19 Jul 2021 08:30:49,696 INFO : Copying experiment "DDR2 pharmacodynamic profiling" from folder /Paulovich/Published_datasets/DDR2_cell_treatment_dataset to /Panorama Public/2021/Paulovich - DDR2_cell_treatment_dataset

19 Jul 2021 08:30:49,696 INFO : =======================================

19 Jul 2021 08:30:49,971 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'

19 Jul 2021 08:30:49,971 INFO : 

19 Jul 2021 08:30:49,971 INFO : Exporting experiment.

19 Jul 2021 08:32:21,148 INFO : 

19 Jul 2021 08:32:21,148 INFO : Experiment export completed successfully.

19 Jul 2021 08:32:21,148 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'

19 Jul 2021 08:32:21,233 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'

19 Jul 2021 08:32:21,233 INFO : 

19 Jul 2021 08:32:21,234 INFO : Importing experiment.

19 Jul 2021 08:32:21,239 INFO : Loading folder properties (folder type, settings and active modules)

19 Jul 2021 08:32:21,331 INFO : Done importing folder properties (folder type, settings and active modules)

19 Jul 2021 08:32:21,337 INFO : Loading queries

19 Jul 2021 08:32:21,361 INFO : 6 queries imported

19 Jul 2021 08:32:21,361 INFO : Done importing queries

19 Jul 2021 08:32:21,365 INFO : Loading grid views

19 Jul 2021 08:32:21,372 INFO : 2 custom views imported

19 Jul 2021 08:32:21,372 INFO : Done importing grid views

19 Jul 2021 08:32:21,375 INFO : Loading etl definitions

19 Jul 2021 08:32:21,377 INFO : Loading wikis

19 Jul 2021 08:32:21,386 INFO : 1 wiki imported

19 Jul 2021 08:32:21,387 INFO : Done importing wikis

19 Jul 2021 08:32:21,387 INFO : Starting to copy files

19 Jul 2021 08:33:23,287 INFO : Copied 101 files

19 Jul 2021 08:33:23,287 INFO : Ensuring exp.data rows exist for imported files

19 Jul 2021 08:33:23,825 INFO : Starting Sample Type and Data Class import

19 Jul 2021 08:33:23,827 INFO : No types XAR file to process.

19 Jul 2021 08:33:23,827 INFO : Finished importing Sample Types and Data Classes

19 Jul 2021 08:33:23,830 INFO : Loading xar

19 Jul 2021 08:33:26,041 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8876:TargetedMS.ImportSkyZip'

19 Jul 2021 08:33:26,043 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8876:TargetedMS.ImportSkyZip.Core'

19 Jul 2021 08:33:26,045 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8876:TargetedMS.ImportSkyZip.Output'

19 Jul 2021 08:33:26,045 DEBUG: Protocol import complete

19 Jul 2021 08:33:26,047 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-8876:DDR2+pharmacodynamic+profiling'

19 Jul 2021 08:33:26,047 DEBUG: Experiment/Run group import complete

19 Jul 2021 08:33:26,056 DEBUG: Protocol action set import complete

19 Jul 2021 08:33:26,081 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8876:TargetedMS.ImportSkyZip'

19 Jul 2021 08:33:26,089 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8876:3fb9cd74-c894-1039-b76f-fea6ddf5767a'

19 Jul 2021 08:33:26,093 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8876:3fb9cd09-c894-1039-b76f-fea6ddf5767a'

19 Jul 2021 08:33:26,093 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8876:TargetedMS.ImportSkyZip.Core'

19 Jul 2021 08:33:26,096 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8876:TargetedMS.ImportSkyZip.Output'

19 Jul 2021 08:33:26,097 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8876:3fb9ce29-c894-1039-b76f-fea6ddf5767a'

19 Jul 2021 08:33:26,115 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8876:TargetedMS.ImportSkyZip'

19 Jul 2021 08:33:26,120 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8876:3fb9d012-c894-1039-b76f-fea6ddf5767a'

19 Jul 2021 08:33:26,124 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8876:3fb9cd4d-c894-1039-b76f-fea6ddf5767a'

19 Jul 2021 08:33:26,124 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8876:TargetedMS.ImportSkyZip.Core'

19 Jul 2021 08:33:26,126 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8876:TargetedMS.ImportSkyZip.Output'

19 Jul 2021 08:33:26,127 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8876:3fb9d11b-c894-1039-b76f-fea6ddf5767a'

19 Jul 2021 08:33:26,137 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8876:TargetedMS.ImportSkyZip'

19 Jul 2021 08:33:26,142 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8876:3fb9d174-c894-1039-b76f-fea6ddf5767a'

19 Jul 2021 08:33:26,146 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8876:3fb9d021-c894-1039-b76f-fea6ddf5767a'

19 Jul 2021 08:33:26,146 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8876:TargetedMS.ImportSkyZip.Core'

19 Jul 2021 08:33:26,148 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8876:TargetedMS.ImportSkyZip.Output'

19 Jul 2021 08:33:26,148 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8876:3fb9d214-c894-1039-b76f-fea6ddf5767a'

19 Jul 2021 08:33:26,163 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8876:TargetedMS.ImportSkyZip'

19 Jul 2021 08:33:26,167 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8876:3fb9d273-c894-1039-b76f-fea6ddf5767a'

19 Jul 2021 08:33:26,171 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8876:3fb9d0b1-c894-1039-b76f-fea6ddf5767a'

19 Jul 2021 08:33:26,171 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8876:TargetedMS.ImportSkyZip.Core'

19 Jul 2021 08:33:26,173 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8876:TargetedMS.ImportSkyZip.Output'

19 Jul 2021 08:33:26,174 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8876:3fb9d443-c894-1039-b76f-fea6ddf5767a'

19 Jul 2021 08:33:26,176 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20DDR2_cell_treatment_dataset_69a4302e-cad3-1039-b76f-fea6ddf5767a/_temp__2021-07-19_08-30-49/export/xar/experiments_and_runs.xar.exploded/Run113752/DDRpanel2_LCL_dose_2021-07-16_11-50-14/DDRpanel2_LCL_dose.skyd into the system

19 Jul 2021 08:33:26,177 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20DDR2_cell_treatment_dataset_69a4302e-cad3-1039-b76f-fea6ddf5767a/_temp__2021-07-19_08-30-49/export/xar/experiments_and_runs.xar.exploded/Run113752/DDRpanel2_LCL_dose_2021-07-16_11-50-14/DDRpanel2_LCL_dose.skyd into the system

19 Jul 2021 08:33:26,177 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20DDR2_cell_treatment_dataset_69a4302e-cad3-1039-b76f-fea6ddf5767a/_temp__2021-07-19_08-30-49/export/xar/experiments_and_runs.xar.exploded/Run113752/DDRpanel2_LCL_dose_2021-07-16_11-50-14.sky.zip into the system

19 Jul 2021 08:33:26,179 INFO : Starting import from DDRpanel2_LCL_dose_2021-07-16_11-50-14.sky.zip

19 Jul 2021 08:33:26,184 INFO : Starting to import Skyline document from DDRpanel2_LCL_dose_2021-07-16_11-50-14.sky.zip

19 Jul 2021 08:33:26,186 INFO : Expanding NCI56_CE_optim_Skyline_library_05312016.optdb

19 Jul 2021 08:33:26,187 INFO : Expanding Cons_all_FHCRC_Broad_Q3.sptxt

19 Jul 2021 08:33:28,826 INFO : Expanding RAS_Precision_mAbs_Nonphospho_peps.blib

19 Jul 2021 08:33:28,839 INFO : Expanding DDRpanel2_LCL_dose.skyd

19 Jul 2021 08:33:28,865 INFO : Expanding DDRpanel2_LCL_dose.sky.view

19 Jul 2021 08:33:28,866 INFO : Expanding DDRpanel2_LCL_dose.sky

19 Jul 2021 08:33:28,881 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.2

19 Jul 2021 08:33:29,007 DEBUG: Starting to load chromatogram headers

19 Jul 2021 08:33:29,011 DEBUG: Done loading chromatogram headers

19 Jul 2021 08:33:29,089 INFO : Inserting sp|O14757|CHK1_HUMAN

19 Jul 2021 08:33:29,111 INFO : 2% Done

19 Jul 2021 08:33:29,239 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:33:29,246 INFO : Inserting sp|O43561|LAT_HUMAN

19 Jul 2021 08:33:29,259 INFO : 3% Done

19 Jul 2021 08:33:29,345 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:33:29,351 INFO : Inserting sp|O75417|DPOLQ_HUMAN

