02 Aug 2021 23:21:51,639 INFO : Copying experiment "Linking post-translational modifications and protein turnover by site-resolved protein turnover (SPOT) profiling" from folder /TUM- Kuster Lab/Zecha et al. 2020 to /Panorama Public/2021/TUM Kuster Lab - Zecha et al. 2020

02 Aug 2021 23:21:51,639 INFO : =======================================

02 Aug 2021 23:21:51,709 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'

02 Aug 2021 23:21:51,709 INFO : 

02 Aug 2021 23:21:51,709 INFO : Exporting experiment.

02 Aug 2021 23:31:03,869 INFO : 

02 Aug 2021 23:31:03,869 INFO : Experiment export completed successfully.

02 Aug 2021 23:31:03,869 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'

02 Aug 2021 23:31:03,909 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'

02 Aug 2021 23:31:03,909 INFO : 

02 Aug 2021 23:31:03,909 INFO : Importing experiment.

02 Aug 2021 23:31:03,913 INFO : Loading folder properties (folder type, settings and active modules)

02 Aug 2021 23:31:03,992 INFO : Done importing folder properties (folder type, settings and active modules)

02 Aug 2021 23:31:03,994 INFO : Loading etl definitions

02 Aug 2021 23:31:03,995 INFO : Loading wikis

02 Aug 2021 23:31:04,001 INFO : 1 wiki imported

02 Aug 2021 23:31:04,001 INFO : Done importing wikis

02 Aug 2021 23:31:04,001 INFO : Starting to copy files

02 Aug 2021 23:33:05,264 INFO : 35 files copied, now copying 4013_P43302_E46-48_SILAC_R1.raw

02 Aug 2021 23:33:33,708 INFO : 39 files copied, now copying 04813_BF4_P051828_S00_A00_R2.raw

02 Aug 2021 23:33:40,475 INFO : 47 files copied, now copying 4232_P047673_I00_R1.raw

02 Aug 2021 23:34:07,144 INFO : 55 files copied, now copying 4221_P047681_Q00_R1.raw

02 Aug 2021 23:35:08,550 INFO : 71 files copied, now copying 4035_A03_P44954_A00_I00_R1.raw

02 Aug 2021 23:35:40,789 INFO : 79 files copied, now copying 4013B_F02_P43301_E40-42_SILAC_R1.raw

02 Aug 2021 23:37:41,885 INFO : 91 files copied, now copying 4013B_H02_P43301_E46-48_SILAC_R1.raw

02 Aug 2021 23:38:09,711 INFO : 95 files copied, now copying 4232_P047689_I00_R1.raw

02 Aug 2021 23:38:24,986 INFO : 103 files copied, now copying TKT_ubi.blib

02 Aug 2021 23:38:33,218 INFO : 111 files copied, now copying Prosit.blib

02 Aug 2021 23:38:37,624 INFO : 118 files copied, now copying FBXW7_degron.blib

02 Aug 2021 23:38:56,736 INFO : 125 files copied, now copying FBXW7_degron.blib

02 Aug 2021 23:38:58,492 INFO : 132 files copied, now copying TKT_ubi.blib

02 Aug 2021 23:39:05,081 INFO : 140 files copied, now copying SEC_HeLa_MG132.sky

02 Aug 2021 23:39:06,290 INFO : Copied 147 files

02 Aug 2021 23:39:06,290 INFO : Ensuring exp.data rows exist for imported files

02 Aug 2021 23:39:07,801 INFO : Starting Sample Type and Data Class import

02 Aug 2021 23:39:07,801 INFO : No types XAR file to process.

02 Aug 2021 23:39:07,802 INFO : Finished importing Sample Types and Data Classes

02 Aug 2021 23:39:07,803 INFO : Loading xar

02 Aug 2021 23:39:16,067 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8928:TargetedMS.ImportSkyZip'

02 Aug 2021 23:39:16,069 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8928:TargetedMS.ImportSkyZip.Core'

02 Aug 2021 23:39:16,072 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8928:TargetedMS.ImportSkyZip.Output'

02 Aug 2021 23:39:16,072 DEBUG: Protocol import complete

02 Aug 2021 23:39:16,073 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-8928:Uncovering+functional+protein+modifications+by+site-resolved+protein+turnover+%28SPOT%29+profiling'

