09 Dec 2021 15:16:05,183 INFO : Copying experiment "Preserving the phosphoproteome of clinical biopsies using a quick freeze collection device" from folder /Paulovich/PO4_preservation_in_PDX_tumors_MRM to /Panorama Public/2021/Paulovich - PO4_preservation_in_PDX_tumors_MRM
09 Dec 2021 15:16:05,183 INFO : =======================================
09 Dec 2021 15:16:05,369 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
09 Dec 2021 15:16:05,370 INFO :
09 Dec 2021 15:16:05,370 INFO : Exporting experiment.
09 Dec 2021 15:17:20,358 INFO :
09 Dec 2021 15:17:20,358 INFO : Experiment export completed successfully.
09 Dec 2021 15:17:20,358 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
09 Dec 2021 15:17:20,415 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
09 Dec 2021 15:17:20,415 INFO :
09 Dec 2021 15:17:20,415 INFO : Importing experiment.
09 Dec 2021 15:17:20,418 INFO : Loading folder properties (folder type, settings and active modules)
09 Dec 2021 15:17:20,493 INFO : Done importing folder properties (folder type, settings and active modules)
09 Dec 2021 15:17:20,496 INFO : Loading queries
09 Dec 2021 15:17:20,524 INFO : 6 queries imported
09 Dec 2021 15:17:20,524 INFO : Done importing queries
09 Dec 2021 15:17:20,526 INFO : Loading etl definitions
09 Dec 2021 15:17:20,528 INFO : Loading wikis
09 Dec 2021 15:17:20,530 INFO : 0 wikis imported
09 Dec 2021 15:17:20,530 INFO : Done importing wikis
09 Dec 2021 15:17:20,530 INFO : Starting to copy files
09 Dec 2021 15:18:03,709 INFO : Copied 53 files
09 Dec 2021 15:18:03,709 INFO : Ensuring exp.data rows exist for imported files
09 Dec 2021 15:18:03,939 INFO : Starting Sample Type and Data Class import
09 Dec 2021 15:18:03,940 INFO : No types XAR file to process.
09 Dec 2021 15:18:03,940 INFO : Finished importing Sample Types and Data Classes
09 Dec 2021 15:18:03,941 INFO : Loading xar
09 Dec 2021 15:18:08,137 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9411:TargetedMS.ImportSkyZip'
09 Dec 2021 15:18:08,140 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9411:TargetedMS.ImportSkyZip.Core'
09 Dec 2021 15:18:08,148 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-9411:TargetedMS.ImportSkyZip.Output'
09 Dec 2021 15:18:08,149 DEBUG: Protocol import complete
09 Dec 2021 15:18:08,151 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-9411:Preserving+the+phosphoproteome+of+clinical+biopsies+using+a+quick+freeze+collection+device'
09 Dec 2021 15:18:08,151 DEBUG: Experiment/Run group import complete
09 Dec 2021 15:18:08,162 DEBUG: Protocol action set import complete
09 Dec 2021 15:18:08,178 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9411:TargetedMS.ImportSkyZip'
09 Dec 2021 15:18:08,191 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9411:13055855-3b5e-103a-8339-fea6ddf5e014'
09 Dec 2021 15:18:08,198 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9411:cb8175ee-3b5b-103a-8339-fea6ddf5e014'
09 Dec 2021 15:18:08,198 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9411:TargetedMS.ImportSkyZip.Core'
09 Dec 2021 15:18:08,202 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9411:TargetedMS.ImportSkyZip.Output'
09 Dec 2021 15:18:08,202 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9411:13055900-3b5e-103a-8339-fea6ddf5e014'
09 Dec 2021 15:18:08,210 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9411:TargetedMS.ImportSkyZip'
09 Dec 2021 15:18:08,216 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9411:1305715d-3b5e-103a-8339-fea6ddf5e014'
09 Dec 2021 15:18:08,221 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9411:13057127-3b5e-103a-8339-fea6ddf5e014'
09 Dec 2021 15:18:08,221 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9411:TargetedMS.ImportSkyZip.Core'
09 Dec 2021 15:18:08,224 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9411:TargetedMS.ImportSkyZip.Output'
09 Dec 2021 15:18:08,225 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9411:13057239-3b5e-103a-8339-fea6ddf5e014'
09 Dec 2021 15:18:08,232 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9411:TargetedMS.ImportSkyZip'
09 Dec 2021 15:18:08,238 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-9411:13056cbc-3b5e-103a-8339-fea6ddf5e014'
09 Dec 2021 15:18:08,243 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-9411:13056c34-3b5e-103a-8339-fea6ddf5e014'
09 Dec 2021 15:18:08,243 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9411:TargetedMS.ImportSkyZip.Core'
09 Dec 2021 15:18:08,245 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-9411:TargetedMS.ImportSkyZip.Output'
09 Dec 2021 15:18:08,246 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-9411:13056d30-3b5e-103a-8339-fea6ddf5e014'
09 Dec 2021 15:18:08,248 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20PO4_preservation_in_PDX_tumors_MRM_6a04c088-3b73-103a-8339-fea6ddf5e014/_temp__2021-12-09_15-16-04/export/xar/experiments_and_runs.xar.exploded/Run123693/PO4_preservation_in_PDX_tumors_IMAC_MRM_2021-12-09_12-37-18/PO4_preservation_in_PDX_tumors_IMAC_MRM.skyd into the system
09 Dec 2021 15:18:08,249 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20PO4_preservation_in_PDX_tumors_MRM_6a04c088-3b73-103a-8339-fea6ddf5e014/_temp__2021-12-09_15-16-04/export/xar/experiments_and_runs.xar.exploded/Run123693/PO4_preservation_in_PDX_tumors_IMAC_MRM_2021-12-09_12-37-18/PO4_preservation_in_PDX_tumors_IMAC_MRM.skyd into the system
09 Dec 2021 15:18:08,249 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20PO4_preservation_in_PDX_tumors_MRM_6a04c088-3b73-103a-8339-fea6ddf5e014/_temp__2021-12-09_15-16-04/export/xar/experiments_and_runs.xar.exploded/Run123693/PO4_preservation_in_PDX_tumors_IMAC_MRM_2021-12-09_12-37-18.sky.zip into the system
09 Dec 2021 15:18:08,251 INFO : Starting import from PO4_preservation_in_PDX_tumors_IMAC_MRM_2021-12-09_12-37-18.sky.zip
09 Dec 2021 15:18:08,255 INFO : Starting to import Skyline document from PO4_preservation_in_PDX_tumors_IMAC_MRM_2021-12-09_12-37-18.sky.zip
09 Dec 2021 15:18:08,276 INFO : Expanding All_PO4_SILAC_MSMS_cons.sptxt
09 Dec 2021 15:18:14,067 INFO : Expanding NCI56_SIS_MSMS_Velos.blib
09 Dec 2021 15:18:14,128 INFO : Expanding PO4_preservation_in_PDX_tumors_IMAC_MRM.skyd
09 Dec 2021 15:18:14,724 INFO : Expanding PO4_preservation_in_PDX_tumors_IMAC_MRM.sky.view
09 Dec 2021 15:18:14,724 INFO : Expanding PO4_preservation_in_PDX_tumors_IMAC_MRM.sky
09 Dec 2021 15:18:14,768 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22