19 Jul 2021 08:33:29,366 INFO : 4% Done

19 Jul 2021 08:33:29,453 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:33:29,458 INFO : Inserting sp|O96013|PAK4_HUMAN

19 Jul 2021 08:33:29,469 INFO : 6% Done

19 Jul 2021 08:33:29,560 INFO : 7% Done

19 Jul 2021 08:33:29,648 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:29,653 INFO : Inserting sp|O96017|CHK2_HUMAN

19 Jul 2021 08:33:29,662 INFO : 9% Done

19 Jul 2021 08:33:29,746 INFO : 10% Done

19 Jul 2021 08:33:29,830 INFO : 12% Done

19 Jul 2021 08:33:29,939 DEBUG: Total peptides inserted: 3

19 Jul 2021 08:33:29,941 INFO : Inserting sp|P04406|G3P_HUMAN

19 Jul 2021 08:33:29,949 INFO : 14% Done

19 Jul 2021 08:33:30,025 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:33:30,029 INFO : Inserting sp|P04637|P53_HUMAN

19 Jul 2021 08:33:30,039 INFO : 15% Done

19 Jul 2021 08:33:30,139 INFO : 16% Done

19 Jul 2021 08:33:30,199 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:30,203 INFO : Inserting sp|P06493|CDK1_HUMAN

19 Jul 2021 08:33:30,211 INFO : 18% Done

19 Jul 2021 08:33:30,357 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:30,362 INFO : Inserting sp|P07437|TBB5_HUMAN

19 Jul 2021 08:33:30,370 INFO : 20% Done

19 Jul 2021 08:33:30,430 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:33:30,435 INFO : Inserting sp|P09874|PARP1_HUMAN

19 Jul 2021 08:33:30,446 INFO : 21% Done

19 Jul 2021 08:33:30,514 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:33:30,517 INFO : Inserting sp|P20700|LMNB1_HUMAN

19 Jul 2021 08:33:30,524 INFO : 22% Done

19 Jul 2021 08:33:30,602 INFO : 24% Done

19 Jul 2021 08:33:30,693 INFO : 26% Done

19 Jul 2021 08:33:30,781 INFO : 27% Done

19 Jul 2021 08:33:30,849 DEBUG: Total peptides inserted: 4

19 Jul 2021 08:33:30,853 INFO : Inserting sp|P30305|MPIP2_HUMAN

19 Jul 2021 08:33:30,860 INFO : 28% Done

19 Jul 2021 08:33:30,934 INFO : 30% Done

19 Jul 2021 08:33:31,006 INFO : 31% Done

19 Jul 2021 08:33:31,075 DEBUG: Total peptides inserted: 3

19 Jul 2021 08:33:31,078 INFO : Inserting sp|P30307|MPIP3_HUMAN

19 Jul 2021 08:33:31,086 INFO : 32% Done

19 Jul 2021 08:33:31,162 INFO : 34% Done

19 Jul 2021 08:33:31,225 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:31,231 INFO : Inserting sp|P42574|CASP3_HUMAN

19 Jul 2021 08:33:31,239 INFO : 35% Done

19 Jul 2021 08:33:31,307 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:33:31,315 INFO : Inserting sp|P46013|KI67_HUMAN

19 Jul 2021 08:33:31,323 INFO : 36% Done

19 Jul 2021 08:33:31,399 INFO : 38% Done

19 Jul 2021 08:33:31,483 INFO : 39% Done

19 Jul 2021 08:33:31,560 DEBUG: Total peptides inserted: 3

19 Jul 2021 08:33:31,564 INFO : Inserting sp|P49959|MRE11_HUMAN

19 Jul 2021 08:33:31,571 INFO : 41% Done

19 Jul 2021 08:33:31,643 INFO : 42% Done

19 Jul 2021 08:33:31,702 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:31,705 INFO : Inserting sp|P50613|CDK7_HUMAN

19 Jul 2021 08:33:31,713 INFO : 43% Done

19 Jul 2021 08:33:31,780 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:33:31,783 INFO : Inserting sp|P68133|ACTS_HUMAN

19 Jul 2021 08:33:31,790 INFO : 44% Done

19 Jul 2021 08:33:31,842 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:33:31,845 INFO : Inserting sp|Q00987|MDM2_HUMAN

19 Jul 2021 08:33:31,852 INFO : 46% Done

19 Jul 2021 08:33:31,923 INFO : 47% Done

19 Jul 2021 08:33:31,998 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:32,003 INFO : Inserting sp|Q02223|TNR17_HUMAN

19 Jul 2021 08:33:32,009 INFO : 48% Done

19 Jul 2021 08:33:32,077 INFO : 50% Done

19 Jul 2021 08:33:32,143 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:32,151 INFO : Inserting sp|Q12888|TP53B_HUMAN

19 Jul 2021 08:33:32,220 INFO : 52% Done

19 Jul 2021 08:33:32,299 INFO : 54% Done

19 Jul 2021 08:33:32,380 INFO : 55% Done

19 Jul 2021 08:33:32,442 DEBUG: Total peptides inserted: 4

19 Jul 2021 08:33:32,445 INFO : Inserting sp|Q14566|MCM6_HUMAN

19 Jul 2021 08:33:32,452 INFO : 56% Done

19 Jul 2021 08:33:32,525 INFO : 58% Done

19 Jul 2021 08:33:32,600 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:32,605 INFO : Inserting sp|Q14980|NUMA1_HUMAN

19 Jul 2021 08:33:32,612 INFO : 59% Done

19 Jul 2021 08:33:32,681 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:33:32,684 INFO : Inserting sp|Q53HL2|BOREA_HUMAN

19 Jul 2021 08:33:32,690 INFO : 60% Done

19 Jul 2021 08:33:32,757 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:33:32,762 INFO : Inserting sp|Q6IBW4|CNDH2_HUMAN

19 Jul 2021 08:33:32,769 INFO : 62% Done

19 Jul 2021 08:33:32,837 INFO : 63% Done

19 Jul 2021 08:33:32,904 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:32,907 INFO : Inserting sp|Q8NG31|CASC5_HUMAN

19 Jul 2021 08:33:32,914 INFO : 64% Done

19 Jul 2021 08:33:32,986 INFO : 66% Done

19 Jul 2021 08:33:33,053 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:33,056 INFO : Inserting sp|Q92541|RTF1_HUMAN

19 Jul 2021 08:33:33,063 INFO : 67% Done

19 Jul 2021 08:33:33,133 INFO : 68% Done

19 Jul 2021 08:33:33,199 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:33,204 INFO : Inserting sp|Q92878|RAD50_HUMAN

19 Jul 2021 08:33:33,211 INFO : 70% Done

19 Jul 2021 08:33:33,277 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:33:33,280 INFO : Inserting sp|Q96ER3|SAAL1_HUMAN

19 Jul 2021 08:33:33,286 INFO : 71% Done

19 Jul 2021 08:33:33,358 INFO : 72% Done

19 Jul 2021 08:33:33,423 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:33,427 INFO : Inserting sp|Q99638|RAD9A_HUMAN

19 Jul 2021 08:33:33,433 INFO : 74% Done

19 Jul 2021 08:33:33,561 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:33,564 INFO : Inserting sp|Q9BVJ6|UT14A_HUMAN

19 Jul 2021 08:33:33,571 INFO : 76% Done

19 Jul 2021 08:33:33,648 INFO : 78% Done

19 Jul 2021 08:33:33,716 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:33,719 INFO : Inserting sp|Q9H400|LIME1_HUMAN

19 Jul 2021 08:33:33,781 INFO : 80% Done

19 Jul 2021 08:33:33,838 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:33,839 INFO : Done parsing Skyline document.