02 Aug 2021 23:39:16,073 DEBUG: Experiment/Run group import complete

02 Aug 2021 23:39:16,082 DEBUG: Protocol action set import complete

02 Aug 2021 23:39:16,096 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8928:TargetedMS.ImportSkyZip'

02 Aug 2021 23:39:16,105 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8928:1afcfd05-22f0-1039-927b-3013bb9ba7ed'

02 Aug 2021 23:39:16,111 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8928:d5ba8725-22ed-1039-927b-3013bb9ba7ed'

02 Aug 2021 23:39:16,111 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8928:TargetedMS.ImportSkyZip.Core'

02 Aug 2021 23:39:16,114 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8928:TargetedMS.ImportSkyZip.Output'

02 Aug 2021 23:39:16,114 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8928:1afcfd30-22f0-1039-927b-3013bb9ba7ed'

02 Aug 2021 23:39:16,120 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8928:TargetedMS.ImportSkyZip'

02 Aug 2021 23:39:16,126 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8928:1afd1875-22f0-1039-927b-3013bb9ba7ed'

02 Aug 2021 23:39:16,130 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8928:1afd180e-22f0-1039-927b-3013bb9ba7ed'

02 Aug 2021 23:39:16,130 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8928:TargetedMS.ImportSkyZip.Core'

02 Aug 2021 23:39:16,132 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8928:TargetedMS.ImportSkyZip.Output'

02 Aug 2021 23:39:16,132 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8928:1afd191f-22f0-1039-927b-3013bb9ba7ed'

02 Aug 2021 23:39:16,139 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8928:TargetedMS.ImportSkyZip'

02 Aug 2021 23:39:16,145 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8928:5c57dc9e-234c-1039-927b-3013bb9ba7ed'

02 Aug 2021 23:39:16,150 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8928:5c57dc4d-234c-1039-927b-3013bb9ba7ed'

02 Aug 2021 23:39:16,150 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8928:TargetedMS.ImportSkyZip.Core'

02 Aug 2021 23:39:16,152 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8928:TargetedMS.ImportSkyZip.Output'

02 Aug 2021 23:39:16,153 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8928:5c57dcff-234c-1039-927b-3013bb9ba7ed'

02 Aug 2021 23:39:16,160 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8928:TargetedMS.ImportSkyZip'

02 Aug 2021 23:39:16,166 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8928:5c57e0dd-234c-1039-927b-3013bb9ba7ed'

02 Aug 2021 23:39:16,171 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8928:5c57e08d-234c-1039-927b-3013bb9ba7ed'

02 Aug 2021 23:39:16,171 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8928:TargetedMS.ImportSkyZip.Core'

02 Aug 2021 23:39:16,174 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8928:TargetedMS.ImportSkyZip.Output'

02 Aug 2021 23:39:16,174 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8928:5c57e175-234c-1039-927b-3013bb9ba7ed'

02 Aug 2021 23:39:16,182 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8928:TargetedMS.ImportSkyZip'

02 Aug 2021 23:39:16,187 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8928:5c57e299-234c-1039-927b-3013bb9ba7ed'

02 Aug 2021 23:39:16,192 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8928:5c57e1f4-234c-1039-927b-3013bb9ba7ed'

02 Aug 2021 23:39:16,192 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8928:TargetedMS.ImportSkyZip.Core'

02 Aug 2021 23:39:16,195 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8928:TargetedMS.ImportSkyZip.Output'

02 Aug 2021 23:39:16,195 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8928:5c57e2e4-234c-1039-927b-3013bb9ba7ed'

02 Aug 2021 23:39:16,202 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8928:TargetedMS.ImportSkyZip'

02 Aug 2021 23:39:16,206 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8928:e3784618-d3b0-1039-937c-fea6ddf55d1e'

02 Aug 2021 23:39:16,210 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8928:e37845e9-d3b0-1039-937c-fea6ddf55d1e'

02 Aug 2021 23:39:16,210 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8928:TargetedMS.ImportSkyZip.Core'

02 Aug 2021 23:39:16,211 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8928:TargetedMS.ImportSkyZip.Output'

02 Aug 2021 23:39:16,212 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8928:e378465b-d3b0-1039-937c-fea6ddf55d1e'

02 Aug 2021 23:39:16,217 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8928:TargetedMS.ImportSkyZip'

02 Aug 2021 23:39:16,221 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8928:f9a9bf67-d4aa-1039-937c-fea6ddf55d1e'

02 Aug 2021 23:39:16,225 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8928:f9a9bf3d-d4aa-1039-937c-fea6ddf55d1e'

02 Aug 2021 23:39:16,225 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8928:TargetedMS.ImportSkyZip.Core'

02 Aug 2021 23:39:16,227 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8928:TargetedMS.ImportSkyZip.Output'

02 Aug 2021 23:39:16,227 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8928:f9a9bf84-d4aa-1039-937c-fea6ddf55d1e'

02 Aug 2021 23:39:16,230 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TUM%20Kuster%20Lab%20-%20Zecha%20et%20al.%202020_cdc262ce-d64f-1039-937c-fea6ddf55d1e/_temp__2021-08-02_23-21-51/export/xar/experiments_and_runs.xar.exploded/Run96502/SEC_HeLa_MG132_2020-12-18_00-32-52/SEC_HeLa_MG132.skyd into the system

02 Aug 2021 23:39:16,231 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TUM%20Kuster%20Lab%20-%20Zecha%20et%20al.%202020_cdc262ce-d64f-1039-937c-fea6ddf55d1e/_temp__2021-08-02_23-21-51/export/xar/experiments_and_runs.xar.exploded/Run96502/SEC_HeLa_MG132_2020-12-18_00-32-52/SEC_HeLa_MG132.skyd into the system

02 Aug 2021 23:39:16,231 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TUM%20Kuster%20Lab%20-%20Zecha%20et%20al.%202020_cdc262ce-d64f-1039-937c-fea6ddf55d1e/_temp__2021-08-02_23-21-51/export/xar/experiments_and_runs.xar.exploded/Run96502/SEC_HeLa_MG132_2020-12-18_00-32-52.sky.zip into the system