09 Dec 2021 15:18:14,799 INFO : 1% Done
09 Dec 2021 15:18:15,897 DEBUG: Starting to load chromatogram headers
09 Dec 2021 15:18:15,976 DEBUG: Done loading chromatogram headers
09 Dec 2021 15:18:16,243 INFO : Inserting sp|O14639|ABLM1_HUMAN
09 Dec 2021 15:18:16,271 INFO : 3% Done
09 Dec 2021 15:18:16,597 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:16,599 INFO : Inserting sp|O60934|NBN_HUMAN
09 Dec 2021 15:18:16,617 INFO : 5% Done
09 Dec 2021 15:18:16,888 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:16,892 INFO : Inserting sp|O96013|PAK4_HUMAN
09 Dec 2021 15:18:16,918 INFO : 6% Done
09 Dec 2021 15:18:17,210 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:17,212 INFO : Inserting sp|P02545|LMNA_HUMAN
09 Dec 2021 15:18:17,232 INFO : 9% Done
09 Dec 2021 15:18:17,509 INFO : 10% Done
09 Dec 2021 15:18:17,764 DEBUG: Total peptides inserted: 2
09 Dec 2021 15:18:17,767 INFO : Inserting sp|P05412|JUN_HUMAN
09 Dec 2021 15:18:17,782 INFO : 13% Done
09 Dec 2021 15:18:18,043 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:18,045 INFO : Inserting sp|P06400|RB_HUMAN
09 Dec 2021 15:18:18,058 INFO : 14% Done
09 Dec 2021 15:18:18,303 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:18,306 INFO : Inserting sp|P06493|CDK1_HUMAN
09 Dec 2021 15:18:18,319 INFO : 16% Done
09 Dec 2021 15:18:18,563 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:18,566 INFO : Inserting sp|P08670|VIME_HUMAN
09 Dec 2021 15:18:18,587 INFO : 19% Done
09 Dec 2021 15:18:19,038 INFO : 21% Done
09 Dec 2021 15:18:19,281 DEBUG: Total peptides inserted: 2
09 Dec 2021 15:18:19,284 INFO : Inserting sp|P16949|STMN1_HUMAN
09 Dec 2021 15:18:19,298 INFO : 23% Done
09 Dec 2021 15:18:19,601 INFO : 26% Done
09 Dec 2021 15:18:19,895 DEBUG: Total peptides inserted: 2
09 Dec 2021 15:18:19,897 INFO : Inserting sp|P18615|NELFE_HUMAN
09 Dec 2021 15:18:19,909 INFO : 27% Done
09 Dec 2021 15:18:20,142 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:20,145 INFO : Inserting sp|P19338|NUCL_HUMAN
09 Dec 2021 15:18:20,158 INFO : 30% Done
09 Dec 2021 15:18:20,396 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:20,398 INFO : Inserting sp|P27816|MAP4_HUMAN
09 Dec 2021 15:18:20,412 INFO : 31% Done
09 Dec 2021 15:18:20,649 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:20,651 INFO : Inserting sp|P29966|MARCS_HUMAN
09 Dec 2021 15:18:20,663 INFO : 33% Done
09 Dec 2021 15:18:20,898 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:20,901 INFO : Inserting sp|P30050|RL12_HUMAN
09 Dec 2021 15:18:20,911 INFO : 35% Done
09 Dec 2021 15:18:21,145 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:21,147 INFO : Inserting sp|P36871|PGM1_HUMAN
09 Dec 2021 15:18:21,158 INFO : 37% Done
09 Dec 2021 15:18:21,406 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:21,409 INFO : Inserting sp|P38398|BRCA1_HUMAN
09 Dec 2021 15:18:21,420 INFO : 38% Done
09 Dec 2021 15:18:21,676 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:21,680 INFO : Inserting sp|P41162|ETV3_HUMAN
09 Dec 2021 15:18:21,691 INFO : 41% Done
09 Dec 2021 15:18:21,937 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:21,939 INFO : Inserting sp|P42167|LAP2B_HUMAN
09 Dec 2021 15:18:21,951 INFO : 42% Done
09 Dec 2021 15:18:22,191 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:22,194 INFO : Inserting sp|P49736|MCM2_HUMAN
09 Dec 2021 15:18:22,205 INFO : 44% Done
09 Dec 2021 15:18:22,454 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:22,456 INFO : Inserting sp|Q13315|ATM_HUMAN
09 Dec 2021 15:18:22,467 INFO : 46% Done
09 Dec 2021 15:18:22,722 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:22,724 INFO : Inserting sp|Q13459|MYO9B_HUMAN
09 Dec 2021 15:18:22,736 INFO : 48% Done
09 Dec 2021 15:18:23,039 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:23,041 INFO : Inserting sp|Q14247|SRC8_HUMAN
09 Dec 2021 15:18:23,056 INFO : 50% Done
09 Dec 2021 15:18:23,359 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:23,361 INFO : Inserting sp|Q14980|NUMA1_HUMAN
09 Dec 2021 15:18:23,373 INFO : 52% Done
09 Dec 2021 15:18:23,638 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:23,641 INFO : Inserting sp|Q15554|TERF2_HUMAN
09 Dec 2021 15:18:23,654 INFO : 54% Done
09 Dec 2021 15:18:23,931 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:23,933 INFO : Inserting sp|Q7Z417|NUFP2_HUMAN
09 Dec 2021 15:18:23,947 INFO : 56% Done
09 Dec 2021 15:18:24,193 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:24,195 INFO : Inserting sp|Q8IY67-2|RAVR1_HUMAN
09 Dec 2021 15:18:24,208 INFO : 58% Done
09 Dec 2021 15:18:24,445 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:24,447 INFO : Inserting sp|Q8WUI4|HDAC7_HUMAN
09 Dec 2021 15:18:24,460 INFO : 60% Done
09 Dec 2021 15:18:24,741 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:24,745 INFO : Inserting sp|Q8WXE1|ATRIP_HUMAN
09 Dec 2021 15:18:24,764 INFO : 62% Done
09 Dec 2021 15:18:25,019 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:25,022 INFO : Inserting sp|Q96QC0|PP1RA_HUMAN
09 Dec 2021 15:18:25,034 INFO : 64% Done
09 Dec 2021 15:18:25,287 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:25,289 INFO : Inserting sp|Q96TA1|NIBL1_HUMAN
09 Dec 2021 15:18:25,306 INFO : 66% Done
09 Dec 2021 15:18:25,643 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:25,645 INFO : Inserting sp|Q9BQG0|MBB1A_HUMAN
09 Dec 2021 15:18:25,659 INFO : 68% Done
09 Dec 2021 15:18:25,927 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:25,930 INFO : Inserting sp|Q9BVJ6|UT14A_HUMAN
09 Dec 2021 15:18:25,943 INFO : 70% Done
09 Dec 2021 15:18:26,198 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:26,200 INFO : Inserting sp|Q9HB19|PKHA2_HUMAN
09 Dec 2021 15:18:26,211 INFO : 72% Done
09 Dec 2021 15:18:26,450 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:26,452 INFO : Inserting sp|Q9UKI2|BORG2_HUMAN
09 Dec 2021 15:18:26,464 INFO : 74% Done
09 Dec 2021 15:18:26,715 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:26,717 INFO : Inserting sp|Q9ULW0|TPX2_HUMAN
09 Dec 2021 15:18:26,729 INFO : 76% Done
09 Dec 2021 15:18:26,983 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:26,986 INFO : Inserting sp|Q9Y6D9|MD1L1_HUMAN
09 Dec 2021 15:18:26,997 INFO : 78% Done
09 Dec 2021 15:18:27,234 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:27,237 INFO : Inserting sp|Q9Y6G9|DC1L1_HUMAN
09 Dec 2021 15:18:27,251 INFO : 80% Done
09 Dec 2021 15:18:27,540 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:27,541 INFO : Done parsing Skyline document.
