%20CFP10.skyd
30 Nov 2021 09:14:15,046 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results/@files/137%20adult%20TB%20patient%20CFP10_2021-11-10_14-11-19/137%20adult%20TB%20patient%20CFP10.skyd
30 Nov 2021 09:14:15,048 INFO : Updating dataFileUrl...
30 Nov 2021 09:14:15,048 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121429/137%20adult%20TB%20patient%20CFP10_2021-11-10_14-11-19.sky.zip
30 Nov 2021 09:14:15,048 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results/@files/137%20adult%20TB%20patient%20CFP10_2021-11-10_14-11-19.sky.zip
30 Nov 2021 09:14:15,052 INFO : Updating dataFileUrls for run 10 adult TB patient with repeating CFP10_2021-11-09_12-49-05.sky.zip; targetedms run ID 125890
30 Nov 2021 09:14:15,052 INFO : Updating dataFileUrl...
30 Nov 2021 09:14:15,052 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121305/10%20adult%20TB%20patient%20with%20repeating%20CFP10_2021-11-09_12-49-05/10%20adult%20TB%20patient%20with%20repeating%20CFP10.skyd
30 Nov 2021 09:14:15,052 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results/@files/10%20adult%20TB%20patient%20with%20repeating%20CFP10_2021-11-09_12-49-05/10%20adult%20TB%20patient%20with%20repeating%20CFP10.skyd
30 Nov 2021 09:14:15,054 INFO : Updating dataFileUrl...
30 Nov 2021 09:14:15,054 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121305/10%20adult%20TB%20patient%20with%20repeating%20CFP10_2021-11-09_12-49-05.sky.zip
30 Nov 2021 09:14:15,054 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results/@files/10%20adult%20TB%20patient%20with%20repeating%20CFP10_2021-11-09_12-49-05.sky.zip
30 Nov 2021 09:14:15,058 INFO : Updating dataFileUrls for run PUSH pediatric cohort CFP10_MRM_2021-11-10_16-33-36.sky.zip; targetedms run ID 125891
30 Nov 2021 09:14:15,059 INFO : Updating dataFileUrl...
30 Nov 2021 09:14:15,059 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121432/PUSH%20pediatric%20cohort%20CFP10_MRM_2021-11-10_16-33-36/PUSH%20pediatric%20cohort%20CFP10_MRM.skyd
30 Nov 2021 09:14:15,059 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results/@files/PUSH%20pediatric%20cohort%20CFP10_MRM_2021-11-10_16-33-36/PUSH%20pediatric%20cohort%20CFP10_MRM.skyd
30 Nov 2021 09:14:15,061 INFO : Updating dataFileUrl...
30 Nov 2021 09:14:15,061 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121432/PUSH%20pediatric%20cohort%20CFP10_MRM_2021-11-10_16-33-36.sky.zip
30 Nov 2021 09:14:15,061 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results/@files/PUSH%20pediatric%20cohort%20CFP10_MRM_2021-11-10_16-33-36.sky.zip
30 Nov 2021 09:14:15,065 INFO : Updating dataFileUrls for run 31 pediatric participants from Dominican Republic cohort_2021-11-09_12-50-10.sky.zip; targetedms run ID 125892
30 Nov 2021 09:14:15,065 INFO : Updating dataFileUrl...
30 Nov 2021 09:14:15,065 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121307/31%20pediatric%20participants%20%20from%20Dominican%20Republic%20cohort_2021-11-09_12-50-10/31%20pediatric%20participants%20%20from%20Dominican%20Republic%20cohort.skyd
30 Nov 2021 09:14:15,065 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results/@files/31%20pediatric%20participants%20%20from%20Dominican%20Republic%20cohort_2021-11-09_12-50-10/31%20pediatric%20participants%20%20from%20Dominican%20Republic%20cohort.skyd
30 Nov 2021 09:14:15,067 INFO : Updating dataFileUrl...
30 Nov 2021 09:14:15,067 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121307/31%20pediatric%20participants%20%20from%20Dominican%20Republic%20cohort_2021-11-09_12-50-10.sky.zip
30 Nov 2021 09:14:15,068 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results/@files/31%20pediatric%20participants%20%20from%20Dominican%20Republic%20cohort_2021-11-09_12-50-10.sky.zip
30 Nov 2021 09:14:15,071 INFO : Updating dataFileUrls for run 18 adult TB patient with two sampling points CFP10_2021-11-09_12-49-48.sky.zip; targetedms run ID 125893