02 Aug 2021 23:39:16,232 INFO : Starting import from SEC_HeLa_MG132_2020-12-18_00-32-52.sky.zip

02 Aug 2021 23:39:16,237 INFO : Starting to import Skyline document from SEC_HeLa_MG132_2020-12-18_00-32-52.sky.zip

02 Aug 2021 23:39:16,238 INFO : Expanding 180207_SwissProt_canonical_isoforms.protdb

02 Aug 2021 23:39:18,924 INFO : Expanding Prosit.blib

02 Aug 2021 23:39:18,924 INFO : Expanding pSILAC.blib

02 Aug 2021 23:39:18,931 INFO : Expanding SEC_HeLa_MG132.skyd

02 Aug 2021 23:39:18,954 INFO : Expanding SEC_HeLa_MG132.sky.view

02 Aug 2021 23:39:18,955 INFO : Expanding SEC_HeLa_MG132.sky

02 Aug 2021 23:39:18,957 INFO : Expanding SEC_HeLa_MG132.skyl

02 Aug 2021 23:39:19,005 INFO : 3% Done

02 Aug 2021 23:39:19,029 DEBUG: Starting to load chromatogram headers

02 Aug 2021 23:39:19,031 DEBUG: Done loading chromatogram headers

02 Aug 2021 23:39:19,121 INFO : Inserting RT peptides

02 Aug 2021 23:39:19,135 INFO : 10% Done

02 Aug 2021 23:39:19,173 INFO : 18% Done

02 Aug 2021 23:39:19,200 INFO : 24% Done

02 Aug 2021 23:39:19,230 INFO : 30% Done

02 Aug 2021 23:39:19,260 INFO : 37% Done

02 Aug 2021 23:39:19,280 DEBUG: Total peptides inserted: 5

02 Aug 2021 23:39:19,286 INFO : Inserting sp|Q99460|PSMD1_HUMAN

02 Aug 2021 23:39:19,301 INFO : 53% Done

02 Aug 2021 23:39:19,402 INFO : 67% Done

02 Aug 2021 23:39:19,470 DEBUG: Total peptides inserted: 2

02 Aug 2021 23:39:19,474 INFO : Inserting sp|P28066|PSA5_HUMAN

02 Aug 2021 23:39:19,487 INFO : 81% Done

02 Aug 2021 23:39:19,559 INFO : 98% Done

02 Aug 2021 23:39:19,620 DEBUG: Total peptides inserted: 2

02 Aug 2021 23:39:19,621 INFO : Done parsing Skyline document.

02 Aug 2021 23:39:20,259 INFO : Creating and populating temp tables for Proportion values

02 Aug 2021 23:39:20,272 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

02 Aug 2021 23:39:20,286 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

02 Aug 2021 23:39:20,293 INFO : Cleaning up temp tables

02 Aug 2021 23:39:20,478 INFO : Completed import of Skyline document from SEC_HeLa_MG132_2020-12-18_00-32-52.sky.zip

02 Aug 2021 23:39:20,481 INFO : 100% Done

02 Aug 2021 23:39:20,486 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TUM%20Kuster%20Lab%20-%20Zecha%20et%20al.%202020_cdc262ce-d64f-1039-937c-fea6ddf55d1e/_temp__2021-08-02_23-21-51/export/xar/experiments_and_runs.xar.exploded/Run96502/SEC_HeLa_MG132_2020-12-18_00-32-52.sky.zip into the system

02 Aug 2021 23:39:20,486 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TUM%20Kuster%20Lab%20-%20Zecha%20et%20al.%202020_cdc262ce-d64f-1039-937c-fea6ddf55d1e/_temp__2021-08-02_23-21-51/export/xar/experiments_and_runs.xar.exploded/Run96503/SEC_RPMI8226_BTZ_2020-12-18_00-57-57/SEC_RPMI8226_BTZ.skyd into the system

02 Aug 2021 23:39:20,487 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TUM%20Kuster%20Lab%20-%20Zecha%20et%20al.%202020_cdc262ce-d64f-1039-937c-fea6ddf55d1e/_temp__2021-08-02_23-21-51/export/xar/experiments_and_runs.xar.exploded/Run96503/SEC_RPMI8226_BTZ_2020-12-18_00-57-57/SEC_RPMI8226_BTZ.skyd into the system

02 Aug 2021 23:39:20,487 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TUM%20Kuster%20Lab%20-%20Zecha%20et%20al.%202020_cdc262ce-d64f-1039-937c-fea6ddf55d1e/_temp__2021-08-02_23-21-51/export/xar/experiments_and_runs.xar.exploded/Run96503/SEC_RPMI8226_BTZ_2020-12-18_00-57-57.sky.zip into the system

02 Aug 2021 23:39:20,488 INFO : Starting import from SEC_RPMI8226_BTZ_2020-12-18_00-57-57.sky.zip

02 Aug 2021 23:39:20,490 INFO : Starting to import Skyline document from SEC_RPMI8226_BTZ_2020-12-18_00-57-57.sky.zip

02 Aug 2021 23:39:20,493 INFO : Expanding 180207_SwissProt_canonical_isoforms.protdb

02 Aug 2021 23:39:23,162 INFO : Expanding pSILAC.blib

02 Aug 2021 23:39:23,169 INFO : Expanding Prosit.blib

02 Aug 2021 23:39:23,170 INFO : Expanding SEC_RPMI8226_BTZ.skyd

02 Aug 2021 23:39:23,211 INFO : Expanding SEC_RPMI8226_BTZ.sky.view

02 Aug 2021 23:39:23,211 INFO : Expanding SEC_RPMI8226_BTZ.sky

02 Aug 2021 23:39:23,213 INFO : Expanding SEC_RPMI8226_BTZ.skyl

02 Aug 2021 23:39:23,223 INFO : 2% Done

02 Aug 2021 23:39:23,267 DEBUG: Starting to load chromatogram headers

02 Aug 2021 23:39:23,268 DEBUG: Done loading chromatogram headers

02 Aug 2021 23:39:23,332 INFO : Inserting RT peptides

02 Aug 2021 23:39:23,338 INFO : 10% Done

02 Aug 2021 23:39:23,361 INFO : 16% Done

02 Aug 2021 23:39:23,382 INFO : 22% Done

02 Aug 2021 23:39:23,401 INFO : 28% Done

02 Aug 2021 23:39:23,422 INFO : 35% Done

02 Aug 2021 23:39:23,439 DEBUG: Total peptides inserted: 5

02 Aug 2021 23:39:23,441 INFO : 36% Done

02 Aug 2021 23:39:23,443 INFO : Inserting sp|Q99460|PSMD1_HUMAN

02 Aug 2021 23:39:23,448 INFO : 46% Done

02 Aug 2021 23:39:23,495 INFO : 57% Done

02 Aug 2021 23:39:23,543 INFO : 69% Done

02 Aug 2021 23:39:23,592 INFO : 77% Done

02 Aug 2021 23:39:23,633 DEBUG: Total peptides inserted: 4

02 Aug 2021 23:39:23,634 INFO : 78% Done

02 Aug 2021 23:39:23,636 INFO : Inserting sp|P28066|PSA5_HUMAN

02 Aug 2021 23:39:23,642 INFO : 89% Done

02 Aug 2021 23:39:23,691 INFO : 98% Done

02 Aug 2021 23:39:23,726 DEBUG: Total peptides inserted: 2

02 Aug 2021 23:39:23,727 INFO : Done parsing Skyline document.

02 Aug 2021 23:39:24,076 INFO : Creating and populating temp tables for Proportion values

02 Aug 2021 23:39:24,087 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

02 Aug 2021 23:39:24,098 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

02 Aug 2021 23:39:24,102 INFO : Cleaning up temp tables

02 Aug 2021 23:39:24,279 INFO : Completed import of Skyline document from SEC_RPMI8226_BTZ_2020-12-18_00-57-57.sky.zip

02 Aug 2021 23:39:24,281 INFO : 100% Done

02 Aug 2021 23:39:24,285 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TUM%20Kuster%20Lab%20-%20Zecha%20et%20al.%202020_cdc262ce-d64f-1039-937c-fea6ddf55d1e/_temp__2021-08-02_23-21-51/export/xar/experiments_and_runs.xar.exploded/Run96503/SEC_RPMI8226_BTZ_2020-12-18_00-57-57.sky.zip into the system