09 Dec 2021 15:18:27,547 INFO : No group comparisons found.
09 Dec 2021 15:18:27,547 INFO : Calculating calibration curves
09 Dec 2021 15:18:27,548 DEBUG: Calculating calibration curve for sp|O14639|ABLM1_HUMAN, 1 of 37
09 Dec 2021 15:18:27,591 INFO : 81% Done
09 Dec 2021 15:18:27,591 DEBUG: Calculating calibration curve for sp|O60934|NBN_HUMAN, 2 of 37
09 Dec 2021 15:18:27,623 DEBUG: Calculating calibration curve for sp|O96013|PAK4_HUMAN, 3 of 37
09 Dec 2021 15:18:27,653 DEBUG: Calculating calibration curve for sp|P02545|LMNA_HUMAN, 4 of 37
09 Dec 2021 15:18:27,716 INFO : 82% Done
09 Dec 2021 15:18:27,716 DEBUG: Calculating calibration curve for sp|P05412|JUN_HUMAN, 5 of 37
09 Dec 2021 15:18:27,747 INFO : 83% Done
09 Dec 2021 15:18:27,747 DEBUG: Calculating calibration curve for sp|P06400|RB_HUMAN, 6 of 37
09 Dec 2021 15:18:27,777 DEBUG: Calculating calibration curve for sp|P06493|CDK1_HUMAN, 7 of 37
09 Dec 2021 15:18:27,806 DEBUG: Calculating calibration curve for sp|P08670|VIME_HUMAN, 8 of 37
09 Dec 2021 15:18:27,880 INFO : 84% Done
09 Dec 2021 15:18:27,881 DEBUG: Calculating calibration curve for sp|P16949|STMN1_HUMAN, 9 of 37
09 Dec 2021 15:18:27,949 DEBUG: Calculating calibration curve for sp|P18615|NELFE_HUMAN, 10 of 37
09 Dec 2021 15:18:27,978 INFO : 85% Done
09 Dec 2021 15:18:27,978 DEBUG: Calculating calibration curve for sp|P19338|NUCL_HUMAN, 11 of 37
09 Dec 2021 15:18:28,007 DEBUG: Calculating calibration curve for sp|P27816|MAP4_HUMAN, 12 of 37
09 Dec 2021 15:18:28,040 INFO : 86% Done
09 Dec 2021 15:18:28,040 DEBUG: Calculating calibration curve for sp|P29966|MARCS_HUMAN, 13 of 37
09 Dec 2021 15:18:28,069 DEBUG: Calculating calibration curve for sp|P30050|RL12_HUMAN, 14 of 37
09 Dec 2021 15:18:28,100 INFO : 87% Done
09 Dec 2021 15:18:28,100 DEBUG: Calculating calibration curve for sp|P36871|PGM1_HUMAN, 15 of 37
09 Dec 2021 15:18:28,145 DEBUG: Calculating calibration curve for sp|P38398|BRCA1_HUMAN, 16 of 37
09 Dec 2021 15:18:28,184 INFO : 88% Done
09 Dec 2021 15:18:28,184 DEBUG: Calculating calibration curve for sp|P41162|ETV3_HUMAN, 17 of 37
09 Dec 2021 15:18:28,220 DEBUG: Calculating calibration curve for sp|P42167|LAP2B_HUMAN, 18 of 37
09 Dec 2021 15:18:28,257 INFO : 89% Done
09 Dec 2021 15:18:28,257 DEBUG: Calculating calibration curve for sp|P49736|MCM2_HUMAN, 19 of 37
09 Dec 2021 15:18:28,295 DEBUG: Calculating calibration curve for sp|Q13315|ATM_HUMAN, 20 of 37
09 Dec 2021 15:18:28,329 INFO : 90% Done
09 Dec 2021 15:18:28,329 DEBUG: Calculating calibration curve for sp|Q13459|MYO9B_HUMAN, 21 of 37
09 Dec 2021 15:18:28,365 DEBUG: Calculating calibration curve for sp|Q14247|SRC8_HUMAN, 22 of 37
09 Dec 2021 15:18:28,406 INFO : 91% Done
09 Dec 2021 15:18:28,406 DEBUG: Calculating calibration curve for sp|Q14980|NUMA1_HUMAN, 23 of 37
09 Dec 2021 15:18:28,436 DEBUG: Calculating calibration curve for sp|Q15554|TERF2_HUMAN, 24 of 37
09 Dec 2021 15:18:28,468 INFO : 92% Done
09 Dec 2021 15:18:28,468 DEBUG: Calculating calibration curve for sp|Q7Z417|NUFP2_HUMAN, 25 of 37
09 Dec 2021 15:18:28,497 DEBUG: Calculating calibration curve for sp|Q8IY67-2|RAVR1_HUMAN, 26 of 37
09 Dec 2021 15:18:28,525 INFO : 93% Done
09 Dec 2021 15:18:28,526 DEBUG: Calculating calibration curve for sp|Q8WUI4|HDAC7_HUMAN, 27 of 37
09 Dec 2021 15:18:28,552 DEBUG: Calculating calibration curve for sp|Q8WXE1|ATRIP_HUMAN, 28 of 37
09 Dec 2021 15:18:28,579 INFO : 94% Done
09 Dec 2021 15:18:28,579 DEBUG: Calculating calibration curve for sp|Q96QC0|PP1RA_HUMAN, 29 of 37
09 Dec 2021 15:18:28,605 DEBUG: Calculating calibration curve for sp|Q96TA1|NIBL1_HUMAN, 30 of 37
09 Dec 2021 15:18:28,645 INFO : 95% Done
09 Dec 2021 15:18:28,645 DEBUG: Calculating calibration curve for sp|Q9BQG0|MBB1A_HUMAN, 31 of 37
09 Dec 2021 15:18:28,671 DEBUG: Calculating calibration curve for sp|Q9BVJ6|UT14A_HUMAN, 32 of 37
09 Dec 2021 15:18:28,697 DEBUG: Calculating calibration curve for sp|Q9HB19|PKHA2_HUMAN, 33 of 37
09 Dec 2021 15:18:28,724 INFO : 96% Done
09 Dec 2021 15:18:28,724 DEBUG: Calculating calibration curve for sp|Q9UKI2|BORG2_HUMAN, 34 of 37
09 Dec 2021 15:18:28,752 INFO : 97% Done
09 Dec 2021 15:18:28,752 DEBUG: Calculating calibration curve for sp|Q9ULW0|TPX2_HUMAN, 35 of 37
09 Dec 2021 15:18:28,777 DEBUG: Calculating calibration curve for sp|Q9Y6D9|MD1L1_HUMAN, 36 of 37
09 Dec 2021 15:18:28,803 DEBUG: Calculating calibration curve for sp|Q9Y6G9|DC1L1_HUMAN, 37 of 37
09 Dec 2021 15:18:28,837 INFO : 98% Done
09 Dec 2021 15:18:28,844 INFO : Done calculating calibration curves.
09 Dec 2021 15:18:28,845 INFO : Creating and populating temp tables for Proportion values
09 Dec 2021 15:18:28,921 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
09 Dec 2021 15:18:29,296 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
09 Dec 2021 15:18:29,461 INFO : Cleaning up temp tables
09 Dec 2021 15:18:29,670 INFO : Completed import of Skyline document from PO4_preservation_in_PDX_tumors_IMAC_MRM_2021-12-09_12-37-18.sky.zip
09 Dec 2021 15:18:29,673 INFO : 100% Done
09 Dec 2021 15:18:29,676 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20PO4_preservation_in_PDX_tumors_MRM_6a04c088-3b73-103a-8339-fea6ddf5e014/_temp__2021-12-09_15-16-04/export/xar/experiments_and_runs.xar.exploded/Run123693/PO4_preservation_in_PDX_tumors_IMAC_MRM_2021-12-09_12-37-18.sky.zip into the system
09 Dec 2021 15:18:29,677 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20PO4_preservation_in_PDX_tumors_MRM_6a04c088-3b73-103a-8339-fea6ddf5e014/_temp__2021-12-09_15-16-04/export/xar/experiments_and_runs.xar.exploded/Run123695/PO4_preservation_in_PDX_tumors_Immuno_1_MRM_2021-12-09_12-48-23/PO4_preservation_in_PDX_tumors_Immuno_1_MRM.skyd into the system
