20 Sep 2022 09:01:13,229 INFO : Validating data for a ProteomeXchange submission.

20 Sep 2022 09:01:13,230 INFO : =======================================

20 Sep 2022 09:01:13,275 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.PxDataValidationTask' at location 'webserver'

20 Sep 2022 09:01:13,276 INFO : Validating data for experiment Id: 1166, validation Id: 202

20 Sep 2022 09:01:13,449 INFO : Validating data for 6 Skyline documents in 3 folders

20 Sep 2022 09:01:13,706 INFO : Sample file validation for Skyline document: TNBC_data_analysis_E2_B1-B2-B3-B4_M2_2021-03-11_15-16-16.sky.zip

20 Sep 2022 09:01:13,706 INFO :   Found all sample files.

20 Sep 2022 09:01:13,944 INFO : Sample file validation for Skyline document: TNBC_data_analysis_E2_B1-B2-B3-B4_M1_2021-03-11_12-34-11.sky.zip

20 Sep 2022 09:01:13,944 INFO :   Found all sample files.

20 Sep 2022 09:01:14,183 INFO : Sample file validation for Skyline document: TNBC_data_analysis_E1_B1-B2-B3-B4_M2_2021-03-10_10-50-09.sky.zip

20 Sep 2022 09:01:14,183 INFO :   Found all sample files.

20 Sep 2022 09:01:14,388 INFO : Sample file validation for Skyline document: TNBC_data_analysis_E1_B1-B2-B3-B4_M1_2021-03-10_10-29-03.sky.zip

20 Sep 2022 09:01:14,388 INFO :   Found all sample files.

20 Sep 2022 09:01:14,445 INFO : Sample file validation for Skyline document: TNBC_missing_ESR_E1_B1_M1andM2_2021-03-09_17-14-17.sky.zip

20 Sep 2022 09:01:14,445 INFO :   Found all sample files.

20 Sep 2022 09:01:14,588 INFO : Sample file validation for Skyline document: TNBC_peptides_after_screening_1_chrom_library_build_2021-03-31_09-00-56.sky.zip