02 Aug 2021 23:39:24,285 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TUM%20Kuster%20Lab%20-%20Zecha%20et%20al.%202020_cdc262ce-d64f-1039-937c-fea6ddf55d1e/_temp__2021-08-02_23-21-51/export/xar/experiments_and_runs.xar.exploded/Run96519/FBXW7_KD_phosphoTKT&UNG_R1_2020-12-18_11-59-13/FBXW7_KD_phosphoTKT&UNG_R1.skyd into the system

02 Aug 2021 23:39:24,285 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TUM%20Kuster%20Lab%20-%20Zecha%20et%20al.%202020_cdc262ce-d64f-1039-937c-fea6ddf55d1e/_temp__2021-08-02_23-21-51/export/xar/experiments_and_runs.xar.exploded/Run96519/FBXW7_KD_phosphoTKT&UNG_R1_2020-12-18_11-59-13/FBXW7_KD_phosphoTKT&UNG_R1.skyd into the system

02 Aug 2021 23:39:24,285 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TUM%20Kuster%20Lab%20-%20Zecha%20et%20al.%202020_cdc262ce-d64f-1039-937c-fea6ddf55d1e/_temp__2021-08-02_23-21-51/export/xar/experiments_and_runs.xar.exploded/Run96519/FBXW7_KD_phosphoTKT&UNG_R1_2020-12-18_11-59-13.sky.zip into the system

02 Aug 2021 23:39:24,286 INFO : Starting import from FBXW7_KD_phosphoTKT&UNG_R1_2020-12-18_11-59-13.sky.zip

02 Aug 2021 23:39:24,289 INFO : Starting to import Skyline document from FBXW7_KD_phosphoTKT&UNG_R1_2020-12-18_11-59-13.sky.zip

02 Aug 2021 23:39:24,290 INFO : Expanding 180207_SwissProt_canonical_isoforms.protdb

02 Aug 2021 23:39:26,864 INFO : Expanding Prosit.blib

02 Aug 2021 23:39:26,865 INFO : Expanding FBXW7_degron.blib

02 Aug 2021 23:39:26,865 INFO : Expanding FBXW7_KD_phosphoTKT&UNG_R1.skyd

02 Aug 2021 23:39:26,882 INFO : Expanding FBXW7_KD_phosphoTKT&UNG_R1.sky.view

02 Aug 2021 23:39:26,882 INFO : Expanding FBXW7_KD_phosphoTKT&UNG_R1.sky

02 Aug 2021 23:39:26,883 INFO : Expanding FBXW7_KD_phosphoTKT&UNG_R1.skyl

02 Aug 2021 23:39:26,904 INFO : 10% Done

02 Aug 2021 23:39:26,912 DEBUG: Starting to load chromatogram headers

02 Aug 2021 23:39:26,913 DEBUG: Done loading chromatogram headers

02 Aug 2021 23:39:26,965 INFO : Inserting RT peptides

02 Aug 2021 23:39:26,970 INFO : 24% Done

02 Aug 2021 23:39:26,987 INFO : 39% Done

02 Aug 2021 23:39:26,999 INFO : 51% Done

02 Aug 2021 23:39:27,010 INFO : 66% Done

02 Aug 2021 23:39:27,019 DEBUG: Total peptides inserted: 4

02 Aug 2021 23:39:27,023 INFO : Inserting sp|P29401|TKT_HUMAN

02 Aug 2021 23:39:27,027 INFO : 80% Done

02 Aug 2021 23:39:27,038 DEBUG: Total peptides inserted: 1

02 Aug 2021 23:39:27,041 INFO : Inserting sp|P13051|UNG_HUMAN

02 Aug 2021 23:39:27,045 INFO : 98% Done

02 Aug 2021 23:39:27,057 DEBUG: Total peptides inserted: 1

02 Aug 2021 23:39:27,058 INFO : Done parsing Skyline document.

02 Aug 2021 23:39:29,709 INFO : Creating and populating temp tables for Proportion values

02 Aug 2021 23:39:29,728 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

02 Aug 2021 23:39:29,731 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

02 Aug 2021 23:39:29,734 INFO : Cleaning up temp tables

02 Aug 2021 23:39:29,928 INFO : Completed import of Skyline document from FBXW7_KD_phosphoTKT&UNG_R1_2020-12-18_11-59-13.sky.zip

02 Aug 2021 23:39:29,931 INFO : 100% Done

02 Aug 2021 23:39:29,937 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TUM%20Kuster%20Lab%20-%20Zecha%20et%20al.%202020_cdc262ce-d64f-1039-937c-fea6ddf55d1e/_temp__2021-08-02_23-21-51/export/xar/experiments_and_runs.xar.exploded/Run96519/FBXW7_KD_phosphoTKT&UNG_R1_2020-12-18_11-59-13.sky.zip into the system

02 Aug 2021 23:39:29,937 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TUM%20Kuster%20Lab%20-%20Zecha%20et%20al.%202020_cdc262ce-d64f-1039-937c-fea6ddf55d1e/_temp__2021-08-02_23-21-51/export/xar/experiments_and_runs.xar.exploded/Run96520/FBXW7_OE_phosphoTKT&UNG_R1_2020-12-18_12-00-22/FBXW7_OE_phosphoTKT&UNG_R1.skyd into the system

02 Aug 2021 23:39:29,938 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TUM%20Kuster%20Lab%20-%20Zecha%20et%20al.%202020_cdc262ce-d64f-1039-937c-fea6ddf55d1e/_temp__2021-08-02_23-21-51/export/xar/experiments_and_runs.xar.exploded/Run96520/FBXW7_OE_phosphoTKT&UNG_R1_2020-12-18_12-00-22/FBXW7_OE_phosphoTKT&UNG_R1.skyd into the system