09 Dec 2021 15:18:29,677 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20PO4_preservation_in_PDX_tumors_MRM_6a04c088-3b73-103a-8339-fea6ddf5e014/_temp__2021-12-09_15-16-04/export/xar/experiments_and_runs.xar.exploded/Run123695/PO4_preservation_in_PDX_tumors_Immuno_1_MRM_2021-12-09_12-48-23/PO4_preservation_in_PDX_tumors_Immuno_1_MRM.skyd into the system
09 Dec 2021 15:18:29,677 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20PO4_preservation_in_PDX_tumors_MRM_6a04c088-3b73-103a-8339-fea6ddf5e014/_temp__2021-12-09_15-16-04/export/xar/experiments_and_runs.xar.exploded/Run123695/PO4_preservation_in_PDX_tumors_Immuno_1_MRM_2021-12-09_12-48-23.sky.zip into the system
09 Dec 2021 15:18:29,678 INFO : Starting import from PO4_preservation_in_PDX_tumors_Immuno_1_MRM_2021-12-09_12-48-23.sky.zip
09 Dec 2021 15:18:29,680 INFO : Starting to import Skyline document from PO4_preservation_in_PDX_tumors_Immuno_1_MRM_2021-12-09_12-48-23.sky.zip
09 Dec 2021 15:18:29,690 INFO : Expanding RAS_Precision_mAbs_Nonphospho_peps.blib
09 Dec 2021 15:18:29,702 INFO : Expanding Cons_all_FHCRC_Broad_Q3.sptxt
09 Dec 2021 15:18:32,432 INFO : Expanding PO4_preservation_in_PDX_tumors_Immuno_1_MRM.skyd
09 Dec 2021 15:18:32,725 INFO : Expanding PO4_preservation_in_PDX_tumors_Immuno_1_MRM.sky.view
09 Dec 2021 15:18:32,726 INFO : Expanding PO4_preservation_in_PDX_tumors_Immuno_1_MRM.sky
09 Dec 2021 15:18:32,766 WARN : The version of this Skyline document is 21.12. This is newer than the highest supported version 20.22
09 Dec 2021 15:18:32,774 INFO : 1% Done
09 Dec 2021 15:18:33,246 DEBUG: Starting to load chromatogram headers
09 Dec 2021 15:18:33,267 DEBUG: Done loading chromatogram headers
09 Dec 2021 15:18:33,547 INFO : Inserting sp|O00762|UBE2C_HUMAN
09 Dec 2021 15:18:33,567 INFO : 2% Done
09 Dec 2021 15:18:33,836 INFO : 4% Done
09 Dec 2021 15:18:34,024 DEBUG: Total peptides inserted: 2
09 Dec 2021 15:18:34,026 INFO : Inserting sp|O43502|RA51C_HUMAN
09 Dec 2021 15:18:34,042 INFO : 6% Done
09 Dec 2021 15:18:34,323 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:34,325 INFO : Inserting sp|O60934|NBN_HUMAN
09 Dec 2021 15:18:34,337 INFO : 8% Done
09 Dec 2021 15:18:34,578 INFO : 10% Done
09 Dec 2021 15:18:34,869 INFO : 13% Done
09 Dec 2021 15:18:35,097 DEBUG: Total peptides inserted: 3
09 Dec 2021 15:18:35,100 INFO : Inserting sp|P04406|G3P_HUMAN
09 Dec 2021 15:18:35,112 INFO : 14% Done
09 Dec 2021 15:18:35,338 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:35,340 INFO : Inserting sp|P05412|JUN_HUMAN
09 Dec 2021 15:18:35,351 INFO : 16% Done
09 Dec 2021 15:18:35,600 INFO : 18% Done
09 Dec 2021 15:18:35,878 DEBUG: Total peptides inserted: 2
09 Dec 2021 15:18:35,881 INFO : Inserting sp|P06400|RB_HUMAN
09 Dec 2021 15:18:35,893 INFO : 21% Done
09 Dec 2021 15:18:36,121 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:36,123 INFO : Inserting sp|P09874|PARP1_HUMAN
09 Dec 2021 15:18:36,140 INFO : 23% Done
09 Dec 2021 15:18:36,461 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:36,463 INFO : Inserting sp|P12004|PCNA_HUMAN
09 Dec 2021 15:18:36,474 INFO : 26% Done
09 Dec 2021 15:18:36,889 DEBUG: Total peptides inserted: 2
09 Dec 2021 15:18:36,892 INFO : Inserting sp|P31350|RIR2_HUMAN
09 Dec 2021 15:18:36,904 INFO : 29% Done
09 Dec 2021 15:18:37,201 INFO : 31% Done
09 Dec 2021 15:18:37,479 DEBUG: Total peptides inserted: 2
09 Dec 2021 15:18:37,481 INFO : Inserting sp|P38398|BRCA1_HUMAN
09 Dec 2021 15:18:37,497 INFO : 34% Done
09 Dec 2021 15:18:37,811 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:37,814 INFO : Inserting sp|P39748|FEN1_HUMAN
09 Dec 2021 15:18:37,825 INFO : 36% Done
09 Dec 2021 15:18:38,050 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:38,053 INFO : Inserting sp|P54727|RD23B_HUMAN
09 Dec 2021 15:18:38,063 INFO : 38% Done
09 Dec 2021 15:18:38,310 INFO : 41% Done
09 Dec 2021 15:18:38,678 DEBUG: Total peptides inserted: 2
09 Dec 2021 15:18:38,681 INFO : Inserting sp|P63279|UBC9_HUMAN
09 Dec 2021 15:18:38,692 INFO : 43% Done
09 Dec 2021 15:18:38,921 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:38,923 INFO : Inserting sp|Q13315|ATM_HUMAN
09 Dec 2021 15:18:38,948 INFO : 46% Done
09 Dec 2021 15:18:39,389 INFO : 50% Done
09 Dec 2021 15:18:39,772 INFO : 52% Done
09 Dec 2021 15:18:40,053 DEBUG: Total peptides inserted: 3
09 Dec 2021 15:18:40,055 INFO : Inserting sp|Q15554|TERF2_HUMAN
09 Dec 2021 15:18:40,066 INFO : 54% Done
09 Dec 2021 15:18:40,310 INFO : 57% Done
09 Dec 2021 15:18:40,599 DEBUG: Total peptides inserted: 2
09 Dec 2021 15:18:40,601 INFO : Inserting sp|Q8WXE1|ATRIP_HUMAN
09 Dec 2021 15:18:40,620 INFO : 59% Done
09 Dec 2021 15:18:40,962 INFO : 62% Done
09 Dec 2021 15:18:41,289 DEBUG: Total peptides inserted: 2
09 Dec 2021 15:18:41,291 INFO : Inserting sp|Q9BX63|FANCJ_HUMAN
09 Dec 2021 15:18:41,305 INFO : 65% Done
09 Dec 2021 15:18:41,606 INFO : 68% Done
09 Dec 2021 15:18:41,995 INFO : 70% Done
09 Dec 2021 15:18:42,289 INFO : 73% Done
09 Dec 2021 15:18:42,522 DEBUG: Total peptides inserted: 4
09 Dec 2021 15:18:42,525 INFO : Inserting sp|Q9NPD8|UBE2T_HUMAN
09 Dec 2021 15:18:42,538 INFO : 75% Done
09 Dec 2021 15:18:42,815 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:42,817 INFO : Inserting sp|Q9NS91|RAD18_HUMAN
09 Dec 2021 15:18:42,831 INFO : 78% Done
09 Dec 2021 15:18:43,108 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:43,110 INFO : Inserting sp|Q9NS91|RAD18_HUMAN
09 Dec 2021 15:18:43,126 INFO : 80% Done
09 Dec 2021 15:18:43,446 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:43,447 INFO : Done parsing Skyline document.