19 Jul 2021 08:33:33,842 INFO : No group comparisons found.

19 Jul 2021 08:33:33,842 INFO : Calculating calibration curves

19 Jul 2021 08:33:33,843 DEBUG: Calculating calibration curve for sp|O14757|CHK1_HUMAN, 1 of 32

19 Jul 2021 08:33:33,846 INFO : 98% Done

19 Jul 2021 08:33:33,846 INFO : No calibration curves found.

19 Jul 2021 08:33:33,847 INFO : Creating and populating temp tables for Proportion values

19 Jul 2021 08:33:33,866 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

19 Jul 2021 08:33:33,943 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

19 Jul 2021 08:33:33,971 INFO : Cleaning up temp tables

19 Jul 2021 08:33:34,206 INFO : Completed import of Skyline document from DDRpanel2_LCL_dose_2021-07-16_11-50-14.sky.zip

19 Jul 2021 08:33:34,210 INFO : 100% Done

19 Jul 2021 08:33:34,214 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20DDR2_cell_treatment_dataset_69a4302e-cad3-1039-b76f-fea6ddf5767a/_temp__2021-07-19_08-30-49/export/xar/experiments_and_runs.xar.exploded/Run113752/DDRpanel2_LCL_dose_2021-07-16_11-50-14.sky.zip into the system

19 Jul 2021 08:33:34,215 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20DDR2_cell_treatment_dataset_69a4302e-cad3-1039-b76f-fea6ddf5767a/_temp__2021-07-19_08-30-49/export/xar/experiments_and_runs.xar.exploded/Run113753/DDRpanel1_PBMC_2021-07-16_11-50-24/DDRpanel1_PBMC.skyd into the system

19 Jul 2021 08:33:34,215 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20DDR2_cell_treatment_dataset_69a4302e-cad3-1039-b76f-fea6ddf5767a/_temp__2021-07-19_08-30-49/export/xar/experiments_and_runs.xar.exploded/Run113753/DDRpanel1_PBMC_2021-07-16_11-50-24/DDRpanel1_PBMC.skyd into the system

19 Jul 2021 08:33:34,216 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20DDR2_cell_treatment_dataset_69a4302e-cad3-1039-b76f-fea6ddf5767a/_temp__2021-07-19_08-30-49/export/xar/experiments_and_runs.xar.exploded/Run113753/DDRpanel1_PBMC_2021-07-16_11-50-24.sky.zip into the system

19 Jul 2021 08:33:34,218 INFO : Starting import from DDRpanel1_PBMC_2021-07-16_11-50-24.sky.zip

19 Jul 2021 08:33:34,222 INFO : Starting to import Skyline document from DDRpanel1_PBMC_2021-07-16_11-50-24.sky.zip

19 Jul 2021 08:33:34,224 INFO : Expanding Cons_all_FHCRC_Broad_Q3.sptxt

19 Jul 2021 08:33:36,783 INFO : Expanding RAS_Precision_mAbs_Nonphospho_peps.blib

19 Jul 2021 08:33:36,798 INFO : Expanding DDRpanel1_PBMC.skyd

19 Jul 2021 08:33:36,853 INFO : Expanding DDRpanel1_PBMC.sky.view

19 Jul 2021 08:33:36,854 INFO : Expanding DDRpanel1_PBMC.sky

19 Jul 2021 08:33:36,874 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.2

19 Jul 2021 08:33:37,004 DEBUG: Starting to load chromatogram headers

19 Jul 2021 08:33:37,009 DEBUG: Done loading chromatogram headers

19 Jul 2021 08:33:37,068 INFO : Inserting sp|O00762|UBE2C_HUMAN

19 Jul 2021 08:33:37,075 INFO : 2% Done

19 Jul 2021 08:33:37,191 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:37,195 INFO : Inserting sp|O14757|CHK1_HUMAN

19 Jul 2021 08:33:37,201 INFO : 3% Done

19 Jul 2021 08:33:37,266 INFO : 4% Done

19 Jul 2021 08:33:37,337 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:37,341 INFO : Inserting sp|O15360|FANCA_HUMAN

19 Jul 2021 08:33:37,348 INFO : 6% Done

19 Jul 2021 08:33:37,429 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:33:37,432 INFO : Inserting sp|O43502|RA51C_HUMAN

19 Jul 2021 08:33:37,506 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:33:37,509 INFO : Inserting sp|O60673|DPOLZ_HUMAN

19 Jul 2021 08:33:37,513 INFO : 7% Done

19 Jul 2021 08:33:37,565 INFO : 9% Done

19 Jul 2021 08:33:37,648 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:37,654 INFO : Inserting sp|O60934|NBN_HUMAN

19 Jul 2021 08:33:37,660 INFO : 10% Done

19 Jul 2021 08:33:37,725 INFO : 11% Done

19 Jul 2021 08:33:37,799 INFO : 12% Done

19 Jul 2021 08:33:37,862 INFO : 13% Done

19 Jul 2021 08:33:37,932 DEBUG: Total peptides inserted: 4

19 Jul 2021 08:33:37,934 INFO : Inserting sp|P04406|G3P_HUMAN

19 Jul 2021 08:33:37,939 INFO : 14% Done

19 Jul 2021 08:33:37,999 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:33:38,001 INFO : Inserting sp|P05412|JUN_HUMAN

19 Jul 2021 08:33:38,006 INFO : 15% Done

19 Jul 2021 08:33:38,071 INFO : 16% Done

19 Jul 2021 08:33:38,144 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:38,148 INFO : Inserting sp|P06400|RB_HUMAN

19 Jul 2021 08:33:38,155 INFO : 17% Done

19 Jul 2021 08:33:38,222 INFO : 18% Done

19 Jul 2021 08:33:38,303 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:38,307 INFO : Inserting sp|P09211|GSTP1_HUMAN

19 Jul 2021 08:33:38,314 INFO : 19% Done

19 Jul 2021 08:33:38,375 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:33:38,378 INFO : Inserting sp|P09874|PARP1_HUMAN

19 Jul 2021 08:33:38,385 INFO : 21% Done

19 Jul 2021 08:33:38,472 INFO : 22% Done

19 Jul 2021 08:33:38,543 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:38,546 INFO : Inserting sp|P10909|CLUS_HUMAN

19 Jul 2021 08:33:38,552 INFO : 23% Done

19 Jul 2021 08:33:38,622 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:33:38,626 INFO : Inserting sp|P12004|PCNA_HUMAN

19 Jul 2021 08:33:38,668 INFO : 24% Done

19 Jul 2021 08:33:38,837 INFO : 25% Done

19 Jul 2021 08:33:39,145 INFO : 26% Done

19 Jul 2021 08:33:39,240 DEBUG: Total peptides inserted: 3

19 Jul 2021 08:33:39,243 INFO : Inserting sp|P16104|H2AX_HUMAN

19 Jul 2021 08:33:39,249 INFO : 27% Done

19 Jul 2021 08:33:39,321 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:33:39,324 INFO : Inserting sp|P31350|RIR2_HUMAN

19 Jul 2021 08:33:39,331 INFO : 29% Done

19 Jul 2021 08:33:39,407 INFO : 30% Done

19 Jul 2021 08:33:39,468 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:39,473 INFO : Inserting sp|P38398|BRCA1_HUMAN

19 Jul 2021 08:33:39,546 INFO : 32% Done

19 Jul 2021 08:33:39,619 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:39,624 INFO : Inserting sp|P39748|FEN1_HUMAN

19 Jul 2021 08:33:39,630 INFO : 33% Done

19 Jul 2021 08:33:39,690 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:33:39,693 INFO : Inserting sp|P51587|BRCA2_HUMAN

19 Jul 2021 08:33:39,700 INFO : 34% Done

19 Jul 2021 08:33:39,776 INFO : 35% Done

19 Jul 2021 08:33:39,835 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:39,838 INFO : Inserting sp|P54727|RD23B_HUMAN

19 Jul 2021 08:33:39,844 INFO : 36% Done

19 Jul 2021 08:33:39,911 INFO : 38% Done

19 Jul 2021 08:33:40,008 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:40,012 INFO : Inserting sp|P63279|UBC9_HUMAN

19 Jul 2021 08:33:40,076 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:33:40,079 INFO : Inserting sp|Q0VG06|FP100_HUMAN

19 Jul 2021 08:33:40,086 INFO : 39% Done

19 Jul 2021 08:33:40,153 INFO : 40% Done

19 Jul 2021 08:33:40,203 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:40,208 INFO : Inserting sp|Q13315|ATM_HUMAN

19 Jul 2021 08:33:40,217 INFO : 42% Done

19 Jul 2021 08:33:40,337 INFO : 43% Done

19 Jul 2021 08:33:40,449 INFO : 45% Done

19 Jul 2021 08:33:40,560 INFO : 46% Done

19 Jul 2021 08:33:40,636 DEBUG: Total peptides inserted: 4

19 Jul 2021 08:33:40,640 INFO : Inserting sp|Q13535|ATR_HUMAN

19 Jul 2021 08:33:40,647 INFO : 47% Done

19 Jul 2021 08:33:40,726 INFO : 49% Done

19 Jul 2021 08:33:40,797 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:40,799 INFO : Inserting sp|Q14676|MDC1_HUMAN

19 Jul 2021 08:33:40,805 INFO : 50% Done

19 Jul 2021 08:33:40,925 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:40,928 INFO : Inserting sp|Q15554|TERF2_HUMAN