02 Aug 2021 23:39:29,938 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TUM%20Kuster%20Lab%20-%20Zecha%20et%20al.%202020_cdc262ce-d64f-1039-937c-fea6ddf55d1e/_temp__2021-08-02_23-21-51/export/xar/experiments_and_runs.xar.exploded/Run96520/FBXW7_OE_phosphoTKT&UNG_R1_2020-12-18_12-00-22.sky.zip into the system

02 Aug 2021 23:39:29,939 INFO : Starting import from FBXW7_OE_phosphoTKT&UNG_R1_2020-12-18_12-00-22.sky.zip

02 Aug 2021 23:39:29,942 INFO : Starting to import Skyline document from FBXW7_OE_phosphoTKT&UNG_R1_2020-12-18_12-00-22.sky.zip

02 Aug 2021 23:39:29,944 INFO : Expanding 180207_SwissProt_canonical_isoforms.protdb

02 Aug 2021 23:39:32,523 INFO : Expanding Prosit.blib

02 Aug 2021 23:39:32,524 INFO : Expanding FBXW7_degron.blib

02 Aug 2021 23:39:32,524 INFO : Expanding FBXW7_OE_phosphoTKT&UNG_R1.skyd

02 Aug 2021 23:39:32,547 INFO : Expanding FBXW7_OE_phosphoTKT&UNG_R1.sky.view

02 Aug 2021 23:39:32,547 INFO : Expanding FBXW7_OE_phosphoTKT&UNG_R1.sky

02 Aug 2021 23:39:32,548 INFO : Expanding FBXW7_OE_phosphoTKT&UNG_R1.skyl

02 Aug 2021 23:39:32,566 INFO : 7% Done

02 Aug 2021 23:39:32,577 DEBUG: Starting to load chromatogram headers

02 Aug 2021 23:39:32,578 DEBUG: Done loading chromatogram headers

02 Aug 2021 23:39:32,617 INFO : Inserting RT peptides

02 Aug 2021 23:39:32,621 INFO : 24% Done

02 Aug 2021 23:39:32,634 INFO : 36% Done

02 Aug 2021 23:39:32,644 INFO : 51% Done

02 Aug 2021 23:39:32,655 INFO : 63% Done

02 Aug 2021 23:39:32,663 DEBUG: Total peptides inserted: 4

02 Aug 2021 23:39:32,664 INFO : 66% Done

02 Aug 2021 23:39:32,667 INFO : Inserting sp|P29401|TKT_HUMAN

02 Aug 2021 23:39:32,670 INFO : 80% Done

02 Aug 2021 23:39:32,682 DEBUG: Total peptides inserted: 1

02 Aug 2021 23:39:32,684 INFO : Inserting sp|P13051|UNG_HUMAN

02 Aug 2021 23:39:32,688 INFO : 98% Done

02 Aug 2021 23:39:32,699 DEBUG: Total peptides inserted: 1

02 Aug 2021 23:39:32,700 INFO : Done parsing Skyline document.

02 Aug 2021 23:39:34,395 INFO : Creating and populating temp tables for Proportion values

02 Aug 2021 23:39:34,403 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

02 Aug 2021 23:39:34,405 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

02 Aug 2021 23:39:34,407 INFO : Cleaning up temp tables

02 Aug 2021 23:39:34,620 INFO : Completed import of Skyline document from FBXW7_OE_phosphoTKT&UNG_R1_2020-12-18_12-00-22.sky.zip

02 Aug 2021 23:39:34,623 INFO : 100% Done

02 Aug 2021 23:39:34,626 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TUM%20Kuster%20Lab%20-%20Zecha%20et%20al.%202020_cdc262ce-d64f-1039-937c-fea6ddf55d1e/_temp__2021-08-02_23-21-51/export/xar/experiments_and_runs.xar.exploded/Run96520/FBXW7_OE_phosphoTKT&UNG_R1_2020-12-18_12-00-22.sky.zip into the system

02 Aug 2021 23:39:34,626 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TUM%20Kuster%20Lab%20-%20Zecha%20et%20al.%202020_cdc262ce-d64f-1039-937c-fea6ddf55d1e/_temp__2021-08-02_23-21-51/export/xar/experiments_and_runs.xar.exploded/Run96521/FBXW7_OE_phosphoTKT&UNG_R2_2020-12-18_12-01-26/FBXW7_OE_phosphoTKT&UNG_R2.skyd into the system

02 Aug 2021 23:39:34,627 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TUM%20Kuster%20Lab%20-%20Zecha%20et%20al.%202020_cdc262ce-d64f-1039-937c-fea6ddf55d1e/_temp__2021-08-02_23-21-51/export/xar/experiments_and_runs.xar.exploded/Run96521/FBXW7_OE_phosphoTKT&UNG_R2_2020-12-18_12-01-26/FBXW7_OE_phosphoTKT&UNG_R2.skyd into the system

02 Aug 2021 23:39:34,627 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TUM%20Kuster%20Lab%20-%20Zecha%20et%20al.%202020_cdc262ce-d64f-1039-937c-fea6ddf55d1e/_temp__2021-08-02_23-21-51/export/xar/experiments_and_runs.xar.exploded/Run96521/FBXW7_OE_phosphoTKT&UNG_R2_2020-12-18_12-01-26.sky.zip into the system

02 Aug 2021 23:39:34,627 INFO : Starting import from FBXW7_OE_phosphoTKT&UNG_R2_2020-12-18_12-01-26.sky.zip

02 Aug 2021 23:39:34,629 INFO : Starting to import Skyline document from FBXW7_OE_phosphoTKT&UNG_R2_2020-12-18_12-01-26.sky.zip