09 Dec 2021 15:18:43,454 INFO : No group comparisons found.
09 Dec 2021 15:18:43,454 INFO : Calculating calibration curves
09 Dec 2021 15:18:43,455 DEBUG: Calculating calibration curve for sp|O00762|UBE2C_HUMAN, 1 of 20
09 Dec 2021 15:18:43,514 INFO : 81% Done
09 Dec 2021 15:18:43,514 DEBUG: Calculating calibration curve for sp|O43502|RA51C_HUMAN, 2 of 20
09 Dec 2021 15:18:43,554 INFO : 82% Done
09 Dec 2021 15:18:43,554 DEBUG: Calculating calibration curve for sp|O60934|NBN_HUMAN, 3 of 20
09 Dec 2021 15:18:43,653 INFO : 83% Done
09 Dec 2021 15:18:43,653 DEBUG: Calculating calibration curve for sp|P04406|G3P_HUMAN, 4 of 20
09 Dec 2021 15:18:43,682 INFO : 84% Done
09 Dec 2021 15:18:43,682 DEBUG: Calculating calibration curve for sp|P05412|JUN_HUMAN, 5 of 20
09 Dec 2021 15:18:43,742 INFO : 85% Done
09 Dec 2021 15:18:43,742 DEBUG: Calculating calibration curve for sp|P06400|RB_HUMAN, 6 of 20
09 Dec 2021 15:18:43,768 DEBUG: Calculating calibration curve for sp|P09874|PARP1_HUMAN, 7 of 20
09 Dec 2021 15:18:43,810 INFO : 86% Done
09 Dec 2021 15:18:43,810 DEBUG: Calculating calibration curve for sp|P12004|PCNA_HUMAN, 8 of 20
09 Dec 2021 15:18:43,858 INFO : 87% Done
09 Dec 2021 15:18:43,858 DEBUG: Calculating calibration curve for sp|P31350|RIR2_HUMAN, 9 of 20
09 Dec 2021 15:18:43,926 INFO : 88% Done
09 Dec 2021 15:18:43,926 DEBUG: Calculating calibration curve for sp|P38398|BRCA1_HUMAN, 10 of 20
09 Dec 2021 15:18:43,961 INFO : 89% Done
09 Dec 2021 15:18:43,961 DEBUG: Calculating calibration curve for sp|P39748|FEN1_HUMAN, 11 of 20
09 Dec 2021 15:18:43,989 INFO : 90% Done
09 Dec 2021 15:18:43,989 DEBUG: Calculating calibration curve for sp|P54727|RD23B_HUMAN, 12 of 20
09 Dec 2021 15:18:44,064 INFO : 91% Done
09 Dec 2021 15:18:44,064 DEBUG: Calculating calibration curve for sp|P63279|UBC9_HUMAN, 13 of 20
09 Dec 2021 15:18:44,094 INFO : 92% Done
09 Dec 2021 15:18:44,094 DEBUG: Calculating calibration curve for sp|Q13315|ATM_HUMAN, 14 of 20
09 Dec 2021 15:18:44,233 INFO : 93% Done
09 Dec 2021 15:18:44,233 DEBUG: Calculating calibration curve for sp|Q15554|TERF2_HUMAN, 15 of 20
09 Dec 2021 15:18:44,300 INFO : 94% Done
09 Dec 2021 15:18:44,300 DEBUG: Calculating calibration curve for sp|Q8WXE1|ATRIP_HUMAN, 16 of 20
09 Dec 2021 15:18:44,383 DEBUG: Calculating calibration curve for sp|Q9BX63|FANCJ_HUMAN, 17 of 20
09 Dec 2021 15:18:44,527 INFO : 95% Done
09 Dec 2021 15:18:44,527 DEBUG: Calculating calibration curve for sp|Q9NPD8|UBE2T_HUMAN, 18 of 20
09 Dec 2021 15:18:44,565 INFO : 96% Done
09 Dec 2021 15:18:44,565 DEBUG: Calculating calibration curve for sp|Q9NS91|RAD18_HUMAN, 19 of 20
09 Dec 2021 15:18:44,602 INFO : 97% Done
09 Dec 2021 15:18:44,602 DEBUG: Calculating calibration curve for sp|Q9NS91|RAD18_HUMAN, 20 of 20
09 Dec 2021 15:18:44,655 INFO : 98% Done
09 Dec 2021 15:18:44,662 INFO : Done calculating calibration curves.
09 Dec 2021 15:18:44,663 INFO : Creating and populating temp tables for Proportion values
09 Dec 2021 15:18:44,733 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
09 Dec 2021 15:18:45,065 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
09 Dec 2021 15:18:45,180 INFO : Cleaning up temp tables
09 Dec 2021 15:18:45,375 INFO : Completed import of Skyline document from PO4_preservation_in_PDX_tumors_Immuno_1_MRM_2021-12-09_12-48-23.sky.zip
09 Dec 2021 15:18:45,378 INFO : 100% Done
09 Dec 2021 15:18:45,382 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20PO4_preservation_in_PDX_tumors_MRM_6a04c088-3b73-103a-8339-fea6ddf5e014/_temp__2021-12-09_15-16-04/export/xar/experiments_and_runs.xar.exploded/Run123695/PO4_preservation_in_PDX_tumors_Immuno_1_MRM_2021-12-09_12-48-23.sky.zip into the system
09 Dec 2021 15:18:45,382 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20PO4_preservation_in_PDX_tumors_MRM_6a04c088-3b73-103a-8339-fea6ddf5e014/_temp__2021-12-09_15-16-04/export/xar/experiments_and_runs.xar.exploded/Run123694/PO4_preservation_in_PDX_tumors_Immuno_2_MRM_2021-12-09_12-46-38/PO4_preservation_in_PDX_tumors_Immuno_2_MRM.skyd into the system