19 Jul 2021 08:33:40,933 INFO : 51% Done

19 Jul 2021 08:33:40,991 INFO : 52% Done

19 Jul 2021 08:33:41,061 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:41,063 INFO : 53% Done

19 Jul 2021 08:33:41,067 INFO : Inserting sp|Q5UIP0|RIF1_HUMAN

19 Jul 2021 08:33:41,073 INFO : 54% Done

19 Jul 2021 08:33:41,145 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:33:41,149 INFO : Inserting sp|Q86YC2|PALB2_HUMAN

19 Jul 2021 08:33:41,160 INFO : 55% Done

19 Jul 2021 08:33:41,269 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:33:41,272 INFO : Inserting sp|Q8WXE1|ATRIP_HUMAN

19 Jul 2021 08:33:41,280 INFO : 57% Done

19 Jul 2021 08:33:41,370 INFO : 58% Done

19 Jul 2021 08:33:41,451 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:41,454 INFO : Inserting sp|Q92547|TOPB1_HUMAN

19 Jul 2021 08:33:41,463 INFO : 60% Done

19 Jul 2021 08:33:41,570 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:33:41,573 INFO : Inserting sp|Q92547|TOPB1_HUMAN

19 Jul 2021 08:33:41,579 INFO : 61% Done

19 Jul 2021 08:33:41,647 INFO : 62% Done

19 Jul 2021 08:33:41,742 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:41,745 INFO : Inserting sp|Q92878|RAD50_HUMAN

19 Jul 2021 08:33:41,751 INFO : 64% Done

19 Jul 2021 08:33:41,830 INFO : 65% Done

19 Jul 2021 08:33:41,893 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:41,896 INFO : Inserting sp|Q9BX63|FANCJ_HUMAN

19 Jul 2021 08:33:41,900 INFO : 66% Done

19 Jul 2021 08:33:41,960 INFO : 67% Done

19 Jul 2021 08:33:42,067 INFO : 68% Done

19 Jul 2021 08:33:42,136 INFO : 69% Done

19 Jul 2021 08:33:42,218 INFO : 70% Done

19 Jul 2021 08:33:42,283 DEBUG: Total peptides inserted: 5

19 Jul 2021 08:33:42,288 INFO : Inserting sp|Q9BXW9|FACD2_HUMAN

19 Jul 2021 08:33:42,294 INFO : 71% Done

19 Jul 2021 08:33:42,367 INFO : 72% Done

19 Jul 2021 08:33:42,438 INFO : 73% Done

19 Jul 2021 08:33:42,498 DEBUG: Total peptides inserted: 3

19 Jul 2021 08:33:42,502 INFO : Inserting sp|Q9NPD8|UBE2T_HUMAN

19 Jul 2021 08:33:42,508 INFO : 74% Done

19 Jul 2021 08:33:42,588 INFO : 75% Done

19 Jul 2021 08:33:42,649 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:42,652 INFO : Inserting sp|Q9NS91|RAD18_HUMAN

19 Jul 2021 08:33:42,660 INFO : 76% Done

19 Jul 2021 08:33:42,740 INFO : 78% Done

19 Jul 2021 08:33:42,814 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:42,816 INFO : Inserting sp|Q9NS91|RAD18_HUMAN

19 Jul 2021 08:33:42,911 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:33:42,915 INFO : Inserting sp|Q9NVI1|FANCI_HUMAN

19 Jul 2021 08:33:42,924 INFO : 80% Done

19 Jul 2021 08:33:43,015 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:33:43,015 INFO : Done parsing Skyline document.