02 Aug 2021 23:39:34,630 INFO : Expanding 180207_SwissProt_canonical_isoforms.protdb

02 Aug 2021 23:39:37,246 INFO : Expanding Prosit.blib

02 Aug 2021 23:39:37,246 INFO : Expanding FBXW7_degron.blib

02 Aug 2021 23:39:37,247 INFO : Expanding FBXW7_OE_phosphoTKT&UNG_R2.skyd

02 Aug 2021 23:39:37,263 INFO : Expanding FBXW7_OE_phosphoTKT&UNG_R2.sky.view

02 Aug 2021 23:39:37,263 INFO : Expanding FBXW7_OE_phosphoTKT&UNG_R2.sky

02 Aug 2021 23:39:37,264 INFO : Expanding FBXW7_OE_phosphoTKT&UNG_R2.skyl

02 Aug 2021 23:39:37,281 INFO : 10% Done

02 Aug 2021 23:39:37,288 DEBUG: Starting to load chromatogram headers

02 Aug 2021 23:39:37,288 DEBUG: Done loading chromatogram headers

02 Aug 2021 23:39:37,328 INFO : Inserting RT peptides

02 Aug 2021 23:39:37,332 INFO : 24% Done

02 Aug 2021 23:39:37,345 INFO : 39% Done

02 Aug 2021 23:39:37,355 INFO : 51% Done

02 Aug 2021 23:39:37,365 INFO : 63% Done

02 Aug 2021 23:39:37,373 DEBUG: Total peptides inserted: 4

02 Aug 2021 23:39:37,374 INFO : 66% Done

02 Aug 2021 23:39:37,377 INFO : Inserting sp|P29401|TKT_HUMAN

02 Aug 2021 23:39:37,379 INFO : 80% Done

02 Aug 2021 23:39:37,389 DEBUG: Total peptides inserted: 1

02 Aug 2021 23:39:37,391 INFO : Inserting sp|P13051|UNG_HUMAN

02 Aug 2021 23:39:37,394 INFO : 98% Done

02 Aug 2021 23:39:37,404 DEBUG: Total peptides inserted: 1

02 Aug 2021 23:39:37,405 INFO : Done parsing Skyline document.

02 Aug 2021 23:39:39,714 INFO : Creating and populating temp tables for Proportion values

02 Aug 2021 23:39:39,723 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

02 Aug 2021 23:39:39,725 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

02 Aug 2021 23:39:39,727 INFO : Cleaning up temp tables

02 Aug 2021 23:39:39,950 INFO : Completed import of Skyline document from FBXW7_OE_phosphoTKT&UNG_R2_2020-12-18_12-01-26.sky.zip

02 Aug 2021 23:39:39,953 INFO : 100% Done

02 Aug 2021 23:39:39,956 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TUM%20Kuster%20Lab%20-%20Zecha%20et%20al.%202020_cdc262ce-d64f-1039-937c-fea6ddf55d1e/_temp__2021-08-02_23-21-51/export/xar/experiments_and_runs.xar.exploded/Run96521/FBXW7_OE_phosphoTKT&UNG_R2_2020-12-18_12-01-26.sky.zip into the system

02 Aug 2021 23:39:39,957 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TUM%20Kuster%20Lab%20-%20Zecha%20et%20al.%202020_cdc262ce-d64f-1039-937c-fea6ddf55d1e/_temp__2021-08-02_23-21-51/export/xar/experiments_and_runs.xar.exploded/Run114766/FBXW7_KD_phosphoTKT&UNG_R2_2021-07-30_23-59-07/FBXW7_KD_phosphoTKT&UNG_R2.skyd into the system

02 Aug 2021 23:39:39,957 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TUM%20Kuster%20Lab%20-%20Zecha%20et%20al.%202020_cdc262ce-d64f-1039-937c-fea6ddf55d1e/_temp__2021-08-02_23-21-51/export/xar/experiments_and_runs.xar.exploded/Run114766/FBXW7_KD_phosphoTKT&UNG_R2_2021-07-30_23-59-07/FBXW7_KD_phosphoTKT&UNG_R2.skyd into the system

02 Aug 2021 23:39:39,957 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TUM%20Kuster%20Lab%20-%20Zecha%20et%20al.%202020_cdc262ce-d64f-1039-937c-fea6ddf55d1e/_temp__2021-08-02_23-21-51/export/xar/experiments_and_runs.xar.exploded/Run114766/FBXW7_KD_phosphoTKT&UNG_R2_2021-07-30_23-59-07.sky.zip into the system

02 Aug 2021 23:39:39,958 INFO : Starting import from FBXW7_KD_phosphoTKT&UNG_R2_2021-07-30_23-59-07.sky.zip

02 Aug 2021 23:39:39,960 INFO : Starting to import Skyline document from FBXW7_KD_phosphoTKT&UNG_R2_2021-07-30_23-59-07.sky.zip

02 Aug 2021 23:39:39,961 INFO : Expanding 180207_SwissProt_canonical_isoforms.protdb

02 Aug 2021 23:39:42,620 INFO : Expanding Prosit.blib

02 Aug 2021 23:39:42,620 INFO : Expanding FBXW7_degron.blib

02 Aug 2021 23:39:42,621 INFO : Expanding FBXW7_KD_phosphoTKT&UNG_R2.skyd

02 Aug 2021 23:39:42,629 INFO : Expanding FBXW7_KD_phosphoTKT&UNG_R2.sky.view

02 Aug 2021 23:39:42,629 INFO : Expanding FBXW7_KD_phosphoTKT&UNG_R2.sky

02 Aug 2021 23:39:42,630 INFO : Expanding FBXW7_KD_phosphoTKT&UNG_R2.skyl

02 Aug 2021 23:39:42,665 INFO : 10% Done

02 Aug 2021 23:39:42,668 DEBUG: Starting to load chromatogram headers

02 Aug 2021 23:39:42,668 DEBUG: Done loading chromatogram headers

02 Aug 2021 23:39:42,716 INFO : Inserting RT peptides

02 Aug 2021 23:39:42,720 INFO : 24% Done

02 Aug 2021 23:39:42,737 INFO : 38% Done

02 Aug 2021 23:39:42,748 INFO : 51% Done

02 Aug 2021 23:39:42,758 INFO : 66% Done

02 Aug 2021 23:39:42,767 DEBUG: Total peptides inserted: 4

02 Aug 2021 23:39:42,770 INFO : Inserting sp|P29401|TKT_HUMAN

02 Aug 2021 23:39:42,773 INFO : 80% Done

02 Aug 2021 23:39:42,785 DEBUG: Total peptides inserted: 1

02 Aug 2021 23:39:42,787 INFO : Inserting sp|P13051|UNG_HUMAN

02 Aug 2021 23:39:42,790 INFO : 98% Done

02 Aug 2021 23:39:42,804 DEBUG: Total peptides inserted: 1

02 Aug 2021 23:39:42,805 INFO : Done parsing Skyline document.

02 Aug 2021 23:39:45,777 INFO : Creating and populating temp tables for Proportion values

02 Aug 2021 23:39:45,786 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

02 Aug 2021 23:39:45,789 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

02 Aug 2021 23:39:45,790 INFO : Cleaning up temp tables

02 Aug 2021 23:39:46,006 INFO : Completed import of Skyline document from FBXW7_KD_phosphoTKT&UNG_R2_2021-07-30_23-59-07.sky.zip