09 Dec 2021 15:18:45,382 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20PO4_preservation_in_PDX_tumors_MRM_6a04c088-3b73-103a-8339-fea6ddf5e014/_temp__2021-12-09_15-16-04/export/xar/experiments_and_runs.xar.exploded/Run123694/PO4_preservation_in_PDX_tumors_Immuno_2_MRM_2021-12-09_12-46-38/PO4_preservation_in_PDX_tumors_Immuno_2_MRM.skyd into the system
09 Dec 2021 15:18:45,382 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20PO4_preservation_in_PDX_tumors_MRM_6a04c088-3b73-103a-8339-fea6ddf5e014/_temp__2021-12-09_15-16-04/export/xar/experiments_and_runs.xar.exploded/Run123694/PO4_preservation_in_PDX_tumors_Immuno_2_MRM_2021-12-09_12-46-38.sky.zip into the system
09 Dec 2021 15:18:45,383 INFO : Starting import from PO4_preservation_in_PDX_tumors_Immuno_2_MRM_2021-12-09_12-46-38.sky.zip
09 Dec 2021 15:18:45,386 INFO : Starting to import Skyline document from PO4_preservation_in_PDX_tumors_Immuno_2_MRM_2021-12-09_12-46-38.sky.zip
09 Dec 2021 15:18:45,395 INFO : Expanding Cons_all_FHCRC_Broad_Q3.sptxt
09 Dec 2021 15:18:48,038 INFO : Expanding RAS_Precision_mAbs_Nonphospho_peps.blib
09 Dec 2021 15:18:48,052 INFO : Expanding PO4_preservation_in_PDX_tumors_Immuno_2_MRM.skyd
09 Dec 2021 15:18:48,306 INFO : Expanding PO4_preservation_in_PDX_tumors_Immuno_2_MRM.sky.view
09 Dec 2021 15:18:48,307 INFO : Expanding PO4_preservation_in_PDX_tumors_Immuno_2_MRM.sky
09 Dec 2021 15:18:48,344 WARN : The version of this Skyline document is 21.12. This is newer than the highest supported version 20.22
09 Dec 2021 15:18:48,385 INFO : 1% Done
09 Dec 2021 15:18:49,087 DEBUG: Starting to load chromatogram headers
09 Dec 2021 15:18:49,104 DEBUG: Done loading chromatogram headers
09 Dec 2021 15:18:49,367 INFO : Inserting sp|O96013|PAK4_HUMAN
09 Dec 2021 15:18:49,396 INFO : 5% Done
09 Dec 2021 15:18:49,819 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:49,822 INFO : Inserting sp|O96017|CHK2_HUMAN
09 Dec 2021 15:18:49,847 INFO : 9% Done
09 Dec 2021 15:18:50,267 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:50,269 INFO : Inserting sp|P04637|P53_HUMAN
09 Dec 2021 15:18:50,290 INFO : 13% Done
09 Dec 2021 15:18:50,658 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:50,661 INFO : Inserting sp|P06493|CDK1_HUMAN
09 Dec 2021 15:18:50,689 INFO : 17% Done
09 Dec 2021 15:18:51,106 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:51,108 INFO : Inserting sp|P07437|TBB5_HUMAN
09 Dec 2021 15:18:51,125 INFO : 20% Done
09 Dec 2021 15:18:51,440 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:51,442 INFO : Inserting sp|P20700|LMNB1_HUMAN
09 Dec 2021 15:18:51,486 INFO : 25% Done
09 Dec 2021 15:18:52,039 INFO : 30% Done
09 Dec 2021 15:18:52,546 DEBUG: Total peptides inserted: 2
09 Dec 2021 15:18:52,549 INFO : Inserting sp|P49959|MRE11_HUMAN
09 Dec 2021 15:18:52,573 INFO : 34% Done
09 Dec 2021 15:18:52,983 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:52,986 INFO : Inserting sp|P50613|CDK7_HUMAN
09 Dec 2021 15:18:53,010 INFO : 38% Done
09 Dec 2021 15:18:53,428 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:53,430 INFO : 39% Done
09 Dec 2021 15:18:53,432 INFO : Inserting sp|Q00987|MDM2_HUMAN
09 Dec 2021 15:18:53,470 INFO : 43% Done
09 Dec 2021 15:18:53,930 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:53,932 INFO : Inserting sp|Q12888|TP53B_HUMAN
09 Dec 2021 15:18:53,954 INFO : 47% Done
09 Dec 2021 15:18:54,319 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:54,322 INFO : Inserting sp|Q14980|NUMA1_HUMAN
09 Dec 2021 15:18:54,349 INFO : 51% Done
09 Dec 2021 15:18:54,772 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:54,775 INFO : Inserting sp|Q8NG31|CASC5_HUMAN
09 Dec 2021 15:18:54,801 INFO : 55% Done
09 Dec 2021 15:18:55,241 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:55,243 INFO : Inserting sp|Q92541|RTF1_HUMAN
09 Dec 2021 15:18:55,274 INFO : 59% Done
09 Dec 2021 15:18:55,799 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:55,802 INFO : Inserting sp|Q96ER3|SAAL1_HUMAN