30 Nov 2021 09:14:15,072 INFO : Updating dataFileUrl...
30 Nov 2021 09:14:15,072 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121306/18%20adult%20TB%20patient%20with%20two%20sampling%20points%20CFP10_2021-11-09_12-49-48.sky.zip
30 Nov 2021 09:14:15,072 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results/@files/18%20adult%20TB%20patient%20with%20two%20sampling%20points%20CFP10_2021-11-09_12-49-48.sky.zip
30 Nov 2021 09:14:15,074 INFO : Updating dataFileUrl...
30 Nov 2021 09:14:15,074 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121306/18%20adult%20TB%20patient%20with%20two%20sampling%20points%20CFP10_2021-11-09_12-49-48/18%20adult%20TB%20patient%20with%20two%20sampling%20points%20CFP10.skyd
30 Nov 2021 09:14:15,074 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results/@files/18%20adult%20TB%20patient%20with%20two%20sampling%20points%20CFP10_2021-11-09_12-49-48/18%20adult%20TB%20patient%20with%20two%20sampling%20points%20CFP10.skyd
30 Nov 2021 09:14:15,078 INFO : Updating dataFileUrls for run CFP-10 LOD estimation_2021-11-09_12-51-33.sky.zip; targetedms run ID 125894
30 Nov 2021 09:14:15,078 INFO : Updating dataFileUrl...
30 Nov 2021 09:14:15,078 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121309/CFP-10%20LOD%20estimation_2021-11-09_12-51-33/CFP-10%20LOD%20estimation.skyd
30 Nov 2021 09:14:15,078 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results/@files/CFP-10%20LOD%20estimation_2021-11-09_12-51-33/CFP-10%20LOD%20estimation.skyd
30 Nov 2021 09:14:15,080 INFO : Updating dataFileUrl...
30 Nov 2021 09:14:15,080 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121309/CFP-10%20LOD%20estimation_2021-11-09_12-51-33.sky.zip
30 Nov 2021 09:14:15,080 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results/@files/CFP-10%20LOD%20estimation_2021-11-09_12-51-33.sky.zip
30 Nov 2021 09:14:15,083 INFO : Updating dataFileUrls for run NHP TB BAL CFP10_MRM_2021-11-09_12-52-18.sky.zip; targetedms run ID 125895
30 Nov 2021 09:14:15,084 INFO : Updating dataFileUrl...
30 Nov 2021 09:14:15,084 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121311/NHP%20TB%20BAL%20CFP10_MRM_2021-11-09_12-52-18/NHP%20TB%20BAL%20CFP10_MRM.skyd
30 Nov 2021 09:14:15,084 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results/@files/NHP%20TB%20BAL%20CFP10_MRM_2021-11-09_12-52-18/NHP%20TB%20BAL%20CFP10_MRM.skyd
30 Nov 2021 09:14:15,086 INFO : Updating dataFileUrl...
30 Nov 2021 09:14:15,086 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121311/NHP%20TB%20BAL%20CFP10_MRM_2021-11-09_12-52-18.sky.zip
30 Nov 2021 09:14:15,086 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results/@files/NHP%20TB%20BAL%20CFP10_MRM_2021-11-09_12-52-18.sky.zip
30 Nov 2021 09:14:15,089 INFO : Updating dataFileUrls for run CFP-10 standard curve_2021-11-09_12-51-58.sky.zip; targetedms run ID 125896
30 Nov 2021 09:14:15,090 INFO : Updating dataFileUrl...
30 Nov 2021 09:14:15,090 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121310/CFP-10%20standard%20curve_2021-11-09_12-51-58/CFP-10%20standard%20curve.skyd
30 Nov 2021 09:14:15,090 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results/@files/CFP-10%20standard%20curve_2021-11-09_12-51-58/CFP-10%20standard%20curve.skyd
30 Nov 2021 09:14:15,092 INFO : Updating dataFileUrl...
30 Nov 2021 09:14:15,092 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results_2688b99e-342e-103a-bfdd-fea6ddf55ce4/_temp__2021-11-30_09-12-07/export/xar/experiments_and_runs.xar.exploded/Run121310/CFP-10%20standard%20curve_2021-11-09_12-51-58.sky.zip
30 Nov 2021 09:14:15,092 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Tulane%20U%20Biochem%20Hu%20Lab%20-%20patients%20from%20Italy%20cohort%20CFP10%20results/@files/CFP-10%20standard%20curve_2021-11-09_12-51-58.sky.zip
30 Nov 2021 09:14:15,094 INFO : Hiding the Data Pipeline tab.
30 Nov 2021 09:14:15,514 INFO : Emailing submitter.
30 Nov 2021 09:14:15,878 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'