19 Jul 2021 08:33:43,019 INFO : No group comparisons found.

19 Jul 2021 08:33:43,019 INFO : Calculating calibration curves

19 Jul 2021 08:33:43,021 DEBUG: Calculating calibration curve for sp|O00762|UBE2C_HUMAN, 1 of 37

19 Jul 2021 08:33:43,063 INFO : 81% Done

19 Jul 2021 08:33:43,063 DEBUG: Calculating calibration curve for sp|O14757|CHK1_HUMAN, 2 of 37

19 Jul 2021 08:33:43,108 DEBUG: Calculating calibration curve for sp|O15360|FANCA_HUMAN, 3 of 37

19 Jul 2021 08:33:43,141 DEBUG: Calculating calibration curve for sp|O43502|RA51C_HUMAN, 4 of 37

19 Jul 2021 08:33:43,170 INFO : 82% Done

19 Jul 2021 08:33:43,170 DEBUG: Calculating calibration curve for sp|O60673|DPOLZ_HUMAN, 5 of 37

19 Jul 2021 08:33:43,215 INFO : 83% Done

19 Jul 2021 08:33:43,215 DEBUG: Calculating calibration curve for sp|O60934|NBN_HUMAN, 6 of 37

19 Jul 2021 08:33:43,308 DEBUG: Calculating calibration curve for sp|P04406|G3P_HUMAN, 7 of 37

19 Jul 2021 08:33:43,329 DEBUG: Calculating calibration curve for sp|P05412|JUN_HUMAN, 8 of 37

19 Jul 2021 08:33:43,375 INFO : 84% Done

19 Jul 2021 08:33:43,375 DEBUG: Calculating calibration curve for sp|P06400|RB_HUMAN, 9 of 37

19 Jul 2021 08:33:43,427 DEBUG: Calculating calibration curve for sp|P09211|GSTP1_HUMAN, 10 of 37

19 Jul 2021 08:33:43,451 INFO : 85% Done

19 Jul 2021 08:33:43,451 DEBUG: Calculating calibration curve for sp|P09874|PARP1_HUMAN, 11 of 37

19 Jul 2021 08:33:43,506 DEBUG: Calculating calibration curve for sp|P10909|CLUS_HUMAN, 12 of 37

19 Jul 2021 08:33:43,534 INFO : 86% Done

19 Jul 2021 08:33:43,534 DEBUG: Calculating calibration curve for sp|P12004|PCNA_HUMAN, 13 of 37

19 Jul 2021 08:33:43,608 DEBUG: Calculating calibration curve for sp|P16104|H2AX_HUMAN, 14 of 37

19 Jul 2021 08:33:43,635 INFO : 87% Done

19 Jul 2021 08:33:43,636 DEBUG: Calculating calibration curve for sp|P31350|RIR2_HUMAN, 15 of 37

19 Jul 2021 08:33:43,686 DEBUG: Calculating calibration curve for sp|P38398|BRCA1_HUMAN, 16 of 37

19 Jul 2021 08:33:43,734 INFO : 88% Done

19 Jul 2021 08:33:43,734 DEBUG: Calculating calibration curve for sp|P39748|FEN1_HUMAN, 17 of 37

19 Jul 2021 08:33:43,755 DEBUG: Calculating calibration curve for sp|P51587|BRCA2_HUMAN, 18 of 37

19 Jul 2021 08:33:43,803 INFO : 89% Done

19 Jul 2021 08:33:43,803 DEBUG: Calculating calibration curve for sp|P54727|RD23B_HUMAN, 19 of 37

19 Jul 2021 08:33:43,850 DEBUG: Calculating calibration curve for sp|P63279|UBC9_HUMAN, 20 of 37

19 Jul 2021 08:33:43,873 INFO : 90% Done

19 Jul 2021 08:33:43,874 DEBUG: Calculating calibration curve for sp|Q0VG06|FP100_HUMAN, 21 of 37

19 Jul 2021 08:33:43,911 DEBUG: Calculating calibration curve for sp|Q13315|ATM_HUMAN, 22 of 37

19 Jul 2021 08:33:44,037 INFO : 91% Done

19 Jul 2021 08:33:44,038 DEBUG: Calculating calibration curve for sp|Q13535|ATR_HUMAN, 23 of 37

19 Jul 2021 08:33:44,084 DEBUG: Calculating calibration curve for sp|Q14676|MDC1_HUMAN, 24 of 37

19 Jul 2021 08:33:44,127 INFO : 92% Done

19 Jul 2021 08:33:44,127 DEBUG: Calculating calibration curve for sp|Q15554|TERF2_HUMAN, 25 of 37

19 Jul 2021 08:33:44,169 DEBUG: Calculating calibration curve for sp|Q5UIP0|RIF1_HUMAN, 26 of 37

19 Jul 2021 08:33:44,196 INFO : 93% Done

19 Jul 2021 08:33:44,196 DEBUG: Calculating calibration curve for sp|Q86YC2|PALB2_HUMAN, 27 of 37

19 Jul 2021 08:33:44,234 DEBUG: Calculating calibration curve for sp|Q8WXE1|ATRIP_HUMAN, 28 of 37

19 Jul 2021 08:33:44,292 INFO : 94% Done

19 Jul 2021 08:33:44,292 DEBUG: Calculating calibration curve for sp|Q92547|TOPB1_HUMAN, 29 of 37

19 Jul 2021 08:33:44,335 DEBUG: Calculating calibration curve for sp|Q92547|TOPB1_HUMAN, 30 of 37

19 Jul 2021 08:33:44,398 INFO : 95% Done

19 Jul 2021 08:33:44,399 DEBUG: Calculating calibration curve for sp|Q92878|RAD50_HUMAN, 31 of 37

19 Jul 2021 08:33:44,444 DEBUG: Calculating calibration curve for sp|Q9BX63|FANCJ_HUMAN, 32 of 37

19 Jul 2021 08:33:44,546 DEBUG: Calculating calibration curve for sp|Q9BXW9|FACD2_HUMAN, 33 of 37

19 Jul 2021 08:33:44,597 INFO : 96% Done

19 Jul 2021 08:33:44,597 DEBUG: Calculating calibration curve for sp|Q9NPD8|UBE2T_HUMAN, 34 of 37

19 Jul 2021 08:33:44,634 INFO : 97% Done

19 Jul 2021 08:33:44,635 DEBUG: Calculating calibration curve for sp|Q9NS91|RAD18_HUMAN, 35 of 37

19 Jul 2021 08:33:44,675 DEBUG: Calculating calibration curve for sp|Q9NS91|RAD18_HUMAN, 36 of 37

19 Jul 2021 08:33:44,700 DEBUG: Calculating calibration curve for sp|Q9NVI1|FANCI_HUMAN, 37 of 37

19 Jul 2021 08:33:44,726 INFO : 98% Done

19 Jul 2021 08:33:44,738 INFO : Done calculating calibration curves.

19 Jul 2021 08:33:44,739 INFO : Creating and populating temp tables for Proportion values

19 Jul 2021 08:33:44,769 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

19 Jul 2021 08:33:44,929 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

19 Jul 2021 08:33:44,986 INFO : Cleaning up temp tables

19 Jul 2021 08:33:45,249 INFO : Completed import of Skyline document from DDRpanel1_PBMC_2021-07-16_11-50-24.sky.zip

19 Jul 2021 08:33:45,253 INFO : 100% Done

19 Jul 2021 08:33:45,257 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20DDR2_cell_treatment_dataset_69a4302e-cad3-1039-b76f-fea6ddf5767a/_temp__2021-07-19_08-30-49/export/xar/experiments_and_runs.xar.exploded/Run113753/DDRpanel1_PBMC_2021-07-16_11-50-24.sky.zip into the system

19 Jul 2021 08:33:45,257 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20DDR2_cell_treatment_dataset_69a4302e-cad3-1039-b76f-fea6ddf5767a/_temp__2021-07-19_08-30-49/export/xar/experiments_and_runs.xar.exploded/Run113754/DDRpanel2_PBMC_2021-07-16_11-50-34/DDRpanel2_PBMC.skyd into the system

19 Jul 2021 08:33:45,258 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20DDR2_cell_treatment_dataset_69a4302e-cad3-1039-b76f-fea6ddf5767a/_temp__2021-07-19_08-30-49/export/xar/experiments_and_runs.xar.exploded/Run113754/DDRpanel2_PBMC_2021-07-16_11-50-34/DDRpanel2_PBMC.skyd into the system

19 Jul 2021 08:33:45,258 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20DDR2_cell_treatment_dataset_69a4302e-cad3-1039-b76f-fea6ddf5767a/_temp__2021-07-19_08-30-49/export/xar/experiments_and_runs.xar.exploded/Run113754/DDRpanel2_PBMC_2021-07-16_11-50-34.sky.zip into the system

19 Jul 2021 08:33:45,259 INFO : Starting import from DDRpanel2_PBMC_2021-07-16_11-50-34.sky.zip

19 Jul 2021 08:33:45,263 INFO : Starting to import Skyline document from DDRpanel2_PBMC_2021-07-16_11-50-34.sky.zip

19 Jul 2021 08:33:45,265 INFO : Expanding NCI56_CE_optim_Skyline_library_05312016.optdb

19 Jul 2021 08:33:45,266 INFO : Expanding Cons_all_FHCRC_Broad_Q3.sptxt

19 Jul 2021 08:33:47,913 INFO : Expanding RAS_Precision_mAbs_Nonphospho_peps.blib

19 Jul 2021 08:33:47,926 INFO : Expanding DDRpanel2_PBMC.skyd

19 Jul 2021 08:33:47,974 INFO : Expanding DDRpanel2_PBMC.sky.view

19 Jul 2021 08:33:47,975 INFO : Expanding DDRpanel2_PBMC.sky

19 Jul 2021 08:33:47,998 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.2

19 Jul 2021 08:33:48,188 DEBUG: Starting to load chromatogram headers

19 Jul 2021 08:33:48,192 DEBUG: Done loading chromatogram headers

19 Jul 2021 08:33:48,267 INFO : Inserting sp|O14757|CHK1_HUMAN

19 Jul 2021 08:33:48,277 INFO : 2% Done

19 Jul 2021 08:33:48,384 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:33:48,387 INFO : Inserting sp|O43561|LAT_HUMAN

19 Jul 2021 08:33:48,396 INFO : 3% Done

19 Jul 2021 08:33:48,499 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:33:48,501 INFO : Inserting sp|O75417|DPOLQ_HUMAN

19 Jul 2021 08:33:48,509 INFO : 4% Done

19 Jul 2021 08:33:48,609 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:33:48,611 INFO : Inserting sp|O96013|PAK4_HUMAN

19 Jul 2021 08:33:48,619 INFO : 6% Done

19 Jul 2021 08:33:48,729 INFO : 7% Done

19 Jul 2021 08:33:48,839 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:48,841 INFO : Inserting sp|O96017|CHK2_HUMAN

19 Jul 2021 08:33:48,850 INFO : 9% Done

19 Jul 2021 08:33:48,958 INFO : 10% Done

19 Jul 2021 08:33:49,071 INFO : 12% Done

19 Jul 2021 08:33:49,226 DEBUG: Total peptides inserted: 3

19 Jul 2021 08:33:49,229 INFO : Inserting sp|P04406|G3P_HUMAN

19 Jul 2021 08:33:49,237 INFO : 14% Done

19 Jul 2021 08:33:49,339 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:33:49,341 INFO : Inserting sp|P04637|P53_HUMAN

19 Jul 2021 08:33:49,352 INFO : 15% Done

19 Jul 2021 08:33:49,498 INFO : 16% Done

19 Jul 2021 08:33:49,590 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:49,593 INFO : Inserting sp|P06493|CDK1_HUMAN

19 Jul 2021 08:33:49,603 INFO : 18% Done

19 Jul 2021 08:33:49,717 INFO : 19% Done

19 Jul 2021 08:33:49,824 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:49,826 INFO : Inserting sp|P07437|TBB5_HUMAN

19 Jul 2021 08:33:49,833 INFO : 20% Done

19 Jul 2021 08:33:49,916 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:33:49,918 INFO : Inserting sp|P09874|PARP1_HUMAN

19 Jul 2021 08:33:49,927 INFO : 22% Done

19 Jul 2021 08:33:50,031 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:33:50,033 INFO : Inserting sp|P20700|LMNB1_HUMAN

19 Jul 2021 08:33:50,150 INFO : 24% Done

19 Jul 2021 08:33:50,285 INFO : 26% Done

19 Jul 2021 08:33:50,416 INFO : 27% Done

19 Jul 2021 08:33:50,509 DEBUG: Total peptides inserted: 4

19 Jul 2021 08:33:50,512 INFO : Inserting sp|P30305|MPIP2_HUMAN

19 Jul 2021 08:33:50,520 INFO : 28% Done

19 Jul 2021 08:33:50,636 INFO : 30% Done

19 Jul 2021 08:33:50,753 INFO : 31% Done

19 Jul 2021 08:33:50,859 DEBUG: Total peptides inserted: 3

19 Jul 2021 08:33:50,862 INFO : Inserting sp|P30307|MPIP3_HUMAN

19 Jul 2021 08:33:50,871 INFO : 32% Done

19 Jul 2021 08:33:50,983 INFO : 34% Done

19 Jul 2021 08:33:51,087 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:51,089 INFO : Inserting sp|P42574|CASP3_HUMAN

19 Jul 2021 08:33:51,097 INFO : 35% Done

19 Jul 2021 08:33:51,202 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:33:51,205 INFO : Inserting sp|P46013|KI67_HUMAN