09 Dec 2021 15:18:55,838 INFO : 63% Done
09 Dec 2021 15:18:56,388 INFO : 68% Done
09 Dec 2021 15:18:56,976 DEBUG: Total peptides inserted: 2
09 Dec 2021 15:18:56,980 INFO : Inserting sp|Q99638|RAD9A_HUMAN
09 Dec 2021 15:18:57,015 INFO : 72% Done
09 Dec 2021 15:18:57,523 DEBUG: Total peptides inserted: 1
09 Dec 2021 15:18:57,525 INFO : Inserting sp|Q9BVJ6|UT14A_HUMAN
09 Dec 2021 15:18:57,559 INFO : 76% Done
09 Dec 2021 15:18:58,101 INFO : 80% Done
09 Dec 2021 15:18:58,638 DEBUG: Total peptides inserted: 2
09 Dec 2021 15:18:58,640 INFO : Done parsing Skyline document.
09 Dec 2021 15:18:58,646 INFO : No group comparisons found.
09 Dec 2021 15:18:58,647 INFO : Calculating calibration curves
09 Dec 2021 15:18:58,647 DEBUG: Calculating calibration curve for sp|O96013|PAK4_HUMAN, 1 of 16
09 Dec 2021 15:18:58,711 INFO : 81% Done
09 Dec 2021 15:18:58,711 DEBUG: Calculating calibration curve for sp|O96017|CHK2_HUMAN, 2 of 16
09 Dec 2021 15:18:58,784 INFO : 82% Done
09 Dec 2021 15:18:58,784 DEBUG: Calculating calibration curve for sp|P04637|P53_HUMAN, 3 of 16
09 Dec 2021 15:18:58,840 INFO : 83% Done
09 Dec 2021 15:18:58,840 DEBUG: Calculating calibration curve for sp|P06493|CDK1_HUMAN, 4 of 16
09 Dec 2021 15:18:58,903 INFO : 85% Done
09 Dec 2021 15:18:58,903 DEBUG: Calculating calibration curve for sp|P07437|TBB5_HUMAN, 5 of 16
09 Dec 2021 15:18:58,951 INFO : 86% Done
09 Dec 2021 15:18:58,951 DEBUG: Calculating calibration curve for sp|P20700|LMNB1_HUMAN, 6 of 16
09 Dec 2021 15:18:59,102 INFO : 87% Done
09 Dec 2021 15:18:59,102 DEBUG: Calculating calibration curve for sp|P49959|MRE11_HUMAN, 7 of 16
09 Dec 2021 15:18:59,164 INFO : 88% Done
09 Dec 2021 15:18:59,164 DEBUG: Calculating calibration curve for sp|P50613|CDK7_HUMAN, 8 of 16
09 Dec 2021 15:18:59,225 INFO : 89% Done
09 Dec 2021 15:18:59,225 DEBUG: Calculating calibration curve for sp|Q00987|MDM2_HUMAN, 9 of 16
09 Dec 2021 15:18:59,291 INFO : 90% Done
09 Dec 2021 15:18:59,292 DEBUG: Calculating calibration curve for sp|Q12888|TP53B_HUMAN, 10 of 16
09 Dec 2021 15:18:59,346 INFO : 91% Done
09 Dec 2021 15:18:59,346 DEBUG: Calculating calibration curve for sp|Q14980|NUMA1_HUMAN, 11 of 16
09 Dec 2021 15:18:59,408 INFO : 92% Done
09 Dec 2021 15:18:59,408 DEBUG: Calculating calibration curve for sp|Q8NG31|CASC5_HUMAN, 12 of 16
09 Dec 2021 15:18:59,471 INFO : 94% Done
09 Dec 2021 15:18:59,471 DEBUG: Calculating calibration curve for sp|Q92541|RTF1_HUMAN, 13 of 16
09 Dec 2021 15:18:59,535 INFO : 95% Done
09 Dec 2021 15:18:59,535 DEBUG: Calculating calibration curve for sp|Q96ER3|SAAL1_HUMAN, 14 of 16
09 Dec 2021 15:18:59,659 INFO : 96% Done
09 Dec 2021 15:18:59,659 DEBUG: Calculating calibration curve for sp|Q99638|RAD9A_HUMAN, 15 of 16
09 Dec 2021 15:18:59,720 INFO : 97% Done
09 Dec 2021 15:18:59,720 DEBUG: Calculating calibration curve for sp|Q9BVJ6|UT14A_HUMAN, 16 of 16
09 Dec 2021 15:18:59,859 INFO : 98% Done
09 Dec 2021 15:18:59,865 INFO : Done calculating calibration curves.
09 Dec 2021 15:18:59,866 INFO : Creating and populating temp tables for Proportion values
09 Dec 2021 15:18:59,922 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
09 Dec 2021 15:19:00,112 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
09 Dec 2021 15:19:00,182 INFO : Cleaning up temp tables
09 Dec 2021 15:19:00,372 INFO : Completed import of Skyline document from PO4_preservation_in_PDX_tumors_Immuno_2_MRM_2021-12-09_12-46-38.sky.zip
09 Dec 2021 15:19:00,374 INFO : 100% Done
09 Dec 2021 15:19:00,379 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20PO4_preservation_in_PDX_tumors_MRM_6a04c088-3b73-103a-8339-fea6ddf5e014/_temp__2021-12-09_15-16-04/export/xar/experiments_and_runs.xar.exploded/Run123694/PO4_preservation_in_PDX_tumors_Immuno_2_MRM_2021-12-09_12-46-38.sky.zip into the system
09 Dec 2021 15:19:00,391 INFO : Done importing xar
09 Dec 2021 15:19:00,393 INFO : Loading pages and webpart properties
09 Dec 2021 15:19:00,465 INFO : Done importing pages and webpart properties
09 Dec 2021 15:19:00,465 INFO :