02 Aug 2021 23:39:46,008 INFO : 100% Done

02 Aug 2021 23:39:46,012 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TUM%20Kuster%20Lab%20-%20Zecha%20et%20al.%202020_cdc262ce-d64f-1039-937c-fea6ddf55d1e/_temp__2021-08-02_23-21-51/export/xar/experiments_and_runs.xar.exploded/Run114766/FBXW7_KD_phosphoTKT&UNG_R2_2021-07-30_23-59-07.sky.zip into the system

02 Aug 2021 23:39:46,012 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TUM%20Kuster%20Lab%20-%20Zecha%20et%20al.%202020_cdc262ce-d64f-1039-937c-fea6ddf55d1e/_temp__2021-08-02_23-21-51/export/xar/experiments_and_runs.xar.exploded/Run114796/FBWX7_TKT_ubi_2021-08-01_05-53-31/FBWX7_TKT_ubi.skyd into the system

02 Aug 2021 23:39:46,013 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TUM%20Kuster%20Lab%20-%20Zecha%20et%20al.%202020_cdc262ce-d64f-1039-937c-fea6ddf55d1e/_temp__2021-08-02_23-21-51/export/xar/experiments_and_runs.xar.exploded/Run114796/FBWX7_TKT_ubi_2021-08-01_05-53-31/FBWX7_TKT_ubi.skyd into the system

02 Aug 2021 23:39:46,013 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TUM%20Kuster%20Lab%20-%20Zecha%20et%20al.%202020_cdc262ce-d64f-1039-937c-fea6ddf55d1e/_temp__2021-08-02_23-21-51/export/xar/experiments_and_runs.xar.exploded/Run114796/FBWX7_TKT_ubi_2021-08-01_05-53-31.sky.zip into the system

02 Aug 2021 23:39:46,014 INFO : Starting import from FBWX7_TKT_ubi_2021-08-01_05-53-31.sky.zip

02 Aug 2021 23:39:46,016 INFO : Starting to import Skyline document from FBWX7_TKT_ubi_2021-08-01_05-53-31.sky.zip

02 Aug 2021 23:39:46,017 INFO : Expanding 180207_SwissProt_canonical_isoforms.protdb

02 Aug 2021 23:39:48,603 INFO : Expanding Prosit.blib

02 Aug 2021 23:39:48,603 INFO : Expanding TKT_ubi.blib

02 Aug 2021 23:39:48,604 INFO : Expanding TKT_ubi.redundant.blib

02 Aug 2021 23:39:48,608 INFO : Expanding FBWX7_TKT_ubi.skyd

02 Aug 2021 23:39:48,639 INFO : Expanding FBWX7_TKT_ubi.sky.view

02 Aug 2021 23:39:48,639 INFO : Expanding FBWX7_TKT_ubi.sky

02 Aug 2021 23:39:48,640 INFO : Expanding FBWX7_TKT_ubi.skyl

02 Aug 2021 23:39:48,653 INFO : 4% Done

02 Aug 2021 23:39:48,671 DEBUG: Starting to load chromatogram headers

02 Aug 2021 23:39:48,671 DEBUG: Done loading chromatogram headers

02 Aug 2021 23:39:48,710 INFO : Inserting RT peptides

02 Aug 2021 23:39:48,714 INFO : 13% Done

02 Aug 2021 23:39:48,733 INFO : 20% Done

02 Aug 2021 23:39:48,750 INFO : 27% Done

02 Aug 2021 23:39:48,766 INFO : 35% Done

02 Aug 2021 23:39:48,782 INFO : 42% Done

02 Aug 2021 23:39:48,795 DEBUG: Total peptides inserted: 5

02 Aug 2021 23:39:48,796 INFO : 43% Done

02 Aug 2021 23:39:48,798 INFO : Inserting sp|P29401|TKT_HUMAN

02 Aug 2021 23:39:48,802 INFO : 51% Done

02 Aug 2021 23:39:48,820 INFO : 60% Done

02 Aug 2021 23:39:48,839 INFO : 68% Done

02 Aug 2021 23:39:48,856 INFO : 76% Done

02 Aug 2021 23:39:48,874 INFO : 83% Done

02 Aug 2021 23:39:48,893 INFO : 92% Done

02 Aug 2021 23:39:48,910 INFO : 98% Done

02 Aug 2021 23:39:48,924 DEBUG: Total peptides inserted: 7

02 Aug 2021 23:39:48,925 INFO : Done parsing Skyline document.

02 Aug 2021 23:39:49,901 INFO : Creating and populating temp tables for Proportion values

02 Aug 2021 23:39:49,911 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

02 Aug 2021 23:39:49,919 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

02 Aug 2021 23:39:49,924 INFO : Cleaning up temp tables

02 Aug 2021 23:39:50,146 INFO : Completed import of Skyline document from FBWX7_TKT_ubi_2021-08-01_05-53-31.sky.zip

02 Aug 2021 23:39:50,149 INFO : 100% Done

02 Aug 2021 23:39:50,152 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TUM%20Kuster%20Lab%20-%20Zecha%20et%20al.%202020_cdc262ce-d64f-1039-937c-fea6ddf55d1e/_temp__2021-08-02_23-21-51/export/xar/experiments_and_runs.xar.exploded/Run114796/FBWX7_TKT_ubi_2021-08-01_05-53-31.sky.zip into the system