19 Jul 2021 08:33:51,213 INFO : 36% Done

19 Jul 2021 08:33:51,325 INFO : 38% Done

19 Jul 2021 08:33:51,434 INFO : 39% Done

19 Jul 2021 08:33:51,537 DEBUG: Total peptides inserted: 3

19 Jul 2021 08:33:51,540 INFO : Inserting sp|P49959|MRE11_HUMAN

19 Jul 2021 08:33:51,548 INFO : 40% Done

19 Jul 2021 08:33:51,659 INFO : 42% Done

19 Jul 2021 08:33:51,755 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:51,757 INFO : Inserting sp|P50613|CDK7_HUMAN

19 Jul 2021 08:33:51,765 INFO : 43% Done

19 Jul 2021 08:33:51,865 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:33:51,868 INFO : Inserting sp|P68133|ACTS_HUMAN

19 Jul 2021 08:33:51,875 INFO : 44% Done

19 Jul 2021 08:33:51,953 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:33:51,955 INFO : Inserting sp|Q00987|MDM2_HUMAN

19 Jul 2021 08:33:51,963 INFO : 46% Done

19 Jul 2021 08:33:52,067 INFO : 47% Done

19 Jul 2021 08:33:52,178 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:52,180 INFO : Inserting sp|Q02223|TNR17_HUMAN

19 Jul 2021 08:33:52,188 INFO : 48% Done

19 Jul 2021 08:33:52,292 INFO : 50% Done

19 Jul 2021 08:33:52,399 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:52,402 INFO : Inserting sp|Q12888|TP53B_HUMAN

19 Jul 2021 08:33:52,508 INFO : 52% Done

19 Jul 2021 08:33:52,632 INFO : 54% Done

19 Jul 2021 08:33:52,751 INFO : 55% Done

19 Jul 2021 08:33:52,849 DEBUG: Total peptides inserted: 4

19 Jul 2021 08:33:52,851 INFO : Inserting sp|Q14566|MCM6_HUMAN

19 Jul 2021 08:33:52,859 INFO : 56% Done

19 Jul 2021 08:33:52,970 INFO : 58% Done

19 Jul 2021 08:33:53,083 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:53,086 INFO : Inserting sp|Q14980|NUMA1_HUMAN

19 Jul 2021 08:33:53,094 INFO : 59% Done

19 Jul 2021 08:33:53,194 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:33:53,196 INFO : Inserting sp|Q53HL2|BOREA_HUMAN

19 Jul 2021 08:33:53,206 INFO : 60% Done

19 Jul 2021 08:33:53,306 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:33:53,308 INFO : 61% Done

19 Jul 2021 08:33:53,310 INFO : Inserting sp|Q6IBW4|CNDH2_HUMAN

19 Jul 2021 08:33:53,317 INFO : 62% Done

19 Jul 2021 08:33:53,421 INFO : 63% Done

19 Jul 2021 08:33:53,523 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:53,525 INFO : Inserting sp|Q8NG31|CASC5_HUMAN

19 Jul 2021 08:33:53,533 INFO : 65% Done

19 Jul 2021 08:33:53,642 INFO : 66% Done

19 Jul 2021 08:33:53,742 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:53,744 INFO : Inserting sp|Q92541|RTF1_HUMAN

19 Jul 2021 08:33:53,752 INFO : 67% Done

19 Jul 2021 08:33:53,866 INFO : 68% Done

19 Jul 2021 08:33:53,972 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:53,975 INFO : Inserting sp|Q92878|RAD50_HUMAN

19 Jul 2021 08:33:53,983 INFO : 70% Done

19 Jul 2021 08:33:54,077 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:33:54,079 INFO : Inserting sp|Q96ER3|SAAL1_HUMAN

19 Jul 2021 08:33:54,087 INFO : 71% Done

19 Jul 2021 08:33:54,199 INFO : 72% Done

19 Jul 2021 08:33:54,300 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:54,302 INFO : Inserting sp|Q99638|RAD9A_HUMAN

19 Jul 2021 08:33:54,308 INFO : 74% Done

19 Jul 2021 08:33:54,503 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:54,506 INFO : Inserting sp|Q9BVJ6|UT14A_HUMAN

19 Jul 2021 08:33:54,514 INFO : 76% Done

19 Jul 2021 08:33:54,627 INFO : 78% Done

19 Jul 2021 08:33:54,726 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:54,729 INFO : Inserting sp|Q9H400|LIME1_HUMAN

19 Jul 2021 08:33:54,833 INFO : 80% Done

19 Jul 2021 08:33:54,921 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:54,922 INFO : Done parsing Skyline document.

19 Jul 2021 08:33:54,925 INFO : No group comparisons found.

19 Jul 2021 08:33:54,925 INFO : Calculating calibration curves

19 Jul 2021 08:33:54,926 DEBUG: Calculating calibration curve for sp|O14757|CHK1_HUMAN, 1 of 32

19 Jul 2021 08:33:54,928 INFO : 98% Done

19 Jul 2021 08:33:54,928 INFO : No calibration curves found.

19 Jul 2021 08:33:54,929 INFO : Creating and populating temp tables for Proportion values

19 Jul 2021 08:33:54,955 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

19 Jul 2021 08:33:55,078 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

19 Jul 2021 08:33:55,122 INFO : Cleaning up temp tables

19 Jul 2021 08:33:55,366 INFO : Completed import of Skyline document from DDRpanel2_PBMC_2021-07-16_11-50-34.sky.zip

19 Jul 2021 08:33:55,369 INFO : 100% Done

19 Jul 2021 08:33:55,372 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20DDR2_cell_treatment_dataset_69a4302e-cad3-1039-b76f-fea6ddf5767a/_temp__2021-07-19_08-30-49/export/xar/experiments_and_runs.xar.exploded/Run113754/DDRpanel2_PBMC_2021-07-16_11-50-34.sky.zip into the system

19 Jul 2021 08:33:55,373 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20DDR2_cell_treatment_dataset_69a4302e-cad3-1039-b76f-fea6ddf5767a/_temp__2021-07-19_08-30-49/export/xar/experiments_and_runs.xar.exploded/Run113755/DDRpanel2_LCL_time_2021-07-16_11-50-45/DDRpanel2_LCL_time.skyd into the system

19 Jul 2021 08:33:55,373 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20DDR2_cell_treatment_dataset_69a4302e-cad3-1039-b76f-fea6ddf5767a/_temp__2021-07-19_08-30-49/export/xar/experiments_and_runs.xar.exploded/Run113755/DDRpanel2_LCL_time_2021-07-16_11-50-45/DDRpanel2_LCL_time.skyd into the system

19 Jul 2021 08:33:55,373 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20DDR2_cell_treatment_dataset_69a4302e-cad3-1039-b76f-fea6ddf5767a/_temp__2021-07-19_08-30-49/export/xar/experiments_and_runs.xar.exploded/Run113755/DDRpanel2_LCL_time_2021-07-16_11-50-45.sky.zip into the system

19 Jul 2021 08:33:55,375 INFO : Starting import from DDRpanel2_LCL_time_2021-07-16_11-50-45.sky.zip

19 Jul 2021 08:33:55,377 INFO : Starting to import Skyline document from DDRpanel2_LCL_time_2021-07-16_11-50-45.sky.zip

19 Jul 2021 08:33:55,380 INFO : Expanding NCI56_CE_optim_Skyline_library_05312016.optdb

19 Jul 2021 08:33:55,380 INFO : Expanding Cons_all_FHCRC_Broad_Q3.sptxt

19 Jul 2021 08:33:57,977 INFO : Expanding RAS_Precision_mAbs_Nonphospho_peps.blib

19 Jul 2021 08:33:57,990 INFO : Expanding DDRpanel2_LCL_time.skyd

19 Jul 2021 08:33:58,041 INFO : Expanding DDRpanel2_LCL_time.sky.view

19 Jul 2021 08:33:58,042 INFO : Expanding DDRpanel2_LCL_time.sky

19 Jul 2021 08:33:58,069 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.2

19 Jul 2021 08:33:58,280 DEBUG: Starting to load chromatogram headers

19 Jul 2021 08:33:58,285 DEBUG: Done loading chromatogram headers

19 Jul 2021 08:33:58,364 INFO : Inserting sp|O14757|CHK1_HUMAN

19 Jul 2021 08:33:58,375 INFO : 2% Done

19 Jul 2021 08:33:58,499 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:33:58,501 INFO : Inserting sp|O43561|LAT_HUMAN