09 Dec 2021 15:19:00,465 INFO : Experiment import completed successfully.
09 Dec 2021 15:19:00,465 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
09 Dec 2021 15:19:00,511 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
09 Dec 2021 15:19:00,511 INFO :
09 Dec 2021 15:19:00,511 INFO : Finishing up experiment copy.
09 Dec 2021 15:19:00,512 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
09 Dec 2021 15:19:00,514 INFO : Assigning a DOI.
09 Dec 2021 15:19:01,266 INFO : Assigned DOI: 10.6069/zgsp-b024
09 Dec 2021 15:19:01,270 INFO : Updating access URL to point to the new copy of the data.
09 Dec 2021 15:19:01,279 INFO : Setting the 'copied' timestamp and journalExperimentId on the JournalExperiment table.
09 Dec 2021 15:19:01,280 INFO : Removing copy permissions given to journal.
09 Dec 2021 15:19:01,295 INFO : Adding read permissions to all users that are folder admins in the source container.
09 Dec 2021 15:19:01,302 INFO : Setting the TargetedMS folder type to 'Experimental Data'
09 Dec 2021 15:19:01,308 INFO : Updating the 'Raw Data' tab configuration
09 Dec 2021 15:19:01,312 INFO : Updating dataFileUrls for run PO4_preservation_in_PDX_tumors_IMAC_MRM_2021-12-09_12-37-18.sky.zip; targetedms run ID 126861
09 Dec 2021 15:19:01,313 INFO : Updating dataFileUrl...
09 Dec 2021 15:19:01,313 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20PO4_preservation_in_PDX_tumors_MRM_6a04c088-3b73-103a-8339-fea6ddf5e014/_temp__2021-12-09_15-16-04/export/xar/experiments_and_runs.xar.exploded/Run123693/PO4_preservation_in_PDX_tumors_IMAC_MRM_2021-12-09_12-37-18.sky.zip
09 Dec 2021 15:19:01,313 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Paulovich%20-%20PO4_preservation_in_PDX_tumors_MRM/@files/PO4_preservation_in_PDX_tumors_IMAC_MRM_2021-12-09_12-37-18.sky.zip
09 Dec 2021 15:19:01,316 INFO : Updating dataFileUrl...
09 Dec 2021 15:19:01,316 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20PO4_preservation_in_PDX_tumors_MRM_6a04c088-3b73-103a-8339-fea6ddf5e014/_temp__2021-12-09_15-16-04/export/xar/experiments_and_runs.xar.exploded/Run123693/PO4_preservation_in_PDX_tumors_IMAC_MRM_2021-12-09_12-37-18/PO4_preservation_in_PDX_tumors_IMAC_MRM.skyd
09 Dec 2021 15:19:01,316 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Paulovich%20-%20PO4_preservation_in_PDX_tumors_MRM/@files/PO4_preservation_in_PDX_tumors_IMAC_MRM_2021-12-09_12-37-18/PO4_preservation_in_PDX_tumors_IMAC_MRM.skyd
09 Dec 2021 15:19:01,319 INFO : Updating dataFileUrls for run PO4_preservation_in_PDX_tumors_Immuno_1_MRM_2021-12-09_12-48-23.sky.zip; targetedms run ID 126862
09 Dec 2021 15:19:01,321 INFO : Updating dataFileUrl...
09 Dec 2021 15:19:01,321 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20PO4_preservation_in_PDX_tumors_MRM_6a04c088-3b73-103a-8339-fea6ddf5e014/_temp__2021-12-09_15-16-04/export/xar/experiments_and_runs.xar.exploded/Run123695/PO4_preservation_in_PDX_tumors_Immuno_1_MRM_2021-12-09_12-48-23/PO4_preservation_in_PDX_tumors_Immuno_1_MRM.skyd
09 Dec 2021 15:19:01,321 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Paulovich%20-%20PO4_preservation_in_PDX_tumors_MRM/@files/PO4_preservation_in_PDX_tumors_Immuno_1_MRM_2021-12-09_12-48-23/PO4_preservation_in_PDX_tumors_Immuno_1_MRM.skyd
09 Dec 2021 15:19:01,323 INFO : Updating dataFileUrl...
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09 Dec 2021 15:19:01,325 INFO : Updating dataFileUrls for run PO4_preservation_in_PDX_tumors_Immuno_2_MRM_2021-12-09_12-46-38.sky.zip; targetedms run ID 126863
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09 Dec 2021 15:19:01,329 INFO : Updating dataFileUrl...
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09 Dec 2021 15:19:01,331 INFO : Creating a reviewer account.
09 Dec 2021 15:19:01,551 INFO : Created reviewer with email: User panorama+reviewer85@proteinms.net
09 Dec 2021 15:19:01,558 INFO : Hiding the Data Pipeline tab.
09 Dec 2021 15:19:01,722 INFO : Emailing submitter.
09 Dec 2021 15:19:01,843 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'