20 Sep 2022 09:01:14,589 INFO :   Found all sample files.

20 Sep 2022 09:01:14,739 INFO : Modifications validation:

20 Sep 2022 09:01:14,739 INFO : VALID MODIFICATIONS:

20 Sep 2022 09:01:14,739 INFO : 670: Label:13C(6)15N(2) (C-term K): 

20 Sep 2022 09:01:14,740 INFO :     TNBC_peptides_after_screening_1_chrom_library_build_2021-03-31_09-00-56.sky.zip

20 Sep 2022 09:01:14,740 INFO :     TNBC_data_analysis_E1_B1-B2-B3-B4_M2_2021-03-10_10-50-09.sky.zip

20 Sep 2022 09:01:14,740 INFO :     TNBC_data_analysis_E1_B1-B2-B3-B4_M1_2021-03-10_10-29-03.sky.zip

20 Sep 2022 09:01:14,740 INFO :     TNBC_data_analysis_E2_B1-B2-B3-B4_M1_2021-03-11_12-34-11.sky.zip

20 Sep 2022 09:01:14,740 INFO :     TNBC_data_analysis_E2_B1-B2-B3-B4_M2_2021-03-11_15-16-16.sky.zip

20 Sep 2022 09:01:14,740 INFO : 671: Label:13C(6)15N(4) (C-term R): 

20 Sep 2022 09:01:14,740 INFO :     TNBC_peptides_after_screening_1_chrom_library_build_2021-03-31_09-00-56.sky.zip

20 Sep 2022 09:01:14,740 INFO :     TNBC_data_analysis_E1_B1-B2-B3-B4_M2_2021-03-10_10-50-09.sky.zip

20 Sep 2022 09:01:14,740 INFO :     TNBC_missing_ESR_E1_B1_M1andM2_2021-03-09_17-14-17.sky.zip

20 Sep 2022 09:01:14,740 INFO :     TNBC_data_analysis_E1_B1-B2-B3-B4_M1_2021-03-10_10-29-03.sky.zip

20 Sep 2022 09:01:14,740 INFO :     TNBC_data_analysis_E2_B1-B2-B3-B4_M1_2021-03-11_12-34-11.sky.zip

20 Sep 2022 09:01:14,740 INFO :     TNBC_data_analysis_E2_B1-B2-B3-B4_M2_2021-03-11_15-16-16.sky.zip

20 Sep 2022 09:01:14,740 INFO : INVALID MODIFICATIONS (No Unimod ID):

20 Sep 2022 09:01:14,740 INFO : 669: Carbamidomethyl Cysteine: No UNIMOD Id

20 Sep 2022 09:01:14,740 INFO :     TNBC_peptides_after_screening_1_chrom_library_build_2021-03-31_09-00-56.sky.zip

20 Sep 2022 09:01:14,740 INFO :     TNBC_data_analysis_E1_B1-B2-B3-B4_M2_2021-03-10_10-50-09.sky.zip

20 Sep 2022 09:01:14,740 INFO :     TNBC_data_analysis_E1_B1-B2-B3-B4_M1_2021-03-10_10-29-03.sky.zip

20 Sep 2022 09:01:14,740 INFO :     TNBC_data_analysis_E2_B1-B2-B3-B4_M1_2021-03-11_12-34-11.sky.zip

20 Sep 2022 09:01:14,740 INFO :     TNBC_data_analysis_E2_B1-B2-B3-B4_M2_2021-03-11_15-16-16.sky.zip

20 Sep 2022 09:01:14,743 INFO : Validating spectral library: Chromatogram_library_TNBC_synthetic_heavy_peptides_rev1.clib

20 Sep 2022 09:01:14,751 INFO : 'chromatogram_library_TNBC_synthetic_heavy_peptides' (Chromatogram_library_TNBC_synthetic_heavy_peptides_rev1.clib) library in 5 Skyline documents was built with 0 raw files; 0 peptide Id files. Status: chromatogram library type is not supported.

20 Sep 2022 09:01:14,754 INFO : Validating spectral library: TNBC_peptide_pool_QExactive_20141110.blib

20 Sep 2022 09:01:14,871 INFO : 'TNBC_peptide_pool_QExactive_20141110' (TNBC_peptide_pool_QExactive_20141110.blib) library in 1 Skyline documents was built with 10 raw files; 0 peptide Id files. Status: Missing spectrum  files. Missing peptide ID file names in the .blib file.

20 Sep 2022 09:01:14,871 INFO :   MISSING FILES:

20 Sep 2022 09:01:14,871 INFO :     Spectrum File: TNBC_Pool_20fmol_ul_01_20141103.raw

20 Sep 2022 09:01:14,871 INFO :     Spectrum File: TNBC_Pool_20fmol_ul_01_20141105.raw

20 Sep 2022 09:01:14,871 INFO :     Spectrum File: TNBC_Pool_20fmol_ul_02_20141103.raw

20 Sep 2022 09:01:14,871 INFO :     Spectrum File: TNBC_Pool_20fmol_ul_02_20141105.raw

20 Sep 2022 09:01:14,871 INFO :     Spectrum File: TNBC_Pool_20fmol_ul_03_20141103.raw

20 Sep 2022 09:01:14,871 INFO :     Spectrum File: TNBC_Pool_20fmol_ul_03_20141105.raw

20 Sep 2022 09:01:14,871 INFO :     Spectrum File: TNBC_Pool_20fmol_ul_04_20141103.raw

20 Sep 2022 09:01:14,871 INFO :     Spectrum File: TNBC_Pool_20fmol_ul_04_20141105.raw

20 Sep 2022 09:01:14,871 INFO :     Spectrum File: TNBC_Pool_20fmol_ul_05_20141103.raw

20 Sep 2022 09:01:14,871 INFO :     Spectrum File: TNBC_Pool_20fmol_ul_05_20141105.raw

20 Sep 2022 09:01:14,871 INFO : Spectral library validation complete.

20 Sep 2022 09:01:14,872 INFO : Data validation is complete. Status is IncompleteMetadata

20 Sep 2022 09:01:14,872 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.PxDataValidationTask'