19 Jul 2021 08:33:58,510 INFO : 3% Done

19 Jul 2021 08:33:58,628 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:33:58,630 INFO : Inserting sp|O75417|DPOLQ_HUMAN

19 Jul 2021 08:33:58,639 INFO : 4% Done

19 Jul 2021 08:33:58,756 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:33:58,758 INFO : Inserting sp|O96013|PAK4_HUMAN

19 Jul 2021 08:33:58,767 INFO : 6% Done

19 Jul 2021 08:33:58,897 INFO : 7% Done

19 Jul 2021 08:33:59,025 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:59,029 INFO : Inserting sp|O96017|CHK2_HUMAN

19 Jul 2021 08:33:59,041 INFO : 9% Done

19 Jul 2021 08:33:59,168 INFO : 10% Done

19 Jul 2021 08:33:59,306 INFO : 12% Done

19 Jul 2021 08:33:59,498 DEBUG: Total peptides inserted: 3

19 Jul 2021 08:33:59,501 INFO : Inserting sp|P04406|G3P_HUMAN

19 Jul 2021 08:33:59,512 INFO : 13% Done

19 Jul 2021 08:33:59,637 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:33:59,640 INFO : Inserting sp|P04637|P53_HUMAN

19 Jul 2021 08:33:59,655 INFO : 15% Done

19 Jul 2021 08:33:59,827 INFO : 16% Done

19 Jul 2021 08:33:59,934 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:33:59,939 INFO : Inserting sp|P06493|CDK1_HUMAN

19 Jul 2021 08:33:59,949 INFO : 18% Done

19 Jul 2021 08:34:00,197 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:34:00,199 INFO : Inserting sp|P07437|TBB5_HUMAN

19 Jul 2021 08:34:00,207 INFO : 20% Done

19 Jul 2021 08:34:00,307 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:34:00,310 INFO : Inserting sp|P09874|PARP1_HUMAN

19 Jul 2021 08:34:00,321 INFO : 21% Done

19 Jul 2021 08:34:00,448 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:34:00,450 INFO : Inserting sp|P20700|LMNB1_HUMAN

19 Jul 2021 08:34:00,461 INFO : 22% Done

19 Jul 2021 08:34:00,591 INFO : 24% Done

19 Jul 2021 08:34:00,754 INFO : 26% Done

19 Jul 2021 08:34:00,939 INFO : 27% Done

19 Jul 2021 08:34:01,064 DEBUG: Total peptides inserted: 4

19 Jul 2021 08:34:01,066 INFO : Inserting sp|P30305|MPIP2_HUMAN

19 Jul 2021 08:34:01,077 INFO : 28% Done

19 Jul 2021 08:34:01,214 INFO : 30% Done

19 Jul 2021 08:34:01,345 INFO : 31% Done

19 Jul 2021 08:34:01,470 DEBUG: Total peptides inserted: 3

19 Jul 2021 08:34:01,473 INFO : Inserting sp|P30307|MPIP3_HUMAN

19 Jul 2021 08:34:01,483 INFO : 32% Done

19 Jul 2021 08:34:01,601 INFO : 34% Done

19 Jul 2021 08:34:01,700 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:34:01,702 INFO : Inserting sp|P42574|CASP3_HUMAN

19 Jul 2021 08:34:01,712 INFO : 35% Done

19 Jul 2021 08:34:01,830 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:34:01,832 INFO : Inserting sp|P46013|KI67_HUMAN

19 Jul 2021 08:34:01,841 INFO : 36% Done

19 Jul 2021 08:34:01,972 INFO : 38% Done

19 Jul 2021 08:34:02,114 INFO : 39% Done

19 Jul 2021 08:34:02,233 DEBUG: Total peptides inserted: 3

19 Jul 2021 08:34:02,238 INFO : Inserting sp|P49959|MRE11_HUMAN

19 Jul 2021 08:34:02,248 INFO : 41% Done

19 Jul 2021 08:34:02,374 INFO : 42% Done

19 Jul 2021 08:34:02,474 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:34:02,476 INFO : Inserting sp|P50613|CDK7_HUMAN

19 Jul 2021 08:34:02,485 INFO : 43% Done

19 Jul 2021 08:34:02,605 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:34:02,608 INFO : Inserting sp|P68133|ACTS_HUMAN

19 Jul 2021 08:34:02,615 INFO : 44% Done

19 Jul 2021 08:34:02,708 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:34:02,710 INFO : Inserting sp|Q00987|MDM2_HUMAN

19 Jul 2021 08:34:02,720 INFO : 46% Done

19 Jul 2021 08:34:02,844 INFO : 47% Done

19 Jul 2021 08:34:02,977 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:34:02,980 INFO : Inserting sp|Q02223|TNR17_HUMAN

19 Jul 2021 08:34:02,989 INFO : 48% Done

19 Jul 2021 08:34:03,109 INFO : 50% Done

19 Jul 2021 08:34:03,230 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:34:03,234 INFO : Inserting sp|Q12888|TP53B_HUMAN

19 Jul 2021 08:34:03,357 INFO : 52% Done

19 Jul 2021 08:34:03,503 INFO : 54% Done

19 Jul 2021 08:34:03,644 INFO : 55% Done

19 Jul 2021 08:34:03,754 DEBUG: Total peptides inserted: 4

19 Jul 2021 08:34:03,757 INFO : Inserting sp|Q14566|MCM6_HUMAN

19 Jul 2021 08:34:03,766 INFO : 56% Done

19 Jul 2021 08:34:03,895 INFO : 58% Done

19 Jul 2021 08:34:04,030 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:34:04,034 INFO : Inserting sp|Q14980|NUMA1_HUMAN

19 Jul 2021 08:34:04,044 INFO : 59% Done

19 Jul 2021 08:34:04,161 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:34:04,164 INFO : Inserting sp|Q53HL2|BOREA_HUMAN

19 Jul 2021 08:34:04,172 INFO : 60% Done

19 Jul 2021 08:34:04,291 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:34:04,295 INFO : Inserting sp|Q6IBW4|CNDH2_HUMAN

19 Jul 2021 08:34:04,304 INFO : 62% Done

19 Jul 2021 08:34:04,415 INFO : 63% Done

19 Jul 2021 08:34:04,533 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:34:04,537 INFO : Inserting sp|Q8NG31|CASC5_HUMAN

19 Jul 2021 08:34:04,546 INFO : 64% Done

19 Jul 2021 08:34:04,672 INFO : 66% Done

19 Jul 2021 08:34:04,788 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:34:04,791 INFO : Inserting sp|Q92541|RTF1_HUMAN

19 Jul 2021 08:34:04,799 INFO : 67% Done

19 Jul 2021 08:34:04,925 INFO : 68% Done

19 Jul 2021 08:34:05,040 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:34:05,042 INFO : Inserting sp|Q92878|RAD50_HUMAN

19 Jul 2021 08:34:05,051 INFO : 70% Done

19 Jul 2021 08:34:05,169 DEBUG: Total peptides inserted: 1

19 Jul 2021 08:34:05,171 INFO : Inserting sp|Q96ER3|SAAL1_HUMAN

19 Jul 2021 08:34:05,179 INFO : 71% Done

19 Jul 2021 08:34:05,303 INFO : 72% Done

19 Jul 2021 08:34:05,420 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:34:05,422 INFO : Inserting sp|Q99638|RAD9A_HUMAN

19 Jul 2021 08:34:05,430 INFO : 74% Done

19 Jul 2021 08:34:05,655 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:34:05,657 INFO : Inserting sp|Q9BVJ6|UT14A_HUMAN

19 Jul 2021 08:34:05,666 INFO : 76% Done

19 Jul 2021 08:34:05,793 INFO : 78% Done

19 Jul 2021 08:34:05,911 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:34:05,916 INFO : Inserting sp|Q9H400|LIME1_HUMAN

19 Jul 2021 08:34:06,022 INFO : 80% Done

19 Jul 2021 08:34:06,112 DEBUG: Total peptides inserted: 2

19 Jul 2021 08:34:06,113 INFO : Done parsing Skyline document.

19 Jul 2021 08:34:06,116 INFO : No group comparisons found.

19 Jul 2021 08:34:06,116 INFO : Calculating calibration curves

19 Jul 2021 08:34:06,118 DEBUG: Calculating calibration curve for sp|O14757|CHK1_HUMAN, 1 of 32

19 Jul 2021 08:34:06,121 INFO : 98% Done

19 Jul 2021 08:34:06,121 INFO : No calibration curves found.

19 Jul 2021 08:34:06,121 INFO : Creating and populating temp tables for Proportion values

19 Jul 2021 08:34:06,151 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

19 Jul 2021 08:34:06,299 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

19 Jul 2021 08:34:06,352 INFO : Cleaning up temp tables

19 Jul 2021 08:34:06,565 INFO : Completed import of Skyline document from DDRpanel2_LCL_time_2021-07-16_11-50-45.sky.zip

19 Jul 2021 08:34:06,567 INFO : 100% Done

19 Jul 2021 08:34:06,571 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20DDR2_cell_treatment_dataset_69a4302e-cad3-1039-b76f-fea6ddf5767a/_temp__2021-07-19_08-30-49/export/xar/experiments_and_runs.xar.exploded/Run113755/DDRpanel2_LCL_time_2021-07-16_11-50-45.sky.zip into the system