02 Aug 2021 23:39:50,174 INFO : Done importing xar

02 Aug 2021 23:39:50,175 INFO : Loading pages and webpart properties

02 Aug 2021 23:39:50,239 INFO : Done importing pages and webpart properties

02 Aug 2021 23:39:50,239 INFO : 

02 Aug 2021 23:39:50,239 INFO : Experiment import completed successfully.

02 Aug 2021 23:39:50,239 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'

02 Aug 2021 23:39:50,277 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'

02 Aug 2021 23:39:50,277 INFO : 

02 Aug 2021 23:39:50,277 INFO : Finishing up experiment copy.

02 Aug 2021 23:39:50,278 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.

02 Aug 2021 23:39:50,281 INFO : Copying ProteomeXchange ID from the previous copy of the data.

02 Aug 2021 23:39:50,281 INFO : Assigning a DOI.

02 Aug 2021 23:39:52,129 INFO : Assigned DOI: 10.6069/jmvf-zy76

02 Aug 2021 23:39:52,133 INFO : Updating access URL to point to the new copy of the data.

02 Aug 2021 23:39:52,139 INFO : Setting the 'copied' timestamp and journalExperimentId on the JournalExperiment table.

02 Aug 2021 23:39:52,141 INFO : Removing copy permissions given to journal.

02 Aug 2021 23:39:52,151 INFO : Adding read permissions to all users that are folder admins in the source container.

02 Aug 2021 23:39:52,152 INFO : Adding read permissions to all users that had read access to previous copy.

02 Aug 2021 23:39:52,161 INFO : Setting the TargetedMS folder type to 'Experimental Data'

02 Aug 2021 23:39:52,168 INFO : Updating the 'Raw Data' tab configuration

02 Aug 2021 23:39:52,171 INFO : Updating dataFileUrls for run SEC_HeLa_MG132_2020-12-18_00-32-52.sky.zip; targetedms run ID 117406

02 Aug 2021 23:39:52,171 INFO : Updating dataFileUrl...

02 Aug 2021 23:39:52,171 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TUM%20Kuster%20Lab%20-%20Zecha%20et%20al.%202020_cdc262ce-d64f-1039-937c-fea6ddf55d1e/_temp__2021-08-02_23-21-51/export/xar/experiments_and_runs.xar.exploded/Run96502/SEC_HeLa_MG132_2020-12-18_00-32-52/SEC_HeLa_MG132.skyd

02 Aug 2021 23:39:52,171 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/TUM%20Kuster%20Lab%20-%20Zecha%20et%20al.%202020/@files/SEC_HeLa_MG132_2020-12-18_00-32-52/SEC_HeLa_MG132.skyd

02 Aug 2021 23:39:52,174 INFO : Updating dataFileUrl...

02 Aug 2021 23:39:52,174 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TUM%20Kuster%20Lab%20-%20Zecha%20et%20al.%202020_cdc262ce-d64f-1039-937c-fea6ddf55d1e/_temp__2021-08-02_23-21-51/export/xar/experiments_and_runs.xar.exploded/Run96502/SEC_HeLa_MG132_2020-12-18_00-32-52.sky.zip

02 Aug 2021 23:39:52,174 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/TUM%20Kuster%20Lab%20-%20Zecha%20et%20al.%202020/@files/SEC_HeLa_MG132_2020-12-18_00-32-52.sky.zip

02 Aug 2021 23:39:52,177 INFO : Updating dataFileUrls for run SEC_RPMI8226_BTZ_2020-12-18_00-57-57.sky.zip; targetedms run ID 117407

02 Aug 2021 23:39:52,177 INFO : Updating dataFileUrl...

02 Aug 2021 23:39:52,177 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TUM%20Kuster%20Lab%20-%20Zecha%20et%20al.%202020_cdc262ce-d64f-1039-937c-fea6ddf55d1e/_temp__2021-08-02_23-21-51/export/xar/experiments_and_runs.xar.exploded/Run96503/SEC_RPMI8226_BTZ_2020-12-18_00-57-57.sky.zip

02 Aug 2021 23:39:52,177 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/TUM%20Kuster%20Lab%20-%20Zecha%20et%20al.%202020/@files/SEC_RPMI8226_BTZ_2020-12-18_00-57-57.sky.zip

02 Aug 2021 23:39:52,179 INFO : Updating dataFileUrl...

02 Aug 2021 23:39:52,179 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/TUM%20Kuster%20Lab%20-%20Zecha%20et%20al.%202020_cdc262ce-d64f-1039-937c-fea6ddf55d1e/_temp__2021-08-02_23-21-51/export/xar/experiments_and_runs.xar.exploded/Run96503/SEC_RPMI8226_BTZ_2020-12-18_00-57-57/SEC_RPMI8226_BTZ.skyd

02 Aug 2021 23:39:52,179 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/TUM%20Kuster%20Lab%20-%20Zecha%20et%20al.%202020/@files/SEC_RPMI8226_BTZ_2020-12-18_00-57-57/SEC_RPMI8226_BTZ.skyd

02 Aug 2021 23:39:52,181 INFO : Updating dataFileUrls for run FBXW7_KD_phosphoTKT&UNG_R1_2020-12-18_11-59-13.sky.zip; targetedms run ID 117408

02 Aug 2021 23:39:52,181 INFO : Updating dataFileUrl...

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02 Aug 2021 23:39:52,185 INFO : Updating dataFileUrls for run FBXW7_OE_phosphoTKT&UNG_R1_2020-12-18_12-00-22.sky.zip; targetedms run ID 117409

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02 Aug 2021 23:39:52,188 INFO : Updating dataFileUrls for run FBXW7_OE_phosphoTKT&UNG_R2_2020-12-18_12-01-26.sky.zip; targetedms run ID 117410

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02 Aug 2021 23:39:52,195 INFO : Updating dataFileUrls for run FBWX7_TKT_ubi_2021-08-01_05-53-31.sky.zip; targetedms run ID 117412

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02 Aug 2021 23:39:52,197 INFO : Updating dataFileUrl...

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02 Aug 2021 23:39:52,198 INFO : Hiding the Data Pipeline tab.

02 Aug 2021 23:39:52,321 INFO : Emailing submitter.

02 Aug 2021 23:39:52,445 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'