19 Jul 2021 08:34:06,587 INFO : Done importing xar

19 Jul 2021 08:34:06,589 INFO : Loading pages and webpart properties

19 Jul 2021 08:34:06,652 INFO : Done importing pages and webpart properties

19 Jul 2021 08:34:06,652 INFO : 

19 Jul 2021 08:34:06,652 INFO : Experiment import completed successfully.

19 Jul 2021 08:34:06,653 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'

19 Jul 2021 08:34:06,694 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'

19 Jul 2021 08:34:06,694 INFO : 

19 Jul 2021 08:34:06,694 INFO : Finishing up experiment copy.

19 Jul 2021 08:34:06,696 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.

19 Jul 2021 08:34:06,699 INFO : Assigning a DOI.

19 Jul 2021 08:34:08,551 INFO : Assigned DOI: 10.6069/scg8-d680

19 Jul 2021 08:34:08,555 INFO : Updating access URL to point to the new copy of the data.

19 Jul 2021 08:34:08,560 INFO : Setting the 'copied' timestamp and journalExperimentId on the JournalExperiment table.

19 Jul 2021 08:34:08,561 INFO : Removing copy permissions given to journal.

19 Jul 2021 08:34:08,571 INFO : Adding read permissions to all users that are folder admins in the source container.

19 Jul 2021 08:34:08,578 INFO : Setting the TargetedMS folder type to 'Experimental Data'

19 Jul 2021 08:34:08,588 INFO : Updating the 'Raw Data' tab configuration

19 Jul 2021 08:34:08,591 INFO : Updating dataFileUrls for run DDRpanel2_LCL_dose_2021-07-16_11-50-14.sky.zip; targetedms run ID 116411

19 Jul 2021 08:34:08,591 INFO : Updating dataFileUrl...

19 Jul 2021 08:34:08,591 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20DDR2_cell_treatment_dataset_69a4302e-cad3-1039-b76f-fea6ddf5767a/_temp__2021-07-19_08-30-49/export/xar/experiments_and_runs.xar.exploded/Run113752/DDRpanel2_LCL_dose_2021-07-16_11-50-14.sky.zip

19 Jul 2021 08:34:08,592 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Paulovich%20-%20DDR2_cell_treatment_dataset/@files/DDRpanel2_LCL_dose_2021-07-16_11-50-14.sky.zip

19 Jul 2021 08:34:08,594 INFO : Updating dataFileUrl...

19 Jul 2021 08:34:08,595 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20DDR2_cell_treatment_dataset_69a4302e-cad3-1039-b76f-fea6ddf5767a/_temp__2021-07-19_08-30-49/export/xar/experiments_and_runs.xar.exploded/Run113752/DDRpanel2_LCL_dose_2021-07-16_11-50-14/DDRpanel2_LCL_dose.skyd

19 Jul 2021 08:34:08,595 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Paulovich%20-%20DDR2_cell_treatment_dataset/@files/DDRpanel2_LCL_dose_2021-07-16_11-50-14/DDRpanel2_LCL_dose.skyd

19 Jul 2021 08:34:08,600 INFO : Updating dataFileUrls for run DDRpanel1_PBMC_2021-07-16_11-50-24.sky.zip; targetedms run ID 116412

19 Jul 2021 08:34:08,600 INFO : Updating dataFileUrl...

19 Jul 2021 08:34:08,600 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20DDR2_cell_treatment_dataset_69a4302e-cad3-1039-b76f-fea6ddf5767a/_temp__2021-07-19_08-30-49/export/xar/experiments_and_runs.xar.exploded/Run113753/DDRpanel1_PBMC_2021-07-16_11-50-24/DDRpanel1_PBMC.skyd

19 Jul 2021 08:34:08,601 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Paulovich%20-%20DDR2_cell_treatment_dataset/@files/DDRpanel1_PBMC_2021-07-16_11-50-24/DDRpanel1_PBMC.skyd

19 Jul 2021 08:34:08,602 INFO : Updating dataFileUrl...

19 Jul 2021 08:34:08,603 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20DDR2_cell_treatment_dataset_69a4302e-cad3-1039-b76f-fea6ddf5767a/_temp__2021-07-19_08-30-49/export/xar/experiments_and_runs.xar.exploded/Run113753/DDRpanel1_PBMC_2021-07-16_11-50-24.sky.zip

19 Jul 2021 08:34:08,603 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Paulovich%20-%20DDR2_cell_treatment_dataset/@files/DDRpanel1_PBMC_2021-07-16_11-50-24.sky.zip

19 Jul 2021 08:34:08,606 INFO : Updating dataFileUrls for run DDRpanel2_PBMC_2021-07-16_11-50-34.sky.zip; targetedms run ID 116413

19 Jul 2021 08:34:08,606 INFO : Updating dataFileUrl...

19 Jul 2021 08:34:08,606 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20DDR2_cell_treatment_dataset_69a4302e-cad3-1039-b76f-fea6ddf5767a/_temp__2021-07-19_08-30-49/export/xar/experiments_and_runs.xar.exploded/Run113754/DDRpanel2_PBMC_2021-07-16_11-50-34.sky.zip

19 Jul 2021 08:34:08,606 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Paulovich%20-%20DDR2_cell_treatment_dataset/@files/DDRpanel2_PBMC_2021-07-16_11-50-34.sky.zip

19 Jul 2021 08:34:08,607 INFO : Updating dataFileUrl...

19 Jul 2021 08:34:08,608 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20DDR2_cell_treatment_dataset_69a4302e-cad3-1039-b76f-fea6ddf5767a/_temp__2021-07-19_08-30-49/export/xar/experiments_and_runs.xar.exploded/Run113754/DDRpanel2_PBMC_2021-07-16_11-50-34/DDRpanel2_PBMC.skyd

19 Jul 2021 08:34:08,608 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Paulovich%20-%20DDR2_cell_treatment_dataset/@files/DDRpanel2_PBMC_2021-07-16_11-50-34/DDRpanel2_PBMC.skyd

19 Jul 2021 08:34:08,610 INFO : Updating dataFileUrls for run DDRpanel2_LCL_time_2021-07-16_11-50-45.sky.zip; targetedms run ID 116414

19 Jul 2021 08:34:08,610 INFO : Updating dataFileUrl...

19 Jul 2021 08:34:08,611 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20DDR2_cell_treatment_dataset_69a4302e-cad3-1039-b76f-fea6ddf5767a/_temp__2021-07-19_08-30-49/export/xar/experiments_and_runs.xar.exploded/Run113755/DDRpanel2_LCL_time_2021-07-16_11-50-45.sky.zip

19 Jul 2021 08:34:08,611 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Paulovich%20-%20DDR2_cell_treatment_dataset/@files/DDRpanel2_LCL_time_2021-07-16_11-50-45.sky.zip

19 Jul 2021 08:34:08,612 INFO : Updating dataFileUrl...

19 Jul 2021 08:34:08,612 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/Paulovich%20-%20DDR2_cell_treatment_dataset_69a4302e-cad3-1039-b76f-fea6ddf5767a/_temp__2021-07-19_08-30-49/export/xar/experiments_and_runs.xar.exploded/Run113755/DDRpanel2_LCL_time_2021-07-16_11-50-45/DDRpanel2_LCL_time.skyd

19 Jul 2021 08:34:08,612 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/Paulovich%20-%20DDR2_cell_treatment_dataset/@files/DDRpanel2_LCL_time_2021-07-16_11-50-45/DDRpanel2_LCL_time.skyd

19 Jul 2021 08:34:08,614 INFO : Creating a reviewer account.

19 Jul 2021 08:34:08,830 INFO : Created reviewer with email: User panorama+reviewer47@proteinms.net

19 Jul 2021 08:34:08,838 INFO : Hiding the Data Pipeline tab.

19 Jul 2021 08:34:08,943 INFO : Emailing submitter.

19 Jul 2021 08:34:09,074 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'